******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/crh-2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:7129590-7129670 1.0000 80 chrII:6870931-6871011 1.0000 80 chrI:8529546-8529626 1.0000 80 chrI:10760338-10760418 1.0000 80 chrIII:12009871-12009951 1.0000 80 chrX:12146072-12146152 1.0000 80 chrIV:10059372-10059452 1.0000 80 chrI:14051925-14052005 1.0000 80 chrIII:11087588-11087668 1.0000 80 chrIII:6248262-6248342 1.0000 80 chrI:14928109-14928189 1.0000 80 chrIV:5939297-5939377 1.0000 80 chrI:7348680-7348760 1.0000 80 chrX:13746837-13746917 1.0000 80 chrV:6796432-6796512 1.0000 80 chrIV:14431026-14431106 1.0000 80 chrIII:10379769-10379849 1.0000 80 chrI:10036050-10036130 1.0000 80 chrI:4671897-4671977 1.0000 80 chrIII:9786902-9786982 1.0000 80 chrV:8221248-8221328 1.0000 80 chrII:7352693-7352773 1.0000 80 chrV:13012037-13012117 1.0000 80 chrX:4247386-4247466 1.0000 80 chrII:5936162-5936242 1.0000 80 chrII:7714824-7714904 1.0000 80 chrI:1914013-1914093 1.0000 80 chrIII:6395848-6395928 1.0000 80 chrX:3829830-3829910 1.0000 80 chrIV:94172-94252 1.0000 80 chrIII:1002720-1002800 1.0000 80 chrII:12051780-12051860 1.0000 80 chrI:8858711-8858791 1.0000 80 chrII:12931602-12931682 1.0000 80 chrI:6171619-6171699 1.0000 80 chrIII:651746-651826 1.0000 80 chrX:4142797-4142877 1.0000 80 chrIII:3875052-3875132 1.0000 80 chrV:10046477-10046557 1.0000 80 chrIII:5421473-5421553 1.0000 80 chrIII:6402465-6402545 1.0000 80 chrX:2544790-2544870 1.0000 80 chrV:5560041-5560121 1.0000 80 chrI:5550569-5550649 1.0000 80 chrI:96485-96565 1.0000 80 chrX:3235579-3235659 1.0000 80 chrII:9291760-9291840 1.0000 80 chrIV:6652742-6652822 1.0000 80 chrI:6001211-6001291 1.0000 80 chrIV:7094471-7094551 1.0000 80 chrIII:12325394-12325474 1.0000 80 chrIV:15929966-15930046 1.0000 80 chrII:14489588-14489668 1.0000 80 chrIV:8030242-8030322 1.0000 80 chrIV:3167036-3167116 1.0000 80 chrII:7864354-7864434 1.0000 80 chrIII:13351154-13351234 1.0000 80 chrIII:3781997-3782077 1.0000 80 chrII:13190577-13190657 1.0000 80 chrIII:13734009-13734089 1.0000 80 chrIII:1223800-1223880 1.0000 80 chrII:10300514-10300594 1.0000 80 chrIV:8113317-8113397 1.0000 80 chrIV:7325807-7325887 1.0000 80 chrI:5828900-5828980 1.0000 80 chrII:4925498-4925578 1.0000 80 chrII:5429850-5429930 1.0000 80 chrI:13064043-13064123 1.0000 80 chrI:3710797-3710877 1.0000 80 chrI:12986999-12987079 1.0000 80 chrX:5135643-5135723 1.0000 80 chrIV:9872890-9872970 1.0000 80 chrI:6731848-6731928 1.0000 80 chrX:3611374-3611454 1.0000 80 chrV:19524811-19524891 1.0000 80 chrV:8769338-8769418 1.0000 80 chrV:6411340-6411420 1.0000 80 chrIV:13327203-13327283 1.0000 80 chrIII:8696812-8696892 1.0000 80 chrI:663601-663681 1.0000 80 chrI:14657211-14657291 1.0000 80 chrX:17600313-17600393 1.0000 80 chrX:11036842-11036922 1.0000 80 chrX:3256960-3257040 1.0000 80 chrIV:10243396-10243476 1.0000 80 chrIII:3437365-3437445 1.0000 80 chrX:11047394-11047474 1.0000 80 chrI:1296611-1296691 1.0000 80 chrII:5932490-5932570 1.0000 80 chrIII:8656184-8656264 1.0000 80 chrV:12554384-12554464 1.0000 80 chrIII:10719141-10719221 1.0000 80 chrX:11723865-11723945 1.0000 80 chrIV:383450-383530 1.0000 80 chrI:9488288-9488368 1.0000 80 chrIV:17171931-17172011 1.0000 80 chrX:5780874-5780954 1.0000 80 chrII:3246037-3246117 1.0000 80 chrII:9624253-9624333 1.0000 80 chrII:5338425-5338505 1.0000 80 chrIII:10802164-10802244 1.0000 80 chrV:13377288-13377368 1.0000 80 chrI:14936599-14936679 1.0000 80 chrIII:13101220-13101300 1.0000 80 chrIV:7841354-7841434 1.0000 80 chrI:8011535-8011615 1.0000 80 chrII:7325353-7325433 1.0000 80 chrIV:8481489-8481569 1.0000 80 chrII:4747915-4747995 1.0000 80 chrIII:11774658-11774738 1.0000 80 chrV:18868620-18868700 1.0000 80 chrII:6878093-6878173 1.0000 80 chrV:13212724-13212804 1.0000 80 chrX:1148595-1148675 1.0000 80 chrV:9584613-9584693 1.0000 80 chrI:881626-881706 1.0000 80 chrI:12572475-12572555 1.0000 80 chrIV:9674098-9674178 1.0000 80 chrIII:9326658-9326738 1.0000 80 chrIII:647375-647455 1.0000 80 chrX:15779693-15779773 1.0000 80 chrIII:13426238-13426318 1.0000 80 chrI:4158248-4158328 1.0000 80 chrIV:8987008-8987088 1.0000 80 chrI:7354335-7354415 1.0000 80 chrX:8820796-8820876 1.0000 80 chrV:12741847-12741927 1.0000 80 chrII:10861898-10861978 1.0000 80 chrV:19053486-19053566 1.0000 80 chrV:8603403-8603483 1.0000 80 chrI:5287369-5287449 1.0000 80 chrII:6026804-6026884 1.0000 80 chrIII:2948822-2948902 1.0000 80 chrIV:13314311-13314391 1.0000 80 chrX:11519276-11519356 1.0000 80 chrX:5468011-5468091 1.0000 80 chrIV:5586597-5586677 1.0000 80 chrV:10802240-10802320 1.0000 80 chrIII:6625431-6625511 1.0000 80 chrV:10867741-10867821 1.0000 80 chrX:4245218-4245298 1.0000 80 chrI:12194265-12194345 1.0000 80 chrIV:11788793-11788873 1.0000 80 chrV:10468396-10468476 1.0000 80 chrIII:7315305-7315385 1.0000 80 chrI:7081636-7081716 1.0000 80 chrI:7548168-7548248 1.0000 80 chrIII:7952250-7952330 1.0000 80 chrIV:9651487-9651567 1.0000 80 chrI:6727807-6727887 1.0000 80 chrV:4720117-4720197 1.0000 80 chrI:5408485-5408565 1.0000 80 chrIII:13606259-13606339 1.0000 80 chrIII:13608024-13608104 1.0000 80 chrIV:10347676-10347756 1.0000 80 chrIV:282121-282201 1.0000 80 chrX:11340600-11340680 1.0000 80 chrX:7233897-7233977 1.0000 80 chrIV:12849183-12849263 1.0000 80 chrIII:600764-600844 1.0000 80 chrX:11710434-11710514 1.0000 80 chrX:3534353-3534433 1.0000 80 chrX:5467461-5467541 1.0000 80 chrII:8383009-8383089 1.0000 80 chrV:13879409-13879489 1.0000 80 chrV:10699312-10699392 1.0000 80 chrX:8932545-8932625 1.0000 80 chrX:6517589-6517669 1.0000 80 chrIV:14793977-14794057 1.0000 80 chrIII:3117159-3117239 1.0000 80 chrII:5962752-5962832 1.0000 80 chrII:12028046-12028126 1.0000 80 chrX:10477730-10477810 1.0000 80 chrX:1337205-1337285 1.0000 80 chrIV:8032291-8032371 1.0000 80 chrV:14830482-14830562 1.0000 80 chrIII:9059164-9059244 1.0000 80 chrIII:9507938-9508018 1.0000 80 chrII:9656391-9656471 1.0000 80 chrII:5281279-5281359 1.0000 80 chrV:20164754-20164834 1.0000 80 chrX:9540608-9540688 1.0000 80 chrX:11515572-11515652 1.0000 80 chrIV:8026509-8026589 1.0000 80 chrV:12952442-12952522 1.0000 80 chrIV:9333202-9333282 1.0000 80 chrX:13360048-13360128 1.0000 80 chrIII:5137271-5137351 1.0000 80 chrII:7892411-7892491 1.0000 80 chrIII:5201400-5201480 1.0000 80 chrIV:9647921-9648001 1.0000 80 chrX:13226884-13226964 1.0000 80 chrX:530144-530224 1.0000 80 chrIV:6910245-6910325 1.0000 80 chrV:8302679-8302759 1.0000 80 chrII:13664580-13664660 1.0000 80 chrV:14369535-14369615 1.0000 80 chrV:10203774-10203854 1.0000 80 chrX:4503446-4503526 1.0000 80 chrI:3514402-3514482 1.0000 80 chrIV:4022529-4022609 1.0000 80 chrIV:5834386-5834466 1.0000 80 chrX:13310904-13310984 1.0000 80 chrX:2971127-2971207 1.0000 80 chrX:600822-600902 1.0000 80 chrIV:10332032-10332112 1.0000 80 chrIII:6180435-6180515 1.0000 80 chrV:20383242-20383322 1.0000 80 chrIV:1454333-1454413 1.0000 80 chrI:2901037-2901117 1.0000 80 chrV:8267402-8267482 1.0000 80 chrX:17216357-17216437 1.0000 80 chrIII:344168-344248 1.0000 80 chrII:8484714-8484794 1.0000 80 chrX:4244643-4244723 1.0000 80 chrI:9401887-9401967 1.0000 80 chrII:8811180-8811260 1.0000 80 chrIV:8542337-8542417 1.0000 80 chrIII:8748796-8748876 1.0000 80 chrV:10801261-10801341 1.0000 80 chrIII:8654709-8654789 1.0000 80 chrII:3786705-3786785 1.0000 80 chrV:462404-462484 1.0000 80 chrII:7264794-7264874 1.0000 80 chrI:12826724-12826804 1.0000 80 chrV:20417035-20417115 1.0000 80 chrX:7576090-7576170 1.0000 80 chrV:19203500-19203580 1.0000 80 chrV:5687739-5687819 1.0000 80 chrX:16487408-16487488 1.0000 80 chrII:3071524-3071604 1.0000 80 chrIII:7644411-7644491 1.0000 80 chrV:19897745-19897825 1.0000 80 chrI:3680060-3680140 1.0000 80 chrIV:9010483-9010563 1.0000 80 chrII:13665387-13665467 1.0000 80 chrX:8422193-8422273 1.0000 80 chrIV:8028489-8028569 1.0000 80 chrV:6492702-6492782 1.0000 80 chrIV:5764516-5764596 1.0000 80 chrX:1122357-1122437 1.0000 80 chrI:5384228-5384308 1.0000 80 chrIV:5659639-5659719 1.0000 80 chrX:4009089-4009169 1.0000 80 chrX:2580709-2580789 1.0000 80 chrX:2370820-2370900 1.0000 80 chrX:15355764-15355844 1.0000 80 chrI:7762562-7762642 1.0000 80 chrX:9212830-9212910 1.0000 80 chrX:8796791-8796871 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_crh-2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/crh-2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.292 C 0.207 G 0.206 T 0.294 Background letter frequencies (from file dataset with add-one prior applied): A 0.292 C 0.207 G 0.206 T 0.294 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CACGTGGC MEME-1 width = 8 sites = 148 llr = 1089 E-value = 1.7e-101 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACGTGGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1a::::21 pos.