******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/cnd-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:5687635-5687715 1.0000 80 chrIV:6471363-6471443 1.0000 80 chrI:14788782-14788862 1.0000 80 chrII:2139060-2139140 1.0000 80 chrV:13021702-13021782 1.0000 80 chrIV:11106320-11106400 1.0000 80 chrIV:10190802-10190882 1.0000 80 chrII:868413-868493 1.0000 80 chrIV:3843287-3843367 1.0000 80 chrX:11673533-11673613 1.0000 80 chrIII:12611556-12611636 1.0000 80 chrX:7209300-7209380 1.0000 80 chrIV:8722928-8723008 1.0000 80 chrIII:4523597-4523677 1.0000 80 chrX:1801127-1801207 1.0000 80 chrX:15115889-15115969 1.0000 80 chrI:3959627-3959707 1.0000 80 chrI:9158260-9158340 1.0000 80 chrIV:17277766-17277846 1.0000 80 chrI:9659180-9659260 1.0000 80 chrX:10503542-10503622 1.0000 80 chrII:2095081-2095161 1.0000 80 chrII:1820894-1820974 1.0000 80 chrIV:11743968-11744048 1.0000 80 chrI:3908090-3908170 1.0000 80 chrX:10424929-10425009 1.0000 80 chrV:13120276-13120356 1.0000 80 chrII:8415157-8415237 1.0000 80 chrIII:6479617-6479697 1.0000 80 chrII:312377-312457 1.0000 80 chrV:9239838-9239918 1.0000 80 chrIII:9178394-9178474 1.0000 80 chrIV:16047649-16047729 1.0000 80 chrIII:12579433-12579513 1.0000 80 chrV:153998-154078 1.0000 80 chrII:9059177-9059257 1.0000 80 chrII:8748845-8748925 1.0000 80 chrI:9986793-9986873 1.0000 80 chrII:2996265-2996345 1.0000 80 chrV:3256947-3257027 1.0000 80 chrI:2738369-2738449 1.0000 80 chrX:9702911-9702991 1.0000 80 chrX:7466816-7466896 1.0000 80 chrV:6680620-6680700 1.0000 80 chrIII:6605616-6605696 1.0000 80 chrV:9664073-9664153 1.0000 80 chrIII:5183541-5183621 1.0000 80 chrII:11308814-11308894 1.0000 80 chrX:14327534-14327614 1.0000 80 chrII:10784421-10784501 1.0000 80 chrIV:4448472-4448552 1.0000 80 chrX:6259231-6259311 1.0000 80 chrII:3307546-3307626 1.0000 80 chrII:3975115-3975195 1.0000 80 chrII:11905149-11905229 1.0000 80 chrIV:12854506-12854586 1.0000 80 chrI:6724821-6724901 1.0000 80 chrI:6746618-6746698 1.0000 80 chrI:9374031-9374111 1.0000 80 chrI:11588156-11588236 1.0000 80 chrII:2137352-2137432 1.0000 80 chrI:2750896-2750976 1.0000 80 chrII:8052290-8052370 1.0000 80 chrII:2770888-2770968 1.0000 80 chrI:6489109-6489189 1.0000 80 chrII:2051628-2051708 1.0000 80 chrII:1536093-1536173 1.0000 80 chrII:10986848-10986928 1.0000 80 chrI:2890392-2890472 1.0000 80 chrI:960048-960128 1.0000 80 chrI:447716-447796 1.0000 80 chrI:5411420-5411500 1.0000 80 chrII:11887885-11887965 1.0000 80 chrII:2145936-2146016 1.0000 80 chrII:4640931-4641011 1.0000 80 chrIII:5501485-5501565 1.0000 80 chrX:11211493-11211573 1.0000 80 chrII:1537553-1537633 1.0000 80 chrII:4138306-4138386 1.0000 80 chrI:9910677-9910757 1.0000 80 chrIV:7168113-7168193 1.0000 80 chrI:9904097-9904177 1.0000 80 chrIII:8298410-8298490 1.0000 80 chrIV:17375792-17375872 1.0000 80 chrII:7813533-7813613 1.0000 80 chrIV:17215224-17215304 1.0000 80 chrII:3310108-3310188 1.0000 80 chrX:2524933-2525013 1.0000 80 chrI:11589074-11589154 1.0000 80 chrX:7212832-7212912 1.0000 80 chrX:13146143-13146223 1.0000 80 chrIV:4784822-4784902 1.0000 80 chrI:8281157-8281237 1.0000 80 chrIII:1456318-1456398 1.0000 80 chrII:937465-937545 1.0000 80 chrV:16094989-16095069 1.0000 80 chrIV:12685957-12686037 1.0000 80 chrIV:4756143-4756223 1.0000 80 chrI:13501043-13501123 1.0000 80 chrII:11890819-11890899 1.0000 80 chrIV:5970680-5970760 1.0000 80 chrX:4609800-4609880 1.0000 80 chrI:6080325-6080405 1.0000 80 chrI:5820523-5820603 1.0000 80 chrIV:13121455-13121535 1.0000 80 chrX:2044964-2045044 1.0000 80 chrII:1788147-1788227 1.0000 80 chrX:14779297-14779377 1.0000 80 chrII:2092140-2092220 1.0000 80 chrIII:3086653-3086733 1.0000 80 chrI:14067522-14067602 1.0000 80 chrX:12689638-12689718 1.0000 80 chrX:11675757-11675837 1.0000 80 chrIV:11867835-11867915 1.0000 80 chrI:2966482-2966562 1.0000 80 chrX:9933565-9933645 1.0000 80 chrI:7704047-7704127 1.0000 80 chrII:12991361-12991441 1.0000 80 chrII:2431955-2432035 1.0000 80 chrV:1575832-1575912 1.0000 80 chrI:452732-452812 1.0000 80 chrV:4525639-4525719 1.0000 80 chrII:9063549-9063629 1.0000 80 chrV:14793204-14793284 1.0000 80 chrIII:3543315-3543395 1.0000 80 chrII:2093889-2093969 1.0000 80 chrV:13018889-13018969 1.0000 80 chrI:7714894-7714974 1.0000 80 chrX:6224935-6225015 1.0000 80 chrI:1839609-1839689 1.0000 80 chrV:3449904-3449984 1.0000 80 chrX:1222547-1222627 1.0000 80 chrII:10784946-10785026 1.0000 80 chrV:3448045-3448125 1.0000 80 chrII:2145696-2145776 1.0000 80 