******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/cog-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:9553254-9553334 1.0000 80 chrI:9546389-9546469 1.0000 80 chrIV:15107317-15107397 1.0000 80 chrI:9541313-9541393 1.0000 80 chrI:9542312-9542392 1.0000 80 chrI:9550800-9550880 1.0000 80 chrI:9551386-9551466 1.0000 80 chrI:9555101-9555181 1.0000 80 chrI:9525235-9525315 1.0000 80 chrI:9549036-9549116 1.0000 80 chrI:2829224-2829304 1.0000 80 chrII:13985882-13985962 1.0000 80 chrI:9539558-9539638 1.0000 80 chrI:9553460-9553540 1.0000 80 chrII:7809468-7809548 1.0000 80 chrX:11369079-11369159 1.0000 80 chrV:2278673-2278753 1.0000 80 chrX:15347834-15347914 1.0000 80 chrIII:12178280-12178360 1.0000 80 chrIII:5668097-5668177 1.0000 80 chrV:18589673-18589753 1.0000 80 chrX:2920554-2920634 1.0000 80 chrI:9547120-9547200 1.0000 80 chrIV:8170320-8170400 1.0000 80 chrX:5818234-5818314 1.0000 80 chrII:9491217-9491297 1.0000 80 chrII:8748175-8748255 1.0000 80 chrI:10585425-10585505 1.0000 80 chrIV:5600437-5600517 1.0000 80 chrIV:6648791-6648871 1.0000 80 chrV:18710174-18710254 1.0000 80 chrX:5140256-5140336 1.0000 80 chrIV:16047752-16047832 1.0000 80 chrX:13169312-13169392 1.0000 80 chrI:13843249-13843329 1.0000 80 chrV:11281506-11281586 1.0000 80 chrX:7232663-7232743 1.0000 80 chrV:6797047-6797127 1.0000 80 chrI:4032604-4032684 1.0000 80 chrIII:12084874-12084954 1.0000 80 chrIV:5526799-5526879 1.0000 80 chrIV:14032871-14032951 1.0000 80 chrII:6825896-6825976 1.0000 80 chrI:9538697-9538777 1.0000 80 chrX:10204470-10204550 1.0000 80 chrX:5480374-5480454 1.0000 80 chrX:6689351-6689431 1.0000 80 chrI:8783762-8783842 1.0000 80 chrII:7814425-7814505 1.0000 80 chrII:6836380-6836460 1.0000 80 chrX:5781091-5781171 1.0000 80 chrIII:4010304-4010384 1.0000 80 chrII:7364215-7364295 1.0000 80 chrII:11567479-11567559 1.0000 80 chrIV:12634028-12634108 1.0000 80 chrIII:3543254-3543334 1.0000 80 chrX:1120489-1120569 1.0000 80 chrIII:6948032-6948112 1.0000 80 chrI:7835636-7835716 1.0000 80 chrIV:3763452-3763532 1.0000 80 chrI:9545229-9545309 1.0000 80 chrIV:12686014-12686094 1.0000 80 chrV:1570880-1570960 1.0000 80 chrIII:13182125-13182205 1.0000 80 chrI:3842610-3842690 1.0000 80 chrX:6410533-6410613 1.0000 80 chrIV:5169577-5169657 1.0000 80 chrI:14070932-14071012 1.0000 80 chrIV:12158044-12158124 1.0000 80 chrIV:3014843-3014923 1.0000 80 chrV:11083946-11084026 1.0000 80 chrV:20424386-20424466 1.0000 80 chrII:15255909-15255989 1.0000 80 chrIV:3521115-3521195 1.0000 80 chrI:14067003-14067083 1.0000 80 chrV:11674041-11674121 1.0000 80 chrII:11902373-11902453 1.0000 80 chrX:4576448-4576528 1.0000 80 chrIII:2126090-2126170 1.0000 80 chrII:7084389-7084469 1.0000 80 chrI:11795388-11795468 1.0000 80 chrI:4881285-4881365 1.0000 80 chrX:871188-871268 1.0000 80 chrIII:11942782-11942862 1.0000 80 chrIII:2132183-2132263 1.0000 80 chrV:7745948-7746028 1.0000 80 chrI:7714732-7714812 1.0000 80 chrII:5092451-5092531 1.0000 80 chrX:6729761-6729841 1.0000 80 chrI:9374778-9374858 1.0000 80 chrII:6522793-6522873 1.0000 80 chrX:13143353-13143433 1.0000 80 chrX:13226887-13226967 1.0000 80 chrII:9308856-9308936 1.0000 80 chrII:10065585-10065665 1.0000 80 chrI:13528207-13528287 1.0000 80 chrII:3975124-3975204 1.0000 80 chrII:4693335-4693415 1.0000 80 chrX:6263382-6263462 1.0000 80 chrI:4299583-4299663 1.0000 80 chrX:9899854-9899934 1.0000 80 chrX:5816500-5816580 1.0000 80 chrIV:16400510-16400590 1.0000 80 chrI:7715829-7715909 1.0000 80 chrIV:15573944-15574024 1.0000 80 chrX:5818456-5818536 1.0000 80 chrII:14901892-14901972 1.0000 80 chrI:7711796-7711876 1.0000 80 chrX:12183313-12183393 1.0000 80 chrX:13420007-13420087 1.0000 80 chrIV:8533460-8533540 1.0000 80 chrIII:3716298-3716378 1.0000 80 chrX:9102348-9102428 1.0000 80 chrI:14867696-14867776 1.0000 80 chrIV:6474940-6475020 1.0000 80 chrII:11305814-11305894 1.0000 80 chrII:3897083-3897163 1.0000 80 chrI:1651404-1651484 1.0000 80 chrV:14498343-14498423 1.0000 80 chrI:6175081-6175161 1.0000 80 chrV:11074515-11074595 1.0000 80 chrII:7623576-7623656 1.0000 80 chrI:4320822-4320902 1.0000 80 chrIV:8334111-8334191 1.0000 80 chrV:14506104-14506184 1.0000 80 chrX:11666716-11666796 1.0000 80 chrV:6684708-6684788 1.0000 80 chrX:10429355-10429435 1.0000 80 chrIII:7958208-7958288 1.0000 80 chrIII:6537418-6537498 1.0000 80 chrX:11190612-11190692 1.0000 80 chrII:161449-161529 1.0000 80 chrX:4635805-4635885 1.0000 80 chrIV:8112346-8112426 1.0000 80 chrII:6926203-6926283 1.0000 80 chrI:9543282-9543362 1.0000 80 chrII:66367-66447 1.0000 80 chrI:4745445-4745525 1.0000 80 chrIV:9107630-9107710 1.0000 80 chrIII:6710183-6710263 1.0000 80 chrX:2513881-2513961 1.0000 80 chrX:6686874-6686954 1.0000 80 chrIV:13413158-13413238 1.0000 80 chrIV:14496640-14496720 1.0000 80 chrI:14628121-14628201 1.0000 80 chrIII:7734300-7734380 1.0000 80 chrII:7812383-7812463 1.0000 80 chrIII:13713095-13713175 1.0000 80 chrX:5591954-5592034 1.0000 80 chrV:20061619-20061699 1.0000 80 chrX:5034132-5034212 1.0000 80 chrIV:13980225-13980305 1.0000 80 chrX:2713093-2713173 1.0000 80 chrX:2288182-2288262 1.0000 80 chrIV:3231894-3231974 1.0000 80 chrI:6079635-6079715 1.0000 80 chrX:17456969-17457049 1.0000 80 chrV:5580614-5580694 1.0000 80 chrX:5518552-5518632 1.0000 80 chrII:603137-603217 1.0000 80 chrI:5637900-5637980 1.0000 80 chrV:6204263-6204343 1.0000 80 chrIV:17269875-17269955 1.0000 80 chrI:1719231-1719311 1.0000 80 chrII:7631340-7631420 1.0000 80 chrI:5768769-5768849 1.0000 80 chrI:10262383-10262463 1.0000 80 chrIII:1591861-1591941 1.0000 80 chrI:11664907-11664987 1.0000 80 chrII:3810776-3810856 1.0000 80 chrII:10202446-10202526 1.0000 80 chrV:14002622-14002702 1.0000 80 chrX:11675792-11675872 1.0000 80 chrX:4809379-4809459 1.0000 80 chrX:6066851-6066931 1.0000 80 chrV:975363-975443 1.0000 80 chrII:601430-601510 1.0000 80 chrIV:12615493-12615573 1.0000 80 chrX:5210621-5210701 1.0000 80 chrV:13906233-13906313 1.0000 80 chrI:11554591-11554671 1.0000 80 chrII:4569994-4570074 1.0000 80 chrV:10717002-10717082 1.0000 80 chrX:3320250-3320330 1.0000 80 chrX:13519266-13519346 1.0000 80 chrI:1559181-1559261 1.0000 80 chrI:11169658-11169738 1.0000 80 chrII:159425-159505 1.0000 80 chrX:10394387-10394467 1.0000 80 chrX:5071245-5071325 1.0000 80 chrX:2046291-2046371 1.0000 80 chrX:10990579-10990659 1.0000 80 chrII:4672696-4672776 1.0000 80 chrX:954852-954932 1.0000 80 chrIV:3824876-3824956 1.0000 80 chrIV:7486361-7486441 1.0000 80 chrIII:6978992-6979072 1.0000 80 chrIV:2896477-2896557 1.0000 80 chrV:4810946-4811026 1.0000 80 chrIV:5507945-5508025 1.0000 80 chrX:6959805-6959885 1.0000 80 chrIV:7099602-7099682 1.0000 80 chrI:11131536-11131616 1.0000 80 chrX:2432684-2432764 1.0000 80 chrIV:16024278-16024358 1.0000 80 