-specific C 6:a::3:6 probability G 2::a:66: matrix T 1:::a122 bits 2.3 * 2.1 ** 1.8 *** 1.6 **** Relative 1.4 **** Entropy 1.1 **** (10.6 bits) 0.9 ***** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CACGTGGC consensus G CT sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGTGGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:8028489-8028569 72 6.66e-06 TCAAAGTTTC CACGTGGC A chrIII:7644411-7644491 45 6.66e-06 AAAGAGACAG CACGTGGC GCAAGAAGAT chrII:3071524-3071604 40 6.66e-06 CTGGTGGTGC CACGTGGC GGGGAACGGC chrIII:344168-344248 29 6.66e-06 TTTGGCTTGC CACGTGGC AAATATCGAT chrX:4503446-4503526 50 6.66e-06 TTGATCTTTC CACGTGGC AGTAAATAAC chrIV:14793977-14794057 29 6.66e-06 CATAGAATGA CACGTGGC AACGACGAAC chrX:5467461-5467541 23 6.66e-06 GATAAATGAA CACGTGGC GCGAGATGAT chrI:7548168-7548248 55 6.66e-06 ACCAAGGTGA CACGTGGC AGAGCCATTC chrI:12572475-12572555 14 6.66e-06 TAAAAACTTC CACGTGGC TTACGCGACG chrX:5780874-5780954 28 6.66e-06 CAAAATGGAA CACGTGGC ATGTGCACTT chrIII:10719141-10719221 46 6.66e-06 TACGATCAAA CACGTGGC AAACAGACTA chrV:19524811-19524891 16 6.66e-06 ATTTTTGAGC CACGTGGC TGGGCGGAGT chrI:12986999-12987079 29 6.66e-06 TATTTAATGC CACGTGGC ATTACTTCAA chrIV:8113317-8113397 61 6.66e-06 CGTACGCCTA CACGTGGC TAAATCTATT chrIII:3781997-3782077 63 6.66e-06 AATAATGTGA CACGTGGC AGAGGGTAAT chrI:96485-96565 32 6.66e-06 GTTTTTGTGC CACGTGGC GGCGGCCGAA chrIII:3875052-3875132 55 6.66e-06 AGTTTCCCGC CACGTGGC ATAATCATTT chrIV:94172-94252 29 6.66e-06 CACATTTTGC CACGTGGC AATTGTCGTA chrIII:6395848-6395928 44 6.66e-06 GATCGGGAGC CACGTGGC AGAGATGGAA chrIV:10059372-10059452 58 6.66e-06 CGAATCAATA CACGTGGC AATGATAACA chrI:8529546-8529626 7 6.66e-06 AGAGTA CACGTGGC AAAAATCGAA chrV:12952442-12952522 23 1.33e-05 GTACAGATTC CACGTCGC GCTGGCCGAG chrV:19897745-19897825 45 2.00e-05 CACAACAGGT GACGTGGC AAAATTTGAG chrIV:5834386-5834466 28 2.00e-05 GGTGCGATTT GACGTGGC ATCTCTTTTC chrV:10699312-10699392 25 2.00e-05 CTGTCAAAAT GACGTGGC AAAAAAAGGT chrIII:10802164-10802244 25 2.00e-05 TGAGTTTTGT GACGTGGC AGGCGTGTGT chrV:12554384-12554464 34 2.00e-05 AGTTATCGTT GACGTGGC ATTGGTCAGT chrIII:8656184-8656264 38 2.00e-05 GGTGCATAAT GACGTGGC AACCGTACTC chrI:13064043-13064123 51 2.00e-05 ACCTTTCGGT GACGTGGC AGAACTGCCA chrIII:13351154-13351234 33 2.00e-05 TGAGAAAAAT GACGTGGC GCTGTATCCG chrIV:6652742-6652822 72 2.00e-05 TATCATCCGT GACGTGGC A chrIII:5421473-5421553 28 2.00e-05 AGAGGCTGAT GACGTGGC AAAGAGTGTT chrV:10046477-10046557 10 2.00e-05 TTATTTGAT GACGTGGC AAAATTGTCC chrI:8858711-8858791 11 2.00e-05 GCCCGCCTGT GACGTGGC AACCGGATAC chrII:7714824-7714904 35 2.00e-05 AAACAAGAAT GACGTGGC AAAAGGGATG chrI:4671897-4671977 43 2.00e-05 AGAAGGTGCT GACGTGGC ACATATTTTT chrIII:10379769-10379849 21 2.00e-05 TTATTTTTGA GACGTGGC AAGAGCATAC chrV:6796432-6796512 37 2.00e-05 ATTTATGTGT GACGTGGC AGTTAGATTG chrIV:5939297-5939377 40 2.00e-05 AAAGGAGAGT GACGTGGC AAAAGAGAAT chrI:14928109-14928189 29 2.00e-05 AGACGGTGAT GACGTGGC AAAGCCGTCT chrX:12146072-12146152 68 2.00e-05 TGATGATGAT GACGTGGC AATAC chrI:10760338-10760418 23 2.00e-05 ACTATTTGAT GACGTGGC AAAAATGCAC chrII:6870931-6871011 30 2.00e-05 GAAATCCAAT GACGTGGC AATTGGAACA chrI:7129590-7129670 40 2.00e-05 GTGTTTGTGT GACGTGGC AATTCATCAT chrII:7264794-7264874 26 3.89e-05 TAACTTTCAC CACGTGTC GATGATTTTC chrIV:1454333-1454413 30 3.89e-05 TGTAGTCAGC CACGTGTC ATTCACGTGT chrV:10867741-10867821 73 3.89e-05 ACGTGGAAAT CACGTGAC chrI:5828900-5828980 18 3.89e-05 AGAACCATGC CACGTGTC ATTTCTTATC chrII:10300514-10300594 28 3.89e-05 TGACAAATTA CACGTGAC GTCAGCCACG chrIV:15929966-15930046 15 3.89e-05 ATTTTCCCGC CACGTGTC AATTCGGTCG chrV:19203500-19203580 62 4.84e-05 TGTGAAGCGA CACGTGGT GGGTGTGATG chrII:13190577-13190657 71 4.84e-05 GAAAGAATTC cacgtggt gt chrII:10861898-10861978 41 5.77e-05 AAGTGGCTAC CACGTGGA AGTGGGCACA chrIV:8542337-8542417 11 9.29e-05 TTCTGTTTGC CACGTCAC TTCGTACAGA chrV:20383242-20383322 43 9.29e-05 TCGTGTCTGC CACGtctc tctcatttcc chrII:9656391-9656471 29 9.29e-05 AACAAGTCAC CACGTTGC TTTACTTCTC chrI:881626-881706 71 9.29e-05 ATTTCTTTGC CACGTCAC AC chrV:9584613-9584693 50 9.29e-05 CTTGAAGTGC CACGTCAC AAGAGGAATG chrIII:11774658-11774738 6 9.29e-05 AACGA CACGTCAC GTGCACCGTT chrII:5338425-5338505 17 9.29e-05 AACAAGTGCA CACGTCAC CATAGTTTCA chrV:8769338-8769418 52 9.29e-05 TCGAAAGAGC CACGTTGC ATATGCAACA chrII:7864354-7864434 45 9.29e-05 TGTGCAATCT CACGTCAC GGTGTTTGCG chrIII:6402465-6402545 7 9.29e-05 CTTTGC CACGTCAC ACAAGATCTT chrX:4142797-4142877 36 9.29e-05 TGCATCATGC CACGTCAC GCCATGTTTT chrI:6171619-6171699 15 9.29e-05 CGACCATTGC CACGTCAC AGAACTCCTG chrII:5936162-5936242 49 9.29e-05 ACATAAATGC CACGTCAC ACTTTAGACA chrX:11047394-11047474 71 1.12e-04 ACGGTTACAT GACGTGTC GA chrIV:14431026-14431106 34 1.12e-04 ATGGCGAAAT GACGTGTC AACTGATAAG chrI:3514402-3514482 38 1.31e-04 CGAGAGAAGA AACGTGGC GTTGGGGACA chrV:10468396-10468476 34 1.31e-04 GTTTCGGTGC CACGTCGT TCATTTTATC chrX:15779693-15779773 38 1.31e-04 CTTTTTTTTC CACGTCGT ATAGTCGTGT chrII:7325353-7325433 66 1.31e-04 TCAAAGGAAC AACGTGGC AATCGAG chrX:11723865-11723945 32 1.31e-04 AATTATCGAC AACGTGGC CGCGAAGGTA chrII:4925498-4925578 23 1.31e-04 GATTATGGAA AACGTGGC ATAGGTCACT chrIII:13734009-13734089 62 1.31e-04 AATTGATAAT AACGTGGC GCTGGTGACG chrIV:8030242-8030322 29 1.31e-04 ATCAGAGTCT AACGTGGC AGCAGCCAAA chrII:9291760-9291840 23 1.31e-04 ACTTGACTAC AACGTGGC GTGTTTAGTT chrV:13012037-13012117 52 1.31e-04 CCATTTTTGC AACGTGGC AGTAGGTTTC chrIII:13426238-13426318 32 1.40e-04 ATTTTGAAGT GACGTGGT GAATTTTTCA chrX:5135643-5135723 54 1.50e-04 TTGAAAAAGC CACGTCGA CAGGCCGAAA chrII:5429850-5429930 24 1.50e-04 TAGCGAGTTA CACGTCGA AAGTACGCAA chrI:5550569-5550649 8 1.50e-04 TATAAAC CACGTCGA ACTGCCCTTC chrX:11710434-11710514 47 1.75e-04 GCACTTTTGC GACGTGGA GGAAGGAGTG chrI:4158248-4158328 63 1.75e-04 ATGTATTGTA TACGTGGC TGCCACAACA chrIII:13101220-13101300 38 1.75e-04 GATACTAGAT GACGTGGA AACTAGACAG chrII:5932490-5932570 35 1.75e-04 TCATTTCTTT GACGTGGA TTGATTTGAA chrX:3829830-3829910 68 1.75e-04 AAGTAAACAT TACGTGGC GGTAC chrV:5687739-5687819 11 2.02e-04 ATCGAAATGA CACGTGTT ATATGATTAC chrI:9401887-9401967 43 2.02e-04 TGAGAGAGGG CACGTGTT TTTATGTGAT chrI:6001211-6001291 32 2.02e-04 TCTAGTTTGC CACGTGTT GTCACCTGTT chrII:13664580-13664660 39 2.29e-04 TGACTATGGT CACGTGAA ATAGAAAACT chrV:6411340-6411420 51 2.29e-04 TAACTTTTTG CACGTGTA ATTTTGATAA chrI:6731848-6731928 43 2.29e-04 CACTGAAAAC CACGTGTA CCTTCCTGCA chrI:7081636-7081716 30 2.57e-04 AGACATAAAA GACGTCAC CATGTGATCT chrV:20417035-20417115 63 3.03e-04 GTTTTAATGC CACGTTTC ATAGCAATAA chrIII:6180435-6180515 61 3.03e-04 GTATAAAGTA CACGTTTC CTCCATGTGA chrIII:2948822-2948902 46 3.03e-04 ACGTCATAGC CACGTTTC CTGTCCATTT chrV:5560041-5560121 27 3.03e-04 GAAAAGTGGA CACGTTTC GAGACAGCAC chrIV:8481489-8481569 27 3.28e-04 ATTAGAGGCA CACGTCGG AGGAGCACAC chrIV:5764516-5764596 64 4.02e-04 CCCCAACTTC CACGTCAT TGATCTATG chrIV:6910245-6910325 73 4.02e-04 ACGAGTTTAC CACGTCTT chrX:530144-530224 41 4.02e-04 TTAGTTTTTA CACGTCTT ATCAGTTCTA chrIV:5586597-5586677 43 4.02e-04 CATTGGTTGC CACGTCAT CATCTGGAAT chrI:14936599-14936679 60 4.02e-04 CCTATTATGC CACGTCAT CAACCGCAAT chrIV:17171931-17172011 14 4.02e-04 ACTATATCAG CACGTTGT TCACCATCTG chrIII:3437365-3437445 32 4.02e-04 AGAATGGGAA CACGTCAT CGACAATTGA chrX:17600313-17600393 39 4.02e-04 AGGCAGGCAA AACGTGAC ACGTCATTCC chrIV:7325807-7325887 27 4.02e-04 CAATGTTTGC CACGTCAT CATCACCCCG chrIII:1223800-1223880 22 4.02e-04 CTCTTACTGC CACGTCAT ACCGACACAC chrX:3235579-3235659 5 4.02e-04 CCGG CACGTCAT ATCACCGTGG chrII:12051780-12051860 35 4.02e-04 TCACGTGTGC CACGTCTT CATTTCTATG chrI:1914013-1914093 47 4.02e-04 TATCTGTTGT GACGTGGG AATTGTTGGG chrV:8221248-8221328 39 4.02e-04 ATTTATTCGC AACGTGTC AGCAACGACA chrI:7348680-7348760 23 4.02e-04 TAAACAGTGC CACGTCAT CGTCTAAATC chrIII:12009871-12009951 40 4.02e-04 gtgtgtgtgC CACGTCAT CATTTTCTTA chrX:2370820-2370900 6 4.83e-04 TACAA AACGTGGT ACCAGCCTAT chrX:17216357-17216437 19 4.83e-04 ctctcATTTC CACGTCTA GCGGTACAAA chrX:1337205-1337285 56 4.83e-04 CACCTTTTAC CACGTCAA TTTTGTAGTG chrIII:12325394-12325474 10 4.83e-04 ACTTATCAT CACGTCTA GAATGTCTGT chrII:7892411-7892491 41 5.55e-04 TTTTATCACT GACGTGTA ACTATCAGCT chrII:12028046-12028126 51 5.55e-04 TGTAAATAGA CACGTGTG TGTGTTGGAA chrII:7352693-7352773 30 5.55e-04 TATCGGAGAT GACGTGTA TTAGTGCTGG chrI:2901037-2901117 23 5.78e-04 AAAAGAGGAC AACGTGGA AACCTGCGCA chrX:4247386-4247466 42 5.78e-04 GATGTCATGC CACGTAGC AACAACCGAA chrIV:4022529-4022609 51 5.98e-04 GAGCGAAAAG TACGTGGT TTTATGGAGC chrIV:383450-383530 35 5.98e-04 AAGAATATGA TACGTGGT CATTATCACA chrIV:7841354-7841434 19 6.38e-04 TGTTATCAGT TACGTGGA AATGGCAAAC chrIV:7094471-7094551 39 6.38e-04 CGAATTAAAA TACGTGGA AAGGACCGGA chrX:8796791-8796871 62 7.04e-04 ccgggccgcc cgcgtggc aggcgagcat chrX:13746837-13746917 28 7.04e-04 TAACCTTTGC CACGCGGC AACTGAAAGT chrII:5962752-5962832 47 8.66e-04 GAGAGTGTGC CACGTCAG CATCATGAAA chrII:9624253-9624333 38 8.66e-04 CGTTTATGCA CACGTCAG TTAAACGGTG chrI:10036050-10036130 40 8.66e-04 GACCTACGGC CACGTTGG CACACATAAA chrX:16487408-16487488 36 9.37e-04 TGCCCTTTTC CACGTTTT TGCTAATAAA chrV:13879409-13879489 17 9.37e-04 ATAATCGTTC CACGTTTT CACCCCAAGC chrX:3534353-3534433 12 9.37e-04 TTGAAACTTC CACGTTAT CAGTTTACCC chrX:11340600-11340680 60 9.37e-04 GTTTCACTGT CACGTTTT ACTCTCCCCA chrI:9488288-9488368 63 9.37e-04 CACCCGTTTC CACGTTTT CGCATTCAAA chrV:14369535-14369615 46 9.76e-04 AAATCTTCGT CTCGTCGC CCACTTCCCA chrX:5468011-5468091 48 1.07e-03 AGCGCACGTG CAAGTGGC ACGTGCAGTC chrX:11519276-11519356 48 1.07e-03 CTTTTTGGAG CACGTTTA ATTTTGATAA chrII:14489588-14489668 72 1.07e-03 CACTAGTCGC CACGTTTA T chrIV:8987008-8987088 51 1.17e-03 GCACCTTCAC CACGTAAC