chrIV:13116787-13116867 1.0000 80 chrX:591876-591956 1.0000 80 chrX:10613756-10613836 1.0000 80 chrX:3467559-3467639 1.0000 80 chrV:1229046-1229126 1.0000 80 chrX:2375101-2375181 1.0000 80 chrII:11543108-11543188 1.0000 80 chrIV:9770921-9771001 1.0000 80 chrX:2049045-2049125 1.0000 80 chrX:467488-467568 1.0000 80 chrV:1572725-1572805 1.0000 80 chrII:1538747-1538827 1.0000 80 chrX:14486602-14486682 1.0000 80 chrIV:5956823-5956903 1.0000 80 chrIII:12901208-12901288 1.0000 80 chrII:4577563-4577643 1.0000 80 chrIII:8962613-8962693 1.0000 80 chrX:13221515-13221595 1.0000 80 chrII:6411718-6411798 1.0000 80 chrIII:2234363-2234443 1.0000 80 chrV:1371276-1371356 1.0000 80 chrX:11210613-11210693 1.0000 80 chrI:2749507-2749587 1.0000 80 chrX:5698419-5698499 1.0000 80 chrV:16742296-16742376 1.0000 80 chrIII:4519560-4519640 1.0000 80 chrV:13024591-13024671 1.0000 80 chrX:10845143-10845223 1.0000 80 chrI:8512954-8513034 1.0000 80 chrX:17150261-17150341 1.0000 80 chrV:19964777-19964857 1.0000 80 chrII:4827861-4827941 1.0000 80 chrIII:1567600-1567680 1.0000 80 chrX:14447668-14447748 1.0000 80 chrX:9989158-9989238 1.0000 80 chrIII:5940075-5940155 1.0000 80 chrI:3993728-3993808 1.0000 80 chrX:15597570-15597650 1.0000 80 chrV:14650755-14650835 1.0000 80 chrIV:130354-130434 1.0000 80 chrII:5418560-5418640 1.0000 80 chrX:10591510-10591590 1.0000 80 chrIV:6984643-6984723 1.0000 80 chrI:3603294-3603374 1.0000 80 chrX:6258528-6258608 1.0000 80 chrX:10502358-10502438 1.0000 80 chrIII:870727-870807 1.0000 80 chrI:6280434-6280514 1.0000 80 chrIV:5079013-5079093 1.0000 80 chrII:3957499-3957579 1.0000 80 chrV:6684652-6684732 1.0000 80 chrI:11124811-11124891 1.0000 80 chrII:11688134-11688214 1.0000 80 chrX:4125345-4125425 1.0000 80 chrV:1555717-1555797 1.0000 80 chrII:10065598-10065678 1.0000 80 chrIV:178731-178811 1.0000 80 chrII:11794580-11794660 1.0000 80 chrX:8273682-8273762 1.0000 80 chrIV:12549193-12549273 1.0000 80 chrI:3338402-3338482 1.0000 80 chrX:7713087-7713167 1.0000 80 chrIII:1458328-1458408 1.0000 80 chrII:5933225-5933305 1.0000 80 chrX:11948422-11948502 1.0000 80 chrI:12593041-12593121 1.0000 80 chrI:4703332-4703412 1.0000 80 chrIV:175848-175928 1.0000 80 chrIII:4502607-4502687 1.0000 80 chrII:12984855-12984935 1.0000 80 chrX:10508139-10508219 1.0000 80 chrIV:3665266-3665346 1.0000 80 chrX:4972159-4972239 1.0000 80 chrX:8662551-8662631 1.0000 80 chrI:8507746-8507826 1.0000 80 chrIII:2159347-2159427 1.0000 80 chrIII:13525579-13525659 1.0000 80 chrI:2312378-2312458 1.0000 80 chrIV:9264000-9264080 1.0000 80 chrI:2844302-2844382 1.0000 80 chrV:16042493-16042573 1.0000 80 chrX:10851930-10852010 1.0000 80 chrIII:6929193-6929273 1.0000 80 chrX:5995846-5995926 1.0000 80 chrX:13143339-13143419 1.0000 80 chrIV:8399980-8400060 1.0000 80 chrX:3870692-3870772 1.0000 80 chrII:13739623-13739703 1.0000 80 chrX:10991964-10992044 1.0000 80 chrI:5821210-5821290 1.0000 80 chrII:7815592-7815672 1.0000 80 chrIII:179307-179387 1.0000 80 chrI:14141911-14141991 1.0000 80 chrIV:12158084-12158164 1.0000 80 chrX:15273456-15273536 1.0000 80 chrX:14487528-14487608 1.0000 80 chrI:11208264-11208344 1.0000 80 chrIV:9772283-9772363 1.0000 80 chrX:3471184-3471264 1.0000 80 chrIII:8901254-8901334 1.0000 80 chrIV:1895156-1895236 1.0000 80 chrIV:12582191-12582271 1.0000 80 chrII:11889509-11889589 1.0000 80 chrX:16988513-16988593 1.0000 80 chrX:1996181-1996261 1.0000 80 chrX:13881947-13882027 1.0000 80 chrI:381578-381658 1.0000 80 chrIV:12546011-12546091 1.0000 80 chrIV:8182599-8182679 1.0000 80 chrIII:5983939-5984019 1.0000 80 chrX:7502689-7502769 1.0000 80 chrI:4745426-4745506 1.0000 80 chrX:7236952-7237032 1.0000 80 chrI:9940912-9940992 1.0000 80 chrIV:11584182-11584262 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_cnd-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/cnd-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.26 C 0.242 G 0.231 T 0.267 Background letter frequencies (from file dataset with add-one prior applied): A 0.26 C 0.242 G 0.231 T 0.267 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RMCAKMTG MEME-1 width = 8 sites = 172 llr = 1297 E-value = 7.2e-153 ******************************************************************************** -------------------------------------------------------------------------------- Motif RMCAKMTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 54:a:4:: pos.