chrX:5360842-5360922 1.0000 80 chrIV:14356378-14356458 1.0000 80 chrX:4961727-4961807 1.0000 80 chrI:4941224-4941304 1.0000 80 chrIV:10817212-10817292 1.0000 80 chrIV:15984431-15984511 1.0000 80 chrX:7713046-7713126 1.0000 80 chrIV:13031037-13031117 1.0000 80 chrX:11662773-11662853 1.0000 80 chrIII:9703847-9703927 1.0000 80 chrII:2995179-2995259 1.0000 80 chrIV:9667276-9667356 1.0000 80 chrII:5512125-5512205 1.0000 80 chrIII:4502702-4502782 1.0000 80 chrI:8138725-8138805 1.0000 80 chrII:5461025-5461105 1.0000 80 chrV:265221-265301 1.0000 80 chrII:13195318-13195398 1.0000 80 chrI:2299687-2299767 1.0000 80 chrIII:8809697-8809777 1.0000 80 chrII:9619550-9619630 1.0000 80 chrX:6505170-6505250 1.0000 80 chrX:8136621-8136701 1.0000 80 chrII:5416395-5416475 1.0000 80 chrIV:16498119-16498199 1.0000 80 chrIV:6990103-6990183 1.0000 80 chrIV:372430-372510 1.0000 80 chrX:3472439-3472519 1.0000 80 chrII:6823351-6823431 1.0000 80 chrX:8286904-8286984 1.0000 80 chrX:10594069-10594149 1.0000 80 chrI:2703267-2703347 1.0000 80 chrIII:8901198-8901278 1.0000 80 chrV:14773252-14773332 1.0000 80 chrII:11041945-11042025 1.0000 80 chrIII:8556961-8557041 1.0000 80 chrIII:10783117-10783197 1.0000 80 chrIV:13206066-13206146 1.0000 80 chrX:8751033-8751113 1.0000 80 chrX:4214748-4214828 1.0000 80 chrII:6943824-6943904 1.0000 80 chrV:12041282-12041362 1.0000 80 chrII:301138-301218 1.0000 80 chrI:10539363-10539443 1.0000 80 chrIII:10869120-10869200 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_cog-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/cog-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.27 C 0.231 G 0.228 T 0.271 Background letter frequencies (from file dataset with add-one prior applied): A 0.27 C 0.231 G 0.228 T 0.271 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AGACGCAG MEME-1 width = 8 sites = 35 llr = 346 E-value = 5.5e-027 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGACGCAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A a:9:::9: pos.-specific C :::a:a:: probability G :91:9::a matrix T :1::1:1: bits 2.1 * * * 1.9 * * * 1.7 * *** * 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (14.2 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGACGCAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:4502702-4502782 26 1.24e-05 TGAGAGGTAG AGACGCAG GAAAATATGA chrIV:15984431-15984511 11 1.24e-05 AAATGACGAG AGACGCAG AGAAAAGGAA chrIV:16024278-16024358 65 1.24e-05 AGAGAGTGTG AGACGCAG AGTGGAGA chrIV:3824876-3824956 6 1.24e-05 CAAAG AGACGCAG ACATATGGTG chrII:601430-601510 34 1.24e-05 ACTACTAGCG AGACGCAG ACACATCAAG chrV:14002622-14002702 33 1.24e-05 AAAGACGAAG AGACGCAG TAAGTACGAA chrIII:1591861-1591941 37 1.24e-05 agatagagag agaCGCAG ACACTCGAAC chrIV:13413158-13413238 49 1.24e-05 CGCCTTCTGG AGACGCAG ACGCGCAAGC chrX:6686874-6686954 53 1.24e-05 TGAATCGAAG AGACGCAG ACTTGTAACC chrI:4745445-4745525 53 1.24e-05 AAGTGTGAAG AGACGCAG GCGTGTGAGC chrII:6926203-6926283 69 1.24e-05 ATGCTCCGTA AGACGCAG ACTT chrI:1651404-1651484 24 1.24e-05 agagagggag agaCGCAG ACACAAAGGA chrIII:2132183-2132263 35 1.24e-05 CCTAGAAACA AGACGCAG AGTGCATAAG chrV:20424386-20424466 24 1.24e-05 AATCTAGAAG AGACGCAG GGAAGAGGTC chrII:7364215-7364295 42 1.24e-05 ATACAATGTT AGACGCAG GCATATAGAC chrIII:4010304-4010384 71 1.24e-05 TCGGTGTAGG AGACGCAG AG chrI:4032604-4032684 50 1.24e-05 TGTCCTGTAG AGACGCAG ACGTAAAAAG chrX:5140256-5140336 2 1.24e-05 A AGACGCAG ACAACCGGGG chrIV:5600437-5600517 23 1.24e-05 CGAGATGAAG AGACGCAG AAACAACGCC chrII:9491217-9491297 3 1.24e-05 tg agACGCAG AGATTACTGC chrI:2829224-2829304 47 1.24e-05 GGATTCGGAG AGACGCAG ATGGTGTTCG chrIII:8901198-8901278 18 2.72e-05 GAACGGTGAG ATACGCAG AAACATGTGT chrX:7713046-7713126 66 2.72e-05 ATTGTTGAAG ATACGCAG ATGTGCA chrIV:5507945-5508025 33 2.72e-05 GAAGAATAAG ATACGCAG ACACATCCAC chrX:6410533-6410613 40 2.72e-05 TTTCCTCAGA ATACGCAG ACTTCTGTGA chrX:7232663-7232743 9 2.72e-05 AGAGTGAG ATACGCAG ACACATTTGG chrIV:13206066-13206146 52 3.97e-05 CAATTCTTTG AGACGCTG CCGCTCGAGG chrX:5210621-5210701 16 3.97e-05 TTTGTGAAGA AGACGCTG CCCGCCTTCT chrX:10429355-10429435 34 3.97e-05 AGAATGAAGA AGACGCTG GTGGAGAAGA chrX:4214748-4214828 59 5.03e-05 AGAGGCGAAG AGGCGCAG ACGGCAAAAC chrX:8286904-8286984 7 5.03e-05 CCTCAA AGGCGCAG GCAATTTAGG chrIII:6537418-6537498 51 6.50e-05 CGATGCATGG AGACTcag aaacagagag chrII:10065585-10065665 5 6.50e-05 GAAG AGACTCAG ACACGAAAAA chrX:13420007-13420087 25 7.56e-05 GCCGTTGTGG GGACGCAG CCATAGTGCA chrI:5768769-5768849 21 9.03e-05 TAAAATGGAG AGACACAG TGAAAAGGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:4502702-4502782 1.2e-05 25_[+1]_47 chrIV:15984431-15984511 1.2e-05 10_[+1]_62 chrIV:16024278-16024358 1.2e-05 64_[+1]_8 chrIV:3824876-3824956 1.2e-05 5_[+1]_67 chrII:601430-601510 1.2e-05 33_[+1]_39 chrV:14002622-14002702 1.2e-05 32_[+1]_40 chrIII:1591861-1591941 1.2e-05 36_[+1]_36 chrIV:13413158-13413238 1.2e-05 48_[+1]_24 chrX:6686874-6686954 1.2e-05 52_[+1]_20 chrI:4745445-4745525 1.2e-05 52_[+1]_20 chrII:6926203-6926283 1.2e-05 68_[+1]_4 chrI:1651404-1651484 1.2e-05 23_[+1]_49 chrIII:2132183-2132263 1.2e-05 34_[+1]_38 chrV:20424386-20424466 1.2e-05 23_[+1]_49 chrII:7364215-7364295 1.2e-05 41_[+1]_31 chrIII:4010304-4010384 1.2e-05 70_[+1]_2 chrI:4032604-4032684 1.2e-05 49_[+1]_23 chrX:5140256-5140336 1.2e-05 1_[+1]_71 chrIV:5600437-5600517 1.2e-05 22_[+1]_50 chrII:9491217-9491297 1.2e-05 2_[+1]_70 chrI:2829224-2829304 1.2e-05 46_[+1]_26 chrIII:8901198-8901278 2.7e-05 17_[+1]_55 chrX:7713046-7713126 2.7e-05 65_[+1]_7 chrIV:5507945-5508025 2.7e-05 32_[+1]_40 chrX:6410533-6410613 2.7e-05 39_[+1]_33 chrX:7232663-7232743 2.7e-05 8_[+1]_64 chrIV:13206066-13206146 4e-05 51_[+1]_21 chrX:5210621-5210701 4e-05 15_[+1]_57 chrX:10429355-10429435 4e-05 33_[+1]_39 chrX:4214748-4214828 5e-05 58_[+1]_14 chrX:8286904-8286984 5e-05 6_[+1]_66 chrIII:6537418-6537498 6.5e-05 50_[+1]_22 chrII:10065585-10065665 6.5e-05 4_[+1]_68 chrX:13420007-13420087 7.6e-05 24_[+1]_48 chrI:5768769-5768849 9e-05 20_[+1]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGACGCAG width=8 seqs=35 chrIII:4502702-4502782 ( 26) AGACGCAG 1 chrIV:15984431-15984511 ( 11) AGACGCAG 1 chrIV:16024278-16024358 ( 65) AGACGCAG 1 chrIV:3824876-3824956 ( 6) AGACGCAG 1 chrII:601430-601510 ( 34) AGACGCAG 1 chrV:14002622-14002702 ( 33) AGACGCAG 1 chrIII:1591861-1591941 ( 37) AGACGCAG 1 chrIV:13413158-13413238 ( 49) AGACGCAG 1 chrX:6686874-6686954 ( 53) AGACGCAG 1 chrI:4745445-4745525 ( 53) AGACGCAG 1 chrII:6926203-6926283 ( 69) AGACGCAG 1 chrI:1651404-1651484 ( 24) AGACGCAG 1 chrIII:2132183-2132263 ( 35) AGACGCAG 1 chrV:20424386-20424466 ( 24) AGACGCAG 1 chrII:7364215-7364295 ( 42) AGACGCAG 1 chrIII:4010304-4010384 ( 71) AGACGCAG 1 chrI:4032604-4032684 ( 50) AGACGCAG 1 