ACACTTTCTC chrII:8811180-8811260 48 1.31e-03 CGTATATTTC TACGTGTA CTTCTTTTTT chrX:11036842-11036922 4 1.31e-03 ACC TACGTGTA AACGTGCCTT chrX:4244643-4244723 61 1.44e-03 ATTTTTGAAC CATGTGAC TTTGAATCGA chrII:4747915-4747995 48 1.44e-03 TAAAGGTGAA CATGTGAC TTGTCTTTAA chrIV:9333202-9333282 17 1.60e-03 ATATGATCGT GTCGTCGC AGCACATTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGTGGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:8028489-8028569 6.7e-06 71_[+1]_1 chrIII:7644411-7644491 6.7e-06 44_[+1]_28 chrII:3071524-3071604 6.7e-06 39_[+1]_33 chrIII:344168-344248 6.7e-06 28_[+1]_44 chrX:4503446-4503526 6.7e-06 49_[+1]_23 chrIV:14793977-14794057 6.7e-06 28_[+1]_44 chrX:5467461-5467541 6.7e-06 22_[+1]_50 chrI:7548168-7548248 6.7e-06 54_[+1]_18 chrI:12572475-12572555 6.7e-06 13_[+1]_59 chrX:5780874-5780954 6.7e-06 27_[+1]_45 chrIII:10719141-10719221 6.7e-06 45_[+1]_27 chrV:19524811-19524891 6.7e-06 15_[+1]_57 chrI:12986999-12987079 6.7e-06 28_[+1]_44 chrIV:8113317-8113397 6.7e-06 60_[+1]_12 chrIII:3781997-3782077 6.7e-06 62_[+1]_10 chrI:96485-96565 6.7e-06 31_[+1]_41 chrIII:3875052-3875132 6.7e-06 54_[+1]_18 chrIV:94172-94252 6.7e-06 28_[+1]_44 chrIII:6395848-6395928 6.7e-06 43_[+1]_29 chrIV:10059372-10059452 6.7e-06 57_[+1]_15 chrI:8529546-8529626 6.7e-06 6_[+1]_66 chrV:12952442-12952522 1.3e-05 22_[+1]_50 chrV:19897745-19897825 2e-05 44_[+1]_28 chrIV:5834386-5834466 2e-05 27_[+1]_45 chrV:10699312-10699392 2e-05 24_[+1]_48 chrIII:10802164-10802244 2e-05 24_[+1]_48 chrV:12554384-12554464 2e-05 33_[+1]_39 chrIII:8656184-8656264 2e-05 37_[+1]_35 chrI:13064043-13064123 2e-05 50_[+1]_22 chrIII:13351154-13351234 2e-05 32_[+1]_40 chrIV:6652742-6652822 2e-05 71_[+1]_1 chrIII:5421473-5421553 2e-05 27_[+1]_45 chrV:10046477-10046557 2e-05 9_[+1]_63 chrI:8858711-8858791 2e-05 10_[+1]_62 chrII:7714824-7714904 2e-05 34_[+1]_38 chrI:4671897-4671977 2e-05 42_[+1]_30 chrIII:10379769-10379849 2e-05 20_[+1]_52 chrV:6796432-6796512 2e-05 36_[+1]_36 chrIV:5939297-5939377 2e-05 39_[+1]_33 chrI:14928109-14928189 2e-05 28_[+1]_44 chrX:12146072-12146152 2e-05 67_[+1]_5 chrI:10760338-10760418 2e-05 22_[+1]_50 chrII:6870931-6871011 2e-05 29_[+1]_43 chrI:7129590-7129670 2e-05 39_[+1]_33 chrII:7264794-7264874 3.9e-05 25_[+1]_47 chrIV:1454333-1454413 3.9e-05 29_[+1]_43 chrV:10867741-10867821 3.9e-05 72_[+1] chrI:5828900-5828980 3.9e-05 17_[+1]_55 chrII:10300514-10300594 3.9e-05 27_[+1]_45 chrIV:15929966-15930046 3.9e-05 14_[+1]_58 chrV:19203500-19203580 4.8e-05 61_[+1]_11 chrII:13190577-13190657 4.8e-05 70_[+1]_2 chrII:10861898-10861978 5.8e-05 40_[+1]_32 chrIV:8542337-8542417 9.3e-05 10_[+1]_62 chrV:20383242-20383322 9.3e-05 42_[+1]_30 chrII:9656391-9656471 9.3e-05 28_[+1]_44 chrI:881626-881706 9.3e-05 70_[+1]_2 chrV:9584613-9584693 9.3e-05 49_[+1]_23 chrIII:11774658-11774738 9.3e-05 5_[+1]_67 chrII:5338425-5338505 9.3e-05 16_[+1]_56 chrV:8769338-8769418 9.3e-05 51_[+1]_21 chrII:7864354-7864434 9.3e-05 44_[+1]_28 chrIII:6402465-6402545 9.3e-05 6_[+1]_66 chrX:4142797-4142877 9.3e-05 35_[+1]_37 chrI:6171619-6171699 9.3e-05 14_[+1]_58 chrII:5936162-5936242 9.3e-05 48_[+1]_24 chrX:11047394-11047474 0.00011 70_[+1]_2 chrIV:14431026-14431106 0.00011 33_[+1]_39 chrI:3514402-3514482 0.00013 37_[+1]_35 chrV:10468396-10468476 0.00013 33_[+1]_39 chrX:15779693-15779773 0.00013 37_[+1]_35 chrII:7325353-7325433 0.00013 65_[+1]_7 chrX:11723865-11723945 0.00013 31_[+1]_41 chrII:4925498-4925578 0.00013 22_[+1]_50 chrIII:13734009-13734089 0.00013 61_[+1]_11 chrIV:8030242-8030322 0.00013 28_[+1]_44 chrII:9291760-9291840 0.00013 22_[+1]_50 chrV:13012037-13012117 0.00013 51_[+1]_21 chrIII:13426238-13426318 0.00014 31_[+1]_41 chrX:5135643-5135723 0.00015 53_[+1]_19 chrII:5429850-5429930 0.00015 23_[+1]_49 chrI:5550569-5550649 0.00015 7_[+1]_65 chrX:11710434-11710514 0.00017 46_[+1]_26 chrI:4158248-4158328 0.00017 62_[+1]_10 chrIII:13101220-13101300 0.00017 37_[+1]_35 chrII:5932490-5932570 0.00017 34_[+1]_38 chrX:3829830-3829910 0.00017 67_[+1]_5 chrV:5687739-5687819 0.0002 10_[+1]_62 chrI:9401887-9401967 0.0002 42_[+1]_30 chrI:6001211-6001291 0.0002 31_[+1]_41 chrII:13664580-13664660 0.00023 38_[+1]_34 chrV:6411340-6411420 0.00023 50_[+1]_22 chrI:6731848-6731928 0.00023 42_[+1]_30 chrI:7081636-7081716 0.00026 29_[+1]_43 chrV:20417035-20417115 0.0003 62_[+1]_10 chrIII:6180435-6180515 0.0003 60_[+1]_12 chrIII:2948822-2948902 0.0003 45_[+1]_27 chrV:5560041-5560121 0.0003 26_[+1]_46 chrIV:8481489-8481569 0.00033 26_[+1]_46 chrIV:5764516-5764596 0.0004 63_[+1]_9 chrIV:6910245-6910325 0.0004 72_[+1] chrX:530144-530224 0.0004 40_[+1]_32 chrIV:5586597-5586677 0.0004 42_[+1]_30 chrI:14936599-14936679 0.0004 59_[+1]_13 chrIV:17171931-17172011 0.0004 13_[+1]_59 chrIII:3437365-3437445 0.0004 31_[+1]_41 chrX:17600313-17600393 0.0004 38_[+1]_34 chrIV:7325807-7325887 0.0004 26_[+1]_46 chrIII:1223800-1223880 0.0004 21_[+1]_51 chrX:3235579-3235659 0.0004 4_[+1]_68 chrII:12051780-12051860 0.0004 34_[+1]_38 chrI:1914013-1914093 0.0004 46_[+1]_26 chrV:8221248-8221328 0.0004 38_[+1]_34 chrI:7348680-7348760 0.0004 22_[+1]_50 chrIII:12009871-12009951 0.0004 39_[+1]_33 chrX:2370820-2370900 0.00048 5_[+1]_67 chrX:17216357-17216437 0.00048 18_[+1]_54 chrX:1337205-1337285 0.00048 55_[+1]_17 chrIII:12325394-12325474 0.00048 9_[+1]_63 chrII:7892411-7892491 0.00055 40_[+1]_32 chrII:12028046-12028126 0.00055 50_[+1]_22 chrII:7352693-7352773 0.00055 29_[+1]_43 chrI:2901037-2901117 0.00058 22_[+1]_50 chrX:4247386-4247466 0.00058 41_[+1]_31 chrIV:4022529-4022609 0.0006 50_[+1]_22 chrIV:383450-383530 0.0006 34_[+1]_38 chrIV:7841354-7841434 0.00064 18_[+1]_54 chrIV:7094471-7094551 0.00064 38_[+1]_34 chrX:8796791-8796871 0.0007 61_[+1]_11 chrX:13746837-13746917 0.0007 27_[+1]_45 chrII:5962752-5962832 0.00087 46_[+1]_26 chrII:9624253-9624333 0.00087 37_[+1]_35 chrI:10036050-10036130 0.00087 39_[+1]_33 chrX:16487408-16487488 0.00094 35_[+1]_37 chrV:13879409-13879489 0.00094 16_[+1]_56 chrX:3534353-3534433 0.00094 11_[+1]_61 chrX:11340600-11340680 0.00094 59_[+1]_13 chrI:9488288-9488368 0.00094 62_[+1]_10 chrV:14369535-14369615 0.00098 45_[+1]_27 chrX:5468011-5468091 0.0011 47_[+1]_25 chrX:11519276-11519356 0.0011 47_[+1]_25 chrII:14489588-14489668 0.0011 71_[+1]_1 chrIV:8987008-8987088 0.0012 50_[+1]_22 chrII:8811180-8811260 0.0013 47_[+1]_25 chrX:11036842-11036922 0.0013 3_[+1]_69 chrX:4244643-4244723 0.0014 60_[+1]_12 chrII:4747915-4747995 0.0014 47_[+1]_25 chrIV:9333202-9333282 0.0016 16_[+1]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGTGGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACGTGGC width=8 seqs=148 chrIV:8028489-8028569 ( 72) CACGTGGC 1 chrIII:7644411-7644491 ( 45) CACGTGGC 1 chrII:3071524-3071604 ( 40) CACGTGGC 1 chrIII:344168-344248 ( 29) CACGTGGC 1 chrX:4503446-4503526 ( 50) CACGTGGC 1 chrIV:14793977-14794057 ( 29) CACGTGGC 1 chrX:5467461-5467541 ( 23) CACGTGGC 1 chrI:7548168-7548248 ( 55) CACGTGGC 1 chrI:12572475-12572555 ( 14) CACGTGGC 1 chrX:5780874-5780954 ( 28) CACGTGGC 1 chrIII:10719141-10719221 ( 46) CACGTGGC 1 chrV:19524811-19524891 ( 16) CACGTGGC 1 chrI:12986999-12987079 ( 29) CACGTGGC 1 chrIV:8113317-8113397 ( 61) CACGTGGC 1 chrIII:3781997-3782077 ( 63) CACGTGGC 1 chrI:96485-96565 ( 32) CACGTGGC 1 chrIII:3875052-3875132 ( 55) CACGTGGC 1 chrIV:94172-94252 ( 29) CACGTGGC 1 chrIII:6395848-6395928 ( 44) CACGTGGC 1 chrIV:10059372-10059452 ( 58) CACGTGGC 1 chrI:8529546-8529626 ( 7) CACGTGGC 1 chrV:12952442-12952522 ( 23) CACGTCGC 1 chrV:19897745-19897825 ( 45) GACGTGGC 1 chrIV:5834386-5834466 ( 28) GACGTGGC 1 chrV:10699312-10699392 ( 25) GACGTGGC 1 chrIII:10802164-10802244 ( 25) GACGTGGC 1 chrV:12554384-12554464 ( 34) GACGTGGC 1 chrIII:8656184-8656264 ( 38) GACGTGGC 1 chrI:13064043-13064123 ( 51) GACGTGGC 1 chrIII:13351154-13351234 ( 33) GACGTGGC 1 chrIV:6652742-6652822 ( 72) GACGTGGC 1 chrIII:5421473-5421553 ( 28) GACGTGGC 1 chrV:10046477-10046557 ( 10) GACGTGGC 1 chrI:8858711-8858791 ( 11) GACGTGGC 1 chrII:7714824-7714904 ( 35) GACGTGGC 1 chrI:4671897-4671977 ( 43) GACGTGGC 1 chrIII:10379769-10379849 ( 21) GACGTGGC 1 chrV:6796432-6796512 ( 37) GACGTGGC 1 chrIV:5939297-5939377 ( 40) GACGTGGC 1 chrI:14928109-14928189 ( 29) GACGTGGC 1 chrX:12146072-12146152 ( 68) GACGTGGC 1 chrI:10760338-10760418 ( 23) GACGTGGC 1 chrII:6870931-6871011 ( 30) GACGTGGC 1 chrI:7129590-7129670 ( 40) GACGTGGC 1 chrII:7264794-7264874 ( 26) CACGTGTC 1 chrIV:1454333-1454413 ( 30) CACGTGTC 1 chrV:10867741-10867821 ( 73) CACGTGAC 1 chrI:5828900-5828980 ( 18) CACGTGTC 1 chrII:10300514-10300594 ( 28) CACGTGAC 1 chrIV:15929966-15930046 ( 15) CACGTGTC 1 chrV:19203500-19203580 ( 62) CACGTGGT 1 chrII:13190577-13190657 ( 71) CACGTGGT 1 chrII:10861898-10861978 ( 41) CACGTGGA 1 chrIV:8542337-8542417 ( 11) CACGTCAC 1 chrV:20383242-20383322 ( 43) CACGTCTC 1 chrII:9656391-9656471 ( 29) CACGTTGC 1 chrI:881626-881706 ( 71) CACGTCAC 1 chrV:9584613-9584693 ( 50) CACGTCAC 1 chrIII:11774658-11774738 ( 6) CACGTCAC 1 chrII:5338425-5338505 ( 17) CACGTCAC 1 chrV:8769338-8769418 ( 52) CACGTTGC 1 chrII:7864354-7864434 ( 45) CACGTCAC 1 chrIII:6402465-6402545 ( 7) CACGTCAC 1 chrX:4142797-4142877 ( 36) CACGTCAC 1 chrI:6171619-6171699 ( 15) CACGTCAC 1 