-specific C 14a::6:: probability G 42::5::a matrix T ::::4:a: bits 2.1 * * 1.9 ** ** 1.7 ** ** 1.5 ** ** Relative 1.3 ** ** Entropy 1.1 ** ** (10.9 bits) 0.8 ****** 0.6 * ****** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AACAGCTG consensus GC TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMCAKMTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:7813533-7813613 57 1.36e-05 CCCTCTCTCA ACCAGCTG GTACCAATTG chrII:1537553-1537633 10 1.36e-05 ATTCTGCTC ACCAGCTG TTTTTCACAA chrIV:12854506-12854586 24 1.36e-05 TTTTGCACTG ACCAGCTG TGTGTACTTC chrX:10851930-10852010 37 2.83e-05 AGGGTATTGT AACAGCTG TCATGTTTTA chrX:11210613-11210693 14 2.83e-05 ACACGGTAAA AACAGCTG CGTGACCCAT chrII:1788147-1788227 65 2.83e-05 GTGTGGGAGA AACAGCTG CTCGACGC chrIV:4448472-4448552 56 2.83e-05 GCTCGCGCGC AACAGCTG TTGATGTGTG chrX:14327534-14327614 53 2.83e-05 CTAACTATTG AACAGCTG GTCCGTAAGG chrI:3338402-3338482 51 4.04e-05 TCGTTCCACC GCCAGCTG TTCCGCTGGC chrII:1538747-1538827 27 4.04e-05 CTGTTAGTAG GCCAGCTG GTCCACCCAT chrI:6080325-6080405 71 4.04e-05 GAATAATCTT GCCAGCTG GC chrII:1536093-1536173 49 4.04e-05 CTGTTGATAT GCCAGCTG GTCTACCCAT chrIV:16047649-16047729 15 4.04e-05 TGACAGATTA GCCAGCTG TGATGTCTGT chrIV:1895156-1895236 9 6.92e-05 CTGTCCTC ACCATCTG GTGATCACAc chrI:5821210-5821290 48 6.92e-05 TTGCATAATG ACCATCTG ACCTTGCACA chrX:13143339-13143419 56 6.92e-05 TGCTCTTCCC ACCATCTG CTTCACTTTC chrX:11948422-11948502 70 6.92e-05 CACGCTGCAC ACCATCTG CCG chrII:5933225-5933305 60 6.92e-05 CCATTAGAAA ACCATCTG TCCGTTTGTG chrX:7713087-7713167 69 6.92e-05 GAAGGCACGG ACCATCTG TTTG chrI:6280434-6280514 44 6.92e-05 TCCTCCCCCG ACCATCTG TCCATCTTAT chrIV:6984643-6984723 45 6.92e-05 ACCCAGGAAG ACCATCTG TTCGGCACTT chrII:4827861-4827941 50 6.92e-05 GTGTATTTTG GACAGCTG TTGATGACAT chrX:2375101-2375181 38 6.92e-05 ACGTGACGAG ACCATCTG CCGCGCTGAG chrX:591876-591956 34 6.92e-05 AAGCCCATTG ACCATCTG TTACCCAGAT chrX:6224935-6225015 15 6.92e-05 AAAAGCGGTC GACAGCTG GTCCGTCTTC chrII:2431955-2432035 32 6.92e-05 ACGTCAACGT ACCATCTG CCAACGTACC chrX:2044964-2045044 24 6.92e-05 CCCCATGCTG GACAGCTG CCAAAGAGCA chrIV:13121455-13121535 39 6.92e-05 ATGTATGATG ACCATCTG TCAATTACCG chrI:13501043-13501123 48 6.92e-05 ACACGTGGCG ACCATCTG GCACATCTGT chrX:13146143-13146223 27 6.92e-05 GGCTGGCACC ACCATCTG TCTGAGCCGC chrI:11589074-11589154 33 6.92e-05 GATTCCCGGT GACAGCTG CCTCTCCACG chrIV:17215224-17215304 41 6.92e-05 GCCCCCAATG GACAGCTG GCTCACCAGC chrI:9910677-9910757 9 6.92e-05 AGGAGGAC ACCATCTG CTTAGCGGCG chrX:11211493-11211573 9 6.92e-05 GACACAGA GACAGCTG CATTTGTGAA chrII:2145936-2146016 73 6.92e-05 ATTTTTCCTG ACCATCTG chrI:447716-447796 26 6.92e-05 CTGACGTTCA ACCATCTG GTATTCCTGG chrII:8052290-8052370 12 6.92e-05 TATCCAAGTC ACCATCTG CTTTCATCTT chrI:11588156-11588236 9 6.92e-05 GATACAGT ACCATCTG TCTCTGAGAG chrII:11308814-11308894 39 6.92e-05 CACCCAAACG ACCATCTG CTCTTTTCAA chrV:9664073-9664153 36 6.92e-05 CTCCAGATAC ACCATCTG TCATTTCAAG chrIII:6605616-6605696 47 6.92e-05 CAATAACCCT ACCATCTG TCCCTTATTG chrII:8748845-8748925 44 6.92e-05 GGATGCACCC ACCATCTG CTCTTTTTCC chrV:153998-154078 17 6.92e-05 CAATGCACTG ACCATCTG CTCATAGGAC chrIV:11743968-11744048 51 6.92e-05 ACGCAACGCG GACAGCTG TTCGTTGGTA chrX:10503542-10503622 21 6.92e-05 CAAGTCAGCG ACCATCTG TTATCTTGTG chrI:9659180-9659260 54 6.92e-05 GACGTAATAA ACCATCTG TTGTGGAAAG chrIV:17277766-17277846 50 6.92e-05 CAGGTGTTCA ACCATCTG CCGGGAATTA chrI:9158260-9158340 65 6.92e-05 TTTTGTTCTG ACCATCTG TCCATTTT chrX:1801127-1801207 30 6.92e-05 CTATTTGCGT ACCATCTG CCACCCTCCG chrIII:12611556-12611636 42 6.92e-05 TTTAGTACGT ACCATCTG CTACTATGAC chrX:11673533-11673613 9 6.92e-05 CCAGCAAG ACCATCTG TCATCATGCG chrIV:3843287-3843367 73 6.92e-05 CTCAAGATAC ACCATCTG chrV:13021702-13021782 55 6.92e-05 CATCCAAATG ACCATCTG TCATCAGACG chrII:2139060-2139140 48 6.92e-05 ATTTTTCCTG ACCATCTG CTCACTGCTC chrV:6684652-6684732 16 8.62e-05 ACGGAAGGAA AACATCTG GAAAGGATAA chrX:17150261-17150341 25 8.62e-05 TCGAAGGTCC AACATCTG TTGAGGCGAA chrII:6411718-6411798 27 8.62e-05 TGAACAGTGC AACATCTG TCAAAATGAC chrX:12689638-12689718 33 8.62e-05 GGTCAGAAGC AACATCTG TCGACCGACT chrI:5820523-5820603 7 8.62e-05 GGAGGT AACATCTG CCACGTCATC chrIV:12685957-12686037 7 8.62e-05 ACTGAC AACATCTG GTGCTCAGTC chrX:15115889-15115969 38 8.62e-05 gtgTAACAAC AACATCTG TTGGTATGAC chrX:7236952-7237032 45 1.15e-04 GCCGTCGAAT GCCATCTG TTCCTGCTCT chrI:381578-381658 40 1.15e-04 CCTTTTATTT GCCATCTG GCCCCGTCTT chrII:11889509-11889589 16 1.15e-04 CCGGGTGCCG GCCATCTG CCCTCCTTCC chrX:14487528-14487608 53 1.15e-04 CATTTGCAAG GCCATCTG TTCTAAAAAC chrIV:12158084-12158164 18 