******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/daf-16.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:10245795-10245875 1.0000 80 chrIV:4976155-4976235 1.0000 80 chrX:2966418-2966498 1.0000 80 chrIV:16176967-16177047 1.0000 80 chrV:13532628-13532708 1.0000 80 chrX:17637704-17637784 1.0000 80 chrX:3831031-3831111 1.0000 80 chrII:6344672-6344752 1.0000 80 chrIII:531063-531143 1.0000 80 chrX:12226143-12226223 1.0000 80 chrII:7778426-7778506 1.0000 80 chrIV:8526738-8526818 1.0000 80 chrIII:4373053-4373133 1.0000 80 chrX:12219645-12219725 1.0000 80 chrX:6121456-6121536 1.0000 80 chrX:5509277-5509357 1.0000 80 chrX:9705404-9705484 1.0000 80 chrIII:5965978-5966058 1.0000 80 chrIII:8017212-8017292 1.0000 80 chrX:2590175-2590255 1.0000 80 chrX:15771600-15771680 1.0000 80 chrV:17897076-17897156 1.0000 80 chrX:6819770-6819850 1.0000 80 chrV:9197295-9197375 1.0000 80 chrX:17206035-17206115 1.0000 80 chrX:3285088-3285168 1.0000 80 chrX:312405-312485 1.0000 80 chrX:313049-313129 1.0000 80 chrX:6884608-6884688 1.0000 80 chrV:14165904-14165984 1.0000 80 chrIV:5583348-5583428 1.0000 80 chrIII:13020900-13020980 1.0000 80 chrIV:9353887-9353967 1.0000 80 chrI:7562313-7562393 1.0000 80 chrV:15715768-15715848 1.0000 80 chrI:3671347-3671427 1.0000 80 chrIV:2080499-2080579 1.0000 80 chrX:2031029-2031109 1.0000 80 chrX:10976956-10977036 1.0000 80 chrII:15170063-15170143 1.0000 80 chrX:2214122-2214202 1.0000 80 chrIII:6895850-6895930 1.0000 80 chrIV:7734332-7734412 1.0000 80 chrV:15402015-15402095 1.0000 80 chrIII:3975195-3975275 1.0000 80 chrV:14324621-14324701 1.0000 80 chrIV:17175139-17175219 1.0000 80 chrX:7975898-7975978 1.0000 80 chrII:7420314-7420394 1.0000 80 chrII:4599997-4600077 1.0000 80 chrIII:9582415-9582495 1.0000 80 chrV:17891516-17891596 1.0000 80 chrII:10373221-10373301 1.0000 80 chrIV:14891073-14891153 1.0000 80 chrII:8738403-8738483 1.0000 80 chrX:551471-551551 1.0000 80 chrIII:9288718-9288798 1.0000 80 chrX:3141822-3141902 1.0000 80 chrX:16016980-16017060 1.0000 80 chrX:9985175-9985255 1.0000 80 chrIV:11438385-11438465 1.0000 80 chrX:7998094-7998174 1.0000 80 chrV:16621047-16621127 1.0000 80 chrV:1027203-1027283 1.0000 80 chrV:10191401-10191481 1.0000 80 chrX:5374892-5374972 1.0000 80 chrX:1094483-1094563 1.0000 80 chrX:13284250-13284330 1.0000 80 chrX:3814984-3815064 1.0000 80 chrX:17626752-17626832 1.0000 80 chrV:2656331-2656411 1.0000 80 chrV:3580599-3580679 1.0000 80 chrX:7828130-7828210 1.0000 80 chrII:10028383-10028463 1.0000 80 chrII:11155131-11155211 1.0000 80 chrI:13184786-13184866 1.0000 80 chrX:12478632-12478712 1.0000 80 chrV:15479245-15479325 1.0000 80 chrIV:7094551-7094631 1.0000 80 chrX:7343387-7343467 1.0000 80 chrV:15015243-15015323 1.0000 80 chrIII:7031668-7031748 1.0000 80 chrV:3482775-3482855 1.0000 80 chrX:10631972-10632052 1.0000 80 chrX:3785237-3785317 1.0000 80 chrV:15316311-15316391 1.0000 80 chrIV:1620065-1620145 1.0000 80 chrX:9105225-9105305 1.0000 80 chrX:12222912-12222992 1.0000 80 chrII:13763172-13763252 1.0000 80 chrI:8240953-8241033 1.0000 80 chrX:2021746-2021826 1.0000 80 chrIV:6185761-6185841 1.0000 80 chrX:5834899-5834979 1.0000 80 chrI:12872610-12872690 1.0000 80 chrIV:13609938-13610018 1.0000 80 chrV:11863057-11863137 1.0000 80 chrX:10916363-10916443 1.0000 80 chrIV:5669611-5669691 1.0000 80 chrIII:10196931-10197011 1.0000 80 chrX:2369214-2369294 1.0000 80 chrX:10030979-10031059 1.0000 80 chrV:6616469-6616549 1.0000 80 chrV:7096515-7096595 1.0000 80 chrX:8423341-8423421 1.0000 80 chrV:3581199-3581279 1.0000 80 chrV:19377145-19377225 1.0000 80 chrI:9604530-9604610 1.0000 80 chrIV:12962751-12962831 1.0000 80 chrIII:1342641-1342721 1.0000 80 chrX:5086365-5086445 1.0000 80 chrV:20423532-20423612 1.0000 80 chrII:6521501-6521581 1.0000 80 chrX:4579030-4579110 1.0000 80 chrIV:7520433-7520513 1.0000 80 chrV:16610261-16610341 1.0000 80 chrX:16041947-16042027 1.0000 80 chrX:2262573-2262653 1.0000 80 chrI:10061199-10061279 1.0000 80 chrX:10981552-10981632 1.0000 80 chrX:4981740-4981820 1.0000 80 chrIII:5420443-5420523 1.0000 80 chrII:10490490-10490570 1.0000 80 chrI:1916070-1916150 1.0000 80 chrX:6674483-6674563 1.0000 80 chrI:6592016-6592096 1.0000 80 chrX:9676923-9677003 1.0000 80 chrX:1371836-1371916 1.0000 80 chrX:2813158-2813238 1.0000 80 chrII:3990863-3990943 1.0000 80 chrII:3295353-3295433 1.0000 80 chrV:7548183-7548263 1.0000 80 chrI:13815955-13816035 1.0000 80 chrX:17510627-17510707 1.0000 80 chrV:16080868-16080948 1.0000 80 chrV:3969840-3969920 1.0000 80 chrX:7332889-7332969 1.0000 80 chrX:11992426-11992506 1.0000 80 chrV:8767660-8767740 1.0000 80 chrX:3816297-3816377 1.0000 80 chrIII:10629961-10630041 1.0000 80 chrII:5893519-5893599 1.0000 80 chrI:5421820-5421900 1.0000 80 chrI:4539975-4540055 1.0000 80 chrII:5561519-5561599 1.0000 80 chrV:16610953-16611033 1.0000 80 chrIV:13024080-13024160 1.0000 80 chrV:5666206-5666286 1.0000 80 chrI:12429298-12429378 1.0000 80 chrX:10951188-10951268 1.0000 80 chrII:7139210-7139290 1.0000 80 chrI:7307189-7307269 1.0000 80 chrX:7661056-7661136 1.0000 80 chrX:15050164-15050244 1.0000 80 chrIII:3858118-3858198 1.0000 80 chrX:4621307-4621387 1.0000 80 chrX:6667576-6667656 1.0000 80 chrII:14357641-14357721 1.0000 80 chrIV:6210718-6210798 1.0000 80 chrX:439150-439230 1.0000 80 chrIV:49932-50012 1.0000 80 chrX:6257113-6257193 1.0000 80 chrIII:9689568-9689648 1.0000 80 chrII:8948150-8948230 1.0000 80 chrII:3296795-3296875 1.0000 80 chrX:11261908-11261988 1.0000 80 chrX:8447674-8447754 1.0000 80 chrI:2962385-2962465 1.0000 80 chrII:8074270-8074350 1.0000 80 chrIV:10796835-10796915 1.0000 80 chrX:17702783-17702863 1.0000 80 chrX:16672864-16672944 1.0000 80 chrIII:6088111-6088191 1.0000 80 chrV:17723353-17723433 1.0000 80 chrV:10546906-10546986 1.0000 80 chrIII:9237844-9237924 1.0000 80 chrII:2420799-2420879 1.0000 80 chrI:154082-154162 1.0000 80 chrIII:3980091-3980171 1.0000 80 chrII:11156309-11156389 1.0000 80 chrIII:2294902-2294982 1.0000 80 chrII:5911438-5911518 1.0000 80 chrIV:9343345-9343425 1.0000 80 chrX:13088679-13088759 1.0000 80 chrIV:319825-319905 1.0000 80 chrX:9550697-9550777 1.0000 80 chrII:6260024-6260104 1.0000 80 chrIII:5222916-5222996 1.0000 80 chrX:8758124-8758204 1.0000 80 chrIV:12196741-12196821 1.0000 80 chrI:10671191-10671271 1.0000 80 chrIII:3546973-3547053 1.0000 80 chrII:1297820-1297900 1.0000 80 chrV:12944595-12944675 1.0000 80 chrX:7808521-7808601 1.0000 80 chrV:4964835-4964915 1.0000 80 chrX:12241602-12241682 1.0000 80 chrII:7948425-7948505 1.0000 80 chrIII:5221997-5222077 1.0000 80 chrI:8009798-8009878 1.0000 80 chrIII:11822539-11822619 1.0000 80 chrX:1125614-1125694 1.0000 80 chrIII:13388770-13388850 1.0000 80 chrX:16732766-16732846 1.0000 80 chrI:5207722-5207802 1.0000 80 chrIV:6553705-6553785 1.0000 80 chrX:2320697-2320777 1.0000 80 chrX:4523491-4523571 1.0000 80 chrV:18957563-18957643 1.0000 80 chrII:6025099-6025179 1.0000 80 chrIV:15849785-15849865 1.0000 80 chrV:13576994-13577074 1.0000 80 chrX:9208701-9208781 1.0000 80 chrV:13733866-13733946 1.0000 80 chrI:10561602-10561682 1.0000 80 chrV:17297530-17297610 1.0000 80 chrV:17598985-17599065 1.0000 80 chrII:5805467-5805547 1.0000 80 chrIII:1676738-1676818 1.0000 80 chrX:4248567-4248647 1.0000 80 chrI:10227016-10227096 1.0000 80 chrV:18371738-18371818 1.0000 80 chrV:9173107-9173187 1.0000 80 chrIII:5666989-5667069 1.0000 80 chrII:9937040-9937120 1.0000 80 chrV:6575855-6575935 1.0000 80 chrV:12798154-12798234 1.0000 80 chrX:12229836-12229916 1.0000 80 chrX:8014794-8014874 1.0000 80 chrX:4284152-4284232 1.0000 80 chrX:12596080-12596160 1.0000 80 chrI:1919313-1919393 1.0000 80 chrII:12892537-12892617 1.0000 80 chrIII:6989366-6989446 1.0000 80 chrX:17092579-17092659 1.0000 80 chrX:3551363-3551443 1.0000 80 chrX:3387479-3387559 1.0000 80 chrI:9652998-9653078 1.0000 80 chrIII:6346152-6346232 1.0000 80 chrX:5109282-5109362 1.0000 80 chrI:10382029-10382109 1.0000 80 chrII:13495855-13495935 1.0000 80 chrII:2834327-2834407 1.0000 80 chrV:13891658-13891738 1.0000 80 chrII:10232011-10232091 1.0000 80 chrII:6526284-6526364 1.0000 80 chrII:6025830-6025910 1.0000 80 chrX:12350371-12350451 1.0000 80 chrV:6612985-6613065 1.0000 80 chrX:17386305-17386385 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_daf-16/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/daf-16.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.332 C 0.172 G 0.176 T 0.32 Background letter frequencies (from file dataset with add-one prior applied): A 0.332 C 0.172 G 0.176 T 0.32 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTGTTTAC MEME-1 width = 8 sites = 116 llr = 784 E-value = 5.5e-029 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGTTTAC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2:1:::8: pos.