chrII:5936162-5936242 ( 49) CACGTCAC 1 chrX:11047394-11047474 ( 71) GACGTGTC 1 chrIV:14431026-14431106 ( 34) GACGTGTC 1 chrI:3514402-3514482 ( 38) AACGTGGC 1 chrV:10468396-10468476 ( 34) CACGTCGT 1 chrX:15779693-15779773 ( 38) CACGTCGT 1 chrII:7325353-7325433 ( 66) AACGTGGC 1 chrX:11723865-11723945 ( 32) AACGTGGC 1 chrII:4925498-4925578 ( 23) AACGTGGC 1 chrIII:13734009-13734089 ( 62) AACGTGGC 1 chrIV:8030242-8030322 ( 29) AACGTGGC 1 chrII:9291760-9291840 ( 23) AACGTGGC 1 chrV:13012037-13012117 ( 52) AACGTGGC 1 chrIII:13426238-13426318 ( 32) GACGTGGT 1 chrX:5135643-5135723 ( 54) CACGTCGA 1 chrII:5429850-5429930 ( 24) CACGTCGA 1 chrI:5550569-5550649 ( 8) CACGTCGA 1 chrX:11710434-11710514 ( 47) GACGTGGA 1 chrI:4158248-4158328 ( 63) TACGTGGC 1 chrIII:13101220-13101300 ( 38) GACGTGGA 1 chrII:5932490-5932570 ( 35) GACGTGGA 1 chrX:3829830-3829910 ( 68) TACGTGGC 1 chrV:5687739-5687819 ( 11) CACGTGTT 1 chrI:9401887-9401967 ( 43) CACGTGTT 1 chrI:6001211-6001291 ( 32) CACGTGTT 1 chrII:13664580-13664660 ( 39) CACGTGAA 1 chrV:6411340-6411420 ( 51) CACGTGTA 1 chrI:6731848-6731928 ( 43) CACGTGTA 1 chrI:7081636-7081716 ( 30) GACGTCAC 1 chrV:20417035-20417115 ( 63) CACGTTTC 1 chrIII:6180435-6180515 ( 61) CACGTTTC 1 chrIII:2948822-2948902 ( 46) CACGTTTC 1 chrV:5560041-5560121 ( 27) CACGTTTC 1 chrIV:8481489-8481569 ( 27) CACGTCGG 1 chrIV:5764516-5764596 ( 64) CACGTCAT 1 chrIV:6910245-6910325 ( 73) CACGTCTT 1 chrX:530144-530224 ( 41) CACGTCTT 1 chrIV:5586597-5586677 ( 43) CACGTCAT 1 chrI:14936599-14936679 ( 60) CACGTCAT 1 chrIV:17171931-17172011 ( 14) CACGTTGT 1 chrIII:3437365-3437445 ( 32) CACGTCAT 1 chrX:17600313-17600393 ( 39) AACGTGAC 1 chrIV:7325807-7325887 ( 27) CACGTCAT 1 chrIII:1223800-1223880 ( 22) CACGTCAT 1 chrX:3235579-3235659 ( 5) CACGTCAT 1 chrII:12051780-12051860 ( 35) CACGTCTT 1 chrI:1914013-1914093 ( 47) GACGTGGG 1 chrV:8221248-8221328 ( 39) AACGTGTC 1 chrI:7348680-7348760 ( 23) CACGTCAT 1 chrIII:12009871-12009951 ( 40) CACGTCAT 1 chrX:2370820-2370900 ( 6) AACGTGGT 1 chrX:17216357-17216437 ( 19) CACGTCTA 1 chrX:1337205-1337285 ( 56) CACGTCAA 1 chrIII:12325394-12325474 ( 10) CACGTCTA 1 chrII:7892411-7892491 ( 41) GACGTGTA 1 chrII:12028046-12028126 ( 51) CACGTGTG 1 chrII:7352693-7352773 ( 30) GACGTGTA 1 chrI:2901037-2901117 ( 23) AACGTGGA 1 chrX:4247386-4247466 ( 42) CACGTAGC 1 chrIV:4022529-4022609 ( 51) TACGTGGT 1 chrIV:383450-383530 ( 35) TACGTGGT 1 chrIV:7841354-7841434 ( 19) TACGTGGA 1 chrIV:7094471-7094551 ( 39) TACGTGGA 1 chrX:8796791-8796871 ( 62) CGCGTGGC 1 chrX:13746837-13746917 ( 28) CACGCGGC 1 chrII:5962752-5962832 ( 47) CACGTCAG 1 chrII:9624253-9624333 ( 38) CACGTCAG 1 chrI:10036050-10036130 ( 40) CACGTTGG 1 chrX:16487408-16487488 ( 36) CACGTTTT 1 chrV:13879409-13879489 ( 17) CACGTTTT 1 chrX:3534353-3534433 ( 12) CACGTTAT 1 chrX:11340600-11340680 ( 60) CACGTTTT 1 chrI:9488288-9488368 ( 63) CACGTTTT 1 chrV:14369535-14369615 ( 46) CTCGTCGC 1 chrX:5468011-5468091 ( 48) CAAGTGGC 1 chrX:11519276-11519356 ( 48) CACGTTTA 1 chrII:14489588-14489668 ( 72) CACGTTTA 1 chrIV:8987008-8987088 ( 51) CACGTAAC 1 chrII:8811180-8811260 ( 48) TACGTGTA 1 chrX:11036842-11036922 ( 4) TACGTGTA 1 chrX:4244643-4244723 ( 61) CATGTGAC 1 chrII:4747915-4747995 ( 48) CATGTGAC 1 chrIV:9333202-9333282 ( 17) GTCGTCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGTGGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.10074 E= 1.7e-101 -185 163 11 -245 174 -1385 -493 -444 -543 224 -1385 -444 -1385 -1385 228 -1385 -1385 -493 -1385 175 -443 31 161 -154 -48 -1385 146 -40 -98 157 -235 -59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGTGGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 148 E= 1.7e-101 0.081081 0.641892 0.222973 0.054054 0.979730 0.000000 0.006757 0.013514 0.006757 0.979730 0.000000 0.013514 0.000000 0.000000 1.000000 0.000000 0.000000 0.006757 0.000000 0.993243 0.013514 0.256757 0.628378 0.101351 0.209459 0.000000 0.567568 0.222973 0.148649 0.614865 0.040541 0.195946 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACGTGGC MEME-1 regular expression -------------------------------------------------------------------------------- [CG]ACGT[GC][GTA]C -------------------------------------------------------------------------------- Time 8.50 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTTATCA MEME-2 width = 8 sites = 68 llr = 547 E-value = 2.2e-029 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTTATCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::9::8 pos.-specific C 18::1:a: probability G 11:::::1 matrix T 81aa:a:1 bits 2.3 * 2.1 * 1.8 ** ** 1.6 ** ** Relative 1.4 ** ** Entropy 1.1 ****** (11.6 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCTTATCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2370820-2370900 36 2.73e-05 ATGCAATAAT TCTTATCA GTGAAAATTT chrII:7264794-7264874 6 2.73e-05 CAATC TCTTATCA GGTAACTTTC chrV:10801261-10801341 63 2.73e-05 CTTTTTCGGG TCTTATCA CAATCAAATG chrIV:8542337-8542417 62 2.73e-05 ATAATTCTAG TCTTATCA AAAAAAAAAA chrX:4244643-4244723 14 2.73e-05 ACCCCGGTAT TCTTATCA GACAAAAGGG chrIII:5137271-5137351 10 2.73e-05 CTCGCGGCT TCTTATCA CTTAAAAACT chrX:5467461-5467541 70 2.73e-05 TCGGCTGTAA TCTTATCA GTT chrIII:600764-600844 36 2.73e-05 AAGCAGTGTT TCTTATCA ACTTATTGAT chrIII:13608024-13608104 34 2.73e-05 AATTGGAAAC TCTTATCA TCATTGATGA chrIV:9651487-9651567 25 2.73e-05 ACTCAATACG TCTTATCA TTAAACACGT chrV:10802240-10802320 66 2.73e-05 GTCAACCTTC TCTTATCA GCTTCTT chrV:19053486-19053566 28 2.73e-05 CTTACCTGGC TCTTATCA CCAACTATCT chrIV:8987008-8987088 3 2.73e-05 CT TCTTATCA TTATTAATAT chrI:881626-881706 22 2.73e-05 TTTTGCGGAG TCTTATCA CATACTGATA chrV:13377288-13377368 3 2.73e-05 TT TCTTATCA GTTGGAGTTT chrX:11047394-11047474 9 2.73e-05 CTTGAGTT TCTTATCA ACACTTTATT chrX:3256960-3257040 72 2.73e-05 CACTACTTCA TCTTATCA T chrI:3710797-3710877 18 2.73e-05 TGATAGGGTT TCTTATCA GTTTCAACTA chrV:13012037-13012117 68 2.73e-05 GCAGTAGGTT TCTTATCA GTGGA chrIII:9786902-9786982 34 2.73e-05 ATAAGAAGTT TCTTATCA ATTTGTCAAT chrI:7348680-7348760 64 2.73e-05 TGTGCTTAAC TCTTATCA CTTTTTTAT chrI:14051925-14052005 3 2.73e-05 CT TCTTATCA GTAGCTATCA chrIV:10059372-10059452 10 2.73e-05 AGAACGTTT TCTTATCA ATATTTATCT chrI:3680060-3680140 55 4.64e-05 AGACCAAACG GCTTATCA AGAAAGATTG chrX:13310904-13310984 43 4.64e-05 AAGCAACTGT GCTTATCA ATGACAACGC chrV:13879409-13879489 33 4.64e-05 TTCACCCCAA GCTTATCA GCTTCTATGC chrIII:10802164-10802244 72 4.64e-05 ATGGCACAAA GCTTATCA A chrX:3611374-3611454 49 4.64e-05 AAACCGTGTC GCTTATCA ATGCGTGCCA chrI:1914013-1914093 5 4.64e-05 CTTG GCTTATCA GTATAACCAT chrX:1122357-1122437 25 6.58e-05 CGTTGTTTCA TCTTCTCA AATACTACGC chrIV:282121-282201 36 6.58e-05 ATGTGTGTGC TCTTCTCA TTTCATTCAA chrI:12986999-12987079 62 6.58e-05 ACATTTTTCT TCTTCTCA GAGTGACGTG chrX:13746837-13746917 8 6.58e-05 GCCATCC TCTTCTCA ACTAACCTTT chrX:4009089-4009169 6 9.29e-05 CGGTC TGTTATCA TTGCACAATC chrV:6492702-6492782 41 9.29e-05 GATGATAAAA TGTTATCA AAACAATTGT chrV:13212724-13212804 2 9.29e-05 G TGTTATCA AATTCGCAGT chrIV:7841354-7841434 9 9.29e-05 ATATATTT TGTTATCA GTTACGTGGA chrIV:7094471-7094551 7 9.29e-05 TCCAAA TGTTATCA TTATTCACGG chrIV:6652742-6652822 59 9.29e-05 CTTGTCAATT TGTTATCA TCCGTGACGT chrI:5384228-5384308 45 1.40e-04 TCATCTATTA CCTTATCA TTTTACACCC chrX:16487408-16487488 13 1.40e-04 GAACCGGAAG TCTTATCT TTCTTTGCCC chrV:10203774-10203854 18 1.40e-04 AAAGCAACTG TCTTATCT TTATGAAATG chrII:3246037-3246117 16 1.40e-04 GTCACACCAC CCTTATCA GTTTAACTAT chrX:11036842-11036922 18 1.40e-04 TGTAAACGTG CCTTATCA GCACACACGA chrI:5828900-5828980 29 1.40e-04 ACGTGTCATT TCTTATCT ATGTTCTCCT chrX:3235579-3235659 28 1.40e-04 CGTGGCAAAC TCTTATCT TTGCCATCTC chrIII:1002720-1002800 45 1.40e-04 CTCTATTGTT TCTTATCT CTGTGTCTGT chrI:663601-663681 21 1.59e-04 CGTTCGCTGC TCTTATCG GCTGCGCGtc chrII:9291760-9291840 63 1.59e-04 CATGCGCGAC TCTTATCG GCAACTGATG chrIII:11087588-11087668 45 1.59e-04 CGGCCGCCAT TCTTATCG CCATTTCTTT chrII:7892411-7892491 31 1.98e-04 CTATGCTCCA TTTTATCA CTGACGTGTA chrI:6727807-6727887 5 1.98e-04 CGTT TTTTATCA ATTCATTCAA chrV:10468396-10468476 45 1.98e-04 ACGTCGTTCA TTTTATCA CGTTCACATA chrIV:14431026-14431106 5 1.98e-04 TTTA TTTTATCA ACAACATTTT chrX:6517589-6517669 38 2.25e-04 AGAATTTTAG ACTTATCA ATGGCTTAAA chrII:8383009-8383089 56 2.25e-04 TGCTATTATA ACTTATCA GTTAGAGTTA chrIII:12325394-12325474 1 2.25e-04 . ACTTATCA TCACGTCTAG chrIV:9333202-9333282 59 2.57e-04 TATCAGTATA GGTTATCA AATCGAATTA chrIII:3117159-3117239 19 2.57e-04 GTGTATTGGT GGTTATCA GTTGTGATTT chrV:8603403-8603483 70 3.04e-04 CGGTCTGTTC TCTTTTCA ATA chrIII:651746-651826 38 3.04e-04 AGTAACACAT TCTTTTCA CAAGAAATCG chrIII:8748796-8748876 35 3.70e-04 TCTAGATCAT TCTTCTCT TTTTTATTGT chrX:11515572-11515652 34 3.70e-04 TGTGATGACG GCTTATCG GCTCTTTATC chrIV:7325807-7325887 57 3.70e-04 TCGCCTACTT CCTTCTCA TTTTATGACA chrIII:13351154-13351234 57 3.70e-04 TCCGTTTCCT TCTTCTCT TCATTTTTTC chrIV:13314311-13314391 8 4.16e-04 AGTTGTT CGTTATCA AACACACACA chrII:13190577-13190657 21 5.37e-04 ATACTTGGCA TTTTCTCA GTCATTTCGT chrX:2971127-2971207 10 6.49e-04 ttccctact ttttatct ctgcatctct -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2370820-2370900 2.7e-05 35_[+2]_37 chrII:7264794-7264874 2.7e-05 5_[+2]_67 