chrX:5140256-5140336 ( 2) AGACGCAG 1 chrIV:5600437-5600517 ( 23) AGACGCAG 1 chrII:9491217-9491297 ( 3) AGACGCAG 1 chrI:2829224-2829304 ( 47) AGACGCAG 1 chrIII:8901198-8901278 ( 18) ATACGCAG 1 chrX:7713046-7713126 ( 66) ATACGCAG 1 chrIV:5507945-5508025 ( 33) ATACGCAG 1 chrX:6410533-6410613 ( 40) ATACGCAG 1 chrX:7232663-7232743 ( 9) ATACGCAG 1 chrIV:13206066-13206146 ( 52) AGACGCTG 1 chrX:5210621-5210701 ( 16) AGACGCTG 1 chrX:10429355-10429435 ( 34) AGACGCTG 1 chrX:4214748-4214828 ( 59) AGGCGCAG 1 chrX:8286904-8286984 ( 7) AGGCGCAG 1 chrIII:6537418-6537498 ( 51) AGACTCAG 1 chrII:10065585-10065665 ( 5) AGACTCAG 1 chrX:13420007-13420087 ( 25) GGACGCAG 1 chrI:5768769-5768849 ( 21) AGACACAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4104 E= 5.5e-027 185 -1177 -299 -1177 -1177 -1177 191 -92 180 -1177 -199 -1177 -1177 211 -1177 -1177 -324 -1177 201 -225 -1177 211 -1177 -1177 176 -1177 -1177 -166 -1177 -1177 214 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 5.5e-027 0.971429 0.000000 0.028571 0.000000 0.000000 0.000000 0.857143 0.142857 0.942857 0.000000 0.057143 0.000000 0.000000 1.000000 0.000000 0.000000 0.028571 0.000000 0.914286 0.057143 0.000000 1.000000 0.000000 0.000000 0.914286 0.000000 0.000000 0.085714 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-1 regular expression -------------------------------------------------------------------------------- AGACGCAG -------------------------------------------------------------------------------- Time 9.03 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCTCTCT MEME-2 width = 8 sites = 66 llr = 507 E-value = 3.4e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :2::::2: pos.-specific C 9:8:a:71 probability G 111:::2: matrix T :71a:a:9 bits 2.1 * 1.9 *** 1.7 *** 1.5 * *** Relative 1.3 * *** * Entropy 1.1 * *** * (11.1 bits) 0.9 * **** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCTCTCT consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:16498119-16498199 53 1.54e-05 tctttctcct ctctctct ctcttttctc chrIV:13031037-13031117 66 1.54e-05 AGCATTGGCA CTCTCTCT TCTCTCT chrIV:16024278-16024358 16 1.54e-05 tatttctcca ctctctct ACACACTTTG chrI:11131536-11131616 50 1.54e-05 GTCTCTCACT CTCTCTCT TTCTATGCTG chrI:11169658-11169738 18 1.54e-05 ctctctttct ctctctct catctAAGAG chrI:10262383-10262463 67 1.54e-05 TCTCTGTGGT CTCTCTCT CCGCAT chrI:7715829-7715909 64 1.54e-05 GCTGGAGAGA CTCTCTCT GTGTGTCAT chrI:13528207-13528287 69 1.54e-05 GTCTCTTACT CTCTCTCT GCTG chrX:13226887-13226967 60 1.54e-05 ctctatctct ctctctct ccctcactat chrV:18589673-18589753 69 1.54e-05 CACCTCCCTA CTCTCTCT ACTT chrIII:5668097-5668177 42 1.54e-05 TCAACATCTG CTCTCTCT CATGTTTTCC chrI:1559181-1559261 73 3.07e-05 GGAAGACACA CActctct chrII:603137-603217 42 3.07e-05 AACTGTCTGT CACTCTCT CATTTTCTTT chrIII:13713095-13713175 3 3.07e-05 AC CACTCTCT ACGCCGTCGT chrIV:8334111-8334191 10 3.07e-05 CCACTCTCT CACTCTCT ATCTCTTCCA chrI:14867696-14867776 3 3.07e-05 GC CACTCTCT CATACCCCTC chrII:6522793-6522873 13 3.07e-05 CATCTTCTCT CACTCTCT GTTCAGGCGG chrII:15255909-15255989 36 3.07e-05 ATGGTGACCA CACTCTCT CCACTCCCAT chrIII:13182125-13182205 4 3.07e-05 tct cactctct ccctctctca chrX:13519266-13519346 15 4.58e-05 CTCAAGTCAG CTCTCTGT CATCTCTTCT chrII:7631340-7631420 63 4.58e-05 GCGTCTGGTA CTCTCTGT GATTATCATG chrII:161449-161529 43 4.58e-05 AGCTGTGATG CTCTCTGT GCTATTACAC chrIII:8556961-8557041 1 6.38e-05 . CTCTCTAT CCATCTCTTC chrII:159425-159505 32 6.38e-05 CCGTTGTCTT CTCTCTAT CGATTCGATT chrX:11666716-11666796 65 6.38e-05 TGTGTCTAAA CTCTCTAT ACTACTAT chrI:8783762-8783842 27 6.38e-05 ATCCGTTCAC CTCTCTAT GTGCAGGTGT chrX:5360842-5360922 5 7.67e-05 AGGA CGCTCTCT TTTGCATGTC chrX:15347834-15347914 27 7.67e-05 TAAACCGAGG CGCTCTCT CGGCGTTCCA chrI:10539363-10539443 59 9.18e-05 ACGTCTCTCA GTCTCTCT CAATCGTTCA chrIV:6648791-6648871 38 9.18e-05 TTTTCTCTGT GTCTCTCT GATTCACTTG chrI:9525235-9525315 33 9.18e-05 CATTCTCTGT GTCTCTCT AATAATTGAA chrII:301138-301218 52 1.38e-04 GAACAATTTT CTGTCTCT TCCATATCCC chrX:8751033-8751113 46 1.38e-04 TCTGCTGCCT CTTTCTCT CGCGTAGTCT chrI:2299687-2299767 50 1.38e-04 TATGCAGAGG CTGTCTCT TTTGCTCTCG chrIV:9667276-9667356 24 1.38e-04 CGGGGGAATA CTCTCTCC TCCAGACGGG chrII:66367-66447 11 1.38e-04 GTCTACCATT CTTTCTCT AAAATCTCTT chrI:4320822-4320902 51 1.38e-04 ACACATAGTA CTCTCTCC CCTTCTTATT chrII:3897083-3897163 71 1.38e-04 CACGTTTCTT CTTTCTCT AT chrX:8136621-8136701 67 1.53e-04 AATGCATATT CACTCTGT TGAGCG chrX:8286904-8286984 63 1.71e-04 GGGAGGTCTC CACTCTAT tgagtgagag chrII:5092451-5092531 18 1.71e-04 GTCATTCGCG CACTCTAT CTTTGTCTTG chrIV:12158044-12158124 8 1.71e-04 ATCTCCA CACTCTAT GCCTCTTGAC chrII:3810776-3810856 28 1.89e-04 CTCCAATGCT CTATCTCT CGTCCAGTTT chrV:6797047-6797127 13 1.89e-04 ACACTCCCTC CTATCTCT CCACATTCTC chrV:11281506-11281586 12 1.89e-04 GGTTTTTGAT CTATCTCT CGTTTACCAC chrI:6175081-6175161 65 2.17e-04 GGAGGTACTC GACTCTCT AGAGCTCT chrIV:15573944-15574024 15 2.17e-04 ATGTTTCCGT CGCTCTGT TCCATTTGAT chrV:975363-975443 25 2.76e-04 AGCGCGTCTG CACTCTCC GCACTTGCCA chrV:6684708-6684788 44 2.76e-04 AACTAAATGC CTCTCTCG TGTAATTACA chrI:3842610-3842690 50 2.76e-04 GATTTGTGTG CTCTCTCG TCCTCCCCAG chrII:6836380-6836460 5 2.76e-04 ATTT CATTCTCT CACAGTTTAG chrIV:7486361-7486441 25 3.06e-04 GCGACACAGA GTCTCTGT GTCTCAAATT chrIV:13980225-13980305 70 3.06e-04 GATGCAAGTT CGCTCTAT CGT chrX:5816500-5816580 49 3.06e-04 GTCGTGCCAA GTCTCTGT GAAACGCAAT chrII:10065585-10065665 72 3.06e-04 CCCTCCTCCC GTCTCTGT G chrII:2995179-2995259 66 3.52e-04 CTCTTCTCAT CTTTCTGT TGGTATC chrX:5071245-5071325 4 3.52e-04 CTA CTGTCTGT ACATCCACAT chrI:9545229-9545309 13 3.52e-04 GGGTCAACAC CTGTCTGT AATCGAGACT chrII:4693335-4693415 28 3.69e-04 TCCCGTCTGC GTCTCTAT ACCATGCCAC chrX:2288182-2288262 13 4.23e-04 TAGTACAGTT CTGTCTAT GTCTCTACTA chrII:7623576-7623656 72 4.23e-04 TATCTCCGCA CTGTCTAT C chrII:6943824-6943904 50 4.75e-04 atccgtcgtt cgctctcc gccgtctcgt chrV:11674041-11674121 6 4.75e-04 ACGGT CGCTCTCC TCTGACCTTC chrIV:3521115-3521195 52 4.75e-04 TCTACTCGTC CGTTCTCT GATTCCTCGT chrX:17456969-17457049 56 4.93e-04 CGTGTCTGTG CTCTCTTT GGGGATCTCA chrII:5461025-5461105 65 5.85e-04 CCCGTTCCCT CTTTCTCC TCTTGCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:16498119-16498199 1.5e-05 52_[+2]_20 chrIV:13031037-13031117 1.5e-05 65_[+2]_7 chrIV:16024278-16024358 1.5e-05 15_[+2]_57 chrI:11131536-11131616 1.5e-05 49_[+2]_23 chrI:11169658-11169738 1.5e-05 17_[+2]_55 chrI:10262383-10262463 1.5e-05 66_[+2]_6 chrI:7715829-7715909 1.5e-05 63_[+2]_9 chrI:13528207-13528287 1.5e-05 68_[+2]_4 chrX:13226887-13226967 1.5e-05 59_[+2]_13 chrV:18589673-18589753 1.5e-05 68_[+2]_4 chrIII:5668097-5668177 1.5e-05 41_[+2]_31 chrI:1559181-1559261 3.1e-05 72_[+2] chrII:603137-603217 3.1e-05 41_[+2]_31 chrIII:13713095-13713175 