-specific C 2::::::7 probability G 2:9::2:: matrix T 5a:aa823 bits 2.5 2.3 2.0 1.8 * Relative 1.5 **** * Entropy 1.3 **** * (9.8 bits) 1.0 ***** * 0.8 ******* 0.5 ******* 0.3 ******* 0.0 -------- Multilevel TTGTTTAC consensus A G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTTAC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:9652998-9653078 34 3.37e-05 AGACGAAGAG TTGTTTAC GATAATTCAA chrX:17092579-17092659 59 3.37e-05 CCAGTGCGGG TTGTTTAC GCGTTTTCAA chrI:5207722-5207802 70 3.37e-05 ATTTATTACC TTGTTTAC TAA chrIV:12196741-12196821 20 3.37e-05 TTTGGTCGTT TTGTTTAC TGGCCTTTCA chrX:8447674-8447754 58 3.37e-05 TTCTTGAACG TTGTTTAC GACTGGCAAA chrII:3296795-3296875 17 3.37e-05 AGCAAATAAG TTGTTTAC TTTACATACT chrV:16610953-16611033 61 3.37e-05 TGTCAGTTTC TTGTTTAC AGAATAGAGC chrX:5086365-5086445 36 3.37e-05 GGGGGCTCAC TTGTTTAC CGGTGTGGTC chrV:15015243-15015323 17 3.37e-05 ATCAACAGAC TTGTTTAC TTCGAGAAAT chrI:13184786-13184866 41 3.37e-05 TGAGTATAAG TTGTTTAC GATAATTCGG chrIII:9288718-9288798 7 3.37e-05 TATAAG TTGTTTAC AGTCCACATA chrIII:3975195-3975275 13 3.37e-05 TTTTTATCAC TTGTTTAC CAAGTTTTTT chrX:2031029-2031109 10 3.37e-05 CTATTCCTC TTGTTTAC TTTCCGCAGT chrX:9705404-9705484 17 3.37e-05 AAAAACAAAG TTGTTTAC AATAACCTAA chrX:6121456-6121536 37 3.37e-05 CTGATAAAAA TTGTTTAC TATTTGAGAA chrIV:16176967-16177047 11 3.37e-05 GCCATATAAG TTGTTTAC CCCAAAATAT chrV:10245795-10245875 34 3.37e-05 GTTGAGAGAA TTGTTTAC AGTTTACCAG chrX:17386305-17386385 34 7.04e-05 GTACTTGCAA GTGTTTAC CAATGGTAAC chrV:17297530-17297610 8 7.04e-05 GAGTGAT GTGTTTAC AACACGTTGA chrII:5911438-5911518 42 7.04e-05 ATTATCTAAA CTGTTTAC ATAACTATTC chrII:2420799-2420879 35 7.04e-05 CTAATTGTTT GTGTTTAC ATTATCATAA chrX:16672864-16672944 1 7.04e-05 . CTGTTTAC AACTTTTAAC chrX:17510627-17510707 31 7.04e-05 CATCATCAAT CTGTTTAC GTGTGCGAGC chrI:1916070-1916150 35 7.04e-05 GTAAAGATTG GTGTTTAC TCGTGATACT chrX:10030979-10031059 42 7.04e-05 AAACAAAACG CTGTTTAC GTTTAGCTTT chrV:2656331-2656411 7 7.04e-05 CGCACC GTGTTTAC CCACCACTTT chrX:13284250-13284330 50 7.04e-05 AGTAGAGTTT GTGTTTAC CATGTCTTAA chrX:7975898-7975978 41 7.04e-05 AGTTTACAAA GTGTTTAC TACTTTTATT chrI:3671347-3671427 38 7.04e-05 GTGACGAAAA CTGTTTAC ATTGTGTTAA chrV:13576994-13577074 7 8.89e-05 TATGTC TTGTTGAC TCTTTCAAGC chrV:12944595-12944675 54 8.89e-05 CCTAAATATC TTGTTGAC TTCCAATATA chrII:4599997-4600077 49 8.89e-05 TGTCAATTGT TTGTTGAC TCGAAAAAGT chrX:6819770-6819850 36 8.89e-05 GATAGCGATT TTGTTGAC ATTGCAGCCG chrX:12226143-12226223 66 8.89e-05 TATCATTTAG TTGTTGAC ATTTTTG chrII:2834327-2834407 58 1.24e-04 CTGCTGTCTC ATGTTTAC CAAAAGTGTG chrV:18371738-18371818 9 1.24e-04 AATATCAT ATGTTTAC TCATTTCTAC chrX:10951188-10951268 17 1.24e-04 AAAATTGTTG ATGTTTAC CTAGCTCACC chrV:8767660-8767740 30 1.24e-04 AATACATTCA ATGTTTAC CTGAAGAGTC chrX:10981552-10981632 29 1.24e-04 TTGGTACTAA ATGTTTAC AATTTTCAGT chrIV:13609938-13610018 55 1.24e-04 TAACGTCATT ATGTTTAC TTTTCCGGTC chrIII:7031668-7031748 45 1.24e-04 GTTCAAAAAC ATGTTTAC ATCAAATCGG chrX:17702783-17702863 27 1.44e-04 GACAATCAAT GTGTTGAC AAGATACACG chrX:2813158-2813238 69 1.44e-04 TTTCACATTG GTGTTGAC CGTT chrV:3581199-3581279 11 1.44e-04 TGCCCCCCTC CTGTTGAC TTTGTACTGC chrV:6616469-6616549 21 1.44e-04 TGTTGACATA GTGTTGAC GCATTTCACT chrIV:4976155-4976235 53 1.44e-04 ATCAGAACGT CTGTTGAC ATCATTGAAT chrX:11261908-11261988 48 1.77e-04 ATAACAAACA TTGTTTTC ATGCGGTATG chrX:4621307-4621387 63 1.77e-04 GATAAATTTC TTGTTTTC GAGAAAAAAA chrX:5509277-5509357 11 1.77e-04 TATAGAATGT TTGTTTTC ATAAACGACA chrV:3580599-3580679 30 1.96e-04 AGTTTTCTGC ATGTTGAC TGACCGCCGA chrX:12350371-12350451 41 2.94e-04 ACCACATTGG TTGTTTAT TCAACACTAG chrV:13891658-13891738 48 2.94e-04 ATCACCCCAC TTGTTTAT CAGATGTTTC chrX:3387479-3387559 22 2.94e-04 CACTTTTTTT TTGTTTAT TTCACTACCG chrX:3551363-3551443 63 2.94e-04 TCAACCAAAA TTGTTTAT GAAGCCCCAG chrI:10561602-10561682 17 2.94e-04 AAACTAGGTG CTGTTTTC AGTCTGCTGC chrI:10671191-10671271 65 2.94e-04 TTTAATTGTC TTGTTTAT CAATAATT chrIII:5222916-5222996 41 2.94e-04 TCTCTGTCCT CTGTTTTC TCGAATTCTC chrII:6260024-6260104 9 2.94e-04 AAGATAGT CTGTTTTC CAATTTACAC chrIII:6088111-6088191 57 2.94e-04 TCACTCATAA GTGTTTTC TTGTTTTTTT chrII:5893519-5893599 9 2.94e-04 TTCACCTG CTGTTTTC CGTTTATCTT chrII:3295353-3295433 7 2.94e-04 AATTAG TTGTTTAT AATACCCTTA chrI:9604530-9604610 13 2.94e-04 AATGCCCTTC TTGTTTAT CTCGGTATGA chrI:7562313-7562393 26 2.94e-04 TTTGATAAAT CTGTTTTC AAGAAAAGCT chrX:12219645-12219725 55 2.94e-04 TCATATTATT GTGTTTTC CAATGCTAGT chrX:2214122-2214202 26 3.12e-04 ACAAATATTT TTGTTGTC CAGTGGTGCT chrX:9208701-9208781 34 4.14e-04 TCACGCAAAA CTGTTTAT ACTCCTACCA chrIV:7520433-7520513 7 4.14e-04 GCCTAC ATGTTTTC AATATTTGTA chrIV:7094551-7094631 63 4.14e-04 TGCCTTTTTT GTGTTTAT TCTGCATTTT chrIV:7734332-7734412 41 4.14e-04 CGAGGGATAC CTGTTTAT GATATCAGTT chrIV:2080499-2080579 22 4.14e-04 TTAAAATCAG GTGTTTAT ATAATAGAAT chrX:3831031-3831111 23 4.14e-04 CAAAGTAAAC ATGTTTTC AACCAGTTTG chrI:1919313-1919393 32 4.68e-04 TCGTGGTAAG TTGTTGAT GTTGATCTAC chrII:7948425-7948505 8 4.68e-04 GGACAAC TTGTTGAT TTTAAGCTTG chrX:7343387-7343467 11 4.68e-04 AGGGCGGTGT GTGTTGTC ATATGTTACA chrIII:531063-531143 33 4.68e-04 TATACACAGA TTGTTGAT GAGCTCGGAC chrX:9676923-9677003 34 4.86e-04 TTTGTGGTGG TTGTGTAC GTTTGTCTTA chrII:12892537-12892617 13 6.15e-04 CGCAACTGTT ATGTTTAT CATGAAACAC chrII:9937040-9937120 31 6.15e-04 CTTATCAATA TTATTTAC AATAAAGTAG chrI:2962385-2962465 60 6.15e-04 ACACATAAAC ATGTTTAT CATATTTGGA chrII:8948150-8948230 70 6.15e-04 ATAATGTGGC TTATTTAC GAC chrV:16080868-16080948 55 6.15e-04 TGAACAATTG ATGTTTAT TTAAATTTTA chrII:7420314-7420394 45 6.15e-04 AAACGTCAGA ATGTTTAT GACAAAAGTG chrII:6344672-6344752 30 6.15e-04 AGGAATAAAC ATGTTTAT GAACACCACA chrI:10382029-10382109 22 6.89e-04 TTTCGTGTTT CTGTTGAT AAGAGTGACG chrX:16732766-16732846 45 6.89e-04 TAAGAGATTT TTGTTTCC ATTTTGGTAG chrIII:9237844-9237924 64 6.89e-04 TGGTCAGTGA GTGTTGAT CGGCAAAAA chrII:11155131-11155211 40 6.89e-04 GAACACGTCA TTGTTTCC CGACCCACGT chrII:6025099-6025179 29 7.09e-04 GGCGGAAAAA GTGTGTAC GGTGGGTATT chrIII:3858118-3858198 32 7.09e-04 TGTTGGGTGT GTGTGTAC TCTGCTCTGA chrX:1125614-1125694 66 8.49e-04 TTTTGAAGCC TTGTTTTT CAACATT chrI:7307189-7307269 47 8.49e-04 GCCTCTTGTT TTGTTTTT TTGAATGTTT chrI:12872610-12872690 9 8.49e-04 TAACATAT GTATTTAC AGTTACTGGT chrX:10976956-10977036 45 8.49e-04 CGAGCCAACA CTATTTAC TGCTTGACAG chrV:15715768-15715848 56 8.49e-04 ATAAACATGT TTGTTTTT TTTGAACACG chrX:2590175-2590255 41 8.49e-04 CACACGCAAA TTGTTTTT GACCGCAGTT chrIV:6553705-6553785 46 9.38e-04 TTGTCGGAAT TTATTGAC TATTTAAGAT chrV:17723353-17723433 21 9.38e-04 TTTGGACATG TTATTGAC ATTAAAAACA chrI:8009798-8009878 33 9.67e-04 ATTGGTAAAC ATGTGTAC ATTTTCTCTC chrX:6257113-6257193 42 9.67e-04 TGTAATCTAG TTGTTGCC GATTGAGATC chrIII:6895850-6895930 44 9.67e-04 CTAATAGTAA ATGTGTAC ATTGAAGTCA chrIII:1676738-1676818 13 1.11e-03 ACGCGGCCAA ATATTTAC CAATGATGTC chrIII:2294902-2294982 15 1.11e-03 TAGACAGTCA ATATTTAC CTTCTCTTCT chrV:19377145-19377225 13 1.11e-03 ACTTTGATCA ATATTTAC ATATTTTCAC chrX:10916363-10916443 33 1.11e-03 ACGTGATGAA GTGTTTTT AAAATATTAT chrV:15316311-15316391 23 1.11e-03 CAACACAATT ATATTTAC CGCTAGAGTA chrX:17206035-17206115 11 1.11e-03 CTTATCGGCA ATATTTAC CTAGAGCCAG chrX:17637704-17637784 32 1.11e-03 TGCAAAGTAA ATATTTAC AATTGTTATC chrV:4964835-4964915 70 1.23e-03 TGTGATCACA TTGATTAC ACA chrX:3816297-3816377 1 1.23e-03 . TTGTTGTT TGTAATGTAG chrX:6674483-6674563 42 1.23e-03 ATCGTAAAAT TTGTTGTT GCGTTTTAAA chrIII:10196931-10197011 10 1.23e-03 TTCTCGACG CTATTGAC AGTTGAGTCT chrV:15479245-15479325 64 1.23e-03 TGCTAACGCC CTATTGAC CAACGTCTT chrII:14357641-14357721 45 1.40e-03 ACAGAACAAC ATGTTTTT AGAGAAAATA chrII:13495855-13495935 28 1.51e-03 GTGATTCTGT CTGTTGTT GTGCTCACAC chrIII:3546973-3547053 5 1.59e-03 GTAC TTGATGAC CGATGGACTG chrI:12429298-12429378 45 1.59e-03 AGAAGACGAT TTGATGAC AATACTGATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTTAC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:9652998-9653078 3.4e-05 33_[+1]_39 chrX:17092579-17092659 3.4e-05 58_[+1]_14 chrI:5207722-5207802 3.4e-05 69_[+1]_3 chrIV:12196741-12196821 3.4e-05 19_[+1]_53 chrX:8447674-8447754 3.4e-05 57_[+1]_15 chrII:3296795-3296875 3.4e-05 16_[+1]_56 chrV:16610953-16611033 3.4e-05 60_[+1]_12 chrX:5086365-5086445 3.4e-05 35_[+1]_37 chrV:15015243-15015323 3.4e-05 16_[+1]_56 chrI:13184786-13184866 3.4e-05 40_[+1]_32 chrIII:9288718-9288798 3.4e-05 6_[+1]_66 chrIII:3975195-3975275 3.4e-05 12_[+1]_60 chrX:2031029-2031109 3.4e-05 9_[+1]_63 chrX:9705404-9705484 3.4e-05 16_[+1]_56 chrX:6121456-6121536 3.4e-05 36_[+1]_36 chrIV:16176967-16177047 3.4e-05 10_[+1]_62 chrV:10245795-10245875 3.4e-05 33_[+1]_39 chrX:17386305-17386385 7e-05 33_[+1]_39 chrV:17297530-17297610 7e-05 7_[+1]_65 chrII:5911438-5911518 7e-05 41_[+1]_31 chrII:2420799-2420879 7e-05 34_[+1]_38 chrX:16672864-16672944 7e-05 [+1]_72 chrX:17510627-17510707 7e-05 30_[+1]_42 chrI:1916070-1916150 7e-05 34_[+1]_38 chrX:10030979-10031059 7e-05 41_[+1]_31 chrV:2656331-2656411 7e-05 6_[+1]_66 chrX:13284250-13284330 7e-05 49_[+1]_23 chrX:7975898-7975978 7e-05 40_[+1]_32 chrI:3671347-3671427 7e-05 37_[+1]_35 chrV:13576994-13577074 8.9e-05 6_[+1]_66 chrV:12944595-12944675 8.9e-05 53_[+1]_19 chrII:4599997-4600077 8.9e-05 48_[+1]_24 chrX:6819770-6819850 8.9e-05 35_[+1]_37 chrX:12226143-12226223 8.9e-05 65_[+1]_7 chrII:2834327-2834407 0.00012 57_[+1]_15 chrV:18371738-18371818 0.00012 8_[+1]_64 chrX:10951188-10951268 0.00012 16_[+1]_56 chrV:8767660-8767740 0.00012 29_[+1]_43 chrX:10981552-10981632 0.00012 28_[+1]_44 chrIV:13609938-13610018 0.00012 54_[+1]_18 chrIII:7031668-7031748 0.00012 44_[+1]_28 chrX:17702783-17702863 0.00014 26_[+1]_46 chrX:2813158-2813238 0.00014 68_[+1]_4 chrV:3581199-3581279 0.00014 10_[+1]_62 chrV:6616469-6616549 0.00014 20_[+1]_52 chrIV:4976155-4976235 0.00014 52_[+1]_20 chrX:11261908-11261988 0.00018 47_[+1]_25 chrX:4621307-4621387 0.00018 62_[+1]_10 chrX:5509277-5509357 0.00018 10_[+1]_62 chrV:3580599-3580679 0.0002 29_[+1]_43 chrX:12350371-12350451 0.00029 40_[+1]_32 chrV:13891658-13891738 0.00029 47_[+1]_25 chrX:3387479-3387559 0.00029 21_[+1]_51 chrX:3551363-3551443 0.00029 62_[+1]_10 chrI:10561602-10561682 0.00029 16_[+1]_56 chrI:10671191-10671271 0.00029 64_[+1]_8 chrIII:5222916-5222996 0.00029 40_[+1]_32 chrII:6260024-6260104 0.00029 8_[+1]_64 chrIII:6088111-6088191 0.00029 56_[+1]_16 chrII:5893519-5893599 0.00029 8_[+1]_64 chrII:3295353-3295433 0.00029 6_[+1]_66 chrI:9604530-9604610 0.00029 12_[+1]_60 chrI:7562313-7562393 0.00029 25_[+1]_47 chrX:12219645-12219725 0.00029 54_[+1]_18 chrX:2214122-2214202 0.00031 25_[+1]_47 chrX:9208701-9208781 0.00041 33_[+1]_39 chrIV:7520433-7520513 0.00041 6_[+1]_66 chrIV:7094551-7094631 0.00041 62_[+1]_10 chrIV:7734332-7734412 0.00041 40_[+1]_32 chrIV:2080499-2080579 0.00041 21_[+1]_51 chrX:3831031-3831111 0.00041 22_[+1]_50 chrI:1919313-1919393 0.00047 31_[+1]_41 chrII:7948425-7948505 0.00047 7_[+1]_65 chrX:7343387-7343467 0.00047 10_[+1]_62 chrIII:531063-531143 0.00047 32_[+1]_40 chrX:9676923-9677003 0.00049 33_[+1]_39 chrII:12892537-12892617 0.00061 12_[+1]_60 chrII:9937040-9937120 0.00061 30_[+1]_42 chrI:2962385-2962465 0.00061 59_[+1]_13 chrII:8948150-8948230 0.00061 69_[+1]_3 chrV:16080868-16080948 0.00061 54_[+1]_18 chrII:7420314-7420394 0.00061 44_[+1]_28 