1.15e-04 TCCTTTTGTT GCCATCTG CTGTCCGCAt chrX:3870692-3870772 38 1.15e-04 ATTGGGATGA GCCATCTG TCACACGGAA chrX:5995846-5995926 61 1.15e-04 TGCGCGGGCT ACCAGATG GACGACTCAT chrX:10591510-10591590 56 1.15e-04 AAGAGGCCAC GCCATCTG TCATTAAGAA chrV:16742296-16742376 45 1.15e-04 CAGCGTACCA ACCAGATG TCGTTTTTAT chrIV:5956823-5956903 64 1.15e-04 TTGAGGACAT GCCATCTG TCCTCATGT chrIV:5970680-5970760 23 1.15e-04 AATACATTTT GCCATCTG TCCCTCCGTC chrIII:1456318-1456398 15 1.15e-04 TGGATGTTGA GCCATCTG TACATGCTGA chrI:2750896-2750976 63 1.15e-04 tccttcttcG GCCATCTG CCGCACTCAC chrX:9702911-9702991 44 1.15e-04 ACCAATTTCG GCCATCTG TCACTTGAGC chrIII:9178394-9178474 36 1.15e-04 AGTAGTAGCA GCCATCTG TCACCGTGTT chrIV:11106320-11106400 20 1.15e-04 CTTGATCATT GCCATCTG TCAACGACAG chrIII:5983939-5984019 25 1.46e-04 GTACGAAGAA AACAGATG GGAATACCCG chrII:11688134-11688214 35 1.46e-04 AGAAATTACG AACAGATG GCTGGTGCGT chrII:5418560-5418640 30 1.46e-04 AAAGAAAACG AACAGATG CTCTTATTCT chrX:15597570-15597650 25 1.46e-04 TGGAACATGC AACAGATG GTACATCTTT chrX:2049045-2049125 49 1.46e-04 GAAACAACAC AACAGATG GACAAAAGAT chrII:2092140-2092220 10 1.46e-04 CCCCGCCAC AACAGATG GCAAATATTA chrX:2524933-2525013 69 1.46e-04 TCGTACCATA AACAGATG ACAA chrI:9904097-9904177 32 1.46e-04 GCAATCTGGC GACATCTG CCACTTCTTA chrII:2770888-2770968 47 1.46e-04 AGGAACATTG AACAGATG TTATTTTTGA chrI:6746618-6746698 55 1.46e-04 GGATGTGTGT AACAGATG GTGGTGAGAC chrII:11905149-11905229 25 1.46e-04 TGGGTTGAAG AACAGATG GATTAGGGCT chrV:3256947-3257027 43 1.46e-04 GAGGGTGATG AACAGATG GTCCCTTACC chrI:9986793-9986873 16 1.46e-04 TTGGAGCATG AACAGATG GGCGGAGAGA chrV:13120276-13120356 29 1.46e-04 AATGGTGTGT GACATCTG TCAAGCCATT chrI:3908090-3908170 21 1.46e-04 TCGTAATAAC GACATCTG CGCCGAACCA chrIII:4523597-4523677 20 1.46e-04 GTTGGTGTCA AACAGATG ACAGATGGCC chrI:14788782-14788862 59 1.46e-04 TTTGAGATGG AACAGATG GTCAAGTTGG chrV:13024591-13024671 12 1.59e-04 CTGACAAATG GCCAGATG TGTTAGAGCA chrX:7212832-7212912 41 1.59e-04 GTACGTTAGT GCCAGATG GTCTTTTTGC chrX:16988513-16988593 73 1.90e-04 ACAGCCGGTT GACAGATG chrII:11794580-11794660 2 1.90e-04 G GACAGATG GATGAAAGGC chrIII:2234363-2234443 1 1.90e-04 . ACCATATG ACGTCATAAA chrIII:3543315-3543395 59 1.90e-04 GGTGGTAGGT GACAGATG TTTCGAAATG chrIV:11867835-11867915 22 1.90e-04 GTAGTGTCAC GACAGATG GCACTTCGGT chrI:2890392-2890472 49 1.90e-04 TAGCAGAGAC GACAGATG GCACACAGGC chrII:3307546-3307626 37 1.90e-04 TGGTAAAAAA GACAGATG GCAAGTGTAG chrIII:5183541-5183621 9 1.90e-04 TACGGGAT GACAGATG TTCCCGCCGT chrII:9059177-9059257 62 1.90e-04 GACATGAATG GACAGATG CTCTAGAAAA chrIII:6479617-6479697 52 1.90e-04 AGCCGACACA GACAGATG GTCAATATGC chrII:1820894-1820974 35 1.90e-04 TGGTGACCCC GACAGATG GCAAATATTG chrII:2095081-2095161 26 1.90e-04 CCCCGACACC GACAGATG GCAAATATTA chrI:3959627-3959707 31 1.90e-04 AAATGACGAC GACAGATG GTACAGGAGA chrIV:8722928-8723008 48 1.90e-04 GAAAAGAAAT GACAGATG GTGAAGGGTA chrII:868413-868493 17 1.90e-04 CCCCGTCTGC GACAGATG GACAGAGGTC chrIV:6471363-6471443 19 1.90e-04 AAAAGATGCG GACAGATG GTAGAAAATG chrI:5687635-5687715 38 1.90e-04 GTGTGCAATT GACAGATG GTCTCAGTGA chrX:10502358-10502438 13 2.21e-04 TTGACTACAA AACATATG TCGTTTGTGT chrX:13221515-13221595 19 2.21e-04 CCGGCACAAC AGCAGCTG CAAGGTCAAC chrX:10613756-10613836 42 2.21e-04 GCCGTGATAA AACATATG CTCTCGGCTA chrV:3448045-3448125 9 2.21e-04 ACACTACG AGCAGCTG GTACCATGCA chrX:7466816-7466896 36 2.21e-04 GTAAGGTGGC AACATATG GCAACTACCG chrII:2137352-2137432 48 2.36e-04 TGTCTCCCTT GCCATATG CCCAGTCCCA chrI:11124811-11124891 37 2.64e-04 CGCGCACGCA GACATATG CTCTATTGTT chrIII:870727-870807 23 2.64e-04 GAGAGGTACA GACATATG CACAGCAATT chrII:10784946-10785026 36 2.64e-04 GCGGGAAATG GGCAGCTG TTGCACCTAG chrV:13018889-13018969 62 2.64e-04 TATGTCCATT GGCAGCTG GTCAGTTCTT chrIII:8298410-8298490 11 2.64e-04 GAATTCTGAT GGCAGCTG GCGGTGTTCA chrII:3975115-3975195 55 2.64e-04 TGATGAAAAT GGCAGCTG CACATGGAAT chrIV:12582191-12582271 5 3.19e-04 AGCC AGCAGATG tctctctctc chrIII:6929193-6929273 58 3.19e-04 GTTTTTGAAG AGCAGATG GTGTTCTTCT chrIII:2159347-2159427 43 3.19e-04 CCCTGACCCC AGCAGATG ACGTCATTTT chrV:19964777-19964857 3 3.19e-04 AA CCCAGCTG GTTTTTATTC chrII:2093889-2093969 9 3.19e-04 GTCGAGTG AGCAGATG GCGATTAGAG chrI:14067522-14067602 3 3.19e-04 TA AGCAGATG GCCCTGGACT chrIII:3086653-3086733 44 3.19e-04 CAGCAGCAGC AGCAGATG CCCCTCCCAG chrIV:4756143-4756223 12 3.19e-04 ATAAAGAATG AGCAGATG GGAGGATTGA chrIII:5501485-5501565 45 3.19e-04 TTTAATGAAC GGCATCTG CCTACCCATC chrII:4640931-4641011 44 3.19e-04 GAGAGAAATG