3.1e-05 2_[+2]_70 chrIV:8334111-8334191 3.1e-05 9_[+2]_63 chrI:14867696-14867776 3.1e-05 2_[+2]_70 chrII:6522793-6522873 3.1e-05 12_[+2]_60 chrII:15255909-15255989 3.1e-05 35_[+2]_37 chrIII:13182125-13182205 3.1e-05 3_[+2]_69 chrX:13519266-13519346 4.6e-05 14_[+2]_58 chrII:7631340-7631420 4.6e-05 62_[+2]_10 chrII:161449-161529 4.6e-05 42_[+2]_30 chrIII:8556961-8557041 6.4e-05 [+2]_72 chrII:159425-159505 6.4e-05 31_[+2]_41 chrX:11666716-11666796 6.4e-05 64_[+2]_8 chrI:8783762-8783842 6.4e-05 26_[+2]_46 chrX:5360842-5360922 7.7e-05 4_[+2]_68 chrX:15347834-15347914 7.7e-05 26_[+2]_46 chrI:10539363-10539443 9.2e-05 58_[+2]_14 chrIV:6648791-6648871 9.2e-05 37_[+2]_35 chrI:9525235-9525315 9.2e-05 32_[+2]_40 chrII:301138-301218 0.00014 51_[+2]_21 chrX:8751033-8751113 0.00014 45_[+2]_27 chrI:2299687-2299767 0.00014 49_[+2]_23 chrIV:9667276-9667356 0.00014 23_[+2]_49 chrII:66367-66447 0.00014 10_[+2]_62 chrI:4320822-4320902 0.00014 50_[+2]_22 chrII:3897083-3897163 0.00014 70_[+2]_2 chrX:8136621-8136701 0.00015 66_[+2]_6 chrX:8286904-8286984 0.00017 62_[+2]_10 chrII:5092451-5092531 0.00017 17_[+2]_55 chrIV:12158044-12158124 0.00017 7_[+2]_65 chrII:3810776-3810856 0.00019 27_[+2]_45 chrV:6797047-6797127 0.00019 12_[+2]_60 chrV:11281506-11281586 0.00019 11_[+2]_61 chrI:6175081-6175161 0.00022 64_[+2]_8 chrIV:15573944-15574024 0.00022 14_[+2]_58 chrV:975363-975443 0.00028 24_[+2]_48 chrV:6684708-6684788 0.00028 43_[+2]_29 chrI:3842610-3842690 0.00028 49_[+2]_23 chrII:6836380-6836460 0.00028 4_[+2]_68 chrIV:7486361-7486441 0.00031 24_[+2]_48 chrIV:13980225-13980305 0.00031 69_[+2]_3 chrX:5816500-5816580 0.00031 48_[+2]_24 chrII:10065585-10065665 0.00031 71_[+2]_1 chrII:2995179-2995259 0.00035 65_[+2]_7 chrX:5071245-5071325 0.00035 3_[+2]_69 chrI:9545229-9545309 0.00035 12_[+2]_60 chrII:4693335-4693415 0.00037 27_[+2]_45 chrX:2288182-2288262 0.00042 12_[+2]_60 chrII:7623576-7623656 0.00042 71_[+2]_1 chrII:6943824-6943904 0.00048 49_[+2]_23 chrV:11674041-11674121 0.00048 5_[+2]_67 chrIV:3521115-3521195 0.00048 51_[+2]_21 chrX:17456969-17457049 0.00049 55_[+2]_17 chrII:5461025-5461105 0.00058 64_[+2]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCTCTCT width=8 seqs=66 chrIV:16498119-16498199 ( 53) CTCTCTCT 1 chrIV:13031037-13031117 ( 66) CTCTCTCT 1 chrIV:16024278-16024358 ( 16) CTCTCTCT 1 chrI:11131536-11131616 ( 50) CTCTCTCT 1 chrI:11169658-11169738 ( 18) CTCTCTCT 1 chrI:10262383-10262463 ( 67) CTCTCTCT 1 chrI:7715829-7715909 ( 64) CTCTCTCT 1 chrI:13528207-13528287 ( 69) CTCTCTCT 1 chrX:13226887-13226967 ( 60) CTCTCTCT 1 chrV:18589673-18589753 ( 69) CTCTCTCT 1 chrIII:5668097-5668177 ( 42) CTCTCTCT 1 chrI:1559181-1559261 ( 73) CACTCTCT 1 chrII:603137-603217 ( 42) CACTCTCT 1 chrIII:13713095-13713175 ( 3) CACTCTCT 1 chrIV:8334111-8334191 ( 10) CACTCTCT 1 chrI:14867696-14867776 ( 3) CACTCTCT 1 chrII:6522793-6522873 ( 13) CACTCTCT 1 chrII:15255909-15255989 ( 36) CACTCTCT 1 chrIII:13182125-13182205 ( 4) CACTCTCT 1 chrX:13519266-13519346 ( 15) CTCTCTGT 1 chrII:7631340-7631420 ( 63) CTCTCTGT 1 chrII:161449-161529 ( 43) CTCTCTGT 1 chrIII:8556961-8557041 ( 1) CTCTCTAT 1 chrII:159425-159505 ( 32) CTCTCTAT 1 chrX:11666716-11666796 ( 65) CTCTCTAT 1 chrI:8783762-8783842 ( 27) CTCTCTAT 1 chrX:5360842-5360922 ( 5) CGCTCTCT 1 chrX:15347834-15347914 ( 27) CGCTCTCT 1 chrI:10539363-10539443 ( 59) GTCTCTCT 1 chrIV:6648791-6648871 ( 38) GTCTCTCT 1 chrI:9525235-9525315 ( 33) GTCTCTCT 1 chrII:301138-301218 ( 52) CTGTCTCT 1 chrX:8751033-8751113 ( 46) CTTTCTCT 1 chrI:2299687-2299767 ( 50) CTGTCTCT 1 chrIV:9667276-9667356 ( 24) CTCTCTCC 1 chrII:66367-66447 ( 11) CTTTCTCT 1 chrI:4320822-4320902 ( 51) CTCTCTCC 1 chrII:3897083-3897163 ( 71) CTTTCTCT 1 chrX:8136621-8136701 ( 67) CACTCTGT 1 chrX:8286904-8286984 ( 63) CACTCTAT 1 chrII:5092451-5092531 ( 18) CACTCTAT 1 chrIV:12158044-12158124 ( 8) CACTCTAT 1 chrII:3810776-3810856 ( 28) CTATCTCT 1 chrV:6797047-6797127 ( 13) CTATCTCT 1 chrV:11281506-11281586 ( 12) CTATCTCT 1 chrI:6175081-6175161 ( 65) GACTCTCT 1 chrIV:15573944-15574024 ( 15) CGCTCTGT 1 chrV:975363-975443 ( 25) CACTCTCC 1 chrV:6684708-6684788 ( 44) CTCTCTCG 1 chrI:3842610-3842690 ( 50) CTCTCTCG 1 chrII:6836380-6836460 ( 5) CATTCTCT 1 chrIV:7486361-7486441 ( 25) GTCTCTGT 1 chrIV:13980225-13980305 ( 70) CGCTCTAT 1 chrX:5816500-5816580 ( 49) GTCTCTGT 1 chrII:10065585-10065665 ( 72) GTCTCTGT 1 chrII:2995179-2995259 ( 66) CTTTCTGT 1 chrX:5071245-5071325 ( 4) CTGTCTGT 1 chrI:9545229-9545309 ( 13) CTGTCTGT 1 chrII:4693335-4693415 ( 28) GTCTCTAT 1 chrX:2288182-2288262 ( 13) CTGTCTAT 1 chrII:7623576-7623656 ( 72) CTGTCTAT 1 chrII:6943824-6943904 ( 50) CGCTCTCC 1 chrV:11674041-11674121 ( 6) CGCTCTCC 1 chrIV:3521115-3521195 ( 52) CGTTCTCT 1 chrX:17456969-17457049 ( 56) CTCTCTTT 1 chrII:5461025-5461105 ( 65) CTTTCTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.86128 E= 3.4e-016 -1269 193 -91 -1269 -25 -1269 -110 130 -257 171 -132 -135 -1269 -1269 -1269 188 -1269 211 -1269 -1269 -1269 -1269 -1269 188 -70 150 -45 -416 -1269 -134 -291 170 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 66 E= 3.4e-016 0.000000 0.878788 0.121212 0.000000 0.227273 0.000000 0.106061 0.666667 0.045455 0.757576 0.090909 0.106061 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.166667 0.651515 0.166667 0.015152 0.000000 0.090909 0.030303 0.878788 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCTCTCT MEME-2 regular expression -------------------------------------------------------------------------------- C[TA]CTCTCT -------------------------------------------------------------------------------- Time 14.44 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCGTCT MEME-3 width = 8 sites = 22 llr = 237 E-value = 1.1e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a::9::a: probability G ::a:a::: matrix T :a:1:a:a bits 2.1 * * * 1.9 *** **** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (15.5 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGCGTCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:11131536-11131616 36 1.28e-05 TCCCGCACAC CTGCGTCT CTCACTCTCT chrI:11169658-11169738 2 1.28e-05 t ctgcgtct ctctttctct chrI:1559181-1559261 15 1.28e-05 GGACACAGTT CTGCGTCT CGCCGGTCAT chrII:3810776-3810856 4 1.28e-05 AGT CTGCGTCT CTTCGTCTCC chrI:4320822-4320902 5 1.28e-05 ATTG CTGCGTCT CACTTCTCGA chrII:7623576-7623656 39 1.28e-05 CCGAGACATT CTGCGTCT CTACAACTCA chrII:3897083-3897163 36 1.28e-05 CTCTAACTAT CTGCGTCT AGTGCCCTTT chrII:11305814-11305894 16 1.28e-05 GGTCGAATCT CTGCGTCT CGCCAATTCA chrII:4693335-4693415 67 1.28e-05 ATTACACCAC CTGCGTCT CTAGGT chrI:13528207-13528287 55 1.28e-05 ATTTTGCTGT CTGCGTCT CTTACTCTCT chrIV:3521115-3521195 32 1.28e-05 TTGTACGCCT CTGCGTCT CCTCTACTCG chrII:15255909-15255989 