chrII:6344672-6344752 0.00061 29_[+1]_43 chrI:10382029-10382109 0.00069 21_[+1]_51 chrX:16732766-16732846 0.00069 44_[+1]_28 chrIII:9237844-9237924 0.00069 63_[+1]_9 chrII:11155131-11155211 0.00069 39_[+1]_33 chrII:6025099-6025179 0.00071 28_[+1]_44 chrIII:3858118-3858198 0.00071 31_[+1]_41 chrX:1125614-1125694 0.00085 65_[+1]_7 chrI:7307189-7307269 0.00085 46_[+1]_26 chrI:12872610-12872690 0.00085 8_[+1]_64 chrX:10976956-10977036 0.00085 44_[+1]_28 chrV:15715768-15715848 0.00085 55_[+1]_17 chrX:2590175-2590255 0.00085 40_[+1]_32 chrIV:6553705-6553785 0.00094 45_[+1]_27 chrV:17723353-17723433 0.00094 20_[+1]_52 chrI:8009798-8009878 0.00097 32_[+1]_40 chrX:6257113-6257193 0.00097 41_[+1]_31 chrIII:6895850-6895930 0.00097 43_[+1]_29 chrIII:1676738-1676818 0.0011 12_[+1]_60 chrIII:2294902-2294982 0.0011 14_[+1]_58 chrV:19377145-19377225 0.0011 12_[+1]_60 chrX:10916363-10916443 0.0011 32_[+1]_40 chrV:15316311-15316391 0.0011 22_[+1]_50 chrX:17206035-17206115 0.0011 10_[+1]_62 chrX:17637704-17637784 0.0011 31_[+1]_41 chrV:4964835-4964915 0.0012 69_[+1]_3 chrX:3816297-3816377 0.0012 [+1]_72 chrX:6674483-6674563 0.0012 41_[+1]_31 chrIII:10196931-10197011 0.0012 9_[+1]_63 chrV:15479245-15479325 0.0012 63_[+1]_9 chrII:14357641-14357721 0.0014 44_[+1]_28 chrII:13495855-13495935 0.0015 27_[+1]_45 chrIII:3546973-3547053 0.0016 4_[+1]_68 chrI:12429298-12429378 0.0016 44_[+1]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTTAC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGTTTAC width=8 seqs=116 chrI:9652998-9653078 ( 34) TTGTTTAC 1 chrX:17092579-17092659 ( 59) TTGTTTAC 1 chrI:5207722-5207802 ( 70) TTGTTTAC 1 chrIV:12196741-12196821 ( 20) TTGTTTAC 1 chrX:8447674-8447754 ( 58) TTGTTTAC 1 chrII:3296795-3296875 ( 17) TTGTTTAC 1 chrV:16610953-16611033 ( 61) TTGTTTAC 1 chrX:5086365-5086445 ( 36) TTGTTTAC 1 chrV:15015243-15015323 ( 17) TTGTTTAC 1 chrI:13184786-13184866 ( 41) TTGTTTAC 1 chrIII:9288718-9288798 ( 7) TTGTTTAC 1 chrIII:3975195-3975275 ( 13) TTGTTTAC 1 chrX:2031029-2031109 ( 10) TTGTTTAC 1 chrX:9705404-9705484 ( 17) TTGTTTAC 1 chrX:6121456-6121536 ( 37) TTGTTTAC 1 chrIV:16176967-16177047 ( 11) TTGTTTAC 1 chrV:10245795-10245875 ( 34) TTGTTTAC 1 chrX:17386305-17386385 ( 34) GTGTTTAC 1 chrV:17297530-17297610 ( 8) GTGTTTAC 1 chrII:5911438-5911518 ( 42) CTGTTTAC 1 chrII:2420799-2420879 ( 35) GTGTTTAC 1 chrX:16672864-16672944 ( 1) CTGTTTAC 1 chrX:17510627-17510707 ( 31) CTGTTTAC 1 chrI:1916070-1916150 ( 35) GTGTTTAC 1 chrX:10030979-10031059 ( 42) CTGTTTAC 1 chrV:2656331-2656411 ( 7) GTGTTTAC 1 chrX:13284250-13284330 ( 50) GTGTTTAC 1 chrX:7975898-7975978 ( 41) GTGTTTAC 1 chrI:3671347-3671427 ( 38) CTGTTTAC 1 chrV:13576994-13577074 ( 7) TTGTTGAC 1 chrV:12944595-12944675 ( 54) TTGTTGAC 1 chrII:4599997-4600077 ( 49) TTGTTGAC 1 chrX:6819770-6819850 ( 36) TTGTTGAC 1 chrX:12226143-12226223 ( 66) TTGTTGAC 1 chrII:2834327-2834407 ( 58) ATGTTTAC 1 chrV:18371738-18371818 ( 9) ATGTTTAC 1 chrX:10951188-10951268 ( 17) ATGTTTAC 1 chrV:8767660-8767740 ( 30) ATGTTTAC 1 chrX:10981552-10981632 ( 29) ATGTTTAC 1 chrIV:13609938-13610018 ( 55) ATGTTTAC 1 chrIII:7031668-7031748 ( 45) ATGTTTAC 1 chrX:17702783-17702863 ( 27) GTGTTGAC 1 chrX:2813158-2813238 ( 69) GTGTTGAC 1 chrV:3581199-3581279 ( 11) CTGTTGAC 1 chrV:6616469-6616549 ( 21) GTGTTGAC 1 chrIV:4976155-4976235 ( 53) CTGTTGAC 1 chrX:11261908-11261988 ( 48) TTGTTTTC 1 chrX:4621307-4621387 ( 63) TTGTTTTC 1 chrX:5509277-5509357 ( 11) TTGTTTTC 1 chrV:3580599-3580679 ( 30) ATGTTGAC 1 chrX:12350371-12350451 ( 41) TTGTTTAT 1 chrV:13891658-13891738 ( 48) TTGTTTAT 1 chrX:3387479-3387559 ( 22) TTGTTTAT 1 chrX:3551363-3551443 ( 63) TTGTTTAT 1 chrI:10561602-10561682 ( 17) CTGTTTTC 1 chrI:10671191-10671271 ( 65) TTGTTTAT 1 chrIII:5222916-5222996 ( 41) CTGTTTTC 1 chrII:6260024-6260104 ( 9) CTGTTTTC 1 chrIII:6088111-6088191 ( 57) GTGTTTTC 1 chrII:5893519-5893599 ( 9) CTGTTTTC 1 chrII:3295353-3295433 ( 7) TTGTTTAT 1 chrI:9604530-9604610 ( 13) TTGTTTAT 1 chrI:7562313-7562393 ( 26) CTGTTTTC 1 chrX:12219645-12219725 ( 55) GTGTTTTC 1 chrX:2214122-2214202 ( 26) TTGTTGTC 1 chrX:9208701-9208781 ( 34) CTGTTTAT 1 chrIV:7520433-7520513 ( 7) ATGTTTTC 1 chrIV:7094551-7094631 ( 63) GTGTTTAT 1 chrIV:7734332-7734412 ( 41) CTGTTTAT 1 chrIV:2080499-2080579 ( 22) GTGTTTAT 1 chrX:3831031-3831111 ( 23) ATGTTTTC 1 chrI:1919313-1919393 ( 32) TTGTTGAT 1 chrII:7948425-7948505 ( 8) TTGTTGAT 1 chrX:7343387-7343467 ( 11) GTGTTGTC 1 chrIII:531063-531143 ( 33) TTGTTGAT 1 chrX:9676923-9677003 ( 34) TTGTGTAC 1 chrII:12892537-12892617 ( 13) ATGTTTAT 1 chrII:9937040-9937120 ( 31) TTATTTAC 1 chrI:2962385-2962465 ( 60) ATGTTTAT 1 chrII:8948150-8948230 ( 70) TTATTTAC 1 chrV:16080868-16080948 ( 55) ATGTTTAT 1 chrII:7420314-7420394 ( 45) ATGTTTAT 1 chrII:6344672-6344752 ( 30) ATGTTTAT 1 chrI:10382029-10382109 ( 22) CTGTTGAT 1 chrX:16732766-16732846 ( 45) TTGTTTCC 1 chrIII:9237844-9237924 ( 64) GTGTTGAT 1 chrII:11155131-11155211 ( 40) TTGTTTCC 1 chrII:6025099-6025179 ( 29) GTGTGTAC 1 chrIII:3858118-3858198 ( 32) GTGTGTAC 1 chrX:1125614-1125694 ( 66) TTGTTTTT 1 chrI:7307189-7307269 ( 47) TTGTTTTT 1 chrI:12872610-12872690 ( 9) GTATTTAC 1 chrX:10976956-10977036 ( 45) CTATTTAC 1 chrV:15715768-15715848 ( 56) TTGTTTTT 1 chrX:2590175-2590255 ( 41) TTGTTTTT 1 chrIV:6553705-6553785 ( 46) TTATTGAC 1 chrV:17723353-17723433 ( 21) TTATTGAC 1 chrI:8009798-8009878 ( 33) ATGTGTAC 1 chrX:6257113-6257193 ( 42) TTGTTGCC 1 chrIII:6895850-6895930 ( 44) ATGTGTAC 1 chrIII:1676738-1676818 ( 13) ATATTTAC 1 chrIII:2294902-2294982 ( 15) ATATTTAC 1 chrV:19377145-19377225 ( 13) ATATTTAC 1 chrX:10916363-10916443 ( 33) GTGTTTTT 1 chrV:15316311-15316391 ( 23) ATATTTAC 1 chrX:17206035-17206115 ( 11) ATATTTAC 1 chrX:17637704-17637784 ( 32) ATATTTAC 1 chrV:4964835-4964915 ( 70) TTGATTAC 1 chrX:3816297-3816377 ( 1) TTGTTGTT 1 chrX:6674483-6674563 ( 42) TTGTTGTT 1 chrIII:10196931-10197011 ( 10) CTATTGAC 1 chrV:15479245-15479325 ( 64) CTATTGAC 1 chrII:14357641-14357721 ( 45) ATGTTTTT 1 chrII:13495855-13495935 ( 28) CTGTTGTT 1 chrIII:3546973-3547053 ( 5) TTGATGAC 1 chrI:12429298-12429378 ( 45) TTGATGAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTTAC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.93248 E= 5.5e-029 -68 -7 -3 51 -1350 -1350 -1350 164 -146 -1350 232 -1350 -368 -1350 -1350 160 -1350 -1350 -203 158 -1350 -1350 46 124 122 -273 -1350 -69 -1350 211 -1350 -31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTTAC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 116 E= 5.5e-029 0.206897 0.163793 0.172414 0.456897 0.000000 0.000000 0.000000 1.000000 0.120690 0.000000 0.879310 0.000000 0.025862 0.000000 0.000000 0.974138 0.000000 0.000000 0.043103 0.956897 0.000000 0.000000 0.241379 0.758621 0.775862 0.025862 0.000000 0.198276 0.000000 0.741379 0.000000 0.258621 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTTAC MEME-1 regular expression -------------------------------------------------------------------------------- [TA]TGTT[TG]A[CT] -------------------------------------------------------------------------------- Time 5.27 secs. ******************************************************************************** ******************************************************************************** MOTIF GWMAACAA MEME-2 width = 8 sites = 131 llr = 854 E-value = 2.4e-029 ******************************************************************************** -------------------------------------------------------------------------------- Motif GWMAACAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 3369a:a6 pos.-specific C :131:a:2 probability G 7::::::: matrix T :61::::2 bits 2.5 * 2.3 * 2.0 * 1.8 * Relative 1.5 *** Entropy 1.3 * **** (9.4 bits) 1.0 * **** 0.8 * ***** 0.5 * ***** 0.3 ******** 0.0 -------- Multilevel GTAAACAA consensus AAC C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWMAACAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:6612985-6613065 53 5.93e-05 GAGTCACGCT GTAAACAA GAATTGTGGA chrIII:6346152-6346232 38 5.93e-05 ATTTGCGATA GTAAACAA GCCCTCTTTC chrV:18371738-18371818 51 5.93e-05 AAAGGAGGCA GTAAACAA GGTCACTTGT chrIII:5221997-5222077 15 5.93e-05 TGAAACAAAA GTAAACAA GTAATCATTT chrIV:9343345-9343425 69 5.93e-05 ATCGTAAAAA GTAAACaa gaaa chrI:5421820-5421900 29 5.93e-05 ATTACTTTCA GTCAACAA CTCGATTAGT chrII:5893519-5893599 72 5.93e-05 GAATTGGGCA GTAAACAA G chrX:11992426-11992506 46 5.93e-05 TTGAGCTGCT GTCAACAA ACGCATAATA chrX:1371836-1371916 1 5.93e-05 . GTCAACAA TGATCTTTCC chrV:16610261-16610341 72 5.93e-05 TAACGGGCTA GTAAACAA A chrV:20423532-20423612 53 5.93e-05 AAAATGCCCA GTCAACAA GCGAGAGGTG chrIII:1342641-1342721 44 5.93e-05 TGTCAAAACT GTAAACAA TTTATTATCA chrIV:5669611-5669691 58 5.93e-05 ATGAACTATT GTCAACAA GAAACACGAA chrV:11863057-11863137 70 5.93e-05 CAATATTCAA GTCAACAA GAA chrX:3785237-3785317 48 5.93e-05 AATTTTGATG GTAAACAA CTCATTCCTT chrX:7828130-7828210 49 5.93e-05 CTCCGTCGCT GTAAACAA TAAAATAGTT chrV:16621047-16621127 30 5.93e-05 TAAAATGTGA GTAAACAA TTCAAAAAGC chrX:3141822-3141902 7 5.93e-05 AATGTT GTAAACAA GACGAGAAGC chrII:8738403-8738483 36 5.93e-05 CAGCCGATCA GTAAACAA AACAAAACAC chrIII:9582415-9582495 56 5.93e-05 GCTGGTTTTT GTAAACAA GTATATAGGT chrIII:6895850-6895930 8 5.93e-05 AGTTGCT GTCAACAA CCACCTGAAA chrIII:13020900-13020980 45 5.93e-05 CCACTGAATG GTAAACAA GCTGAAAGGT chrIV:5583348-5583428 24 5.93e-05 TTCTTTCGTC GTAAACAA CACACACGCC chrII:7778426-7778506 38 5.93e-05 ttaaaaatat gtcaacaa aaacaagtgt chrX:6667576-6667656 34 9.00e-05 CAGGCATGTC GTCAACAC GTTTATTTTA chrIII:10629961-10630041 46 9.00e-05 ACGTTACTGG GTAAACAC CTCGCTTATC chrV:16080868-16080948 28 9.00e-05 GCACACAAAA GTAAACAC CAAAACGGAT chrV:3580599-3580679 52 9.00e-05 CGCCGACACG GTCAACAC TGATATTATT chrIV:14891073-14891153 29 9.00e-05 GGATTCCGAA GTAAACAC CTCCCTTCTC chrII:15170063-15170143 31 9.00e-05 TTCTTATTTT GTCAACAC TTGTATGTCG chrX:10976956-10977036 63 9.00e-05 TGCTTGACAG GTAAACAC ACCGGAGTCG chrV:9197295-9197375 49 9.00e-05 GGAAAGAGAC GTAAACAC ATCAAGAAAT chrIII:5965978-5966058 42 9.00e-05 AAAAAAAACG GTAAACAC TTATTCACAC chrV:13576994-13577074 