AGCAGATG GTCAACTCCC chrI:6489109-6489189 6 3.19e-04 AAGGG AGCAGATG GTGTCAAGAA chrI:6724821-6724901 54 3.19e-04 TCTCTCCTTC AGCAGATG GCCACTGGGA chrX:4972159-4972239 48 3.33e-04 TCTTCTGTTT CACAGCTG TCGTCTCCGC chrX:7209300-7209380 22 3.33e-04 GAATTGGGCG CACAGCTG GGATCTACAT chrX:7502689-7502769 16 3.45e-04 ATGACGACGT GGCAGATG TCGCTTATCT chrX:3471184-3471264 54 3.45e-04 GGTGAAAACA GGCAGATG GTCAATGATT chrI:4703332-4703412 21 3.45e-04 CCCGGTGTGT GGCAGATG GTGAGCCATT chrI:3603294-3603374 51 3.45e-04 GTCTCCAAAT GGCAGATG TACTCATTGC chrIV:13116787-13116867 52 3.45e-04 GATGTGTTTT GGCAGATG GGAGAGAACG chrI:960048-960128 49 3.45e-04 GATGTATCGT GGCAGATG GCTGGCTGAC chrIV:10190802-10190882 38 3.45e-04 ATTTTCATCA GGCAGATG GTCGGTAGTT chrIII:4502607-4502687 6 3.76e-04 GGTCT CCCATCTG GACTTTTTGT chrV:14650755-14650835 62 3.76e-04 ACTATCTGAG CCCATCTG CCGCTTTCGT chrI:8512954-8513034 47 3.76e-04 TACATCCATC CCCATCTG TTCCCACATC chrX:6259231-6259311 64 3.76e-04 CAAATATGTA CCCATCTG GTCAGAACA chrX:4125345-4125425 32 3.92e-04 CTCATCTGTG CACATCTG CTTCACGCAT chrV:1572725-1572805 14 3.92e-04 GACACCCAGA CACATCTG TTCAACCCAT chrI:9374031-9374111 27 3.92e-04 TCCAAGAGAA CACATCTG GCGACGGAGC chrI:2844302-2844382 50 4.20e-04 AATTGCGACC CCCAGATG GTGTCGCATT chrIII:4519560-4519640 49 4.20e-04 CTCCTATTAA GGCATATG CTTTTTATTA chrI:9940912-9940992 17 4.34e-04 GAGGTACGCA CACAGATG TTGCGCAGTT chrIV:3665266-3665346 33 4.34e-04 CGCCCGGAAG CACAGATG AACACGAAAT chrII:3957499-3957579 49 4.34e-04 CACAATCTGT CACAGATG AGGGAAGTGT chrX:5698419-5698499 2 4.34e-04 A CACAGATG TACGGCAAGA chrX:10991964-10992044 48 4.93e-04 TCTGCTCCGT ACCACCTG CCAGCCCAGA chrI:3993728-3993808 32 4.93e-04 CAATGCTCTC ACCACCTG CCAGTGTTGC chrX:8273682-8273762 5 5.09e-04 TTTG AACACCTG TTGTGGTCTT chrI:2749507-2749587 18 5.09e-04 TTACAGTAAC AACACCTG CTGCCACTAG chrX:14486602-14486682 17 5.89e-04 ACACTCCGTG AACAGGTG CACTTCTCAC chrII:12991361-12991441 53 5.89e-04 ACATACTGTC AACAGGTG CTCGAGGCTT chrX:4609800-4609880 46 5.89e-04 GCAGGCAGAC AACAGGTG CTGCACAATA chrX:1996181-1996261 52 7.76e-04 CATTCTATAC ATCAGCTG GCGAGTGAGA chrV:1575832-1575912 40 8.02e-04 CAGACTGGCT GTCAGCTG TCATCTGATG chrII:7815592-7815672 54 9.02e-04 TGCAGTTGTC GGCAGGTG TGTGGTAGAC chrX:10845143-10845223 28 9.02e-04 TCATGGAGAG GGCAGGTG GCAAGAAAGG chrV:3449904-3449984 46 9.02e-04 TAAGGATGCT CCCACCTG CCCCATGGAA chrV:4525639-4525719 28 9.31e-04 CAATCCTCTA CACACCTG CGCGCATCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMCAKMTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:7813533-7813613 1.4e-05 56_[+1]_16 chrII:1537553-1537633 1.4e-05 9_[+1]_63 chrIV:12854506-12854586 1.4e-05 23_[+1]_49 chrX:10851930-10852010 2.8e-05 36_[+1]_36 chrX:11210613-11210693 2.8e-05 13_[+1]_59 chrII:1788147-1788227 2.8e-05 64_[+1]_8 chrIV:4448472-4448552 2.8e-05 55_[+1]_17 chrX:14327534-14327614 2.8e-05 52_[+1]_20 chrI:3338402-3338482 4e-05 50_[+1]_22 chrII:1538747-1538827 4e-05 26_[+1]_46 chrI:6080325-6080405 4e-05 70_[+1]_2 chrII:1536093-1536173 4e-05 48_[+1]_24 chrIV:16047649-16047729 4e-05 14_[+1]_58 chrIV:1895156-1895236 6.9e-05 8_[+1]_64 chrI:5821210-5821290 6.9e-05 47_[+1]_25 chrX:13143339-13143419 6.9e-05 55_[+1]_17 chrX:11948422-11948502 6.9e-05 69_[+1]_3 chrII:5933225-5933305 6.9e-05 59_[+1]_13 chrX:7713087-7713167 6.9e-05 68_[+1]_4 chrI:6280434-6280514 6.9e-05 43_[+1]_29 chrIV:6984643-6984723 6.9e-05 44_[+1]_28 chrII:4827861-4827941 6.9e-05 49_[+1]_23 chrX:2375101-2375181 6.9e-05 37_[+1]_35 chrX:591876-591956 6.9e-05 33_[+1]_39 chrX:6224935-6225015 6.9e-05 14_[+1]_58 chrII:2431955-2432035 6.9e-05 31_[+1]_41 chrX:2044964-2045044 6.9e-05 23_[+1]_49 chrIV:13121455-13121535 6.9e-05 38_[+1]_34 chrI:13501043-13501123 6.9e-05 47_[+1]_25 chrX:13146143-13146223 6.9e-05 26_[+1]_46 chrI:11589074-11589154 6.9e-05 32_[+1]_40 chrIV:17215224-17215304 6.9e-05 40_[+1]_32 chrI:9910677-9910757 6.9e-05 8_[+1]_64 chrX:11211493-11211573 6.9e-05 8_[+1]_64 chrII:2145936-2146016 6.9e-05 72_[+1] chrI:447716-447796 6.9e-05 25_[+1]_47 chrII:8052290-8052370 6.9e-05 11_[+1]_61 chrI:11588156-11588236 6.9e-05 8_[+1]_64 chrII:11308814-11308894 6.9e-05 38_[+1]_34 chrV:9664073-9664153 6.9e-05 35_[+1]_37 chrIII:6605616-6605696 6.9e-05 46_[+1]_26 chrII:8748845-8748925 6.9e-05 43_[+1]_29 chrV:153998-154078 6.9e-05 16_[+1]_56 chrIV:11743968-11744048 6.9e-05 50_[+1]_22 chrX:10503542-10503622 6.9e-05 20_[+1]_52 chrI:9659180-9659260 6.9e-05 53_[+1]_19 chrIV:17277766-17277846 6.9e-05 49_[+1]_23 chrI:9158260-9158340 6.9e-05 64_[+1]_8 chrX:1801127-1801207 