15 1.28e-05 GTGTACATGT CTGCGTCT CTCATGGTGA chrI:14070932-14071012 63 1.28e-05 CTTTAAATGT CTGCGTCT CACTATCCCT chrIII:13182125-13182205 40 1.28e-05 ctcGAAATCT CTGCGTCT CTATTAACAA chrIV:12686014-12686094 39 1.28e-05 ATTTGACAAT CTGCGTCT CTTCAATTCC chrIV:14032871-14032951 60 1.28e-05 AGACAAGTGT CTGCGTCT CAAGGGTCAA chrV:18589673-18589753 47 1.28e-05 CCCTCCCGGT CTGCGTCT CTCCCACCTC chrV:2278673-2278753 73 1.28e-05 GTTCGTGTAT CTGCGTCT chrIV:15107317-15107397 48 1.28e-05 GGCCTCTTCT CTGCGTCT CTCATGCGTT chrII:6823351-6823431 26 2.77e-05 CCAAATAACT CTGTGTCT TTTTCTCTGG chrIII:13713095-13713175 26 2.77e-05 GTCGTGCTCT CTGTGTCT CGCCCGACTA chrX:5591954-5592034 15 4.26e-05 ACCCGATTGT ATGCGTCT CTTCGAATCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:11131536-11131616 1.3e-05 35_[+3]_37 chrI:11169658-11169738 1.3e-05 1_[+3]_71 chrI:1559181-1559261 1.3e-05 14_[+3]_58 chrII:3810776-3810856 1.3e-05 3_[+3]_69 chrI:4320822-4320902 1.3e-05 4_[+3]_68 chrII:7623576-7623656 1.3e-05 38_[+3]_34 chrII:3897083-3897163 1.3e-05 35_[+3]_37 chrII:11305814-11305894 1.3e-05 15_[+3]_57 chrII:4693335-4693415 1.3e-05 66_[+3]_6 chrI:13528207-13528287 1.3e-05 54_[+3]_18 chrIV:3521115-3521195 1.3e-05 31_[+3]_41 chrII:15255909-15255989 1.3e-05 14_[+3]_58 chrI:14070932-14071012 1.3e-05 62_[+3]_10 chrIII:13182125-13182205 1.3e-05 39_[+3]_33 chrIV:12686014-12686094 1.3e-05 38_[+3]_34 chrIV:14032871-14032951 1.3e-05 59_[+3]_13 chrV:18589673-18589753 1.3e-05 46_[+3]_26 chrV:2278673-2278753 1.3e-05 72_[+3] chrIV:15107317-15107397 1.3e-05 47_[+3]_25 chrII:6823351-6823431 2.8e-05 25_[+3]_47 chrIII:13713095-13713175 2.8e-05 25_[+3]_47 chrX:5591954-5592034 4.3e-05 14_[+3]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCGTCT width=8 seqs=22 chrI:11131536-11131616 ( 36) CTGCGTCT 1 chrI:11169658-11169738 ( 2) CTGCGTCT 1 chrI:1559181-1559261 ( 15) CTGCGTCT 1 chrII:3810776-3810856 ( 4) CTGCGTCT 1 chrI:4320822-4320902 ( 5) CTGCGTCT 1 chrII:7623576-7623656 ( 39) CTGCGTCT 1 chrII:3897083-3897163 ( 36) CTGCGTCT 1 chrII:11305814-11305894 ( 16) CTGCGTCT 1 chrII:4693335-4693415 ( 67) CTGCGTCT 1 chrI:13528207-13528287 ( 55) CTGCGTCT 1 chrIV:3521115-3521195 ( 32) CTGCGTCT 1 chrII:15255909-15255989 ( 15) CTGCGTCT 1 chrI:14070932-14071012 ( 63) CTGCGTCT 1 chrIII:13182125-13182205 ( 40) CTGCGTCT 1 chrIV:12686014-12686094 ( 39) CTGCGTCT 1 chrIV:14032871-14032951 ( 60) CTGCGTCT 1 chrV:18589673-18589753 ( 47) CTGCGTCT 1 chrV:2278673-2278753 ( 73) CTGCGTCT 1 chrIV:15107317-15107397 ( 48) CTGCGTCT 1 chrII:6823351-6823431 ( 26) CTGTGTCT 1 chrIII:13713095-13713175 ( 26) CTGTGTCT 1 chrX:5591954-5592034 ( 15) ATGCGTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.24634 E= 1.1e-016 -257 205 -1110 -1110 -1110 -1110 -1110 188 -1110 -1110 214 -1110 -1110 198 -1110 -158 -1110 -1110 214 -1110 -1110 -1110 -1110 188 -1110 211 -1110 -1110 -1110 -1110 -1110 188 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 1.1e-016 0.045455 0.954545 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.909091 0.000000 0.090909 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-3 regular expression -------------------------------------------------------------------------------- CTGCGTCT -------------------------------------------------------------------------------- Time 17.97 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGAGAGA MEME-4 width = 8 sites = 39 llr = 337 E-value = 1.9e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGAGAGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 291a18:9 pos.-specific C ::1::::: probability G 818:91a: matrix T :::::::1 bits 2.1 * 1.9 ** * 1.7 ** * 1.5 * ** ** Relative 1.3 ** ***** Entropy 1.1 ******** (12.5 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGAGAGA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:10594069-10594149 63 1.44e-05 GCAGAAAAGG GAGAGAGA GTTATAGGAT chrIV:3824876-3824956 64 1.44e-05 GTGTgaggga gagagaga gaagagaga chrIV:12615493-12615573 69 1.44e-05 cagagagaga gagagaga gaga chrI:5768769-5768849 46 1.44e-05 GTCAAAAGGT GAGAGAGA TACCGAGTGT chrIII:6537418-6537498 64 1.44e-05 CTcagaaaca gagagaga aagagagaa chrI:1651404-1651484 9 1.44e-05 ACCCCAAa gagagaga gagggagaga chrII:9308856-9308936 23 1.44e-05 Tagggaaaga gagagaga gaggagaTGG chrIII:2126090-2126170 63 1.44e-05 CCGGCGGAGG GAGAGAGA GGGAGACAGT chrIV:12634028-12634108 23 1.44e-05 CTGGCCGTAA GAGAGAGA GTAAGAGAAT chrIV:14032871-14032951 45 1.44e-05 AGGGTGAACA GAGAGAGA CAAGTGTCTG chrV:6797047-6797127 53 1.44e-05 ATGCGAGGCT GAGAGAGA ATGGAACGGG chrI:10585425-10585505 60 1.44e-05 AGGTGAACAT gagagaga cagtgagagg chrI:11169658-11169738 31 3.14e-05 tctctcatct AAGAGAGA TAGAGACAGA chrV:6204263-6204343 10 3.14e-05 CTTCCAACG AAGAGAGA TCACTGGTGC chrI:6079635-6079715 57 3.14e-05 AGAAAATGAA AAGAGAGA AACGATGGTG chrIV:6474940-6475020 46 3.14e-05 GAAGAGATAT AAGAGAGA AAAAGAAGGA chrV:11083946-11084026 53 3.14e-05 GGAGGCACCG AAGAGAGA AGCAATCTGT chrIV:5169577-5169657 44 3.14e-05 GTGTAAGATG AAGAGAGA CGAGAGAAAC chrX:8286904-8286984 49 4.35e-05 AGACCAAAGT GAGAGGGA GGTCTCCACT chrX:2432684-2432764 33 4.35e-05 AGTGAATGAG GAGAGGGA AAAGATAGAG chrX:871188-871268 15 4.35e-05 TGGTGGGGTT GAGAGGGA AAAGAGAGGT chrX:3472439-3472519 7 5.56e-05 TAAACG GGGAGAGA CCAGGTGAGA chrX:9899854-9899934 22 5.56e-05 TCGGAAAGCA GGGAGAGA CTAGAGGCGA chrX:9102348-9102428 45 7.02e-05 TGAGAGTGGG GACAGAGA CTGTCGTGTC chrIII:11942782-11942862 38 7.02e-05 AAAAGAGCCC GACAGAGA GTTCTCAGAA chrIII:6948032-6948112 56 7.02e-05 GTCACACACA GACAGAGA GAAAAAGAAA chrII:7623576-7623656 14 8.72e-05 aagaggaata gaaagaga GCAACTTCCG chrX:6729761-6729841 12 8.72e-05 CCGAGAGGTG GAAAGAGA AATGTAAATG chrV:20424386-20424466 69 8.72e-05 CACTCATTGA GAAAGAGA AGAA chrIII:1591861-1591941 15 1.02e-04 atagggaaat gagagagt gcagagatag chrIV:5600437-5600517 2 1.02e-04 T GAGAGAGT GTTCGAGATG chrI:7711796-7711876 48 1.19e-04 TAGTAAGCGa gagaaaga ggcacagaat chrI:14070932-14071012 22 1.19e-04 CGGACGAATA GAGAAAGA AAAGGCGCAT chrII:5416395-5416475 21 1.79e-04 TTCTATTGAT GAGAGTGA ACCCTAAGGC chrX:12183313-12183393 6 1.79e-04 GATAA AACAGAGA AACTGGAGAA chrI:4032604-4032684 63 1.99e-04 CGCAGACGTA AAAAGAGA ACGCAAGGGT chrV:975363-975443 73 2.09e-04 AACACCATCT GGGAGGGA chrIII:3543254-3543334 43 2.09e-04 CTGGGAACAA GGGAGGGA GGAAGAGGAA chrIV:16024278-16024358 54 2.26e-04 AACGTGCGGG AAGAGAGT GTGAGACGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:10594069-10594149 1.4e-05 62_[+4]_10 chrIV:3824876-3824956 1.4e-05 63_[+4]_9 chrIV:12615493-12615573 1.4e-05 68_[+4]_4 chrI:5768769-5768849 1.4e-05 45_[+4]_27 chrIII:6537418-6537498 1.4e-05 63_[+4]_9 chrI:1651404-1651484 1.4e-05 8_[+4]_64 chrII:9308856-9308936 1.4e-05 22_[+4]_50 chrIII:2126090-2126170 1.4e-05 62_[+4]_10 chrIV:12634028-12634108 1.4e-05 22_[+4]_50 chrIV:14032871-14032951 1.4e-05 