43 1.52e-04 TTTCAATTCA GACAACAA TTGATAAGGT chrX:12241602-12241682 57 1.52e-04 ATTGGTGACC GACAACAA ATCGCAACAT chrV:4964835-4964915 30 1.52e-04 CATTTCAGTT GACAACAA TACTGATGCA chrV:15015243-15015323 57 1.52e-04 TGTTTATCAG GAAAACAA TTGGAGTTCT chrII:10028383-10028463 35 1.52e-04 TGTCAGAGAT GACAACAA AATGTGACAA chrIV:9353887-9353967 47 1.52e-04 CAATTGAAAG GACAACAA ACTGTCGTAA chrII:13495855-13495935 59 2.41e-04 TATCTTATCA GTAAACAT TATAGTTCAC chrI:10227016-10227096 15 2.41e-04 TCTTCTCGGG GACAACAC ACAAGAGTGC chrII:5805467-5805547 9 2.41e-04 TAGAGTCT GAAAACAC ATATTTATTT chrV:17297530-17297610 41 2.41e-04 TTAGACACAT GACAACAC CAGTCTGTTG chrV:13733866-13733946 34 2.41e-04 GACCACGAAT GTAAACAT ACTGTAAACA chrI:154082-154162 14 2.41e-04 TTATTTAGGT GTAAACAT GAACACTTTC chrI:7307189-7307269 69 2.41e-04 ATGTTTGAAC GTAAACAT GTCG chrV:3969840-3969920 43 2.41e-04 CACAAAACAT GTCAACAT ATTGATAAGA chrX:10916363-10916443 55 2.41e-04 TATTATTCCA GAAAACAC TGCTTTGGTA chrII:13763172-13763252 68 2.41e-04 CCAGTAAGAT GTCAACAT CTTAA chrX:6884608-6884688 33 2.41e-04 GTATTCGGTT GTCAACAT GGAAATTTAC chrX:312405-312485 39 2.41e-04 CTTTTTTTCT GACAACAC TTTTATCTTC chrII:6344672-6344752 6 2.41e-04 GGACT GTAAACAT GTGAACAGGA chrV:9173107-9173187 39 3.53e-04 AGGGAGTTCA ATAAACAA ATGACCAAAA chrV:17598985-17599065 70 3.53e-04 AAAGAGTTGA ATCAACAA AAA chrIV:15849785-15849865 56 3.53e-04 TCCCGACAGA ATCAACAA TTTGCCATTT chrIII:13388770-13388850 55 3.53e-04 TCGGTCAATT ATCAACAA ATTGTTCGAT chrII:2420799-2420879 60 3.53e-04 TAATTTCGAC ATCAACAA ATATCGCCTA chrII:7139210-7139290 73 3.53e-04 CTCGTTTCTT ATCAACAA chrX:4981740-4981820 49 3.53e-04 CCATCACCTT ATCAACAA AAAGCTTGTT chrV:19377145-19377225 46 3.53e-04 TTCAAAATTA ATCAACAA TTTTATCAGT chrX:5834899-5834979 34 3.53e-04 CGAAATAAGC ATAAACAA GAATTATGAT chrX:10631972-10632052 38 3.53e-04 CAGTGGAACG ATAAACAA ATATTTTCTA chrIV:17175139-17175219 42 3.53e-04 TTTTTATTTT ATCAACAA GTGGCTATGA chrV:14165904-14165984 35 3.53e-04 GCCGAATGAC ATAAACAA CTTTTGCAAA chrX:2966418-2966498 61 3.53e-04 TGTCAGAGTA ATCAACAA GAAGTGTGGA chrX:1094483-1094563 62 3.83e-04 ACTTGTAATT GTACACAA ACAAGGAATG chrV:13532628-13532708 42 3.83e-04 GAGCCGGCTG GTACACAA CAACAGCAAT chrII:8074270-8074350 15 4.74e-04 AAATTATCCT GAAAACAT ATTTATCATC chrIV:6210718-6210798 51 4.74e-04 CATGATGAAG GCAAACAA ACCATATTTT chrIV:12962751-12962831 68 4.74e-04 TGCTTTTTCT GAAAACAT TGTCA chrX:12222912-12222992 59 4.74e-04 AAACATCAAT GAAAACAT TATTATATTT chrIII:8017212-8017292 68 4.74e-04 AAATAGCGGA GAAAACAT GTTTT chrX:8758124-8758204 64 5.32e-04 AAAAATGTCA ATAAACAC CTGATTCGT chrV:17723353-17723433 51 5.32e-04 CCATCTGATG ATAAACAC GGTTTTATTG chrI:4539975-4540055 44 5.32e-04 ATTCTTTCTT ATCAACAC AAACATTTCC chrX:16041947-16042027 47 5.32e-04 ACAAATGGTC ATCAACAC TATAGAGATA chrIII:1676738-1676818 54 5.80e-04 TTACTAGTAC GTACACAC ACACAAATTG chrII:6025099-6025179 50 5.80e-04 GGGTATTTAT GTACACAC AATTGAGACT chrV:18957563-18957643 47 5.80e-04 AACATACAAA GTACACAC AGAAACGCGG chrX:15050164-15050244 72 5.80e-04 GACAATCGAA GTAAACAG A chrX:5509277-5509357 62 5.80e-04 AGTATTTTGG GTAAACAG AAGAAACACG chrX:6121456-6121536 17 5.96e-04 TTGTTTGTTC GCAAACAC TTCTGATAAA chrX:17092579-17092659 20 7.12e-04 TCTTTCTCTC AACAACAA TGTGCTGGCC chrX:4284152-4284232 20 7.12e-04 TTTATGGTTG AAAAACAA AAAAACCAGT chrIV:6553705-6553785 23 7.12e-04 TCAGTTATTG AAAAACAA TTTTATTGTC chrX:7332889-7332969 68 7.12e-04 GACGAGAAAA AAAAACAA AAATA chrX:9105225-9105305 24 7.12e-04 ACCCGACCAC AACAACAA CTACTAGCGG chrX:9705404-9705484 7 7.12e-04 TCAGCC AAAAACAA AGTTGTTTAC chrIV:4976155-4976235 29 7.12e-04 ATCCAAATAC AAAAACAA AGTCTTATCA chrX:16016980-16017060 60 7.82e-04 TGAGAAAAAG GAACACAA CAAACTAGAT chrV:14324621-14324701 12 7.82e-04 TGTTGAAATG GAACACAA AACAGTCAGT chrIII:531063-531143 67 7.82e-04 TTTTCATCTC GAACACAA CAAAAC chrX:2369214-2369294 47 9.50e-04 ACATTCAACA ATAAACAT TTGTGAGTCA chrIV:6185761-6185841 25 9.50e-04 TTTTCCACTC AAAAACAC TGATGACGAT chrV:3482775-3482855 56 9.50e-04 GCTGAAAATG AAAAACAC ATGAAACACA chrIV:7094551-7094631 14 9.50e-04 GAGAGGAGTG ATAAACAT ATAAAAAATA chrX:17626752-17626832 54 9.50e-04 TCCAATCACG ATAAACAT TCTCGCATTG chrIV:2080499-2080579 56 9.50e-04 ATAATCGTAG ATCAACAT GATAAGCACA chrV:15715768-15715848 46 9.50e-04 ATGTGGTGGC ATAAACAT GTTTGTTTTT chrV:6575855-6575935 6 1.05e-03 AGGAA GTACACAT AAACTGATAT chrIII:6088111-6088191 16 1.05e-03 CACTAAACAG GTACACAT TTCTTATCAG chrV:5666206-5666286 67 1.05e-03 AACACGAAAC GACAACAG ATGATA chrIII:9288718-9288798 16 1.05e-03 GTTGTTTACA GTCCACAT ATGTAAGAGT chrIV:7734332-7734412 72 1.05e-03 GTTATCATTA GAAAACAG T chrV:17897076-17897156 18 1.05e-03 GCTTGAAATT GACAACAG TGAGAAGAGA chrX:15771600-15771680 16 1.05e-03 CGCAGGAAAA GAAAACAG ATAAGAGTAG chrV:15402015-15402095 69 1.08e-03 AGTTTGCTAT GCAAACAT GTCT chrI:5207722-5207802 12 1.12e-03 CAAAAAATAA GATAACAA GATGACCAGT chrX:8447674-8447754 11 1.12e-03 TTAAAAATTT GATAACAA TATTTGTTAT chrIV:49932-50012 55 1.12e-03 AAGAGGAGGC GATAACAA TCGATTATCA chrV:7548183-7548263 34 1.12e-03 AAAATTTAGT GATAACAA ACGGTACGTG chrII:3990863-3990943 57 1.12e-03 AATACGCTGT GATAACAA ATTTCGAAAT chrV:17891516-17891596 44 1.12e-03 ATGATATGAT GATAACAA ATTTGTTATT chrX:7975898-7975978 3 1.21e-03 AC GGCAACAA GCATTTTCAA chrX:12350371-12350451 27 1.41e-03 CTCTCCCCAT GTCAACCA CATTGGTTGT chrX:5109282-5109362 23 1.41e-03 TAATCACTAG ACAAACAA CCTTTTTATT chrX:3551363-3551443 52 1.41e-03 ATGCCTAGCC GTCAACCA AAATTGTTTA chrX:7808521-7808601 37 1.41e-03 AATGTTGCCG AAAAACAT GTTTTGCTTT chrIII:3546973-3547053 65 1.41e-03 CTGATACACT GTAAACCA GACTTTGA chrII:6260024-6260104 71 1.41e-03 AAAAAAGGGG ACAAACAA GT chrII:3296795-3296875 47 1.41e-03 AACAACGTTA AAAAACAT TCAATTGATA chrII:8948150-8948230 38 1.41e-03 TTTCACACTG ACAAACAA ATATTTGGCA chrI:13815955-13816035 1 1.41e-03 . ACAAACAA AATGTACCAC chrI:6592016-6592096 14 1.41e-03 TACATATTGA ACAAACAA ACAGTTTTTC chrII:7420314-7420394 5 1.41e-03 TGGA AAAAACAT TCACATGACA chrV:16610953-16611033 37 1.52e-03 ATAAGAAGCA GATAACAC AAGTTGTGTC chrII:10490490-10490570 14 1.52e-03 TGATACCTCT GATAACAC TGGATTGTTT chrX:17637704-17637784 65 1.52e-03 AGAAGCAACT GAACACAT TATTTTAG chrX:3814984-3815064 51 1.62e-03 AAAATATGTG GGAAACAC GGCAGTTTCC chrX:17510627-17510707 56 1.84e-03 AGCATTTTTG AAACACAA AAGACGTTGT chrI:9604530-9604610 72 1.91e-03 AAAGTGCATT GTGAACAA C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWMAACAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:6612985-6613065 5.9e-05 52_[+2]_20 chrIII:6346152-6346232 5.9e-05 37_[+2]_35 chrV:18371738-18371818 5.9e-05 50_[+2]_22 chrIII:5221997-5222077 5.9e-05 14_[+2]_58 chrIV:9343345-9343425 5.9e-05 68_[+2]_4 chrI:5421820-5421900 5.9e-05 28_[+2]_44 chrII:5893519-5893599 5.9e-05 71_[+2]_1 chrX:11992426-11992506 5.9e-05 45_[+2]_27 chrX:1371836-1371916 5.9e-05 [+2]_72 chrV:16610261-16610341 5.9e-05 71_[+2]_1 chrV:20423532-20423612 5.9e-05 52_[+2]_20 chrIII:1342641-1342721 5.9e-05 43_[+2]_29 chrIV:5669611-5669691 5.9e-05 57_[+2]_15 chrV:11863057-11863137 5.9e-05 69_[+2]_3 chrX:3785237-3785317 5.9e-05 47_[+2]_25 chrX:7828130-7828210 5.9e-05 48_[+2]_24 chrV:16621047-16621127 5.9e-05 29_[+2]_43 chrX:3141822-3141902 5.9e-05 6_[+2]_66 chrII:8738403-8738483 5.9e-05 35_[+2]_37 chrIII:9582415-9582495 5.9e-05 55_[+2]_17 chrIII:6895850-6895930 5.9e-05 7_[+2]_65 chrIII:13020900-13020980 5.9e-05 44_[+2]_28 chrIV:5583348-5583428 5.9e-05 23_[+2]_49 chrII:7778426-7778506 5.9e-05 37_[+2]_35 chrX:6667576-6667656 9e-05 33_[+2]_39 chrIII:10629961-10630041 9e-05 45_[+2]_27 chrV:16080868-16080948 9e-05 27_[+2]_45 chrV:3580599-3580679 9e-05 51_[+2]_21 chrIV:14891073-14891153 9e-05 28_[+2]_44 chrII:15170063-15170143 9e-05 30_[+2]_42 chrX:10976956-10977036 9e-05 62_[+2]_10 chrV:9197295-9197375 9e-05 48_[+2]_24 chrIII:5965978-5966058 9e-05 41_[+2]_31 chrV:13576994-13577074 0.00015 42_[+2]_30 chrX:12241602-12241682 0.00015 56_[+2]_16 chrV:4964835-4964915 0.00015 29_[+2]_43 chrV:15015243-15015323 0.00015 56_[+2]_16 chrII:10028383-10028463 0.00015 34_[+2]_38 chrIV:9353887-9353967 0.00015 46_[+2]_26 chrII:13495855-13495935 0.00024 58_[+2]_14 chrI:10227016-10227096 0.00024 14_[+2]_58 chrII:5805467-5805547 0.00024 8_[+2]_64 chrV:17297530-17297610 0.00024 40_[+2]_32 chrV:13733866-13733946 0.00024 33_[+2]_39 chrI:154082-154162 0.00024 13_[+2]_59 chrI:7307189-7307269 0.00024 68_[+2]_4 chrV:3969840-3969920 0.00024 42_[+2]_30 chrX:10916363-10916443 0.00024 54_[+2]_18 chrII:13763172-13763252 0.00024 67_[+2]_5 chrX:6884608-6884688 0.00024 32_[+2]_40 chrX:312405-312485 0.00024 38_[+2]_34 chrII:6344672-6344752 0.00024 5_[+2]_67 chrV:9173107-9173187 0.00035 38_[+2]_34 chrV:17598985-17599065 0.00035 69_[+2]_3 chrIV:15849785-15849865 0.00035 55_[+2]_17 chrIII:13388770-13388850 0.00035 54_[+2]_18 chrII:2420799-2420879 0.00035 59_[+2]_13 chrII:7139210-7139290 0.00035 72_[+2] chrX:4981740-4981820 0.00035 48_[+2]_24 chrV:19377145-19377225 0.00035 45_[+2]_27 chrX:5834899-5834979 0.00035 33_[+2]_39 chrX:10631972-10632052 0.00035 37_[+2]_35 chrIV:17175139-17175219 0.00035 41_[+2]_31 chrV:14165904-14165984 0.00035 34_[+2]_38 chrX:2966418-2966498 0.00035 60_[+2]_12 chrX:1094483-1094563 0.00038 61_[+2]_11 chrV:13532628-13532708 0.00038 41_[+2]_31 chrII:8074270-8074350 0.00047 14_[+2]_58 chrIV:6210718-6210798 0.00047 50_[+2]_22 chrIV:12962751-12962831 0.00047 67_[+2]_5 chrX:12222912-12222992 0.00047 58_[+2]_14 chrIII:8017212-8017292 0.00047 67_[+2]_5 chrX:8758124-8758204 0.00053 63_[+2]_9 chrV:17723353-17723433 0.00053 50_[+2]_22 chrI:4539975-4540055 0.00053 43_[+2]_29 chrX:16041947-16042027 0.00053 46_[+2]_26 chrIII:1676738-1676818 0.00058 53_[+2]_19 chrII:6025099-6025179 0.00058 49_[+2]_23 chrV:18957563-18957643 0.00058 46_[+2]_26 chrX:15050164-15050244 0.00058 71_[+2]_1 chrX:5509277-5509357 0.00058 61_[+2]_11 chrX:6121456-6121536 0.0006 16_[+2]_56 chrX:17092579-17092659 0.00071 19_[+2]_53 chrX:4284152-4284232 0.00071 19_[+2]_53 chrIV:6553705-6553785 0.00071 22_[+2]_50 chrX:7332889-7332969 0.00071 67_[+2]_5 chrX:9105225-9105305 0.00071 23_[+2]_49 chrX:9705404-9705484 0.00071 6_[+2]_66 chrIV:4976155-4976235 0.00071 28_[+2]_44 