6.9e-05 29_[+1]_43 chrIII:12611556-12611636 6.9e-05 41_[+1]_31 chrX:11673533-11673613 6.9e-05 8_[+1]_64 chrIV:3843287-3843367 6.9e-05 72_[+1] chrV:13021702-13021782 6.9e-05 54_[+1]_18 chrII:2139060-2139140 6.9e-05 47_[+1]_25 chrV:6684652-6684732 8.6e-05 15_[+1]_57 chrX:17150261-17150341 8.6e-05 24_[+1]_48 chrII:6411718-6411798 8.6e-05 26_[+1]_46 chrX:12689638-12689718 8.6e-05 32_[+1]_40 chrI:5820523-5820603 8.6e-05 6_[+1]_66 chrIV:12685957-12686037 8.6e-05 6_[+1]_66 chrX:15115889-15115969 8.6e-05 37_[+1]_35 chrX:7236952-7237032 0.00011 44_[+1]_28 chrI:381578-381658 0.00011 39_[+1]_33 chrII:11889509-11889589 0.00011 15_[+1]_57 chrX:14487528-14487608 0.00011 52_[+1]_20 chrIV:12158084-12158164 0.00011 17_[+1]_55 chrX:3870692-3870772 0.00011 37_[+1]_35 chrX:5995846-5995926 0.00011 60_[+1]_12 chrX:10591510-10591590 0.00011 55_[+1]_17 chrV:16742296-16742376 0.00011 44_[+1]_28 chrIV:5956823-5956903 0.00011 63_[+1]_9 chrIV:5970680-5970760 0.00011 22_[+1]_50 chrIII:1456318-1456398 0.00011 14_[+1]_58 chrI:2750896-2750976 0.00011 62_[+1]_10 chrX:9702911-9702991 0.00011 43_[+1]_29 chrIII:9178394-9178474 0.00011 35_[+1]_37 chrIV:11106320-11106400 0.00011 19_[+1]_53 chrIII:5983939-5984019 0.00015 24_[+1]_48 chrII:11688134-11688214 0.00015 34_[+1]_38 chrII:5418560-5418640 0.00015 29_[+1]_43 chrX:15597570-15597650 0.00015 24_[+1]_48 chrX:2049045-2049125 0.00015 48_[+1]_24 chrII:2092140-2092220 0.00015 9_[+1]_63 chrX:2524933-2525013 0.00015 68_[+1]_4 chrI:9904097-9904177 0.00015 31_[+1]_41 chrII:2770888-2770968 0.00015 46_[+1]_26 chrI:6746618-6746698 0.00015 54_[+1]_18 chrII:11905149-11905229 0.00015 24_[+1]_48 chrV:3256947-3257027 0.00015 42_[+1]_30 chrI:9986793-9986873 0.00015 15_[+1]_57 chrV:13120276-13120356 0.00015 28_[+1]_44 chrI:3908090-3908170 0.00015 20_[+1]_52 chrIII:4523597-4523677 0.00015 19_[+1]_53 chrI:14788782-14788862 0.00015 58_[+1]_14 chrV:13024591-13024671 0.00016 11_[+1]_61 chrX:7212832-7212912 0.00016 40_[+1]_32 chrX:16988513-16988593 0.00019 72_[+1] chrII:11794580-11794660 0.00019 1_[+1]_71 chrIII:2234363-2234443 0.00019 [+1]_72 chrIII:3543315-3543395 0.00019 58_[+1]_14 chrIV:11867835-11867915 0.00019 21_[+1]_51 chrI:2890392-2890472 0.00019 48_[+1]_24 chrII:3307546-3307626 0.00019 36_[+1]_36 chrIII:5183541-5183621 0.00019 8_[+1]_64 chrII:9059177-9059257 0.00019 61_[+1]_11 chrIII:6479617-6479697 0.00019 51_[+1]_21 chrII:1820894-1820974 0.00019 34_[+1]_38 chrII:2095081-2095161 0.00019 25_[+1]_47 chrI:3959627-3959707 0.00019 30_[+1]_42 chrIV:8722928-8723008 0.00019 47_[+1]_25 chrII:868413-868493 0.00019 16_[+1]_56 chrIV:6471363-6471443 0.00019 18_[+1]_54 chrI:5687635-5687715 0.00019 37_[+1]_35 chrX:10502358-10502438 0.00022 12_[+1]_60 chrX:13221515-13221595 0.00022 18_[+1]_54 chrX:10613756-10613836 0.00022 41_[+1]_31 chrV:3448045-3448125 0.00022 8_[+1]_64 chrX:7466816-7466896 0.00022 35_[+1]_37 chrII:2137352-2137432 0.00024 47_[+1]_25 chrI:11124811-11124891 0.00026 36_[+1]_36 chrIII:870727-870807 0.00026 22_[+1]_50 chrII:10784946-10785026 0.00026 35_[+1]_37 chrV:13018889-13018969 0.00026 61_[+1]_11 chrIII:8298410-8298490 0.00026 10_[+1]_62 chrII:3975115-3975195 0.00026 54_[+1]_18 chrIV:12582191-12582271 0.00032 4_[+1]_68 chrIII:6929193-6929273 0.00032 57_[+1]_15 chrIII:2159347-2159427 0.00032 42_[+1]_30 chrV:19964777-19964857 0.00032 2_[+1]_70 chrII:2093889-2093969 0.00032 8_[+1]_64 chrI:14067522-14067602 0.00032 2_[+1]_70 chrIII:3086653-3086733 0.00032 43_[+1]_29 chrIV:4756143-4756223 0.00032 11_[+1]_61 chrIII:5501485-5501565 0.00032 44_[+1]_28 chrII:4640931-4641011 0.00032 43_[+1]_29 chrI:6489109-6489189 0.00032 5_[+1]_67 chrI:6724821-6724901 0.00032 53_[+1]_19 chrX:4972159-4972239 0.00033 47_[+1]_25 chrX:7209300-7209380 0.00033 21_[+1]_51 chrX:7502689-7502769 0.00034 15_[+1]_57 chrX:3471184-3471264 0.00034 53_[+1]_19 chrI:4703332-4703412 0.00034 20_[+1]_52 chrI:3603294-3603374 0.00034 50_[+1]_22 chrIV:13116787-13116867 0.00034 51_[+1]_21 chrI:960048-960128 0.00034 48_[+1]_24 chrIV:10190802-10190882 0.00034 37_[+1]_35 chrIII:4502607-4502687 0.00038 5_[+1]_67 chrV:14650755-14650835 0.00038 61_[+1]_11 chrI:8512954-8513034 0.00038 46_[+1]_26 chrX:6259231-6259311 0.00038 63_[+1]_9 chrX:4125345-4125425 0.00039 31_[+1]_41 chrV:1572725-1572805 0.00039 13_[+1]_59 chrI:9374031-9374111 0.00039 26_[+1]_46 chrI:2844302-2844382 0.00042 49_[+1]_23 chrIII:4519560-4519640 0.00042 48_[+1]_24 chrI:9940912-9940992 0.00043 16_[+1]_56 chrIV:3665266-3665346 0.00043 32_[+1]_40 