44_[+4]_28 chrV:6797047-6797127 1.4e-05 52_[+4]_20 chrI:10585425-10585505 1.4e-05 59_[+4]_13 chrI:11169658-11169738 3.1e-05 30_[+4]_42 chrV:6204263-6204343 3.1e-05 9_[+4]_63 chrI:6079635-6079715 3.1e-05 56_[+4]_16 chrIV:6474940-6475020 3.1e-05 45_[+4]_27 chrV:11083946-11084026 3.1e-05 52_[+4]_20 chrIV:5169577-5169657 3.1e-05 43_[+4]_29 chrX:8286904-8286984 4.3e-05 48_[+4]_24 chrX:2432684-2432764 4.3e-05 32_[+4]_40 chrX:871188-871268 4.3e-05 14_[+4]_58 chrX:3472439-3472519 5.6e-05 6_[+4]_66 chrX:9899854-9899934 5.6e-05 21_[+4]_51 chrX:9102348-9102428 7e-05 44_[+4]_28 chrIII:11942782-11942862 7e-05 37_[+4]_35 chrIII:6948032-6948112 7e-05 55_[+4]_17 chrII:7623576-7623656 8.7e-05 13_[+4]_59 chrX:6729761-6729841 8.7e-05 11_[+4]_61 chrV:20424386-20424466 8.7e-05 68_[+4]_4 chrIII:1591861-1591941 0.0001 14_[+4]_58 chrIV:5600437-5600517 0.0001 1_[+4]_71 chrI:7711796-7711876 0.00012 47_[+4]_25 chrI:14070932-14071012 0.00012 21_[+4]_51 chrII:5416395-5416475 0.00018 20_[+4]_52 chrX:12183313-12183393 0.00018 5_[+4]_67 chrI:4032604-4032684 0.0002 62_[+4]_10 chrV:975363-975443 0.00021 72_[+4] chrIII:3543254-3543334 0.00021 42_[+4]_30 chrIV:16024278-16024358 0.00023 53_[+4]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGAGAGA width=8 seqs=39 chrX:10594069-10594149 ( 63) GAGAGAGA 1 chrIV:3824876-3824956 ( 64) GAGAGAGA 1 chrIV:12615493-12615573 ( 69) GAGAGAGA 1 chrI:5768769-5768849 ( 46) GAGAGAGA 1 chrIII:6537418-6537498 ( 64) GAGAGAGA 1 chrI:1651404-1651484 ( 9) GAGAGAGA 1 chrII:9308856-9308936 ( 23) GAGAGAGA 1 chrIII:2126090-2126170 ( 63) GAGAGAGA 1 chrIV:12634028-12634108 ( 23) GAGAGAGA 1 chrIV:14032871-14032951 ( 45) GAGAGAGA 1 chrV:6797047-6797127 ( 53) GAGAGAGA 1 chrI:10585425-10585505 ( 60) GAGAGAGA 1 chrI:11169658-11169738 ( 31) AAGAGAGA 1 chrV:6204263-6204343 ( 10) AAGAGAGA 1 chrI:6079635-6079715 ( 57) AAGAGAGA 1 chrIV:6474940-6475020 ( 46) AAGAGAGA 1 chrV:11083946-11084026 ( 53) AAGAGAGA 1 chrIV:5169577-5169657 ( 44) AAGAGAGA 1 chrX:8286904-8286984 ( 49) GAGAGGGA 1 chrX:2432684-2432764 ( 33) GAGAGGGA 1 chrX:871188-871268 ( 15) GAGAGGGA 1 chrX:3472439-3472519 ( 7) GGGAGAGA 1 chrX:9899854-9899934 ( 22) GGGAGAGA 1 chrX:9102348-9102428 ( 45) GACAGAGA 1 chrIII:11942782-11942862 ( 38) GACAGAGA 1 chrIII:6948032-6948112 ( 56) GACAGAGA 1 chrII:7623576-7623656 ( 14) GAAAGAGA 1 chrX:6729761-6729841 ( 12) GAAAGAGA 1 chrV:20424386-20424466 ( 69) GAAAGAGA 1 chrIII:1591861-1591941 ( 15) GAGAGAGT 1 chrIV:5600437-5600517 ( 2) GAGAGAGT 1 chrI:7711796-7711876 ( 48) GAGAAAGA 1 chrI:14070932-14071012 ( 22) GAGAAAGA 1 chrII:5416395-5416475 ( 21) GAGAGTGA 1 chrX:12183313-12183393 ( 6) AACAGAGA 1 chrI:4032604-4032684 ( 63) AAAAGAGA 1 chrV:975363-975443 ( 73) GGGAGGGA 1 chrIII:3543254-3543334 ( 43) GGGAGGGA 1 chrIV:16024278-16024358 ( 54) AAGAGAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.9222 E= 1.9e-011 -23 -1193 176 -1193 173 -1193 -115 -1193 -140 -117 180 -1193 189 -1193 -1193 -1193 -240 -1193 206 -1193 165 -1193 -83 -340 -1193 -1193 214 -1193 177 -1193 -1193 -182 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 1.9e-011 0.230769 0.000000 0.769231 0.000000 0.897436 0.000000 0.102564 0.000000 0.102564 0.102564 0.794872 0.000000 1.000000 0.000000 0.000000 0.000000 0.051282 0.000000 0.948718 0.000000 0.846154 0.000000 0.128205 0.025641 0.000000 0.000000 1.000000 0.000000 0.923077 0.000000 0.000000 0.076923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGAGA MEME-4 regular expression -------------------------------------------------------------------------------- [GA]AGAGAGA -------------------------------------------------------------------------------- Time 21.51 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCGCGSA MEME-5 width = 8 sites = 24 llr = 210 E-value = 7.8e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCGCGSA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::6 pos.-specific C 7:7:a:62 probability G :a:a:a43 matrix T 3:3::::: bits 2.1 * *** 1.9 * *** 1.7 * *** 1.5 * *** Relative 1.3 ****** Entropy 1.1 ******* (12.6 bits) 0.9 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGCGCGCA consensus T T GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGSA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:10869120-10869200 22 9.11e-06 TAGAGAAACG CGCGCGCA TTGCAAGGAA chrIV:10817212-10817292 26 9.11e-06 CGACTCTGAA CGCGCGCA CGCGGGCAAT chrIV:2896477-2896557 5 9.11e-06 CACG CGCGCGCA ATTCAAACTG chrX:7232663-7232743 67 9.11e-06 TTGTTGTTGA CGCGCGCA GTGTGA chrV:14002622-14002702 73 1.81e-05 ATCACAGTGT CGCGCGGA chrX:2513881-2513961 38 1.81e-05 GCAAGAAGTA CGCGCGGA TGCGTACCCC chrII:11567479-11567559 65 1.81e-05 ATAACCGCGA CGCGCGGA CCGCTTCG chrV:10717002-10717082 34 2.58e-05 AACCCTCCCG CGCGCGCG AGAGCCCCGC chrI:11664907-11664987 41 2.58e-05 ATCCAGTGCT CGCGCGCG AGAGCAAACG chrV:5580614-5580694 66 4.72e-05 GACAGCGAGA CGTGCGCA GCCACTG chrI:7711796-7711876 19 4.72e-05 GCGCAAGCTG TGCGCGCA AGTGGTAGTG chrX:5818456-5818536 3 4.72e-05 TC CGTGCGCA GTTTTCCGCG chrI:2703267-2703347 15 5.50e-05 TCTGTCCTAA CGCGCGCC ATTCGCCACG chrX:5818234-5818314 63 6.26e-05 TTCGCGACAA CGCGCGGG TGGCACACGT chrIV:13031037-13031117 22 8.37e-05 TCCGACCAGC TGCGCGGA AGAGCCGCTC chrIV:3824876-3824956 24 8.37e-05 ACATATGGTG TGCGCGGA GCATTTGGCA chrIV:8533460-8533540 11 8.37e-05 CTGAATATTC CGTGCGGA AGGTTGTTTG chrIII:9703847-9703927 10 1.09e-04 TGTTGTTTA TGCGCGCG TTGCACTCAT chrIII:6710183-6710263 42 1.09e-04 AACTAATAAA TGCGCGCG AATTTTAAAA chrV:7745948-7746028 30 1.22e-04 TCAGAATGTG TGTGCGCA CACCCTTTGC chrX:10990579-10990659 55 1.40e-04 GTTGTTGTTC CGTGCGCC ATATCCCTCT chrX:17456969-17457049 39 1.40e-04 GCCCGTGATC CGTGCGCC GTGTCTGTGC chrIV:16024278-16024358 46 1.58e-04 AGAGTGCCAA CGTGCGGG AAGAGAGTGT chrV:12041282-12041362 35 1.99e-04 CTACCCAAAA TGCGCGGC AAAACAAAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGSA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:10869120-10869200 9.1e-06 21_[+5]_51 chrIV:10817212-10817292 9.1e-06 25_[+5]_47 chrIV:2896477-2896557 9.1e-06 4_[+5]_68 chrX:7232663-7232743 9.1e-06 66_[+5]_6 chrV:14002622-14002702 1.8e-05 72_[+5] chrX:2513881-2513961 1.8e-05 37_[+5]_35 chrII:11567479-11567559 1.8e-05 64_[+5]_8 chrV:10717002-10717082 2.6e-05 33_[+5]_39 chrI:11664907-11664987 2.6e-05 40_[+5]_32 chrV:5580614-5580694 4.7e-05 65_[+5]_7 chrI:7711796-7711876 4.7e-05 18_[+5]_54 chrX:5818456-5818536 4.7e-05 2_[+5]_70 chrI:2703267-2703347 5.5e-05 14_[+5]_58 chrX:5818234-5818314 6.3e-05 62_[+5]_10 chrIV:13031037-13031117 8.4e-05 21_[+5]_51 chrIV:3824876-3824956 8.4e-05 23_[+5]_49 chrIV:8533460-8533540 8.4e-05 10_[+5]_62 chrIII:9703847-9703927 0.00011 9_[+5]_63 chrIII:6710183-6710263 0.00011 41_[+5]_31 chrV:7745948-7746028 0.00012 29_[+5]_43 chrX:10990579-10990659 0.00014 54_[+5]_18 