chrX:16016980-16017060 0.00078 59_[+2]_13 chrV:14324621-14324701 0.00078 11_[+2]_61 chrIII:531063-531143 0.00078 66_[+2]_6 chrX:2369214-2369294 0.00095 46_[+2]_26 chrIV:6185761-6185841 0.00095 24_[+2]_48 chrV:3482775-3482855 0.00095 55_[+2]_17 chrIV:7094551-7094631 0.00095 13_[+2]_59 chrX:17626752-17626832 0.00095 53_[+2]_19 chrIV:2080499-2080579 0.00095 55_[+2]_17 chrV:15715768-15715848 0.00095 45_[+2]_27 chrV:6575855-6575935 0.001 5_[+2]_67 chrIII:6088111-6088191 0.001 15_[+2]_57 chrV:5666206-5666286 0.001 66_[+2]_6 chrIII:9288718-9288798 0.001 15_[+2]_57 chrIV:7734332-7734412 0.001 71_[+2]_1 chrV:17897076-17897156 0.001 17_[+2]_55 chrX:15771600-15771680 0.001 15_[+2]_57 chrV:15402015-15402095 0.0011 68_[+2]_4 chrI:5207722-5207802 0.0011 11_[+2]_61 chrX:8447674-8447754 0.0011 10_[+2]_62 chrIV:49932-50012 0.0011 54_[+2]_18 chrV:7548183-7548263 0.0011 33_[+2]_39 chrII:3990863-3990943 0.0011 56_[+2]_16 chrV:17891516-17891596 0.0011 43_[+2]_29 chrX:7975898-7975978 0.0012 2_[+2]_70 chrX:12350371-12350451 0.0014 26_[+2]_46 chrX:5109282-5109362 0.0014 22_[+2]_50 chrX:3551363-3551443 0.0014 51_[+2]_21 chrX:7808521-7808601 0.0014 36_[+2]_36 chrIII:3546973-3547053 0.0014 64_[+2]_8 chrII:6260024-6260104 0.0014 70_[+2]_2 chrII:3296795-3296875 0.0014 46_[+2]_26 chrII:8948150-8948230 0.0014 37_[+2]_35 chrI:13815955-13816035 0.0014 [+2]_72 chrI:6592016-6592096 0.0014 13_[+2]_59 chrII:7420314-7420394 0.0014 4_[+2]_68 chrV:16610953-16611033 0.0015 36_[+2]_36 chrII:10490490-10490570 0.0015 13_[+2]_59 chrX:17637704-17637784 0.0015 64_[+2]_8 chrX:3814984-3815064 0.0016 50_[+2]_22 chrX:17510627-17510707 0.0018 55_[+2]_17 chrI:9604530-9604610 0.0019 71_[+2]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWMAACAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GWMAACAA width=8 seqs=131 chrV:6612985-6613065 ( 53) GTAAACAA 1 chrIII:6346152-6346232 ( 38) GTAAACAA 1 chrV:18371738-18371818 ( 51) GTAAACAA 1 chrIII:5221997-5222077 ( 15) GTAAACAA 1 chrIV:9343345-9343425 ( 69) GTAAACAA 1 chrI:5421820-5421900 ( 29) GTCAACAA 1 chrII:5893519-5893599 ( 72) GTAAACAA 1 chrX:11992426-11992506 ( 46) GTCAACAA 1 chrX:1371836-1371916 ( 1) GTCAACAA 1 chrV:16610261-16610341 ( 72) GTAAACAA 1 chrV:20423532-20423612 ( 53) GTCAACAA 1 chrIII:1342641-1342721 ( 44) GTAAACAA 1 chrIV:5669611-5669691 ( 58) GTCAACAA 1 chrV:11863057-11863137 ( 70) GTCAACAA 1 chrX:3785237-3785317 ( 48) GTAAACAA 1 chrX:7828130-7828210 ( 49) GTAAACAA 1 chrV:16621047-16621127 ( 30) GTAAACAA 1 chrX:3141822-3141902 ( 7) GTAAACAA 1 chrII:8738403-8738483 ( 36) GTAAACAA 1 chrIII:9582415-9582495 ( 56) GTAAACAA 1 chrIII:6895850-6895930 ( 8) GTCAACAA 1 chrIII:13020900-13020980 ( 45) GTAAACAA 1 chrIV:5583348-5583428 ( 24) GTAAACAA 1 chrII:7778426-7778506 ( 38) GTCAACAA 1 chrX:6667576-6667656 ( 34) GTCAACAC 1 chrIII:10629961-10630041 ( 46) GTAAACAC 1 chrV:16080868-16080948 ( 28) GTAAACAC 1 chrV:3580599-3580679 ( 52) GTCAACAC 1 chrIV:14891073-14891153 ( 29) GTAAACAC 1 chrII:15170063-15170143 ( 31) GTCAACAC 1 chrX:10976956-10977036 ( 63) GTAAACAC 1 chrV:9197295-9197375 ( 49) GTAAACAC 1 chrIII:5965978-5966058 ( 42) GTAAACAC 1 chrV:13576994-13577074 ( 43) GACAACAA 1 chrX:12241602-12241682 ( 57) GACAACAA 1 chrV:4964835-4964915 ( 30) GACAACAA 1 chrV:15015243-15015323 ( 57) GAAAACAA 1 chrII:10028383-10028463 ( 35) GACAACAA 1 chrIV:9353887-9353967 ( 47) GACAACAA 1 chrII:13495855-13495935 ( 59) GTAAACAT 1 chrI:10227016-10227096 ( 15) GACAACAC 1 chrII:5805467-5805547 ( 9) GAAAACAC 1 chrV:17297530-17297610 ( 41) GACAACAC 1 chrV:13733866-13733946 ( 34) GTAAACAT 1 chrI:154082-154162 ( 14) GTAAACAT 1 chrI:7307189-7307269 ( 69) GTAAACAT 1 chrV:3969840-3969920 ( 43) GTCAACAT 1 chrX:10916363-10916443 ( 55) GAAAACAC 1 chrII:13763172-13763252 ( 68) GTCAACAT 1 chrX:6884608-6884688 ( 33) GTCAACAT 1 chrX:312405-312485 ( 39) GACAACAC 1 chrII:6344672-6344752 ( 6) GTAAACAT 1 chrV:9173107-9173187 ( 39) ATAAACAA 1 chrV:17598985-17599065 ( 70) ATCAACAA 1 chrIV:15849785-15849865 ( 56) ATCAACAA 1 chrIII:13388770-13388850 ( 55) ATCAACAA 1 chrII:2420799-2420879 ( 60) ATCAACAA 1 chrII:7139210-7139290 ( 73) ATCAACAA 1 chrX:4981740-4981820 ( 49) ATCAACAA 1 chrV:19377145-19377225 ( 46) ATCAACAA 1 chrX:5834899-5834979 ( 34) ATAAACAA 1 chrX:10631972-10632052 ( 38) ATAAACAA 1 chrIV:17175139-17175219 ( 42) ATCAACAA 1 chrV:14165904-14165984 ( 35) ATAAACAA 1 chrX:2966418-2966498 ( 61) ATCAACAA 1 chrX:1094483-1094563 ( 62) GTACACAA 1 chrV:13532628-13532708 ( 42) GTACACAA 1 chrII:8074270-8074350 ( 15) GAAAACAT 1 chrIV:6210718-6210798 ( 51) GCAAACAA 1 chrIV:12962751-12962831 ( 68) GAAAACAT 1 chrX:12222912-12222992 ( 59) GAAAACAT 1 chrIII:8017212-8017292 ( 68) GAAAACAT 1 chrX:8758124-8758204 ( 64) ATAAACAC 1 chrV:17723353-17723433 ( 51) ATAAACAC 1 chrI:4539975-4540055 ( 44) ATCAACAC 1 chrX:16041947-16042027 ( 47) ATCAACAC 1 chrIII:1676738-1676818 ( 54) GTACACAC 1 chrII:6025099-6025179 ( 50) GTACACAC 1 chrV:18957563-18957643 ( 47) GTACACAC 1 chrX:15050164-15050244 ( 72) GTAAACAG 1 chrX:5509277-5509357 ( 62) GTAAACAG 1 chrX:6121456-6121536 ( 17) GCAAACAC 1 chrX:17092579-17092659 ( 20) AACAACAA 1 chrX:4284152-4284232 ( 20) AAAAACAA 1 chrIV:6553705-6553785 ( 23) AAAAACAA 1 chrX:7332889-7332969 ( 68) AAAAACAA 1 chrX:9105225-9105305 ( 24) AACAACAA 1 chrX:9705404-9705484 ( 7) AAAAACAA 1 chrIV:4976155-4976235 ( 29) AAAAACAA 1 chrX:16016980-16017060 ( 60) GAACACAA 1 chrV:14324621-14324701 ( 12) GAACACAA 1 chrIII:531063-531143 ( 67) GAACACAA 1 chrX:2369214-2369294 ( 47) ATAAACAT 1 chrIV:6185761-6185841 ( 25) AAAAACAC 1 chrV:3482775-3482855 ( 56) AAAAACAC 1 chrIV:7094551-7094631 ( 14) ATAAACAT 1 chrX:17626752-17626832 ( 54) ATAAACAT 1 chrIV:2080499-2080579 ( 56) ATCAACAT 1 chrV:15715768-15715848 ( 46) ATAAACAT 1 chrV:6575855-6575935 ( 6) GTACACAT 1 chrIII:6088111-6088191 ( 16) GTACACAT 1 chrV:5666206-5666286 ( 67) GACAACAG 1 chrIII:9288718-9288798 ( 16) GTCCACAT 1 chrIV:7734332-7734412 ( 72) GAAAACAG 1 chrV:17897076-17897156 ( 18) GACAACAG 1 chrX:15771600-15771680 ( 16) GAAAACAG 1 chrV:15402015-15402095 ( 69) GCAAACAT 1 chrI:5207722-5207802 ( 12) GATAACAA 1 chrX:8447674-8447754 ( 11) GATAACAA 1 chrIV:49932-50012 ( 55) GATAACAA 1 chrV:7548183-7548263 ( 34) GATAACAA 1 chrII:3990863-3990943 ( 57) GATAACAA 1 chrV:17891516-17891596 ( 44) GATAACAA 1 chrX:7975898-7975978 ( 3) GGCAACAA 1 chrX:12350371-12350451 ( 27) GTCAACCA 1 chrX:5109282-5109362 ( 23) ACAAACAA 1 chrX:3551363-3551443 ( 52) GTCAACCA 1 chrX:7808521-7808601 ( 37) AAAAACAT 1 chrIII:3546973-3547053 ( 65) GTAAACCA 1 chrII:6260024-6260104 ( 71) ACAAACAA 1 chrII:3296795-3296875 ( 47) AAAAACAT 1 chrII:8948150-8948230 ( 38) ACAAACAA 1 chrI:13815955-13816035 ( 1) ACAAACAA 1 chrI:6592016-6592096 ( 14) ACAAACAA 1 chrII:7420314-7420394 ( 5) AAAAACAT 1 chrV:16610953-16611033 ( 37) GATAACAC 1 chrII:10490490-10490570 ( 14) GATAACAC 1 chrX:17637704-17637784 ( 65) GAACACAT 1 chrX:3814984-3815064 ( 51) GGAAACAC 1 chrX:17510627-17510707 ( 56) AAACACAA 1 chrI:9604530-9604610 ( 72) GTGAACAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWMAACAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.87522 E= 2.4e-029 -12 -1368 198 -1368 2 -149 -353 88 88 90 -453 -239 144 -79 -1368 -1368 159 -1368 -1368 -1368 -1368 254 -1368 -1368 156 -291 -1368 -1368 75 26 -194 -75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWMAACAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 131 E= 2.4e-029 0.305344 0.000000 0.694656 0.000000 0.335878 0.061069 0.015267 0.587786 0.610687 0.320611 0.007634 0.061069 0.900763 0.099237 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.977099 0.022901 0.000000 0.000000 0.557252 0.206107 0.045802 0.190840 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWMAACAA MEME-2 regular expression -------------------------------------------------------------------------------- [GA][TA][AC]AACA[AC] -------------------------------------------------------------------------------- Time 8.90 secs. ******************************************************************************** ******************************************************************************** MOTIF STTATCAG MEME-3 width = 8 sites = 46 llr = 394 E-value = 5.3e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif STTATCAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1::a::a2 pos.-specific C 5::::a:: probability G 3::::::7 matrix T 1aa:a::1 bits 2.5 * 2.3 * 2.0 * 1.8 * Relative 1.5 ****** Entropy 1.3 ****** (12.3 bits) 1.0 ******* 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CTTATCAG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTATCAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:8009798-8009878 72 1.88e-05 ATTTTACCCG CTTATCAG C chrII:1297820-1297900 12 1.88e-05 ATTTAAATTT CTTATCAG TATTTTTTTA chrIII:6088111-6088191 26 1.88e-05 GTACACATTT CTTATCAG TAATTATCTT chrIV:13024080-13024160 51 1.88e-05 ATTTGGGTTT CTTATCAG CCATTTACAC chrX:1371836-1371916 35 1.88e-05 GGTCACCGCT CTTATCAG TCTTATCAGT chrX:9676923-9677003 48 1.88e-05 GTACGTTTGT CTTATCAG TAACTCTTTT chrII:10490490-10490570 71 1.88e-05 TTTCTGACAT CTTATCAG TG chrX:10981552-10981632 62 1.88e-05 TGCGCCTTGC CTTATCAG CAAAAAACGT chrV:3482775-3482855 6 1.88e-05 CTCTC CTTATCAG TTGCTCTTCA chrV:15015243-15015323 37 1.88e-05 CGAGAAATTA CTTATCAG TATGTTTATC chrV:15479245-15479325 25 1.88e-05 TGAAAGAAAC CTTATCAG CGTTTAATTT chrX:5374892-5374972 42 1.88e-05 CACCCAGTTT CTTATCAG TAACATTTTC chrX:12219645-12219725 11 1.88e-05 TCAGGCAATC CTTATCAG TGATTCAAAC chrIV:4976155-4976235 40 1.88e-05 AAAACAAAGT CTTATCAG AACGTCTGTT chrX:2320697-2320777 27 3.80e-05 GAGCGTTTTT GTTATCAG GGAGAACTAC chrV:19377145-19377225 73 3.80e-05 TTTTCTTCCT GTTATCAG chrX:8423341-8423421 36 3.80e-05 TTTTGAAATA GTTATCAG TTATTGTTTG chrX:2369214-2369294 15 3.80e-05 AAGCCGAACC GTTATCAG TCACAATTCC chrII:13763172-13763252 13 3.80e-05 AGTAAATATT GTTATCAG GTTTGATTAT chrV:3580599-3580679 3 3.80e-05 GC GTTATCAG TTTATCGGTA chrX:313049-313129 38 3.80e-05 CCCAACTCTT GTTATCAG TACGACGCGT chrV:17897076-17897156 56 3.80e-05 AATTGAAGCT GTTATCAG TATTCCCCAT chrX:12596080-12596160 35 7.35e-05 