chrII:3957499-3957579 0.00043 48_[+1]_24 chrX:5698419-5698499 0.00043 1_[+1]_71 chrX:10991964-10992044 0.00049 47_[+1]_25 chrI:3993728-3993808 0.00049 31_[+1]_41 chrX:8273682-8273762 0.00051 4_[+1]_68 chrI:2749507-2749587 0.00051 17_[+1]_55 chrX:14486602-14486682 0.00059 16_[+1]_56 chrII:12991361-12991441 0.00059 52_[+1]_20 chrX:4609800-4609880 0.00059 45_[+1]_27 chrX:1996181-1996261 0.00078 51_[+1]_21 chrV:1575832-1575912 0.0008 39_[+1]_33 chrII:7815592-7815672 0.0009 53_[+1]_19 chrX:10845143-10845223 0.0009 27_[+1]_45 chrV:3449904-3449984 0.0009 45_[+1]_27 chrV:4525639-4525719 0.00093 27_[+1]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMCAKMTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RMCAKMTG width=8 seqs=172 chrII:7813533-7813613 ( 57) ACCAGCTG 1 chrII:1537553-1537633 ( 10) ACCAGCTG 1 chrIV:12854506-12854586 ( 24) ACCAGCTG 1 chrX:10851930-10852010 ( 37) AACAGCTG 1 chrX:11210613-11210693 ( 14) AACAGCTG 1 chrII:1788147-1788227 ( 65) AACAGCTG 1 chrIV:4448472-4448552 ( 56) AACAGCTG 1 chrX:14327534-14327614 ( 53) AACAGCTG 1 chrI:3338402-3338482 ( 51) GCCAGCTG 1 chrII:1538747-1538827 ( 27) GCCAGCTG 1 chrI:6080325-6080405 ( 71) GCCAGCTG 1 chrII:1536093-1536173 ( 49) GCCAGCTG 1 chrIV:16047649-16047729 ( 15) GCCAGCTG 1 chrIV:1895156-1895236 ( 9) ACCATCTG 1 chrI:5821210-5821290 ( 48) ACCATCTG 1 chrX:13143339-13143419 ( 56) ACCATCTG 1 chrX:11948422-11948502 ( 70) ACCATCTG 1 chrII:5933225-5933305 ( 60) ACCATCTG 1 chrX:7713087-7713167 ( 69) ACCATCTG 1 chrI:6280434-6280514 ( 44) ACCATCTG 1 chrIV:6984643-6984723 ( 45) ACCATCTG 1 chrII:4827861-4827941 ( 50) GACAGCTG 1 chrX:2375101-2375181 ( 38) ACCATCTG 1 chrX:591876-591956 ( 34) ACCATCTG 1 chrX:6224935-6225015 ( 15) GACAGCTG 1 chrII:2431955-2432035 ( 32) ACCATCTG 1 chrX:2044964-2045044 ( 24) GACAGCTG 1 chrIV:13121455-13121535 ( 39) ACCATCTG 1 chrI:13501043-13501123 ( 48) ACCATCTG 1 chrX:13146143-13146223 ( 27) ACCATCTG 1 chrI:11589074-11589154 ( 33) GACAGCTG 1 chrIV:17215224-17215304 ( 41) GACAGCTG 1 chrI:9910677-9910757 ( 9) ACCATCTG 1 chrX:11211493-11211573 ( 9) GACAGCTG 1 chrII:2145936-2146016 ( 73) ACCATCTG 1 chrI:447716-447796 ( 26) ACCATCTG 1 chrII:8052290-8052370 ( 12) ACCATCTG 1 chrI:11588156-11588236 ( 9) ACCATCTG 1 chrII:11308814-11308894 ( 39) ACCATCTG 1 chrV:9664073-9664153 ( 36) ACCATCTG 1 chrIII:6605616-6605696 ( 47) ACCATCTG 1 chrII:8748845-8748925 ( 44) ACCATCTG 1 chrV:153998-154078 ( 17) ACCATCTG 1 chrIV:11743968-11744048 ( 51) GACAGCTG 1 chrX:10503542-10503622 ( 21) ACCATCTG 1 chrI:9659180-9659260 ( 54) ACCATCTG 1 chrIV:17277766-17277846 ( 50) ACCATCTG 1 chrI:9158260-9158340 ( 65) ACCATCTG 1 chrX:1801127-1801207 ( 30) ACCATCTG 1 chrIII:12611556-12611636 ( 42) ACCATCTG 1 chrX:11673533-11673613 ( 9) ACCATCTG 1 chrIV:3843287-3843367 ( 73) ACCATCTG 1 chrV:13021702-13021782 ( 55) ACCATCTG 1 chrII:2139060-2139140 ( 48) ACCATCTG 1 chrV:6684652-6684732 ( 16) AACATCTG 1 chrX:17150261-17150341 ( 25) AACATCTG 1 chrII:6411718-6411798 ( 27) AACATCTG 1 chrX:12689638-12689718 ( 33) AACATCTG 1 chrI:5820523-5820603 ( 7) AACATCTG 1 chrIV:12685957-12686037 ( 7) AACATCTG 1 chrX:15115889-15115969 ( 38) AACATCTG 1 chrX:7236952-7237032 ( 45) GCCATCTG 1 chrI:381578-381658 ( 40) GCCATCTG 1 chrII:11889509-11889589 ( 16) GCCATCTG 1 chrX:14487528-14487608 ( 53) GCCATCTG 1 chrIV:12158084-12158164 ( 18) GCCATCTG 1 chrX:3870692-3870772 ( 38) GCCATCTG 1 chrX:5995846-5995926 ( 61) ACCAGATG 1 chrX:10591510-10591590 ( 56) GCCATCTG 1 chrV:16742296-16742376 ( 45) ACCAGATG 1 chrIV:5956823-5956903 ( 64) GCCATCTG 1 chrIV:5970680-5970760 ( 23) GCCATCTG 1 chrIII:1456318-1456398 ( 15) GCCATCTG 1 chrI:2750896-2750976 ( 63) GCCATCTG 1 chrX:9702911-9702991 ( 44) GCCATCTG 1 chrIII:9178394-9178474 ( 36) GCCATCTG 1 chrIV:11106320-11106400 ( 20) GCCATCTG 1 chrIII:5983939-5984019 ( 25) AACAGATG 1 chrII:11688134-11688214 ( 35) AACAGATG 1 chrII:5418560-5418640 ( 30) AACAGATG 1 chrX:15597570-15597650 ( 25) AACAGATG 1 chrX:2049045-2049125 ( 49) AACAGATG 1 chrII:2092140-2092220 ( 10) AACAGATG 1 chrX:2524933-2525013 ( 69) AACAGATG 1 chrI:9904097-9904177 ( 32) GACATCTG 1 chrII:2770888-2770968 ( 47) AACAGATG 1 chrI:6746618-6746698 ( 55) AACAGATG 1 chrII:11905149-11905229 ( 25) AACAGATG 1 chrV:3256947-3257027 ( 43) AACAGATG 1 chrI:9986793-9986873 ( 16) AACAGATG 1 chrV:13120276-13120356 ( 29) GACATCTG 1 chrI:3908090-3908170 ( 21) GACATCTG 1 chrIII:4523597-4523677 ( 20) AACAGATG 1 chrI:14788782-14788862 ( 59) AACAGATG 1 chrV:13024591-13024671 ( 12) GCCAGATG 