chrX:17456969-17457049 0.00014 38_[+5]_34 chrIV:16024278-16024358 0.00016 45_[+5]_27 chrV:12041282-12041362 0.0002 34_[+5]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGSA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCGCGSA width=8 seqs=24 chrIII:10869120-10869200 ( 22) CGCGCGCA 1 chrIV:10817212-10817292 ( 26) CGCGCGCA 1 chrIV:2896477-2896557 ( 5) CGCGCGCA 1 chrX:7232663-7232743 ( 67) CGCGCGCA 1 chrV:14002622-14002702 ( 73) CGCGCGGA 1 chrX:2513881-2513961 ( 38) CGCGCGGA 1 chrII:11567479-11567559 ( 65) CGCGCGGA 1 chrV:10717002-10717082 ( 34) CGCGCGCG 1 chrI:11664907-11664987 ( 41) CGCGCGCG 1 chrV:5580614-5580694 ( 66) CGTGCGCA 1 chrI:7711796-7711876 ( 19) TGCGCGCA 1 chrX:5818456-5818536 ( 3) CGTGCGCA 1 chrI:2703267-2703347 ( 15) CGCGCGCC 1 chrX:5818234-5818314 ( 63) CGCGCGGG 1 chrIV:13031037-13031117 ( 22) TGCGCGGA 1 chrIV:3824876-3824956 ( 24) TGCGCGGA 1 chrIV:8533460-8533540 ( 11) CGTGCGGA 1 chrIII:9703847-9703927 ( 10) TGCGCGCG 1 chrIII:6710183-6710263 ( 42) TGCGCGCG 1 chrV:7745948-7746028 ( 30) TGTGCGCA 1 chrX:10990579-10990659 ( 55) CGTGCGCC 1 chrX:17456969-17457049 ( 39) CGTGCGCC 1 chrIV:16024278-16024358 ( 46) CGTGCGGG 1 chrV:12041282-12041362 ( 35) TGCGCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGSA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.155 E= 7.8e+001 -1123 162 -1123 10 -1123 -1123 214 -1123 -1123 162 -1123 10 -1123 -1123 214 -1123 -1123 211 -1123 -1123 -1123 -1123 214 -1123 -1123 144 72 -1123 111 -47 14 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGSA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 7.8e+001 0.000000 0.708333 0.000000 0.291667 0.000000 0.000000 1.000000 0.000000 0.000000 0.708333 0.000000 0.291667 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.625000 0.375000 0.000000 0.583333 0.166667 0.250000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGSA MEME-5 regular expression -------------------------------------------------------------------------------- [CT]G[CT]GCG[CG][AG] -------------------------------------------------------------------------------- Time 24.83 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:9553254-9553334 8.74e-01 80 chrI:9546389-9546469 9.35e-01 80 chrIV:15107317-15107397 1.63e-02 47_[+3(1.28e-05)]_25 chrI:9541313-9541393 3.59e-01 80 chrI:9542312-9542392 8.97e-01 80 chrI:9550800-9550880 6.00e-01 80 chrI:9551386-9551466 2.57e-01 80 chrI:9555101-9555181 9.93e-01 80 chrI:9525235-9525315 5.13e-03 28_[+3(2.77e-05)]_44 chrI:9549036-9549116 3.00e-01 80 chrI:2829224-2829304 4.77e-02 46_[+1(1.24e-05)]_26 chrII:13985882-13985962 6.46e-01 80 chrI:9539558-9539638 6.54e-01 80 chrI:9553460-9553540 3.33e-01 80 chrII:7809468-7809548 3.19e-01 67_[+3(6.01e-05)]_5 chrX:11369079-11369159 1.48e-01 80 chrV:2278673-2278753 5.57e-02 72_[+3(1.28e-05)] chrX:15347834-15347914 8.55e-02 26_[+2(7.67e-05)]_46 chrIII:12178280-12178360 1.74e-01 80 chrIII:5668097-5668177 1.13e-01 41_[+2(1.54e-05)]_31 chrV:18589673-18589753 1.89e-03 46_[+3(1.28e-05)]_14_[+2(1.54e-05)]_\ 4 chrX:2920554-2920634 7.07e-02 80 chrI:9547120-9547200 2.74e-02 80 chrIV:8170320-8170400 2.02e-01 80 chrX:5818234-5818314 1.23e-01 62_[+5(6.26e-05)]_10 chrII:9491217-9491297 8.70e-03 2_[+1(1.24e-05)]_70 chrII:8748175-8748255 3.80e-01 80 chrI:10585425-10585505 1.48e-02 59_[+4(1.44e-05)]_4_[+4(4.35e-05)]_\ 1 chrIV:5600437-5600517 5.48e-03 22_[+1(1.24e-05)]_50 chrIV:6648791-6648871 1.03e-02 33_[+3(2.77e-05)]_39 chrV:18710174-18710254 7.74e-01 80 chrX:5140256-5140336 2.59e-03 1_[+1(1.24e-05)]_71 chrIV:16047752-16047832 4.32e-01 80 chrX:13169312-13169392 1.43e-01 80 chrI:13843249-13843329 9.07e-01 80 chrV:11281506-11281586 1.76e-01 80 chrX:7232663-7232743 4.97e-04 8_[+1(2.72e-05)]_50_[+5(9.11e-06)]_\ 6 chrV:6797047-6797127 9.35e-04 52_[+4(1.44e-05)]_20 chrI:4032604-4032684 8.73e-03 49_[+1(1.24e-05)]_23 chrIII:12084874-12084954 8.24e-01 80 chrIV:5526799-5526879 7.98e-01 80 chrIV:14032871-14032951 3.24e-04 44_[+4(1.44e-05)]_7_[+3(1.28e-05)]_\ 13 chrII:6825896-6825976 5.98e-01 80 chrI:9538697-9538777 2.29e-01 80 chrX:10204470-10204550 5.94e-01 80 chrX:5480374-5480454 6.64e-01 80 chrX:6689351-6689431 1.69e-01 62_[+3(6.01e-05)]_10 chrI:8783762-8783842 1.59e-02 26_[+2(6.38e-05)]_46 chrII:7814425-7814505 7.09e-01 80 chrII:6836380-6836460 3.70e-01 80 chrX:5781091-5781171 4.79e-01 80 chrIII:4010304-4010384 3.11e-02 70_[+1(1.24e-05)]_2 chrII:7364215-7364295 2.09e-02 41_[+1(1.24e-05)]_31 chrII:11567479-11567559 1.17e-01 64_[+5(1.81e-05)]_8 chrIV:12634028-12634108 3.57e-02 22_[+4(1.44e-05)]_50 chrIII:3543254-3543334 1.61e-01 80 chrX:1120489-1120569 2.71e-01 80 chrIII:6948032-6948112 1.10e-01 55_[+4(7.02e-05)]_17 chrI:7835636-7835716 2.26e-01 80 chrIV:3763452-3763532 8.91e-01 80 chrI:9545229-9545309 8.31e-02 80 chrIV:12686014-12686094 2.83e-02 38_[+3(1.28e-05)]_34 chrV:1570880-1570960 1.87e-01 80 chrIII:13182125-13182205 1.88e-04 3_[+2(3.07e-05)]_28_[+3(1.28e-05)]_\ 33 chrI:3842610-3842690 2.63e-01 80 chrX:6410533-6410613 5.29e-04 39_[+1(2.72e-05)]_33 chrIV:5169577-5169657 1.76e-01 43_[+4(3.14e-05)]_29 chrI:14070932-14071012 3.72e-04 62_[+3(1.28e-05)]_10 chrIV:12158044-12158124 5.27e-02 80 chrIV:3014843-3014923 2.25e-01 80 chrV:11083946-11084026 3.58e-03 52_[+4(3.14e-05)]_20 chrV:20424386-20424466 2.09e-03 23_[+1(1.24e-05)]_37_[+4(8.72e-05)]_\ 4 chrII:15255909-15255989 2.59e-03 14_[+3(1.28e-05)]_13_[+2(3.07e-05)]_\ 37 chrIV:3521115-3521195 4.38e-03 31_[+3(1.28e-05)]_41 chrI:14067003-14067083 5.12e-01 80 chrV:11674041-11674121 3.98e-01 80 chrII:11902373-11902453 7.04e-01 80 chrX:4576448-4576528 2.85e-01 80 chrIII:2126090-2126170 1.73e-02 62_[+4(1.44e-05)]_10 chrII:7084389-7084469 7.25e-01 80 chrI:11795388-11795468 6.50e-01 80 chrI:4881285-4881365 2.09e-01 80 chrX:871188-871268 4.54e-02 14_[+4(4.35e-05)]_58 chrIII:11942782-11942862 7.80e-02 37_[+4(7.02e-05)]_35 chrIII:2132183-2132263 8.70e-02 34_[+1(1.24e-05)]_27_[+1(1.24e-05)]_\ 3 chrV:7745948-7746028 1.67e-02 80 chrI:7714732-7714812 4.93e-01 80 chrII:5092451-5092531 1.29e-02 80 chrX:6729761-6729841 6.09e-02 11_[+4(8.72e-05)]_61 chrI:9374778-9374858 7.91e-01 80 chrII:6522793-6522873 8.80e-02 12_[+2(3.07e-05)]_34_[+2(7.67e-05)]_\ 18 chrX:13143353-13143433 8.08e-01 80 chrX:13226887-13226967 7.40e-02 55_[+2(1.54e-05)]_17 chrII:9308856-9308936 1.20e-01 20_[+4(1.44e-05)]_52 chrII:10065585-10065665 1.87e-03 4_[+1(6.50e-05)]_68 chrI:13528207-13528287 5.25e-04 54_[+3(1.28e-05)]_4_[+2(1.54e-05)]_\ 6 chrII:3975124-3975204 6.47e-01 80 chrII:4693335-4693415 1.37e-02 23_[+3(1.28e-05)]_35_[+3(1.28e-05)]_\ 6 chrX:6263382-6263462 9.49e-01 80 chrI:4299583-4299663 7.14e-01 80 chrX:9899854-9899934 2.95e-02 21_[+4(5.56e-05)]_51 chrX:5816500-5816580 1.94e-01 80 chrIV:16400510-16400590 9.57e-01 80 chrI:7715829-7715909 