TATTTATAGT CTTATCAA CTCTTAACGC chrII:9937040-9937120 21 7.35e-05 TATTTGATTT CTTATCAA TATTATTTAC chrIV:12962751-12962831 13 7.35e-05 TTGGCATTTT CTTATCAA CTACGTTTTC chrV:15316311-15316391 54 7.35e-05 TCATCCGTAT CTTATCAA TATATAGCGG chrX:3785237-3785317 63 7.35e-05 CAACTCATTC CTTATCAA TGGCAAACGC chrV:14165904-14165984 9 7.35e-05 TGAAAATT CTTATCAA TAAACGTTGC chrIII:6989366-6989446 27 1.09e-04 TTATATATGT TTTATCAG TTGATGAATT chrX:11261908-11261988 10 1.09e-04 CTCACTTAT TTTATCAG TTAGTGTGGT chrII:3296795-3296875 1 1.09e-04 . TTTATCAG CAAATAAGTT chrX:439150-439230 62 1.09e-04 TCACAAACCG TTTATCAG TGTGAATTGT chrII:11155131-11155211 10 1.09e-04 TTGAAATAT TTTATCAG TTGAGGTGTT chrX:12226143-12226223 27 1.09e-04 CAAAAGGCAT TTTATCAG AAGTGCAAAC chrII:5561519-5561599 34 1.43e-04 ACATATTGTC CTTATCAT CAAAACACTC chrV:7548183-7548263 57 1.43e-04 ACGTGCCGCT CTTATCAT TGGCTACGTG chrV:11863057-11863137 22 1.43e-04 TCAGATAGGC CTTATCAT ACTAATTTCA chrIII:4373053-4373133 43 1.43e-04 CGCAATCATT CTTATCAT GTGCACCGGT chrV:6575855-6575935 62 1.79e-04 ATCGCTCATC GTTATCAA TACAACACAC chrX:312405-312485 59 1.79e-04 TTATCTTCCT GTTATCAA CAGCTGGGTT chrX:17637704-17637784 44 1.79e-04 ATTTACAATT GTTATCAA AAAAGAAGCA chrI:13815955-13816035 63 2.15e-04 ACTCATGTTC ATTATCAG TTTTAGGTAT chrIII:1342641-1342721 55 2.15e-04 TAAACAATTT ATTATCAG CTCATACCTA chrII:10373221-10373301 28 2.15e-04 ATTATCATTC ATTATCAG TGATTGTCAT chrX:551471-551551 22 2.50e-04 TTGACAAACC GTTATCAT TTTTCTTTAG chrIV:7734332-7734412 62 2.50e-04 ATCAGTTTAT GTTATCAT TAGAAAACAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTATCAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:8009798-8009878 1.9e-05 71_[+3]_1 chrII:1297820-1297900 1.9e-05 11_[+3]_61 chrIII:6088111-6088191 1.9e-05 25_[+3]_47 chrIV:13024080-13024160 1.9e-05 50_[+3]_22 chrX:1371836-1371916 1.9e-05 34_[+3]_38 chrX:9676923-9677003 1.9e-05 47_[+3]_25 chrII:10490490-10490570 1.9e-05 70_[+3]_2 chrX:10981552-10981632 1.9e-05 61_[+3]_11 chrV:3482775-3482855 1.9e-05 5_[+3]_67 chrV:15015243-15015323 1.9e-05 36_[+3]_36 chrV:15479245-15479325 1.9e-05 24_[+3]_48 chrX:5374892-5374972 1.9e-05 41_[+3]_31 chrX:12219645-12219725 1.9e-05 10_[+3]_62 chrIV:4976155-4976235 1.9e-05 39_[+3]_33 chrX:2320697-2320777 3.8e-05 26_[+3]_46 chrV:19377145-19377225 3.8e-05 72_[+3] chrX:8423341-8423421 3.8e-05 35_[+3]_37 chrX:2369214-2369294 3.8e-05 14_[+3]_58 chrII:13763172-13763252 3.8e-05 12_[+3]_60 chrV:3580599-3580679 3.8e-05 2_[+3]_70 chrX:313049-313129 3.8e-05 37_[+3]_35 chrV:17897076-17897156 3.8e-05 55_[+3]_17 chrX:12596080-12596160 7.4e-05 34_[+3]_38 chrII:9937040-9937120 7.4e-05 20_[+3]_52 chrIV:12962751-12962831 7.4e-05 12_[+3]_60 chrV:15316311-15316391 7.4e-05 53_[+3]_19 chrX:3785237-3785317 7.4e-05 62_[+3]_10 chrV:14165904-14165984 7.4e-05 8_[+3]_64 chrIII:6989366-6989446 0.00011 26_[+3]_46 chrX:11261908-11261988 0.00011 9_[+3]_63 chrII:3296795-3296875 0.00011 [+3]_72 chrX:439150-439230 0.00011 61_[+3]_11 chrII:11155131-11155211 0.00011 9_[+3]_63 chrX:12226143-12226223 0.00011 26_[+3]_46 chrII:5561519-5561599 0.00014 33_[+3]_39 chrV:7548183-7548263 0.00014 56_[+3]_16 chrV:11863057-11863137 0.00014 21_[+3]_51 chrIII:4373053-4373133 0.00014 42_[+3]_30 chrV:6575855-6575935 0.00018 61_[+3]_11 chrX:312405-312485 0.00018 58_[+3]_14 chrX:17637704-17637784 0.00018 43_[+3]_29 chrI:13815955-13816035 0.00022 62_[+3]_10 chrIII:1342641-1342721 0.00022 54_[+3]_18 chrII:10373221-10373301 0.00022 27_[+3]_45 chrX:551471-551551 0.00025 21_[+3]_51 chrIV:7734332-7734412 0.00025 61_[+3]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTATCAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF STTATCAG width=8 seqs=46 chrI:8009798-8009878 ( 72) CTTATCAG 1 chrII:1297820-1297900 ( 12) CTTATCAG 1 chrIII:6088111-6088191 ( 26) CTTATCAG 1 chrIV:13024080-13024160 ( 51) CTTATCAG 1 chrX:1371836-1371916 ( 35) CTTATCAG 1 chrX:9676923-9677003 ( 48) CTTATCAG 1 chrII:10490490-10490570 ( 71) CTTATCAG 1 chrX:10981552-10981632 ( 62) CTTATCAG 1 chrV:3482775-3482855 ( 6) CTTATCAG 1 chrV:15015243-15015323 ( 37) CTTATCAG 1 chrV:15479245-15479325 ( 25) CTTATCAG 1 chrX:5374892-5374972 ( 42) CTTATCAG 1 chrX:12219645-12219725 ( 11) CTTATCAG 1 chrIV:4976155-4976235 ( 40) CTTATCAG 1 chrX:2320697-2320777 ( 27) GTTATCAG 1 chrV:19377145-19377225 ( 73) GTTATCAG 1 chrX:8423341-8423421 ( 36) GTTATCAG 1 chrX:2369214-2369294 ( 15) GTTATCAG 1 chrII:13763172-13763252 ( 13) GTTATCAG 1 chrV:3580599-3580679 ( 3) GTTATCAG 1 chrX:313049-313129 ( 38) GTTATCAG 1 chrV:17897076-17897156 ( 56) GTTATCAG 1 chrX:12596080-12596160 ( 35) CTTATCAA 1 chrII:9937040-9937120 ( 21) CTTATCAA 1 chrIV:12962751-12962831 ( 13) CTTATCAA 1 chrV:15316311-15316391 ( 54) CTTATCAA 1 chrX:3785237-3785317 ( 63) CTTATCAA 1 chrV:14165904-14165984 ( 9) CTTATCAA 1 chrIII:6989366-6989446 ( 27) TTTATCAG 1 chrX:11261908-11261988 ( 10) TTTATCAG 1 chrII:3296795-3296875 ( 1) TTTATCAG 1 chrX:439150-439230 ( 62) TTTATCAG 1 chrII:11155131-11155211 ( 10) TTTATCAG 1 chrX:12226143-12226223 ( 27) TTTATCAG 1 chrII:5561519-5561599 ( 34) CTTATCAT 1 chrV:7548183-7548263 ( 57) CTTATCAT 1 chrV:11863057-11863137 ( 22) CTTATCAT 1 chrIII:4373053-4373133 ( 43) CTTATCAT 1 chrV:6575855-6575935 ( 62) GTTATCAA 1 chrX:312405-312485 ( 59) GTTATCAA 1 chrX:17637704-17637784 ( 44) GTTATCAA 1 chrI:13815955-13816035 ( 63) ATTATCAG 1 chrIII:1342641-1342721 ( 55) ATTATCAG 1 chrII:10373221-10373301 ( 28) ATTATCAG 1 chrX:551471-551551 ( 22) GTTATCAT 1 chrIV:7734332-7734412 ( 62) GTTATCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTATCAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1909 E= 5.3e-017 -235 160 68 -130 -1217 -1217 -1217 164 -1217 -1217 -1217 164 159 -1217 -1217 -1217 -1217 -1217 -1217 164 -1217 254 -1217 -1217 159 -1217 -1217 -1217 -76 -1217 194 -130 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTATCAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 5.3e-017 0.065217 0.521739 0.282609 0.130435 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.195652 0.000000 0.673913 0.130435 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STTATCAG MEME-3 regular expression -------------------------------------------------------------------------------- [CG]TTATCAG -------------------------------------------------------------------------------- Time 12.86 secs. ******************************************************************************** ******************************************************************************** MOTIF TGATAARA MEME-4 width = 8 sites = 62 llr = 464 E-value = 4.2e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGATAARA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 3:a:aa36 pos.-specific C 1:::::22 probability G :a::::52 matrix T 6::a:::: bits 2.5 * 2.3 * 2.0 * 1.8 * Relative 1.5 ***** Entropy 1.3 ***** (10.8 bits) 1.0 ***** 0.8 ****** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TGATAAGA consensus A AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATAARA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:17598985-17599065 12 3.85e-05 AGACGTAAAC TGATAAGA CTACGGCAGG chrIII:11822539-11822619 4 3.85e-05 GTT TGATAAGA TAAGGAAGCA chrIV:12196741-12196821 46 3.85e-05 CAACTCTTTT TGATAAGA AATCACCCTC chrI:2962385-2962465 27 3.85e-05 AAGAAGAAAA TGATAAGA AAAGGGATGG chrV:16610953-16611033 25 3.85e-05 ATTTAATAAC TGATAAGA AGCAGATAAC chrV:3969840-3969920 53 3.85e-05 GTCAACATAT TGATAAGA GACAAAATGA chrIII:5420443-5420523 62 3.85e-05 AAAATGAAAA TGATAAGA GAGAAAAGAA chrX:10916363-10916443 10 3.85e-05 AGTGACCAC TGATAAGA AAAAAACGTG chrIV:6185761-6185841 61 3.85e-05 CCGATTGCAT TGATAAGA TTGTTTTGAA chrIII:7031668-7031748 13 3.85e-05 CTGATAACAT TGATAAGA TTGGAATGTC chrX:7343387-7343467 33 3.85e-05 GTTACATGCT TGATAAGA AATTAATTTG chrX:3141822-3141902 69 3.85e-05 GGTCTGTAAT TGATAAGA GTAT chrV:14324621-14324701 52 3.85e-05 AGTATTCAAC TGATAAGA GTATCACCTG chrV:13576994-13577074 52 5.90e-05 AGACAACAAT TGATAAGG TTCAATTGGT chrIII:3980091-3980171 58 5.90e-05 ATTGGAAAAC TGATAAGG AAGCATAGAC chrV:20423532-20423612 69 5.90e-05 AAGCGAGAGG TGATAAGG ACCT chrII:3296795-3296875 60 7.89e-05 AACATTCAAT TGATAAGC GACTCATTGA chrII:3295353-3295433 48 7.89e-05 GTTATTAAAT TGATAAGC GAGTCATTGA chrIV:5669611-5669691 40 7.89e-05 AATGGGACGG TGATAAGC ATGAACTATT chrV:13532628-13532708 11 7.89e-05 GGAAACTGGC TGATAAGC TGAGTAGTTA chrIII:5666989-5667069 60 1.19e-04 ACTATTGAGA AGATAAGA AGAAATGGTT chrV:9173107-9173187 72 1.19e-04 GAATAACAAT AGATAAGA T chrI:10227016-10227096 45 1.19e-04 TGAGAAATAG AGATAAGA AGACAGTGAG chrX:16732766-16732846 32 1.19e-04 CAAGATTCAA AGATAAGA GATTTTTGTT chrII:6260024-6260104 37 1.19e-04 CGTAGGACAT AGATAAGA GGGCGAGCAA chrX:2262573-2262653 29 1.19e-04 AAAGTGGGAA AGATAAGA GTCTAGAGAT chrI:12872610-12872690 36 1.57e-04 TTGGGAAATA TGATAACA GGAAGTCGCG chrX:12478632-12478712 10 1.57e-04 TACACTTGC TGATAACA ATAAAATTAA chrIV:14891073-14891153 52 1.57e-04 TTCTCTAGTT TGATAACA TTTTCTCTGA chrX:7661056-7661136 40 1.78e-04 CGATGGAGAA AGATAAGG ACGACCGATT chrX:4981740-4981820 25 1.78e-04 GTGGAGAAGT AGATAAGG GTATTTCCAT chrI:10671191-10671271 32 2.70e-04 TATGAAAAAT TGATAAAA GTCTGTATGT chrI:12429298-12429378 58 2.70e-04 ATGACAATAC TGATAAAA ATTATGACAG chrIV:12962751-12962831 39 2.70e-04 TCAATTTTGA TGATAACG TGCCAGTTTT chrIV:13609938-13610018 28 2.70e-04 ATAGGTGGAT TGATAACG AAATATGTCT chrX:5834899-5834979 48 2.70e-04 ACAAGAATTA TGATAAAA GATCACAGTG chrX:7975898-7975978 22 2.70e-04 CATTTTCAAC TGATAAAA TAGTTTACAA chrIII:8017212-8017292 48 2.70e-04 ACAAACTGAT TGATAACG CCAAATAGCG chrIII:5965978-5966058 64 2.70e-04 TCACACCAAT TGATAAAA CGAATGGGA chrX:6121456-6121536 28 2.70e-04 CAAACACTTC TGATAAAA ATTGTTTACT chrIV:16176967-16177047 61 2.70e-04 TCCCGTTTGC TGATAAAA AAAATTGTTT chrIII:13388770-13388850 69 3.12e-04 ACAAATTGTT CGATAAGA TAAG chrIV:10796835-10796915 17 3.12e-04 CCATATGAAT CGATAAGA GAGAGACTCT chrIV:9353887-9353967 73 3.12e-04 AAAGTATTGT CGATAAGA chrV:13891658-13891738 24 3.70e-04 CTATGAACTT TGATAAAG AACTCAATCA chrX:12350371-12350451 64 4.20e-04 ACTAGCACAA CGATAAGG TTTCTTTTC chrIII:2294902-2294982 65 4.20e-04 TCTATTTTAT AGATAACA