chrV:10801261-10801341 2.7e-05 62_[+2]_10 chrIV:8542337-8542417 2.7e-05 61_[+2]_11 chrX:4244643-4244723 2.7e-05 13_[+2]_59 chrIII:5137271-5137351 2.7e-05 9_[+2]_63 chrX:5467461-5467541 2.7e-05 69_[+2]_3 chrIII:600764-600844 2.7e-05 35_[+2]_37 chrIII:13608024-13608104 2.7e-05 33_[+2]_39 chrIV:9651487-9651567 2.7e-05 24_[+2]_48 chrV:10802240-10802320 2.7e-05 65_[+2]_7 chrV:19053486-19053566 2.7e-05 27_[+2]_45 chrIV:8987008-8987088 2.7e-05 2_[+2]_70 chrI:881626-881706 2.7e-05 21_[+2]_51 chrV:13377288-13377368 2.7e-05 2_[+2]_70 chrX:11047394-11047474 2.7e-05 8_[+2]_64 chrX:3256960-3257040 2.7e-05 71_[+2]_1 chrI:3710797-3710877 2.7e-05 17_[+2]_55 chrV:13012037-13012117 2.7e-05 67_[+2]_5 chrIII:9786902-9786982 2.7e-05 33_[+2]_39 chrI:7348680-7348760 2.7e-05 63_[+2]_9 chrI:14051925-14052005 2.7e-05 2_[+2]_70 chrIV:10059372-10059452 2.7e-05 9_[+2]_63 chrI:3680060-3680140 4.6e-05 54_[+2]_18 chrX:13310904-13310984 4.6e-05 42_[+2]_30 chrV:13879409-13879489 4.6e-05 32_[+2]_40 chrIII:10802164-10802244 4.6e-05 71_[+2]_1 chrX:3611374-3611454 4.6e-05 48_[+2]_24 chrI:1914013-1914093 4.6e-05 4_[+2]_68 chrX:1122357-1122437 6.6e-05 24_[+2]_48 chrIV:282121-282201 6.6e-05 35_[+2]_37 chrI:12986999-12987079 6.6e-05 61_[+2]_11 chrX:13746837-13746917 6.6e-05 7_[+2]_65 chrX:4009089-4009169 9.3e-05 5_[+2]_67 chrV:6492702-6492782 9.3e-05 40_[+2]_32 chrV:13212724-13212804 9.3e-05 1_[+2]_71 chrIV:7841354-7841434 9.3e-05 8_[+2]_64 chrIV:7094471-7094551 9.3e-05 6_[+2]_66 chrIV:6652742-6652822 9.3e-05 58_[+2]_14 chrI:5384228-5384308 0.00014 44_[+2]_28 chrX:16487408-16487488 0.00014 12_[+2]_60 chrV:10203774-10203854 0.00014 17_[+2]_55 chrII:3246037-3246117 0.00014 15_[+2]_57 chrX:11036842-11036922 0.00014 17_[+2]_55 chrI:5828900-5828980 0.00014 28_[+2]_44 chrX:3235579-3235659 0.00014 27_[+2]_45 chrIII:1002720-1002800 0.00014 44_[+2]_28 chrI:663601-663681 0.00016 20_[+2]_52 chrII:9291760-9291840 0.00016 62_[+2]_10 chrIII:11087588-11087668 0.00016 44_[+2]_28 chrII:7892411-7892491 0.0002 30_[+2]_42 chrI:6727807-6727887 0.0002 4_[+2]_68 chrV:10468396-10468476 0.0002 44_[+2]_28 chrIV:14431026-14431106 0.0002 4_[+2]_68 chrX:6517589-6517669 0.00022 37_[+2]_35 chrII:8383009-8383089 0.00022 55_[+2]_17 chrIII:12325394-12325474 0.00022 [+2]_72 chrIV:9333202-9333282 0.00026 58_[+2]_14 chrIII:3117159-3117239 0.00026 18_[+2]_54 chrV:8603403-8603483 0.0003 69_[+2]_3 chrIII:651746-651826 0.0003 37_[+2]_35 chrIII:8748796-8748876 0.00037 34_[+2]_38 chrX:11515572-11515652 0.00037 33_[+2]_39 chrIV:7325807-7325887 0.00037 56_[+2]_16 chrIII:13351154-13351234 0.00037 56_[+2]_16 chrIV:13314311-13314391 0.00042 7_[+2]_65 chrII:13190577-13190657 0.00054 20_[+2]_52 chrX:2971127-2971207 0.00065 9_[+2]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTTATCA width=8 seqs=68 chrX:2370820-2370900 ( 36) TCTTATCA 1 chrII:7264794-7264874 ( 6) TCTTATCA 1 chrV:10801261-10801341 ( 63) TCTTATCA 1 chrIV:8542337-8542417 ( 62) TCTTATCA 1 chrX:4244643-4244723 ( 14) TCTTATCA 1 chrIII:5137271-5137351 ( 10) TCTTATCA 1 chrX:5467461-5467541 ( 70) TCTTATCA 1 chrIII:600764-600844 ( 36) TCTTATCA 1 chrIII:13608024-13608104 ( 34) TCTTATCA 1 chrIV:9651487-9651567 ( 25) TCTTATCA 1 chrV:10802240-10802320 ( 66) TCTTATCA 1 chrV:19053486-19053566 ( 28) TCTTATCA 1 chrIV:8987008-8987088 ( 3) TCTTATCA 1 chrI:881626-881706 ( 22) TCTTATCA 1 chrV:13377288-13377368 ( 3) TCTTATCA 1 chrX:11047394-11047474 ( 9) TCTTATCA 1 chrX:3256960-3257040 ( 72) TCTTATCA 1 chrI:3710797-3710877 ( 18) TCTTATCA 1 chrV:13012037-13012117 ( 68) TCTTATCA 1 chrIII:9786902-9786982 ( 34) TCTTATCA 1 chrI:7348680-7348760 ( 64) TCTTATCA 1 chrI:14051925-14052005 ( 3) TCTTATCA 1 chrIV:10059372-10059452 ( 10) TCTTATCA 1 chrI:3680060-3680140 ( 55) GCTTATCA 1 chrX:13310904-13310984 ( 43) GCTTATCA 1 chrV:13879409-13879489 ( 33) GCTTATCA 1 chrIII:10802164-10802244 ( 72) GCTTATCA 1 chrX:3611374-3611454 ( 49) GCTTATCA 1 chrI:1914013-1914093 ( 5) GCTTATCA 1 chrX:1122357-1122437 ( 25) TCTTCTCA 1 chrIV:282121-282201 ( 36) TCTTCTCA 1 chrI:12986999-12987079 ( 62) TCTTCTCA 1 chrX:13746837-13746917 ( 8) TCTTCTCA 1 chrX:4009089-4009169 ( 6) TGTTATCA 1 chrV:6492702-6492782 ( 41) TGTTATCA 1 chrV:13212724-13212804 ( 2) TGTTATCA 1 chrIV:7841354-7841434 ( 9) TGTTATCA 1 chrIV:7094471-7094551 ( 7) TGTTATCA 1 chrIV:6652742-6652822 ( 59) TGTTATCA 1 chrI:5384228-5384308 ( 45) CCTTATCA 1 chrX:16487408-16487488 ( 13) TCTTATCT 1 chrV:10203774-10203854 ( 18) TCTTATCT 1 chrII:3246037-3246117 ( 16) CCTTATCA 1 chrX:11036842-11036922 ( 18) CCTTATCA 1 chrI:5828900-5828980 ( 29) TCTTATCT 1 chrX:3235579-3235659 ( 28) TCTTATCT 1 chrIII:1002720-1002800 ( 45) TCTTATCT 1 chrI:663601-663681 ( 21) TCTTATCG 1 chrII:9291760-9291840 ( 63) TCTTATCG 1 chrIII:11087588-11087668 ( 45) TCTTATCG 1 chrII:7892411-7892491 ( 31) TTTTATCA 1 chrI:6727807-6727887 ( 5) TTTTATCA 1 chrV:10468396-10468476 ( 45) TTTTATCA 1 chrIV:14431026-14431106 ( 5) TTTTATCA 1 chrX:6517589-6517669 ( 38) ACTTATCA 1 chrII:8383009-8383089 ( 56) ACTTATCA 1 chrIII:12325394-12325474 ( 1) ACTTATCA 1 chrIV:9333202-9333282 ( 59) GGTTATCA 1 chrIII:3117159-3117239 ( 19) GGTTATCA 1 chrV:8603403-8603483 ( 70) TCTTTTCA 1 chrIII:651746-651826 ( 38) TCTTTTCA 1 chrIII:8748796-8748876 ( 35) TCTTCTCT 1 chrX:11515572-11515652 ( 34) GCTTATCG 1 chrIV:7325807-7325887 ( 57) CCTTCTCA 1 chrIII:13351154-13351234 ( 57) TCTTCTCT 1 chrIV:13314311-13314391 ( 8) CGTTATCA 1 chrII:13190577-13190657 ( 21) TTTTCTCA 1 chrX:2971127-2971207 ( 10) TTTTATCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.85972 E= 2.2e-029 -273 -149 -64 135 -1273 191 -64 -174 -1273 -1273 -1273 176 -1273 -1273 -1273 176 154 -81 -1273 -332 -1273 -1273 -1273 176 -1273 227 -1273 -1273 149 -1273 -181 -132 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 68 E= 2.2e-029 0.044118 0.073529 0.132353 0.750000 0.000000 0.779412 0.132353 0.088235 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.852941 0.117647 0.000000 0.029412 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.823529 0.000000 0.058824 0.117647 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTATCA MEME-2 regular expression -------------------------------------------------------------------------------- TCTTATCA -------------------------------------------------------------------------------- Time 11.98 secs. ******************************************************************************** ******************************************************************************** MOTIF TGATAAGA MEME-3 width = 8 sites = 34 llr = 308 E-value = 3.6e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGATAAGA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1:a:aa:8 pos.-specific C ::::::11 probability G :a::::81 matrix T 9::a:::: bits 2.3 * 2.1 * 1.8 ** ** 1.6 ***** Relative 1.4 ******* Entropy 1.1 ******* (13.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGATAAGA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATAAGA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:5659639-5659719 38 2.67e-05 GTGACTGAAG TGATAAGA GGAGAAGGTG chrV:19203500-19203580 6 2.67e-05 TTCAC TGATAAGA ATGATCTTTG chrII:13664580-13664660 18 2.67e-05 GATGTGAAAA TGATAAGA AAATGACTAT chrX:530144-530224 64 2.67e-05 TTCTACAAAA TGATAAGA CAAAAGTGG chrIII:5201400-5201480 24 2.67e-05 GTTTAATCAT TGATAAGA ATTGAATTGA chrV:14830482-14830562 11 2.67e-05 TCGTAGCAGA TGATAAGA AACTCGATTT chrIV:8032291-8032371 38 2.67e-05 AGACGTAAAC TGATAAGA ACGACAACTT chrX:8932545-8932625 23 2.67e-05 GGCAGTTCAT TGATAAGA TAAAATGCAC chrI:5408485-5408565 8 2.67e-05 GAGGGAT TGATAAGA AAATGGGAGA chrX:5468011-5468091 17 2.67e-05 TTTGCTAAAC TGATAAGA CTTTTTGATA chrIV:8481489-8481569 45 2.67e-05 AGGAGCACAC TGATAAGA GGTGATAAAA chrIV:383450-383530 21 2.67e-05 TAAAGTATAC TGATAAGA ATATGATACG chrIII:10719141-10719221 12 2.67e-05 ATAAAATGGT TGATAAGA CTTTCAGTGG chrII:5932490-5932570 67 2.67e-05 AGAGAACTAG TGATAAGA GAGAAA chrI:14657211-14657291 65 2.67e-05 CTATTTCAAC TGATAAGA TAATCTGA chrII:4925498-4925578 40 2.67e-05 CATAGGTCAC TGATAAGA ATAACGGAAT chrX:2544790-2544870 53 2.67e-05 GCTGTAATAC TGATAAGA AATGGCAAAA chrIII:5421473-5421553 13 2.67e-05 AGGGGGCGAC TGATAAGA GGCTGATGAC chrIV:14431026-14431106 45 2.67e-05 ACGTGTCAAC TGATAAGA ATGAGGTTTT chrI:9401887-9401967 57 4.55e-05 TGTTTTTATG TGATAAGG AATACAAAAT chrIV:4022529-4022609 6 4.55e-05 GATGA TGATAAGG ACGGAGACGC chrX:3534353-3534433 64 4.55e-05 CGAGAAGTTC TGATAAGG AAAATGAAA chrIII:2948822-2948902 64 4.55e-05 CTGTCCATTT TGATAAGG TTGATGATA chrV:8267402-8267482 65 7.23e-05 TTAATTTCGC TGATAACA CAAGTAAA chrIV:10332032-10332112 36 7.23e-05 GCGAAAGTGT TGATAACA CAAAGAAATG chrX:3256960-3257040 44 7.23e-05 AGAACAACAC TGATAACA ACTGTCCGAC chrIV:10059372-10059452 68 7.23e-05 CACGTGGCAA TGATAACA ACTTA chrI:7354335-7354415 46 9.12e-05 AGAATTCGTC TGATAAGC CACGTAAACC chrX:1148595-1148675 33 9.12e-05 CATATTATTG TGATAAGC GCTTTGATTT chrX:9212830-9212910 54 1.18e-04 AAGAGTTTAA AGATAAGA TTTGTGTTTA chrIV:10243396-10243476 43 1.18e-04 AGTAAATAAT AGATAAGA AAATGGTGGT chrIV:8030242-8030322 60 1.37e-04 TTGTGATTGA TGATAACG AGTGACGGTG chrX:10477730-10477810 45 1.63e-04 TAAGACGAAC TGAAAAGA ATGTGTAAAC chrIV:8026509-8026589 44 2.01e-04 TGTCTCTCTA TGATAATA TTACAAAATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATAAGA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:5659639-5659719 2.7e-05 37_[+3]_35 chrV:19203500-19203580 2.7e-05 5_[+3]_67 chrII:13664580-13664660 2.7e-05 17_[+3]_55 chrX:530144-530224 2.7e-05 63_[+3]_9 chrIII:5201400-5201480 2.7e-05 23_[+3]_49 chrV:14830482-14830562 2.7e-05 10_[+3]_62 chrIV:8032291-8032371 2.7e-05 37_[+3]_35 chrX:8932545-8932625 2.7e-05 22_[+3]_50 chrI:5408485-5408565 2.7e-05 7_[+3]_65 chrX:5468011-5468091 2.7e-05 16_[+3]_56 chrIV:8481489-8481569 2.7e-05 44_[+3]_28 chrIV:383450-383530 2.7e-05 20_[+3]_52 chrIII:10719141-10719221 2.7e-05 11_[+3]_61 chrII:5932490-5932570 2.7e-05 66_[+3]_6 chrI:14657211-14657291 2.7e-05 64_[+3]_8 chrII:4925498-4925578 2.7e-05 39_[+3]_33 chrX:2544790-2544870 2.7e-05 52_[+3]_20 chrIII:5421473-5421553 2.7e-05 12_[+3]_60 chrIV:14431026-14431106 2.7e-05 44_[+3]_28 chrI:9401887-9401967 4.5e-05 56_[+3]_16 chrIV:4022529-4022609 4.5e-05 5_[+3]_67 chrX:3534353-3534433 4.5e-05 63_[+3]_9 chrIII:2948822-2948902 4.5e-05 63_[+3]_9 chrV:8267402-8267482 7.2e-05 64_[+3]_8 chrIV:10332032-10332112 7.2e-05 35_[+3]_37 chrX:3256960-3257040 7.2e-05 43_[+3]_29 chrIV:10059372-10059452 7.2e-05 67_[+3]_5 chrI:7354335-7354415 9.1e-05 45_[+3]_27 chrX:1148595-1148675 9.1e-05 32_[+3]_40 chrX:9212830-9212910 0.00012 53_[+3]_19 chrIV:10243396-10243476 0.00012 42_[+3]_30 chrIV:8030242-8030322 0.00014 59_[+3]_13 chrX:10477730-10477810 0.00016 44_[+3]_28 chrIV:8026509-8026589 0.0002 43_[+3]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATAAGA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGATAAGA width=8 seqs=34 chrIV:5659639-5659719 ( 38) TGATAAGA 1 chrV:19203500-19203580 ( 6) TGATAAGA 1 chrII:13664580-13664660 ( 18) TGATAAGA 1 chrX:530144-530224 ( 64) TGATAAGA 1 chrIII:5201400-5201480 ( 24) TGATAAGA 1 chrV:14830482-14830562 ( 11) TGATAAGA 1 chrIV:8032291-8032371 ( 38) TGATAAGA 1 chrX:8932545-8932625 ( 23) TGATAAGA 1 chrI:5408485-5408565 ( 8) TGATAAGA 1 chrX:5468011-5468091 ( 17) TGATAAGA 1 chrIV:8481489-8481569 ( 45) TGATAAGA 1 chrIV:383450-383530 ( 21) TGATAAGA 1 chrIII:10719141-10719221 ( 12) TGATAAGA 1 chrII:5932490-5932570 ( 67) TGATAAGA 1 chrI:14657211-14657291 ( 65) TGATAAGA 1 chrII:4925498-4925578 ( 40) TGATAAGA 1 chrX:2544790-2544870 ( 53) TGATAAGA 1 chrIII:5421473-5421553 ( 13) TGATAAGA 1 chrIV:14431026-14431106 ( 45) TGATAAGA 1 chrI:9401887-9401967 ( 57) TGATAAGG 1 chrIV:4022529-4022609 ( 6) TGATAAGG 1 chrX:3534353-3534433 ( 64) TGATAAGG 1 chrIII:2948822-2948902 ( 64) TGATAAGG 1 chrV:8267402-8267482 ( 65) TGATAACA 1 chrIV:10332032-10332112 ( 36) TGATAACA 1 chrX:3256960-3257040 ( 44) TGATAACA 1 chrIV:10059372-10059452 ( 68) TGATAACA 1 chrI:7354335-7354415 ( 46) TGATAAGC 1 chrX:1148595-1148675 ( 33) TGATAAGC 1 chrX:9212830-9212910 ( 54) AGATAAGA 1 chrIV:10243396-10243476 ( 43) AGATAAGA 1 chrIV:8030242-8030322 ( 60) TGATAACG 1 chrX:10477730-10477810 ( 45) TGAAAAGA 1 chrIV:8026509-8026589 ( 44) TGATAATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATAAGA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.86128 E= 3.6e-012 -231 -1173 -1173 168 -1173 -1173 228 -1173 177 -1173 -1173 -1173 -331 -1173 -1173 172 177 -1173 -1173 -1173 177 -1173 -1173 -1173 -1173 -49 200 -332 144 -181 -49 -1173 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATAAGA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 3.6e-012 0.058824 0.000000 0.000000 0.941176 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.029412 0.000000 0.000000 0.970588 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.147059 0.823529 0.029412 0.794118 0.058824 0.147059 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATAAGA MEME-3 regular expression -------------------------------------------------------------------------------- TGATAAGA -------------------------------------------------------------------------------- Time 15.31 secs. ******************************************************************************** ******************************************************************************** MOTIF SYBTCTCT MEME-4 width = 8 sites = 31 llr = 268 E-value = 1.7e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif SYBTCTCT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 555:a:a: probability G 513::::: matrix T :42a:a:a bits 2.3 * * 2.1 * * 1.8 ***** 1.6 ***** Relative 1.4 * ***** Entropy 1.1 * ***** (12.5 bits) 0.9 * ***** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCCTCTCT consensus CTG sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYBTCTCT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:12931602-12931682 1 9.61e-06 . GCCTCTCT ATTGTATTTG chrIV:5764516-5764596 32 1.93e-05 GAAAATAGAA CCCTCTCT TCGCGTGGTA chrV:10699312-10699392 71 1.93e-05 CATGAGAATG CCCTCTCT GT chrIII:13606259-13606339 43 1.93e-05 ACTGATAACT CCCTCTCT CACTTCGTTC chrII:3071524-3071604 2 2.88e-05 T GCGTCTCT CGTCGTCTCG chrX:4503446-4503526 14 2.88e-05 TGTTGTGTCT GCGTCTCT CATCCCTCTT chrV:4720117-4720197 39 2.88e-05 TAGAATGTCT GCGTCTCT TGCCTCTCGT chrV:18868620-18868700 35 2.88e-05 ttctatgtct gcgtctCT TCACTAACTC chrX:5780874-5780954 70 2.88e-05 ATTGCTGTCT GCGTCTCT CTT chrI:663601-663681 71 2.88e-05 ctctcgtctc gcgtctct cg chrI:6001211-6001291 9 2.88e-05 TCTCTCTG GCGTCTCT ATGCCTCTAG chrV:20383242-20383322 72 5.21e-05 tgtttctctc gtctctct c chrIV:8026509-8026589 35 5.21e-05 ATGGGGCGGT GTCTCTCT ATGATAATAT chrIV:12849183-12849263 20 5.21e-05 TCACTCTTTT CCGTCTCT TTCAAAAATA chrIII:1223800-1223880 8 5.21e-05 AAAGTTC CCGTCTCT TACTGCCACG chrI:12826724-12826804 25 6.58e-05 tcgtctcttt ctctctct ctATTCATAC chrX:17216357-17216437 5 6.58e-05 ctct ctctctct cATTTCCACG chrX:2971127-2971207 30 6.58e-05 gcatctctct ctctctct ctttctctct chrX:13226884-13226964 61 6.58e-05 TCctctatct ctctctct ctccctcact chrIII:9059164-9059244 15 6.58e-05 CATTCCAGTG CTCTCTCT TGCTTGTTTC chrIII:12325394-12325474 26 7.94e-05 TAGAATGTCT GTGTCTCT TGATTAAACA chrIV:11788793-11788873 64 9.31e-05 AAGTGCTAGT GCTTCTCT CTTTCTGTG chrIII:1002720-1002800 31 9.31e-05 CATTTTCTCT GCTTCTCT ATTGTTTCTT chrII:6026804-6026884 25 1.49e-04 CATTTTCTCT GTTTCTCT ATGTCTCTAA chrIV:8987008-8987088 70 1.49e-04 CACTTTCTCT GTTTCTCT AAT chrV:9584613-9584693 67 1.49e-04 CAAGAGGAAT GTTTCTCT GAATCT chrI:8011535-8011615 4 1.49e-04 TTC GTTTCTCT CTTCAATGCC chrV:462404-462484 61 1.78e-04 ATTTTCTCTG CGCTCTCT TCAAAGTTCA chrIV:13314311-13314391 58 1.78e-04 GTGATACTGT CGCTCTCT AAATCATGGA chrIII:8696812-8696892 36 1.78e-04 ACATTCGTCA CTTTCTCT CATTCTCTCG chrX:12146072-12146152 42 1.78e-04 AACAACAGTG CGCTCTCT CCGTGTGGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYBTCTCT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:12931602-12931682 9.6e-06 [+4]_72 chrIV:5764516-5764596 1.9e-05 31_[+4]_41 chrV:10699312-10699392 1.9e-05 70_[+4]_2 chrIII:13606259-13606339 1.9e-05 42_[+4]_30 chrII:3071524-3071604 2.9e-05 1_[+4]_71 chrX:4503446-4503526 2.9e-05 13_[+4]_59 chrV:4720117-4720197 2.9e-05 38_[+4]_34 chrV:18868620-18868700 2.9e-05 34_[+4]_38 chrX:5780874-5780954 2.9e-05 69_[+4]_3 chrI:663601-663681 2.9e-05 70_[+4]_2 chrI:6001211-6001291 2.9e-05 8_[+4]_64 chrV:20383242-20383322 5.2e-05 71_[+4]_1 chrIV:8026509-8026589 5.2e-05 34_[+4]_38 chrIV:12849183-12849263 5.2e-05 19_[+4]_53 chrIII:1223800-1223880 5.2e-05 7_[+4]_65 chrI:12826724-12826804 6.6e-05 24_[+4]_48 chrX:17216357-17216437 6.6e-05 4_[+4]_68 chrX:2971127-2971207 6.6e-05 29_[+4]_43 chrX:13226884-13226964 6.6e-05 60_[+4]_12 chrIII:9059164-9059244 6.6e-05 14_[+4]_58 chrIII:12325394-12325474 7.9e-05 25_[+4]_47 chrIV:11788793-11788873 9.3e-05 63_[+4]_9 chrIII:1002720-1002800 9.3e-05 30_[+4]_42 chrII:6026804-6026884 0.00015 24_[+4]_48 chrIV:8987008-8987088 0.00015 69_[+4]_3 chrV:9584613-9584693 0.00015 66_[+4]_6 chrI:8011535-8011615 0.00015 3_[+4]_69 chrV:462404-462484 0.00018 60_[+4]_12 chrIV:13314311-13314391 0.00018 57_[+4]_15 chrIII:8696812-8696892 0.00018 35_[+4]_37 chrX:12146072-12146152 0.00018 41_[+4]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYBTCTCT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SYBTCTCT width=8 seqs=31 chrII:12931602-12931682 ( 1) GCCTCTCT 1 chrIV:5764516-5764596 ( 32) CCCTCTCT 1 chrV:10699312-10699392 ( 71) CCCTCTCT 1 chrIII:13606259-13606339 ( 43) CCCTCTCT 1 chrII:3071524-3071604 ( 2) GCGTCTCT 1 chrX:4503446-4503526 ( 14) GCGTCTCT 1 chrV:4720117-4720197 ( 39) GCGTCTCT 1 chrV:18868620-18868700 ( 35) GCGTCTCT 1 chrX:5780874-5780954 ( 70) GCGTCTCT 1 chrI:663601-663681 ( 71) GCGTCTCT 1 chrI:6001211-6001291 ( 9) GCGTCTCT 1 chrV:20383242-20383322 ( 72) GTCTCTCT 1 chrIV:8026509-8026589 ( 35) GTCTCTCT 1 chrIV:12849183-12849263 ( 20) CCGTCTCT 1 chrIII:1223800-1223880 ( 8) CCGTCTCT 1 chrI:12826724-12826804 ( 25) CTCTCTCT 1 chrX:17216357-17216437 ( 5) CTCTCTCT 1 chrX:2971127-2971207 ( 30) CTCTCTCT 1 chrX:13226884-13226964 ( 61) CTCTCTCT 1 chrIII:9059164-9059244 ( 15) CTCTCTCT 1 chrIII:12325394-12325474 ( 26) GTGTCTCT 1 chrIV:11788793-11788873 ( 64) GCTTCTCT 1 chrIII:1002720-1002800 ( 31) GCTTCTCT 1 chrII:6026804-6026884 ( 25) GTTTCTCT 1 chrIV:8987008-8987088 ( 70) GTTTCTCT 1 chrV:9584613-9584693 ( 67) GTTTCTCT 1 chrI:8011535-8011615 ( 4) GTTTCTCT 1 chrV:462404-462484 ( 61) CGCTCTCT 1 chrIV:13314311-13314391 ( 58) CGCTCTCT 1 chrIII:8696812-8696892 ( 36) CTTTCTCT 1 chrX:12146072-12146152 ( 42) CGCTCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYBTCTCT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4993 E= 1.7e-002 -1160 113 141 -1160 -1160 123 -109 51 -1160 113 65 -38 -1160 -1160 -1160 176 -1160 227 -1160 -1160 -1160 -1160 -1160 176 -1160 227 -1160 -1160 -1160 -1160 -1160 176 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYBTCTCT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 1.7e-002 0.000000 0.451613 0.548387 0.000000 0.000000 0.483871 0.096774 0.419355 0.000000 0.451613 0.322581 0.225806 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYBTCTCT MEME-4 regular expression -------------------------------------------------------------------------------- [GC][CT][CGT]TCTCT -------------------------------------------------------------------------------- Time 18.57 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCCACGT MEME-5 width = 8 sites = 23 llr = 198 E-value = 1.