2.74e-03 63_[+2(1.54e-05)]_9 chrIV:15573944-15574024 9.51e-02 80 chrX:5818456-5818536 4.47e-03 2_[+5(4.72e-05)]_70 chrII:14901892-14901972 1.00e+00 80 chrI:7711796-7711876 8.18e-04 18_[+5(4.72e-05)]_54 chrX:12183313-12183393 2.78e-01 80 chrX:13420007-13420087 2.09e-02 24_[+1(7.56e-05)]_48 chrIV:8533460-8533540 4.32e-02 10_[+5(8.37e-05)]_62 chrIII:3716298-3716378 9.72e-01 80 chrX:9102348-9102428 1.18e-02 44_[+4(7.02e-05)]_28 chrI:14867696-14867776 2.05e-02 2_[+2(3.07e-05)]_70 chrIV:6474940-6475020 1.48e-01 45_[+4(3.14e-05)]_27 chrII:11305814-11305894 1.26e-02 15_[+3(1.28e-05)]_57 chrII:3897083-3897163 9.32e-03 35_[+3(1.28e-05)]_37 chrI:1651404-1651484 7.16e-05 8_[+4(1.44e-05)]_7_[+1(1.24e-05)]_\ 49 chrV:14498343-14498423 8.94e-01 80 chrI:6175081-6175161 2.44e-01 80 chrV:11074515-11074595 2.27e-01 80 chrII:7623576-7623656 4.10e-04 13_[+4(8.72e-05)]_17_[+3(1.28e-05)]_\ 34 chrI:4320822-4320902 6.36e-03 4_[+3(1.28e-05)]_68 chrIV:8334111-8334191 2.04e-02 1_[+2(3.07e-05)]_[+2(3.07e-05)]_63 chrV:14506104-14506184 2.14e-01 80 chrX:11666716-11666796 1.25e-02 64_[+2(6.38e-05)]_8 chrV:6684708-6684788 2.73e-02 80 chrX:10429355-10429435 1.19e-02 33_[+1(3.97e-05)]_39 chrIII:7958208-7958288 3.90e-01 80 chrIII:6537418-6537498 2.55e-03 50_[+1(6.50e-05)]_5_[+4(1.44e-05)]_\ [+4(3.14e-05)]_1 chrX:11190612-11190692 7.19e-01 80 chrII:161449-161529 4.45e-02 42_[+2(4.58e-05)]_30 chrX:4635805-4635885 1.77e-01 80 chrIV:8112346-8112426 4.07e-02 80 chrII:6926203-6926283 1.73e-02 68_[+1(1.24e-05)]_4 chrI:9543282-9543362 7.53e-01 80 chrII:66367-66447 3.21e-01 80 chrI:4745445-4745525 2.02e-02 52_[+1(1.24e-05)]_20 chrIV:9107630-9107710 3.84e-02 80 chrIII:6710183-6710263 1.55e-02 80 chrX:2513881-2513961 3.20e-02 37_[+5(1.81e-05)]_35 chrX:6686874-6686954 6.29e-02 52_[+1(1.24e-05)]_20 chrIV:13413158-13413238 6.61e-03 48_[+1(1.24e-05)]_24 chrIV:14496640-14496720 1.50e-01 80 chrI:14628121-14628201 3.02e-01 80 chrIII:7734300-7734380 3.23e-01 80 chrII:7812383-7812463 9.35e-01 80 chrIII:13713095-13713175 2.04e-04 2_[+2(3.07e-05)]_15_[+3(2.77e-05)]_\ 47 chrX:5591954-5592034 3.64e-02 14_[+3(4.26e-05)]_58 chrV:20061619-20061699 8.27e-01 80 chrX:5034132-5034212 4.49e-01 80 chrIV:13980225-13980305 3.06e-02 80 chrX:2713093-2713173 2.00e-01 80 chrX:2288182-2288262 1.79e-01 80 chrIV:3231894-3231974 5.21e-02 80 chrI:6079635-6079715 1.20e-01 56_[+4(3.14e-05)]_16 chrX:17456969-17457049 1.88e-03 80 chrV:5580614-5580694 3.63e-04 65_[+5(4.72e-05)]_7 chrX:5518552-5518632 7.32e-01 80 chrII:603137-603217 4.24e-02 41_[+2(3.07e-05)]_31 chrI:5637900-5637980 8.79e-01 80 chrV:6204263-6204343 4.50e-02 9_[+4(3.14e-05)]_63 chrIV:17269875-17269955 6.89e-01 80 chrI:1719231-1719311 5.03e-01 80 chrII:7631340-7631420 4.47e-02 62_[+2(4.58e-05)]_10 chrI:5768769-5768849 6.57e-03 20_[+1(9.03e-05)]_17_[+4(1.44e-05)]_\ 27 chrI:10262383-10262463 1.83e-02 55_[+2(4.58e-05)]_3_[+2(1.54e-05)]_\ 6 chrIII:1591861-1591941 1.29e-03 36_[+1(1.24e-05)]_36 chrI:11664907-11664987 4.20e-02 40_[+5(2.58e-05)]_32 chrII:3810776-3810856 7.37e-03 3_[+3(1.28e-05)]_69 chrII:10202446-10202526 2.92e-01 80 chrV:14002622-14002702 2.69e-04 32_[+1(1.24e-05)]_32_[+5(1.81e-05)] chrX:11675792-11675872 6.45e-01 80 chrX:4809379-4809459 8.95e-01 80 chrX:6066851-6066931 9.70e-01 80 chrV:975363-975443 1.94e-03 80 chrII:601430-601510 3.47e-02 33_[+1(1.24e-05)]_39 chrIV:12615493-12615573 4.52e-02 50_[+4(1.44e-05)]_2_[+4(1.44e-05)]_\ [+4(1.44e-05)]_4 chrX:5210621-5210701 4.53e-02 15_[+1(3.97e-05)]_57 chrV:13906233-13906313 1.00e+00 80 chrI:11554591-11554671 1.85e-01 80 chrII:4569994-4570074 2.60e-01 80 chrV:10717002-10717082 6.80e-02 31_[+5(2.58e-05)]_41 chrX:3320250-3320330 4.32e-01 80 chrX:13519266-13519346 7.12e-02 14_[+2(4.58e-05)]_58 chrI:1559181-1559261 6.66e-05 14_[+3(1.28e-05)]_50_[+2(3.07e-05)] chrI:11169658-11169738 2.24e-06 1_[+3(1.28e-05)]_6_[+2(1.54e-05)]_7_\ [+4(3.14e-05)]_4_[+4(7.02e-05)]_30 chrII:159425-159505 3.39e-02 31_[+2(6.38e-05)]_41 chrX:10394387-10394467 7.09e-01 80 chrX:5071245-5071325 3.24e-01 80 chrX:2046291-2046371 3.73e-02 80 chrX:10990579-10990659 2.37e-01 80 chrII:4672696-4672776 8.43e-01 80 chrX:954852-954932 4.93e-01 80 chrIV:3824876-3824956 4.27e-06 5_[+1(1.24e-05)]_10_[+5(8.37e-05)]_\ 30_[+4(1.44e-05)]_3_[+4(3.14e-05)] chrIV:7486361-7486441 6.78e-04 28_[+3(2.77e-05)]_44 chrIII:6978992-6979072 9.45e-01 80 chrIV:2896477-2896557 1.13e-01 4_[+5(9.11e-06)]_68 chrV:4810946-4811026 8.01e-01 80 chrIV:5507945-5508025 1.15e-01 32_[+1(2.72e-05)]_40 chrX:6959805-6959885 2.79e-01 80 chrIV:7099602-7099682 2.42e-01 80 chrI:11131536-11131616 8.44e-04 35_[+3(1.28e-05)]_4_[+2(1.54e-05)]_\ 25 chrX:2432684-2432764 9.56e-02 32_[+4(4.35e-05)]_40 chrIV:16024278-16024358 1.10e-06 [+2(6.38e-05)]_7_[+2(1.54e-05)]_41_\ [+1(1.24e-05)]_8 chrX:5360842-5360922 7.12e-02 4_[+2(7.67e-05)]_68 chrIV:14356378-14356458 2.83e-01 80 chrX:4961727-4961807 1.07e-01 80 chrI:4941224-4941304 5.44e-01 80 chrIV:10817212-10817292 5.27e-03 25_[+5(9.11e-06)]_47 chrIV:15984431-15984511 2.04e-02 10_[+1(1.24e-05)]_62 chrX:7713046-7713126 1.20e-01 65_[+1(2.72e-05)]_7 chrIV:13031037-13031117 8.62e-04 21_[+5(8.37e-05)]_36_[+2(1.54e-05)]_\ 7 chrX:11662773-11662853 6.53e-01 80 chrIII:9703847-9703927 6.20e-03 80 chrII:2995179-2995259 4.00e-01 80 chrIV:9667276-9667356 2.46e-01 80 chrII:5512125-5512205 7.00e-02 80 chrIII:4502702-4502782 3.95e-02 25_[+1(1.24e-05)]_47 chrI:8138725-8138805 7.47e-01 80 chrII:5461025-5461105 3.31e-01 80 chrV:265221-265301 9.94e-01 80 chrII:13195318-13195398 4.71e-01 80 chrI:2299687-2299767 2.74e-03 80 chrIII:8809697-8809777 5.04e-01 80 chrII:9619550-9619630 1.25e-01 80 chrX:6505170-6505250 2.63e-01 80 chrX:8136621-8136701 1.29e-02 80 chrII:5416395-5416475 8.92e-02 80 chrIV:16498119-16498199 9.10e-02 50_[+2(1.54e-05)]_22 chrIV:6990103-6990183 6.89e-01 80 chrIV:372430-372510 4.17e-01 80 chrX:3472439-3472519 1.28e-01 6_[+4(5.56e-05)]_66 chrII:6823351-6823431 4.14e-02 25_[+3(2.77e-05)]_47 chrX:8286904-8286984 1.71e-04 6_[+1(5.03e-05)]_34_[+4(4.35e-05)]_\ 24 chrX:10594069-10594149 4.82e-02 62_[+4(1.44e-05)]_10 chrI:2703267-2703347 4.64e-02 14_[+5(5.50e-05)]_58 chrIII:8901198-8901278 7.36e-03 17_[+1(2.72e-05)]_55 chrV:14773252-14773332 4.16e-01 80 chrII:11041945-11042025 5.16e-01 80 chrIII:8556961-8557041 1.13e-02 [+2(6.38e-05)]_72 chrIII:10783117-10783197 2.27e-01 80 chrIV:13206066-13206146 4.79e-02 51_[+1(3.97e-05)]_21 chrX:8751033-8751113 2.51e-02 80 chrX:4214748-4214828 7.76e-02 58_[+1(5.03e-05)]_14 chrII:6943824-6943904 1.85e-01 80 chrV:12041282-12041362 1.29e-01 80 chrII:301138-301218 9.82e-02 80 chrI:10539363-10539443 3.76e-02 58_[+2(9.18e-05)]_14 chrIII:10869120-10869200 8.40e-03 21_[+5(9.11e-06)]_51 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************