GTTCACGT chrX:16041947-16042027 60 4.20e-04 AACACTATAG AGATAACA GAGAGGAGAA chrX:3814984-3815064 70 4.20e-04 GCAGTTTCCA AGATAACA CGA chrII:6025830-6025910 60 4.58e-04 GAGTACGGTT TGATAAAC TGATGTATTG chrI:9652998-9653078 64 4.58e-04 CACATTTTTG TGATAAAC CCTCCGGGT chrIII:3858118-3858198 47 4.58e-04 TACTCTGCTC TGATAAAC TCATTTTCAT chrI:13184786-13184866 65 4.58e-04 TCGGTTTTGG TGATAAAC TCCGTTTT chrI:3671347-3671427 64 4.58e-04 AACATGGAAA TGATAAAC TTTGCCGAT chrX:9705404-9705484 71 4.58e-04 TAACTATTTG TGATAAAC TG chrX:12229836-12229916 3 5.64e-04 TT AGATAACG GTTTGAACAT chrX:6674483-6674563 65 5.64e-04 TTAAACTTAC AGATAACG ATCATTTT chrV:16610261-16610341 59 5.64e-04 ACTTACAATT AGATAACG GGCTAGTAAA chrIII:10196931-10197011 36 5.64e-04 CTGAAATAAT AGATAAAA TTAATGTTAA chrV:16621047-16621127 17 5.64e-04 ACTCACTATC AGATAAAA TGTGAGTAAA chrIV:319825-319905 14 6.45e-04 attggctgtt agataaag tgtttgaaag chrX:17626752-17626832 19 7.34e-04 CTATCTCTGA CGATAAAA GCTACCGTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATAARA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:17598985-17599065 3.9e-05 11_[+4]_61 chrIII:11822539-11822619 3.9e-05 3_[+4]_69 chrIV:12196741-12196821 3.9e-05 45_[+4]_27 chrI:2962385-2962465 3.9e-05 26_[+4]_46 chrV:16610953-16611033 3.9e-05 24_[+4]_48 chrV:3969840-3969920 3.9e-05 52_[+4]_20 chrIII:5420443-5420523 3.9e-05 61_[+4]_11 chrX:10916363-10916443 3.9e-05 9_[+4]_63 chrIV:6185761-6185841 3.9e-05 60_[+4]_12 chrIII:7031668-7031748 3.9e-05 12_[+4]_60 chrX:7343387-7343467 3.9e-05 32_[+4]_40 chrX:3141822-3141902 3.9e-05 68_[+4]_4 chrV:14324621-14324701 3.9e-05 51_[+4]_21 chrV:13576994-13577074 5.9e-05 51_[+4]_21 chrIII:3980091-3980171 5.9e-05 57_[+4]_15 chrV:20423532-20423612 5.9e-05 68_[+4]_4 chrII:3296795-3296875 7.9e-05 59_[+4]_13 chrII:3295353-3295433 7.9e-05 47_[+4]_25 chrIV:5669611-5669691 7.9e-05 39_[+4]_33 chrV:13532628-13532708 7.9e-05 10_[+4]_62 chrIII:5666989-5667069 0.00012 59_[+4]_13 chrV:9173107-9173187 0.00012 71_[+4]_1 chrI:10227016-10227096 0.00012 44_[+4]_28 chrX:16732766-16732846 0.00012 31_[+4]_41 chrII:6260024-6260104 0.00012 36_[+4]_36 chrX:2262573-2262653 0.00012 28_[+4]_44 chrI:12872610-12872690 0.00016 35_[+4]_37 chrX:12478632-12478712 0.00016 9_[+4]_63 chrIV:14891073-14891153 0.00016 51_[+4]_21 chrX:7661056-7661136 0.00018 39_[+4]_33 chrX:4981740-4981820 0.00018 24_[+4]_48 chrI:10671191-10671271 0.00027 31_[+4]_41 chrI:12429298-12429378 0.00027 57_[+4]_15 chrIV:12962751-12962831 0.00027 38_[+4]_34 chrIV:13609938-13610018 0.00027 27_[+4]_45 chrX:5834899-5834979 0.00027 47_[+4]_25 chrX:7975898-7975978 0.00027 21_[+4]_51 chrIII:8017212-8017292 0.00027 47_[+4]_25 chrIII:5965978-5966058 0.00027 63_[+4]_9 chrX:6121456-6121536 0.00027 27_[+4]_45 chrIV:16176967-16177047 0.00027 60_[+4]_12 chrIII:13388770-13388850 0.00031 68_[+4]_4 chrIV:10796835-10796915 0.00031 16_[+4]_56 chrIV:9353887-9353967 0.00031 72_[+4] chrV:13891658-13891738 0.00037 23_[+4]_49 chrX:12350371-12350451 0.00042 63_[+4]_9 chrIII:2294902-2294982 0.00042 64_[+4]_8 chrX:16041947-16042027 0.00042 59_[+4]_13 chrX:3814984-3815064 0.00042 69_[+4]_3 chrII:6025830-6025910 0.00046 59_[+4]_13 chrI:9652998-9653078 0.00046 63_[+4]_9 chrIII:3858118-3858198 0.00046 46_[+4]_26 chrI:13184786-13184866 0.00046 64_[+4]_8 chrI:3671347-3671427 0.00046 63_[+4]_9 chrX:9705404-9705484 0.00046 70_[+4]_2 chrX:12229836-12229916 0.00056 2_[+4]_70 chrX:6674483-6674563 0.00056 64_[+4]_8 chrV:16610261-16610341 0.00056 58_[+4]_14 chrIII:10196931-10197011 0.00056 35_[+4]_37 chrV:16621047-16621127 0.00056 16_[+4]_56 chrIV:319825-319905 0.00064 13_[+4]_59 chrX:17626752-17626832 0.00073 18_[+4]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATAARA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGATAARA width=8 seqs=62 chrV:17598985-17599065 ( 12) TGATAAGA 1 chrIII:11822539-11822619 ( 4) TGATAAGA 1 chrIV:12196741-12196821 ( 46) TGATAAGA 1 chrI:2962385-2962465 ( 27) TGATAAGA 1 chrV:16610953-16611033 ( 25) TGATAAGA 1 chrV:3969840-3969920 ( 53) TGATAAGA 1 chrIII:5420443-5420523 ( 62) TGATAAGA 1 chrX:10916363-10916443 ( 10) TGATAAGA 1 chrIV:6185761-6185841 ( 61) TGATAAGA 1 chrIII:7031668-7031748 ( 13) TGATAAGA 1 chrX:7343387-7343467 ( 33) TGATAAGA 1 chrX:3141822-3141902 ( 69) TGATAAGA 1 chrV:14324621-14324701 ( 52) TGATAAGA 1 chrV:13576994-13577074 ( 52) TGATAAGG 1 chrIII:3980091-3980171 ( 58) TGATAAGG 1 chrV:20423532-20423612 ( 69) TGATAAGG 1 chrII:3296795-3296875 ( 60) TGATAAGC 1 chrII:3295353-3295433 ( 48) TGATAAGC 1 chrIV:5669611-5669691 ( 40) TGATAAGC 1 chrV:13532628-13532708 ( 11) TGATAAGC 1 chrIII:5666989-5667069 ( 60) AGATAAGA 1 chrV:9173107-9173187 ( 72) AGATAAGA 1 chrI:10227016-10227096 ( 45) AGATAAGA 1 chrX:16732766-16732846 ( 32) AGATAAGA 1 chrII:6260024-6260104 ( 37) AGATAAGA 1 chrX:2262573-2262653 ( 29) AGATAAGA 1 chrI:12872610-12872690 ( 36) TGATAACA 1 chrX:12478632-12478712 ( 10) TGATAACA 1 chrIV:14891073-14891153 ( 52) TGATAACA 1 chrX:7661056-7661136 ( 40) AGATAAGG 1 chrX:4981740-4981820 ( 25) AGATAAGG 1 chrI:10671191-10671271 ( 32) TGATAAAA 1 chrI:12429298-12429378 ( 58) TGATAAAA 1 chrIV:12962751-12962831 ( 39) TGATAACG 1 chrIV:13609938-13610018 ( 28) TGATAACG 1 chrX:5834899-5834979 ( 48) TGATAAAA 1 chrX:7975898-7975978 ( 22) TGATAAAA 1 chrIII:8017212-8017292 ( 48) TGATAACG 1 chrIII:5965978-5966058 ( 64) TGATAAAA 1 chrX:6121456-6121536 ( 28) TGATAAAA 1 chrIV:16176967-16177047 ( 61) TGATAAAA 1 chrIII:13388770-13388850 ( 69) CGATAAGA 1 chrIV:10796835-10796915 ( 17) CGATAAGA 1 chrIV:9353887-9353967 ( 73) CGATAAGA 1 chrV:13891658-13891738 ( 24) TGATAAAG 1 chrX:12350371-12350451 ( 64) CGATAAGG 1 chrIII:2294902-2294982 ( 65) AGATAACA 1 chrX:16041947-16042027 ( 60) AGATAACA 1 chrX:3814984-3815064 ( 70) AGATAACA 1 chrII:6025830-6025910 ( 60) TGATAAAC 1 chrI:9652998-9653078 ( 64) TGATAAAC 1 chrIII:3858118-3858198 ( 47) TGATAAAC 1 chrI:13184786-13184866 ( 65) TGATAAAC 1 chrI:3671347-3671427 ( 64) TGATAAAC 1 chrX:9705404-9705484 ( 71) TGATAAAC 1 chrX:12229836-12229916 ( 3) AGATAACG 1 chrX:6674483-6674563 ( 65) AGATAACG 1 chrV:16610261-16610341 ( 59) AGATAACG 1 chrIII:10196931-10197011 ( 36) AGATAAAA 1 chrV:16621047-16621127 ( 17) AGATAAAA 1 chrIV:319825-319905 ( 14) AGATAAAG 1 chrX:17626752-17626832 ( 19) CGATAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATAARA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.49826 E= 4.2e-007 -28 -109 -1260 101 -1260 -1260 251 -1260 159 -1260 -1260 -1260 -1260 -1260 -1260 164 159 -1260 -1260 -1260 159 -1260 -1260 -1260 -19 17 155 -1260 88 -9 36 -1260 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATAARA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 62 E= 4.2e-007 0.274194 0.080645 0.000000 0.645161 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.290323 0.193548 0.516129 0.000000 0.612903 0.161290 0.225806 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATAARA MEME-4 regular expression -------------------------------------------------------------------------------- [TA]GATAA[GA][AG] -------------------------------------------------------------------------------- Time 16.18 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCTCMCC MEME-5 width = 8 sites = 3 llr = 36 E-value = 1.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCTCMCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::3:: pos.-specific C a:a:a7aa probability G :::::::: matrix T :a:a:::: bits 2.5 * * * ** 2.3 * * * ** 2.0 * * * ** 1.8 * * * ** Relative 1.5 ***** ** Entropy 1.3 ******** (17.3 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CTCTCCCC consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCMCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:6612985-6613065 10 2.65e-06 GCACTTCTG CTCTCCCC ATTTTTTCAT chrX:12350371-12350451 17 2.65e-06 ATCTTGCACA CTCTCCCC ATGTCAACCA chrIII:9288718-9288798 44 7.77e-06 TGcacaatca ctctcacc tcgcaacaca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCMCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:6612985-6613065 2.7e-06 9_[+5]_63 chrX:12350371-12350451 2.7e-06 16_[+5]_56 chrIII:9288718-9288798 7.8e-06 43_[+5]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCMCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCTCMCC width=8 seqs=3 chrV:6612985-6613065 ( 10) CTCTCCCC 1 chrX:12350371-12350451 ( 17) CTCTCCCC 1 chrIII:9288718-9288798 ( 44) CTCTCACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCMCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.0179 E= 1.9e+004 -823 254 -823 -823 -823 -823 -823 164 -823 254 -823 -823 -823 -823 -823 164 -823 254 -823 -823 1 195 -823 -823 -823 254 -823 -823 -823 254 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCMCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.9e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCMCC MEME-5 regular expression -------------------------------------------------------------------------------- CTCTC[CA]CC -------------------------------------------------------------------------------- Time 19.40 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:10245795-10245875 6.47e-02 33_[+1(3.37e-05)]_39 chrIV:4976155-4976235 8.12e-04 39_[+3(1.88e-05)]_33 chrX:2966418-2966498 4.28e-02 80 chrIV:16176967-16177047 5.34e-03 10_[+1(3.37e-05)]_62 chrV:13532628-13532708 1.95e-02 10_[+4(7.89e-05)]_62 chrX:17637704-17637784 3.60e-02 80 chrX:3831031-3831111 1.46e-02 80 chrII:6344672-6344752 6.28e-02 80 chrIII:531063-531143 4.08e-02 80 chrX:12226143-12226223 2.09e-03 65_[+1(8.89e-05)]_7 chrII:7778426-7778506 1.79e-01 37_[+2(5.93e-05)]_35 chrIV:8526738-8526818 4.97e-01 80 chrIII:4373053-4373133 1.35e-01 80 chrX:12219645-12219725 1.22e-02 10_[+3(1.88e-05)]_62 chrX:6121456-6121536 1.56e-03 36_[+1(3.37e-05)]_36 chrX:5509277-5509357 9.38e-03 80 chrX:9705404-9705484 1.30e-03 16_[+1(3.37e-05)]_56 chrIII:5965978-5966058 6.19e-03 41_[+2(9.00e-05)]_31 chrIII:8017212-8017292 1.14e-01 80 chrX:2590175-2590255 1.30e-01 80 chrX:15771600-15771680 8.69e-02 80 chrV:17897076-17897156 5.75e-03 55_[+3(3.80e-05)]_17 chrX:6819770-6819850 1.62e-01 35_[+1(8.89e-05)]_37 