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCCACGT MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::1:a:12 pos.-specific C 2:9a:a11 probability G :a::::6: matrix T 8:::::17 bits 2.3 * * * 2.1 * * * 1.8 *** * 1.6 ***** Relative 1.4 ***** Entropy 1.1 ****** (12.4 bits) 0.9 ****** 0.7 ****** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGCCACGT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCACGT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:663601-663681 6 9.50e-06 TTCGC TGCCACGT TCGCTGCTCT chrIII:1002720-1002800 72 9.50e-06 TTGGCTCGGC TGCCACGT G chrIII:8748796-8748876 58 1.62e-05 ATTGTAAAAA CGCCACGT TCATGCATAA chrX:2544790-2544870 16 1.62e-05 CGATTGAAAG CGCCACGT TTGTAACAAC chrI:5287369-5287449 46 2.56e-05 AGAAGCTTGA TGCCACGA CAAACTGTGT chrIII:6248262-6248342 40 2.56e-05 CTTTTGAATT TGCCACGA CTACACACCG chrIII:5137271-5137351 33 3.52e-05 AAACTGAAAC TGCCACCT CTTACACGGT chrX:4245218-4245298 1 3.52e-05 . TGCCACCT CAAACATATG chrI:14936599-14936679 45 3.52e-05 ACAAGTCCAA TGCCACCT ATTATGCCAC chrX:3611374-3611454 62 4.19e-05 TATCAATGCG TGCCACGC ATTACACCTT chrI:5550569-5550649 50 4.19e-05 AACATACTTT TGCCACGC AATGGTGCAC chrX:15355764-15355844 4 6.89e-05 CAA TGCCACAT AGAAATGAGC chrX:2971127-2971207 50 6.89e-05 ttctctctAC TGCCACTT TCAGAAAAGA chrX:11340600-11340680 37 6.89e-05 AAGGTGAAAA TGCCACTT TCAGAGTTTC chrIII:7315305-7315385 72 6.89e-05 TATGATAACC TGCCACAT T chrV:10802240-10802320 44 6.89e-05 CGTCATAATC TGCCACAT GACTGTCAAC chrV:10046477-10046557 49 6.89e-05 CACCCATAAC TGCCACtt cttctttttt chrV:10203774-10203854 46 7.55e-05 GACGCGATCA TGCCACGG AGAGGCAGCA chrIV:6910245-6910325 31 8.22e-05 TGGTGGGTCT CGCCACGA ATGGCTCCGA chrIII:7952250-7952330 10 8.22e-05 CGCAGGTCC CGCCACGA TCGTGTTGGC chrI:14657211-14657291 23 9.56e-05 CATTTATCGT TGACACGT TCGTAACTTT chrIV:13327203-13327283 26 9.56e-05 TCCTTCCACT TGACACGT AAAACATGCA chrV:20383242-20383322 9 1.09e-04 CTCACTCT TGCCGCGT TGGAAAAATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCACGT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:663601-663681 9.5e-06 5_[+5]_67 chrIII:1002720-1002800 9.5e-06 71_[+5]_1 chrIII:8748796-8748876 1.6e-05 57_[+5]_15 chrX:2544790-2544870 1.6e-05 15_[+5]_57 chrI:5287369-5287449 2.6e-05 45_[+5]_27 chrIII:6248262-6248342 2.6e-05 39_[+5]_33 chrIII:5137271-5137351 3.5e-05 32_[+5]_40 chrX:4245218-4245298 3.5e-05 [+5]_72 chrI:14936599-14936679 3.5e-05 44_[+5]_28 chrX:3611374-3611454 4.2e-05 61_[+5]_11 chrI:5550569-5550649 4.2e-05 49_[+5]_23 chrX:15355764-15355844 6.9e-05 3_[+5]_69 chrX:2971127-2971207 6.9e-05 49_[+5]_23 chrX:11340600-11340680 6.9e-05 36_[+5]_36 chrIII:7315305-7315385 6.9e-05 71_[+5]_1 chrV:10802240-10802320 6.9e-05 43_[+5]_29 chrV:10046477-10046557 6.9e-05 48_[+5]_24 chrV:10203774-10203854 7.6e-05 45_[+5]_27 chrIV:6910245-6910325 8.2e-05 30_[+5]_42 chrIII:7952250-7952330 8.2e-05 9_[+5]_63 chrI:14657211-14657291 9.6e-05 22_[+5]_50 chrIV:13327203-13327283 9.6e-05 25_[+5]_47 chrV:20383242-20383322 0.00011 8_[+5]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCACGT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCCACGT width=8 seqs=23 chrI:663601-663681 ( 6) TGCCACGT 1 chrIII:1002720-1002800 ( 72) TGCCACGT 1 chrIII:8748796-8748876 ( 58) CGCCACGT 1 chrX:2544790-2544870 ( 16) CGCCACGT 1 chrI:5287369-5287449 ( 46) TGCCACGA 1 chrIII:6248262-6248342 ( 40) TGCCACGA 1 chrIII:5137271-5137351 ( 33) TGCCACCT 1 chrX:4245218-4245298 ( 1) TGCCACCT 1 chrI:14936599-14936679 ( 45) TGCCACCT 1 chrX:3611374-3611454 ( 62) TGCCACGC 1 chrI:5550569-5550649 ( 50) TGCCACGC 1 chrX:15355764-15355844 ( 4) TGCCACAT 1 chrX:2971127-2971207 ( 50) TGCCACTT 1 chrX:11340600-11340680 ( 37) TGCCACTT 1 chrIII:7315305-7315385 ( 72) TGCCACAT 1 chrV:10802240-10802320 ( 44) TGCCACAT 1 chrV:10046477-10046557 ( 49) TGCCACTT 1 chrV:10203774-10203854 ( 46) TGCCACGG 1 chrIV:6910245-6910325 ( 31) CGCCACGA 1 chrIII:7952250-7952330 ( 10) CGCCACGA 1 chrI:14657211-14657291 ( 23) TGACACGT 1 chrIV:13327203-13327283 ( 26) TGACACGT 1 chrV:20383242-20383322 ( 9) TGCCGCGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCACGT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.23674 E= 1.5e+004 -1117 -25 -1117 149 -1117 -1117 228 -1117 -175 214 -1117 -1117 -1117 227 -1117 -1117 171 -1117 -224 -1117 -1117 227 -1117 -1117 -116 -67 156 -117 -75 -125 -224 124 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCACGT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 1.5e+004 0.000000 0.173913 0.000000 0.826087 0.000000 0.000000 1.000000 0.000000 0.086957 0.913043 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.956522 0.000000 0.043478 0.000000 0.000000 1.000000 0.000000 0.000000 0.130435 0.130435 0.608696 0.130435 0.173913 0.086957 0.043478 0.695652 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCCACGT MEME-5 regular expression -------------------------------------------------------------------------------- TGCCACGT -------------------------------------------------------------------------------- Time 21.79 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:7129590-7129670 7.21e-02 39_[+1(2.00e-05)]_33 chrII:6870931-6871011 9.00e-02 29_[+1(2.00e-05)]_43 chrI:8529546-8529626 1.05e-01 6_[+1(6.66e-06)]_66 chrI:10760338-10760418 4.94e-03 22_[+1(2.00e-05)]_50 chrIII:12009871-12009951 5.81e-03 36_[+5(9.50e-06)]_36 chrX:12146072-12146152 2.43e-03 67_[+1(2.00e-05)]_5 chrIV:10059372-10059452 1.03e-05 9_[+2(2.73e-05)]_40_[+1(6.66e-06)]_\ 2_[+3(7.23e-05)]_5 chrI:14051925-14052005 6.18e-02 2_[+2(2.73e-05)]_70 chrIII:11087588-11087668 3.02e-02 80 chrIII:6248262-6248342 2.40e-02 39_[+5(2.56e-05)]_33 chrI:14928109-14928189 5.40e-03 28_[+1(2.00e-05)]_44 chrIV:5939297-5939377 2.66e-02 39_[+1(2.00e-05)]_33 chrI:7348680-7348760 5.57e-05 19_[+5(9.50e-06)]_36_[+2(2.73e-05)]_\ 9 chrX:13746837-13746917 4.57e-04 7_[+2(6.58e-05)]_9_[+5(4.19e-05)]_\ 48 chrV:6796432-6796512 1.79e-02 36_[+1(2.00e-05)]_26_[+1(3.89e-05)]_\ 2 chrIV:14431026-14431106 3.71e-04 44_[+3(2.67e-05)]_28 chrIII:10379769-10379849 4.82e-02 20_[+1(2.00e-05)]_52 chrI:10036050-10036130 1.47e-01 80 chrI:4671897-4671977 5.43e-03 42_[+1(2.00e-05)]_30 chrIII:9786902-9786982 4.92e-02 33_[+2(2.73e-05)]_39 chrV:8221248-8221328 6.74e-02 80 chrII:7352693-7352773 3.46e-02 80 chrV:13012037-13012117 1.21e-03 67_[+2(2.73e-05)]_5 chrX:4247386-4247466 1.27e-02 38_[+5(9.50e-06)]_34 chrII:5936162-5936242 1.12e-03 45_[+5(9.50e-06)]_27 chrII:7714824-7714904 2.40e-02 34_[+1(2.00e-05)]_38 chrI:1914013-1914093 2.11e-02 4_[+2(4.64e-05)]_68 chrIII:6395848-6395928 3.14e-03 43_[+1(6.66e-06)]_29 chrX:3829830-3829910 4.18e-02 80 chrIV:94172-94252 5.10e-04 28_[+1(6.66e-06)]_44 chrIII:1002720-1002800 1.82e-04 30_[+4(9.31e-05)]_33_[+5(9.50e-06)]_\ 1 chrII:12051780-12051860 4.25e-04 31_[+5(9.50e-06)]_41 chrI:8858711-8858791 4.09e-02 10_[+1(2.00e-05)]_62 chrII:12931602-12931682 1.98e-02 [+4(9.61e-06)]_20_[+4(2.88e-05)]_44 chrI:6171619-6171699 8.39e-04 11_[+5(9.50e-06)]_61 chrIII:651746-651826 7.26e-02 80 chrX:4142797-4142877 8.82e-04 32_[+5(9.50e-06)]_40 chrIII:3875052-3875132 5.33e-04 54_[+1(6.66e-06)]_18 chrV:10046477-10046557 1.72e-04 9_[+1(2.00e-05)]_31_[+5(6.89e-05)]_\ 24 chrIII:5421473-5421553 3.02e-03 12_[+3(2.67e-05)]_7_[+1(2.00e-05)]_\ 45 chrIII:6402465-6402545 1.75e-03 3_[+5(9.50e-06)]_69 chrX:2544790-2544870 7.28e-04 15_[+5(1.62e-05)]_29_[+3(2.67e-05)]_\ 20 chrV:5560041-5560121 2.81e-01 80 chrI:5550569-5550649 6.75e-03 49_[+5(4.19e-05)]_23 chrI:96485-96565 2.40e-04 31_[+1(6.66e-06)]_41 chrX:3235579-3235659 7.49e-03 80 chrII:9291760-9291840 2.82e-03 80 chrIV:6652742-6652822 5.08e-03 58_[+2(9.29e-05)]_5_[+1(2.00e-05)]_\ 1 chrI:6001211-6001291 9.62e-07 8_[+4(2.88e-05)]_12_[+5(9.50e-06)]_\ 44 chrIV:7094471-7094551 4.58e-02 6_[+2(9.29e-05)]_66 chrIII:12325394-12325474 9.32e-04 25_[+4(7.94e-05)]_47 chrIV:15929966-15930046 1.67e-03 11_[+5(1.62e-05)]_61 chrII:14489588-14489668 1.82e-03 68_[+5(1.62e-05)]_4 chrIV:8030242-8030322 2.29e-02 80 chrIV:3167036-3167116 8.63e-01 80 chrII:7864354-7864434 1.05e-01 44_[+1(9.29e-05)]_28 chrIII:13351154-13351234 2.41e-03 32_[+1(2.00e-05)]_40 chrIII:3781997-3782077 3.25e-03 62_[+1(6.66e-06)]_10 chrII:13190577-13190657 4.06e-03 70_[+1(4.84e-05)]_2 chrIII:13734009-13734089 2.25e-02 80 chrIII:1223800-1223880 