chrV:9197295-9197375 4.71e-02 48_[+2(9.00e-05)]_24 chrX:17206035-17206115 1.83e-01 80 chrX:3285088-3285168 6.09e-01 80 chrX:312405-312485 7.17e-03 80 chrX:313049-313129 5.13e-02 37_[+3(3.80e-05)]_35 chrX:6884608-6884688 1.35e-01 80 chrV:14165904-14165984 3.27e-02 8_[+3(7.35e-05)]_64 chrIV:5583348-5583428 2.06e-02 23_[+2(5.93e-05)]_49 chrIII:13020900-13020980 7.51e-02 44_[+2(5.93e-05)]_28 chrIV:9353887-9353967 2.29e-02 80 chrI:7562313-7562393 4.09e-02 80 chrV:15715768-15715848 2.52e-01 80 chrI:3671347-3671427 4.03e-03 37_[+1(7.04e-05)]_35 chrIV:2080499-2080579 1.03e-02 62_[+4(7.89e-05)]_10 chrX:2031029-2031109 5.03e-02 9_[+1(3.37e-05)]_63 chrX:10976956-10977036 3.52e-02 62_[+2(9.00e-05)]_10 chrII:15170063-15170143 1.29e-01 30_[+2(9.00e-05)]_42 chrX:2214122-2214202 3.25e-01 80 chrIII:6895850-6895930 9.78e-03 7_[+2(5.93e-05)]_65 chrIV:7734332-7734412 8.75e-03 80 chrV:15402015-15402095 2.24e-01 80 chrIII:3975195-3975275 8.25e-02 12_[+1(3.37e-05)]_60 chrV:14324621-14324701 1.05e-02 51_[+4(3.85e-05)]_21 chrIV:17175139-17175219 1.26e-02 80 chrX:7975898-7975978 4.26e-03 40_[+1(7.04e-05)]_32 chrII:7420314-7420394 1.44e-01 80 chrII:4599997-4600077 5.08e-02 48_[+1(8.89e-05)]_24 chrIII:9582415-9582495 1.22e-01 55_[+2(5.93e-05)]_17 chrV:17891516-17891596 4.07e-02 80 chrII:10373221-10373301 1.16e-01 80 chrIV:14891073-14891153 9.26e-03 28_[+2(9.00e-05)]_44 chrII:8738403-8738483 3.45e-02 35_[+2(5.93e-05)]_37 chrX:551471-551551 3.37e-02 80 chrIII:9288718-9288798 2.06e-04 6_[+1(3.37e-05)]_29_[+5(7.77e-06)]_\ 29 chrX:3141822-3141902 4.95e-03 6_[+2(5.93e-05)]_54_[+4(3.85e-05)]_\ 4 chrX:16016980-16017060 8.67e-02 80 chrX:9985175-9985255 2.94e-01 80 chrIV:11438385-11438465 4.82e-01 80 chrX:7998094-7998174 9.17e-01 80 chrV:16621047-16621127 1.05e-02 29_[+2(5.93e-05)]_43 chrV:1027203-1027283 5.00e-01 80 chrV:10191401-10191481 2.17e-02 80 chrX:5374892-5374972 7.75e-03 41_[+3(1.88e-05)]_31 chrX:1094483-1094563 5.27e-01 80 chrX:13284250-13284330 7.41e-02 49_[+1(7.04e-05)]_23 chrX:3814984-3815064 1.11e-01 80 chrX:17626752-17626832 1.46e-01 80 chrV:2656331-2656411 1.36e-02 6_[+1(7.04e-05)]_66 chrV:3580599-3580679 2.63e-04 2_[+3(3.80e-05)]_41_[+2(9.00e-05)]_\ 21 chrX:7828130-7828210 8.61e-02 48_[+2(5.93e-05)]_24 chrII:10028383-10028463 1.93e-01 80 chrII:11155131-11155211 1.86e-02 80 chrI:13184786-13184866 1.94e-02 40_[+1(3.37e-05)]_32 chrX:12478632-12478712 5.35e-02 80 chrV:15479245-15479325 4.52e-03 24_[+3(1.88e-05)]_48 chrIV:7094551-7094631 3.08e-02 80 chrX:7343387-7343467 5.70e-03 32_[+4(3.85e-05)]_40 chrV:15015243-15015323 1.26e-04 16_[+1(3.37e-05)]_12_[+3(1.88e-05)]_\ 36 chrIII:7031668-7031748 1.43e-03 12_[+4(3.85e-05)]_60 chrV:3482775-3482855 1.65e-03 5_[+3(1.88e-05)]_67 chrX:10631972-10632052 1.91e-02 80 chrX:3785237-3785317 1.78e-03 47_[+2(5.93e-05)]_7_[+3(7.35e-05)]_\ 10 chrV:15316311-15316391 7.48e-02 53_[+3(7.35e-05)]_19 chrIV:1620065-1620145 3.95e-01 80 chrX:9105225-9105305 2.32e-01 80 chrX:12222912-12222992 1.22e-01 80 chrII:13763172-13763252 1.37e-03 12_[+3(3.80e-05)]_60 chrI:8240953-8241033 3.81e-01 80 chrX:2021746-2021826 2.94e-01 80 chrIV:6185761-6185841 5.25e-03 60_[+4(3.85e-05)]_12 chrX:5834899-5834979 7.90e-02 80 chrI:12872610-12872690 4.05e-02 80 chrIV:13609938-13610018 2.54e-02 80 chrV:11863057-11863137 6.27e-03 69_[+2(5.93e-05)]_3 chrX:10916363-10916443 1.37e-03 9_[+4(3.85e-05)]_63 chrIV:5669611-5669691 2.47e-03 39_[+4(7.89e-05)]_10_[+2(5.93e-05)]_\ 15 chrIII:10196931-10197011 8.28e-02 80 chrX:2369214-2369294 4.09e-02 14_[+3(3.80e-05)]_58 chrX:10030979-10031059 6.66e-02 41_[+1(7.04e-05)]_31 chrV:6616469-6616549 3.67e-01 80 chrV:7096515-7096595 8.66e-01 80 chrX:8423341-8423421 1.28e-01 35_[+3(3.80e-05)]_37 chrV:3581199-3581279 1.41e-01 80 chrV:19377145-19377225 3.88e-03 72_[+3(3.80e-05)] chrI:9604530-9604610 2.17e-01 80 chrIV:12962751-12962831 1.54e-03 12_[+3(7.35e-05)]_60 chrIII:1342641-1342721 2.30e-03 43_[+2(5.93e-05)]_29 chrX:5086365-5086445 3.52e-02 35_[+1(3.37e-05)]_37 chrV:20423532-20423612 5.40e-03 52_[+2(5.93e-05)]_8_[+4(5.90e-05)]_\ 4 chrII:6521501-6521581 5.41e-01 80 chrX:4579030-4579110 4.25e-01 80 chrIV:7520433-7520513 2.11e-01 80 chrV:16610261-16610341 5.15e-02 71_[+2(5.93e-05)]_1 chrX:16041947-16042027 6.55e-02 80 chrX:2262573-2262653 2.98e-01 80 chrI:10061199-10061279 7.19e-01 80 chrX:10981552-10981632 5.05e-03 61_[+3(1.88e-05)]_11 chrX:4981740-4981820 2.15e-04 45_[+3(7.35e-05)]_27 chrIII:5420443-5420523 2.52e-02 61_[+4(3.85e-05)]_11 chrII:10490490-10490570 5.62e-04 70_[+3(1.88e-05)]_2 chrI:1916070-1916150 1.83e-01 34_[+1(7.04e-05)]_38 chrX:6674483-6674563 1.92e-01 80 chrI:6592016-6592096 4.38e-01 80 chrX:9676923-9677003 1.65e-02 47_[+3(1.88e-05)]_25 chrX:1371836-1371916 9.88e-04 [+2(5.93e-05)]_26_[+3(1.88e-05)]_1_\ [+3(1.88e-05)]_29 chrX:2813158-2813238 7.99e-02 80 chrII:3990863-3990943 7.91e-02 80 chrII:3295353-3295433 1.66e-02 47_[+4(7.89e-05)]_25 chrV:7548183-7548263 2.80e-03 80 chrI:13815955-13816035 4.70e-02 80 chrX:17510627-17510707 7.20e-02 30_[+1(7.04e-05)]_42 chrV:16080868-16080948 1.92e-02 27_[+2(9.00e-05)]_45 chrV:3969840-3969920 2.16e-03 52_[+4(3.85e-05)]_20 chrX:7332889-7332969 1.99e-01 80 chrX:11992426-11992506 6.69e-02 45_[+2(5.93e-05)]_27 chrV:8767660-8767740 1.37e-01 80 chrX:3816297-3816377 3.32e-01 80 chrIII:10629961-10630041 1.25e-02 45_[+2(9.00e-05)]_27 chrII:5893519-5893599 5.37e-03 71_[+2(5.93e-05)]_1 chrI:5421820-5421900 1.42e-01 28_[+2(5.93e-05)]_44 chrI:4539975-4540055 1.96e-02 40_[+3(7.35e-05)]_32 chrII:5561519-5561599 6.61e-03 80 chrV:16610953-16611033 1.02e-03 24_[+4(3.85e-05)]_28_[+1(3.37e-05)]_\ 12 chrIV:13024080-13024160 1.97e-02 50_[+3(1.88e-05)]_22 chrV:5666206-5666286 5.15e-01 80 chrI:12429298-12429378 1.41e-01 80 chrX:10951188-10951268 5.65e-02 80 chrII:7139210-7139290 1.52e-02 69_[+3(7.35e-05)]_3 chrI:7307189-7307269 1.03e-01 80 chrX:7661056-7661136 1.40e-01 80 chrX:15050164-15050244 1.93e-01 80 chrIII:3858118-3858198 1.46e-02 80 chrX:4621307-4621387 3.08e-02 80 chrX:6667576-6667656 3.12e-01 33_[+2(9.00e-05)]_39 chrII:14357641-14357721 2.58e-01 80 chrIV:6210718-6210798 1.96e-01 80 chrX:439150-439230 4.73e-02 80 chrIV:49932-50012 2.46e-02 80 chrX:6257113-6257193 3.65e-01 80 chrIII:9689568-9689648 8.51e-01 80 chrII:8948150-8948230 1.33e-01 80 chrII:3296795-3296875 4.96e-05 16_[+1(3.37e-05)]_35_[+4(7.89e-05)]_\ 13 chrX:11261908-11261988 1.23e-02 80 chrX:8447674-8447754 2.50e-03 57_[+1(3.37e-05)]_15 chrI:2962385-2962465 6.77e-04 26_[+4(3.85e-05)]_46 chrII:8074270-8074350 4.51e-03 80 chrIV:10796835-10796915 1.19e-01 80 chrX:17702783-17702863 7.28e-02 80 chrX:16672864-16672944 6.26e-03 [+1(7.04e-05)]_72 chrIII:6088111-6088191 8.03e-04 25_[+3(1.88e-05)]_47 chrV:17723353-17723433 3.73e-02 80 chrV:10546906-10546986 5.72e-01 80 chrIII:9237844-9237924 4.56e-01 80 chrII:2420799-2420879 2.86e-03 34_[+1(7.04e-05)]_38 chrI:154082-154162 1.06e-01 80 chrIII:3980091-3980171 1.66e-01 57_[+4(5.90e-05)]_15 chrII:11156309-11156389 1.93e-01 80 chrIII:2294902-2294982 5.02e-02 80 chrII:5911438-5911518 8.62e-02 41_[+1(7.04e-05)]_31 chrIV:9343345-9343425 1.78e-01 68_[+2(5.93e-05)]_4 chrX:13088679-13088759 2.15e-01 80 chrIV:319825-319905 2.66e-01 80 chrX:9550697-9550777 4.85e-01 80 chrII:6260024-6260104 1.07e-02 80 chrIII:5222916-5222996 1.78e-01 80 chrX:8758124-8758204 1.12e-01 80 chrIV:12196741-12196821 4.59e-04 19_[+1(3.37e-05)]_18_[+4(3.85e-05)]_\ 27 chrI:10671191-10671271 6.47e-03 80 chrIII:3546973-3547053 2.04e-01 80 chrII:1297820-1297900 8.29e-03 11_[+3(1.88e-05)]_61 chrV:12944595-12944675 2.12e-01 53_[+1(8.89e-05)]_19 chrX:7808521-7808601 1.71e-01 80 chrV:4964835-4964915 2.94e-02 80 chrX:12241602-12241682 6.03e-02 80 chrII:7948425-7948505 2.24e-01 80 chrIII:5221997-5222077 1.26e-01 14_[+2(5.93e-05)]_58 chrI:8009798-8009878 2.97e-05 45_[+5(9.05e-05)]_18_[+3(1.88e-05)]_\ 1 chrIII:11822539-11822619 1.05e-01 3_[+4(3.85e-05)]_69 chrX:1125614-1125694 2.16e-02 80 chrIII:13388770-13388850 4.97e-04 80 chrX:16732766-16732846 4.51e-02 80 chrI:5207722-5207802 3.50e-03 69_[+1(3.37e-05)]_3 chrIV:6553705-6553785 1.37e-01 80 chrX:2320697-2320777 1.39e-01 26_[+3(3.80e-05)]_46 chrX:4523491-4523571 6.64e-01 80 chrV:18957563-18957643 1.26e-01 80 chrII:6025099-6025179 2.29e-01 80 chrIV:15849785-15849865 1.34e-01 80 chrV:13576994-13577074 3.43e-04 6_[+1(8.89e-05)]_37_[+4(5.90e-05)]_\ 21 chrX:9208701-9208781 2.49e-01 80 chrV:13733866-13733946 2.84e-01 80 chrI:10561602-10561682 6.82e-03 80 chrV:17297530-17297610 9.81e-03 7_[+1(7.04e-05)]_65 chrV:17598985-17599065 1.35e-02 11_[+4(3.85e-05)]_61 chrII:5805467-5805547 1.06e-01 80 chrIII:1676738-1676818 4.97e-02 80 chrX:4248567-4248647 5.41e-01 80 chrI:10227016-10227096 2.79e-02 80 chrV:18371738-18371818 1.57e-03 50_[+2(5.93e-05)]_22 chrV:9173107-9173187 5.85e-02 80 chrIII:5666989-5667069 2.34e-02 80 chrII:9937040-9937120 4.18e-02 20_[+3(7.35e-05)]_52 chrV:6575855-6575935 2.68e-02 80 chrV:12798154-12798234 2.99e-01 80 chrX:12229836-12229916 1.34e-01 80 chrX:8014794-8014874 5.00e-01 80 chrX:4284152-4284232 7.74e-02 80 chrX:12596080-12596160 2.81e-02 34_[+3(7.35e-05)]_38 chrI:1919313-1919393 4.11e-01 80 chrII:12892537-12892617 2.44e-02 80 chrIII:6989366-6989446 1.47e-01 80 chrX:17092579-17092659 9.40e-04 58_[+1(3.37e-05)]_14 chrX:3551363-3551443 1.17e-01 80 chrX:3387479-3387559 3.96e-01 80 chrI:9652998-9653078 6.47e-03 33_[+1(3.37e-05)]_39 chrIII:6346152-6346232 3.28e-02 37_[+2(5.93e-05)]_35 chrX:5109282-5109362 3.80e-01 80 chrI:10382029-10382109 1.25e-02 25_[+4(3.85e-05)]_47 chrII:13495855-13495935 7.17e-04 51_[+3(1.88e-05)]_21 chrII:2834327-2834407 9.27e-02 80 chrV:13891658-13891738 2.73e-04 80 chrII:10232011-10232091 1.00e-01 80 chrII:6526284-6526364 1.80e-01 80 chrII:6025830-6025910 4.90e-01 80 chrX:12350371-12350451 4.97e-05 16_[+5(2.65e-06)]_56 chrV:6612985-6613065 5.46e-04 9_[+5(2.65e-06)]_35_[+2(5.93e-05)]_\ 20 chrX:17386305-17386385 1.54e-02 33_[+1(7.04e-05)]_39 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c23n06.farnam.hpc.yale.internal ********************************************************************************