8.83e-05 7_[+4(5.21e-05)]_3_[+5(9.50e-06)]_\ 54 chrII:10300514-10300594 5.86e-02 27_[+1(3.89e-05)]_6_[+1(9.29e-05)]_\ 31 chrIV:8113317-8113397 4.50e-02 60_[+1(6.66e-06)]_12 chrIV:7325807-7325887 2.19e-05 23_[+5(9.50e-06)]_49 chrI:5828900-5828980 2.29e-05 14_[+5(9.50e-06)]_58 chrII:4925498-4925578 1.33e-02 39_[+3(2.67e-05)]_33 chrII:5429850-5429930 1.77e-01 80 chrI:13064043-13064123 5.02e-02 50_[+1(2.00e-05)]_22 chrI:3710797-3710877 4.13e-03 17_[+2(2.73e-05)]_55 chrI:12986999-12987079 8.55e-06 28_[+1(6.66e-06)]_25_[+2(6.58e-05)]_\ 11 chrX:5135643-5135723 2.63e-02 80 chrIV:9872890-9872970 6.96e-02 80 chrI:6731848-6731928 3.23e-02 80 chrX:3611374-3611454 7.15e-04 48_[+2(4.64e-05)]_5_[+5(4.19e-05)]_\ 11 chrV:19524811-19524891 1.37e-03 15_[+1(6.66e-06)]_57 chrV:8769338-8769418 2.85e-02 51_[+1(9.29e-05)]_21 chrV:6411340-6411420 5.73e-02 80 chrIV:13327203-13327283 6.08e-03 25_[+5(9.56e-05)]_47 chrIII:8696812-8696892 4.88e-02 80 chrI:663601-663681 1.82e-05 5_[+5(9.50e-06)]_20_[+4(2.88e-05)]_\ 29_[+4(2.88e-05)]_2 chrI:14657211-14657291 1.56e-04 22_[+5(9.56e-05)]_34_[+3(2.67e-05)]_\ 8 chrX:17600313-17600393 1.51e-02 42_[+5(9.56e-05)]_30 chrX:11036842-11036922 3.59e-02 80 chrX:3256960-3257040 2.74e-03 43_[+3(7.23e-05)]_20_[+2(2.73e-05)]_\ 1 chrIV:10243396-10243476 2.12e-01 80 chrIII:3437365-3437445 2.80e-01 80 chrX:11047394-11047474 5.36e-04 8_[+2(2.73e-05)]_64 chrI:1296611-1296691 3.95e-01 80 chrII:5932490-5932570 3.17e-03 66_[+3(2.67e-05)]_6 chrIII:8656184-8656264 3.18e-02 37_[+1(2.00e-05)]_35 chrV:12554384-12554464 1.17e-02 33_[+1(2.00e-05)]_39 chrIII:10719141-10719221 1.56e-03 11_[+3(2.67e-05)]_26_[+1(6.66e-06)]_\ 27 chrX:11723865-11723945 9.59e-03 80 chrIV:383450-383530 5.54e-03 20_[+3(2.67e-05)]_52 chrI:9488288-9488368 1.19e-01 80 chrIV:17171931-17172011 8.63e-02 80 chrX:5780874-5780954 8.55e-04 27_[+1(6.66e-06)]_34_[+4(2.88e-05)]_\ 3 chrII:3246037-3246117 4.05e-02 80 chrII:9624253-9624333 2.31e-01 80 chrII:5338425-5338505 1.05e-01 16_[+1(9.29e-05)]_56 chrIII:10802164-10802244 1.06e-03 24_[+1(2.00e-05)]_39_[+2(4.64e-05)]_\ 1 chrV:13377288-13377368 1.91e-02 2_[+2(2.73e-05)]_70 chrI:14936599-14936679 2.60e-03 44_[+5(3.52e-05)]_4_[+5(9.50e-06)]_\ 16 chrIII:13101220-13101300 7.44e-02 80 chrIV:7841354-7841434 1.50e-02 8_[+2(9.29e-05)]_64 chrI:8011535-8011615 2.51e-02 80 chrII:7325353-7325433 1.34e-01 80 chrIV:8481489-8481569 2.58e-02 44_[+3(2.67e-05)]_28 chrII:4747915-4747995 5.57e-01 80 chrIII:11774658-11774738 4.98e-03 5_[+1(9.29e-05)]_67 chrV:18868620-18868700 8.45e-02 34_[+4(2.88e-05)]_38 chrII:6878093-6878173 7.15e-01 80 chrV:13212724-13212804 1.67e-02 1_[+2(9.29e-05)]_71 chrX:1148595-1148675 2.13e-01 32_[+3(9.12e-05)]_40 chrV:9584613-9584693 9.37e-06 46_[+5(9.50e-06)]_26 chrI:881626-881706 5.52e-06 21_[+2(2.73e-05)]_38_[+5(9.50e-06)]_\ 5 chrI:12572475-12572555 6.34e-04 13_[+1(6.66e-06)]_59 chrIV:9674098-9674178 6.19e-01 80 chrIII:9326658-9326738 1.03e-01 80 chrIII:647375-647455 5.33e-01 80 chrX:15779693-15779773 1.25e-02 80 chrIII:13426238-13426318 1.43e-01 80 chrI:4158248-4158328 7.57e-03 80 chrIV:8987008-8987088 5.23e-04 2_[+2(2.73e-05)]_70 chrI:7354335-7354415 3.40e-02 45_[+3(9.12e-05)]_27 chrX:8820796-8820876 7.38e-01 80 chrV:12741847-12741927 4.81e-01 80 chrII:10861898-10861978 5.77e-02 40_[+1(5.77e-05)]_32 chrV:19053486-19053566 2.27e-02 27_[+2(2.73e-05)]_45 chrV:8603403-8603483 2.42e-02 80 chrI:5287369-5287449 1.03e-01 45_[+5(2.56e-05)]_27 chrII:6026804-6026884 6.26e-02 80 chrIII:2948822-2948902 3.87e-03 63_[+3(4.55e-05)]_9 chrIV:13314311-13314391 7.74e-03 80 chrX:11519276-11519356 7.26e-02 80 chrX:5468011-5468091 6.54e-03 16_[+3(2.67e-05)]_5_[+3(9.12e-05)]_\ 43 chrIV:5586597-5586677 7.36e-03 39_[+5(9.50e-06)]_33 chrV:10802240-10802320 1.00e-04 43_[+5(6.89e-05)]_14_[+2(2.73e-05)]_\ 7 chrIII:6625431-6625511 1.68e-01 80 chrV:10867741-10867821 2.48e-02 72_[+1(3.89e-05)] chrX:4245218-4245298 7.36e-02 [+5(3.52e-05)]_72 chrI:12194265-12194345 5.78e-01 80 chrIV:11788793-11788873 5.09e-02 63_[+4(9.31e-05)]_9 chrV:10468396-10468476 2.66e-04 30_[+5(9.50e-06)]_42 chrIII:7315305-7315385 6.51e-03 71_[+5(6.89e-05)]_1 chrI:7081636-7081716 1.34e-01 80 chrI:7548168-7548248 8.98e-04 54_[+1(6.66e-06)]_18 chrIII:7952250-7952330 7.02e-02 9_[+5(8.22e-05)]_63 chrIV:9651487-9651567 3.86e-02 24_[+2(2.73e-05)]_48 chrI:6727807-6727887 4.12e-01 80 chrV:4720117-4720197 1.54e-03 38_[+4(2.88e-05)]_34 chrI:5408485-5408565 2.46e-01 7_[+3(2.67e-05)]_65 chrIII:13606259-13606339 2.45e-02 42_[+4(1.93e-05)]_30 chrIII:13608024-13608104 4.12e-02 33_[+2(2.73e-05)]_39 chrIV:10347676-10347756 3.61e-01 80 chrIV:282121-282201 7.63e-02 35_[+2(6.58e-05)]_37 chrX:11340600-11340680 3.54e-03 36_[+5(6.89e-05)]_36 chrX:7233897-7233977 9.30e-01 80 chrIV:12849183-12849263 5.38e-02 19_[+4(5.21e-05)]_24_[+4(6.58e-05)]_\ 21 chrIII:600764-600844 1.36e-03 35_[+2(2.73e-05)]_37 chrX:11710434-11710514 1.70e-01 80 chrX:3534353-3534433 2.92e-04 63_[+3(4.55e-05)]_9 chrX:5467461-5467541 4.41e-04 22_[+1(6.66e-06)]_39_[+2(2.73e-05)]_\ 3 chrII:8383009-8383089 1.72e-01 80 chrV:13879409-13879489 1.82e-03 32_[+2(4.64e-05)]_40 chrV:10699312-10699392 6.66e-04 24_[+1(2.00e-05)]_38_[+4(1.93e-05)]_\ 2 chrX:8932545-8932625 8.80e-03 22_[+3(2.67e-05)]_50 chrX:6517589-6517669 1.83e-01 80 chrIV:14793977-14794057 1.27e-03 28_[+1(6.66e-06)]_44 chrIII:3117159-3117239 7.56e-02 80 chrII:5962752-5962832 2.40e-02 43_[+5(9.50e-06)]_29 chrII:12028046-12028126 4.91e-02 80 chrX:10477730-10477810 1.79e-02 80 chrX:1337205-1337285 1.42e-02 80 chrIV:8032291-8032371 3.99e-02 37_[+3(2.67e-05)]_35 chrV:14830482-14830562 3.58e-03 10_[+3(2.67e-05)]_12_[+3(2.67e-05)]_\ 42 chrIII:9059164-9059244 6.46e-02 14_[+4(6.58e-05)]_58 chrIII:9507938-9508018 8.98e-02 80 chrII:9656391-9656471 5.89e-03 28_[+1(9.29e-05)]_44 chrII:5281279-5281359 3.57e-01 80 chrV:20164754-20164834 3.54e-01 80 chrX:9540608-9540688 9.66e-01 80 chrX:11515572-11515652 3.09e-02 80 chrIV:8026509-8026589 8.16e-03 34_[+4(5.21e-05)]_38 chrV:12952442-12952522 1.69e-02 22_[+1(1.33e-05)]_50 chrIV:9333202-9333282 6.18e-02 80 chrX:13360048-13360128 1.25e-01 80 chrIII:5137271-5137351 7.42e-04 9_[+2(2.73e-05)]_15_[+5(3.52e-05)]_\ 40 chrII:7892411-7892491 2.60e-03 80 chrIII:5201400-5201480 1.20e-01 23_[+3(2.67e-05)]_49 chrIV:9647921-9648001 4.95e-01 80 chrX:13226884-13226964 2.12e-01 58_[+4(6.58e-05)]_14 chrX:530144-530224 1.06e-04 44_[+2(2.73e-05)]_11_[+3(2.67e-05)]_\ 9 chrIV:6910245-6910325 8.89e-03 30_[+5(8.22e-05)]_42 chrV:8302679-8302759 5.24e-01 80 chrII:13664580-13664660 1.66e-03 17_[+3(2.67e-05)]_55 chrV:14369535-14369615 1.33e-01 80 chrV:10203774-10203854 4.83e-03 45_[+5(7.55e-05)]_27 chrX:4503446-4503526 6.74e-05 13_[+4(2.88e-05)]_28_[+1(6.66e-06)]_\ 23 chrI:3514402-3514482 1.71e-01 80 chrIV:4022529-4022609 3.30e-02 5_[+3(4.55e-05)]_67 chrIV:5834386-5834466 1.31e-03 27_[+1(2.00e-05)]_45 chrX:13310904-13310984 5.22e-02 42_[+2(4.64e-05)]_30 chrX:2971127-2971207 1.63e-04 23_[+4(6.58e-05)]_[+4(6.58e-05)]_10_\ [+5(6.89e-05)]_23 chrX:600822-600902 7.91e-01 80 chrIV:10332032-10332112 1.15e-01 35_[+3(7.23e-05)]_37 chrIII:6180435-6180515 5.24e-01 80 chrV:20383242-20383322 1.54e-05 39_[+5(9.50e-06)]_24_[+4(5.21e-05)]_\ 1 chrIV:1454333-1454413 3.76e-02 29_[+1(3.89e-05)]_43 chrI:2901037-2901117 3.97e-02 80 chrV:8267402-8267482 3.56e-02 64_[+3(7.23e-05)]_8 chrX:17216357-17216437 1.05e-02 [+4(6.58e-05)]_72 chrIII:344168-344248 1.15e-04 28_[+1(6.66e-06)]_44 chrII:8484714-8484794 9.31e-01 80 chrX:4244643-4244723 3.48e-02 13_[+2(2.73e-05)]_59 chrI:9401887-9401967 1.37e-02 56_[+3(4.55e-05)]_16 chrII:8811180-8811260 2.73e-01 80 chrIV:8542337-8542417 5.93e-06 7_[+5(9.50e-06)]_46_[+2(2.73e-05)]_\ 11 chrIII:8748796-8748876 2.92e-04 57_[+5(1.62e-05)]_15 chrV:10801261-10801341 5.52e-02 62_[+2(2.73e-05)]_10 chrIII:8654709-8654789 9.26e-02 80 chrII:3786705-3786785 3.54e-01 80 chrV:462404-462484 6.31e-02 80 chrII:7264794-7264874 9.40e-05 5_[+2(2.73e-05)]_12_[+1(3.89e-05)]_\ 47 chrI:12826724-12826804 4.17e-03 24_[+4(6.58e-05)]_48 chrV:20417035-20417115 6.77e-03 59_[+5(9.50e-06)]_13 chrX:7576090-7576170 1.61e-01 80 chrV:19203500-19203580 2.19e-04 5_[+3(2.67e-05)]_48_[+1(4.84e-05)]_\ 11 chrV:5687739-5687819 3.24e-03 7_[+5(9.56e-05)]_65 chrX:16487408-16487488 4.48e-03 80 chrII:3071524-3071604 3.12e-06 1_[+4(2.88e-05)]_30_[+1(6.66e-06)]_\ 33 chrIII:7644411-7644491 2.34e-02 44_[+1(6.66e-06)]_28 chrV:19897745-19897825 2.23e-02 44_[+1(2.00e-05)]_28 chrI:3680060-3680140 1.40e-02 54_[+2(4.64e-05)]_18 chrIV:9010483-9010563 7.50e-01 80 chrII:13665387-13665467 3.71e-01 80 chrX:8422193-8422273 2.39e-01 80 chrIV:8028489-8028569 1.25e-03 71_[+1(6.66e-06)]_1 chrV:6492702-6492782 2.43e-02 40_[+2(9.29e-05)]_32 chrIV:5764516-5764596 4.45e-04 31_[+4(1.93e-05)]_41 chrX:1122357-1122437 1.35e-01 24_[+2(6.58e-05)]_48 chrI:5384228-5384308 2.03e-02 80 chrIV:5659639-5659719 8.36e-02 37_[+3(2.67e-05)]_35 chrX:4009089-4009169 8.23e-02 5_[+2(9.29e-05)]_67 chrX:2580709-2580789 7.28e-01 80 chrX:2370820-2370900 6.44e-03 35_[+2(2.73e-05)]_37 chrX:15355764-15355844 3.18e-02 3_[+5(6.89e-05)]_69 chrI:7762562-7762642 1.80e-01 80 chrX:9212830-9212910 6.76e-02 80 chrX:8796791-8796871 6.07e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************