1 chrX:7212832-7212912 ( 41) GCCAGATG 1 chrX:16988513-16988593 ( 73) GACAGATG 1 chrII:11794580-11794660 ( 2) GACAGATG 1 chrIII:2234363-2234443 ( 1) ACCATATG 1 chrIII:3543315-3543395 ( 59) GACAGATG 1 chrIV:11867835-11867915 ( 22) GACAGATG 1 chrI:2890392-2890472 ( 49) GACAGATG 1 chrII:3307546-3307626 ( 37) GACAGATG 1 chrIII:5183541-5183621 ( 9) GACAGATG 1 chrII:9059177-9059257 ( 62) GACAGATG 1 chrIII:6479617-6479697 ( 52) GACAGATG 1 chrII:1820894-1820974 ( 35) GACAGATG 1 chrII:2095081-2095161 ( 26) GACAGATG 1 chrI:3959627-3959707 ( 31) GACAGATG 1 chrIV:8722928-8723008 ( 48) GACAGATG 1 chrII:868413-868493 ( 17) GACAGATG 1 chrIV:6471363-6471443 ( 19) GACAGATG 1 chrI:5687635-5687715 ( 38) GACAGATG 1 chrX:10502358-10502438 ( 13) AACATATG 1 chrX:13221515-13221595 ( 19) AGCAGCTG 1 chrX:10613756-10613836 ( 42) AACATATG 1 chrV:3448045-3448125 ( 9) AGCAGCTG 1 chrX:7466816-7466896 ( 36) AACATATG 1 chrII:2137352-2137432 ( 48) GCCATATG 1 chrI:11124811-11124891 ( 37) GACATATG 1 chrIII:870727-870807 ( 23) GACATATG 1 chrII:10784946-10785026 ( 36) GGCAGCTG 1 chrV:13018889-13018969 ( 62) GGCAGCTG 1 chrIII:8298410-8298490 ( 11) GGCAGCTG 1 chrII:3975115-3975195 ( 55) GGCAGCTG 1 chrIV:12582191-12582271 ( 5) AGCAGATG 1 chrIII:6929193-6929273 ( 58) AGCAGATG 1 chrIII:2159347-2159427 ( 43) AGCAGATG 1 chrV:19964777-19964857 ( 3) CCCAGCTG 1 chrII:2093889-2093969 ( 9) AGCAGATG 1 chrI:14067522-14067602 ( 3) AGCAGATG 1 chrIII:3086653-3086733 ( 44) AGCAGATG 1 chrIV:4756143-4756223 ( 12) AGCAGATG 1 chrIII:5501485-5501565 ( 45) GGCATCTG 1 chrII:4640931-4641011 ( 44) AGCAGATG 1 chrI:6489109-6489189 ( 6) AGCAGATG 1 chrI:6724821-6724901 ( 54) AGCAGATG 1 chrX:4972159-4972239 ( 48) CACAGCTG 1 chrX:7209300-7209380 ( 22) CACAGCTG 1 chrX:7502689-7502769 ( 16) GGCAGATG 1 chrX:3471184-3471264 ( 54) GGCAGATG 1 chrI:4703332-4703412 ( 21) GGCAGATG 1 chrI:3603294-3603374 ( 51) GGCAGATG 1 chrIV:13116787-13116867 ( 52) GGCAGATG 1 chrI:960048-960128 ( 49) GGCAGATG 1 chrIV:10190802-10190882 ( 38) GGCAGATG 1 chrIII:4502607-4502687 ( 6) CCCATCTG 1 chrV:14650755-14650835 ( 62) CCCATCTG 1 chrI:8512954-8513034 ( 47) CCCATCTG 1 chrX:6259231-6259311 ( 64) CCCATCTG 1 chrX:4125345-4125425 ( 32) CACATCTG 1 chrV:1572725-1572805 ( 14) CACATCTG 1 chrI:9374031-9374111 ( 27) CACATCTG 1 chrI:2844302-2844382 ( 50) CCCAGATG 1 chrIII:4519560-4519640 ( 49) GGCATATG 1 chrI:9940912-9940992 ( 17) CACAGATG 1 chrIV:3665266-3665346 ( 33) CACAGATG 1 chrII:3957499-3957579 ( 49) CACAGATG 1 chrX:5698419-5698499 ( 2) CACAGATG 1 chrX:10991964-10992044 ( 48) ACCACCTG 1 chrI:3993728-3993808 ( 32) ACCACCTG 1 chrX:8273682-8273762 ( 5) AACACCTG 1 chrI:2749507-2749587 ( 18) AACACCTG 1 chrX:14486602-14486682 ( 17) AACAGGTG 1 chrII:12991361-12991441 ( 53) AACAGGTG 1 chrX:4609800-4609880 ( 46) AACAGGTG 1 chrX:1996181-1996261 ( 52) ATCAGCTG 1 chrV:1575832-1575912 ( 40) GTCAGCTG 1 chrII:7815592-7815672 ( 54) GGCAGGTG 1 chrX:10845143-10845223 ( 28) GGCAGGTG 1 chrV:3449904-3449984 ( 46) CCCACCTG 1 chrV:4525639-4525719 ( 28) CACACCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMCAKMTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.72929 E= 7.2e-153 99 -129 73 -1407 68 77 -56 -452 -1407 205 -1407 -1407 194 -1407 -1407 -1407 -1407 -279 121 69 51 131 -299 -1407 -1407 -1407 -1407 191 -1407 -1407 212 -1407 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMCAKMTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 172 E= 7.2e-153 0.517442 0.098837 0.383721 0.000000 0.418605 0.412791 0.156977 0.011628 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.034884 0.534884 0.430233 0.372093 0.598837 0.029070 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RMCAKMTG MEME-1 regular expression -------------------------------------------------------------------------------- [AG][AC]CA[GT][CA]TG -------------------------------------------------------------------------------- Time 6.22 secs. ******************************************************************************** ******************************************************************************** MOTIF YCTYYYTC MEME-2 width = 8 sites = 56 llr = 415 E-value = 1.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif YCTYYYTC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::3::::: pos.-specific C 3a1645:a probability G :::::::: matrix T 7:6465a: bits 2.1 * * 1.9 * ** 1.7 * ** 1.5 * ** Relative 1.3 * ** Entropy 1.1 ** ***** (10.7 bits) 0.8 ** ***** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTCTTTC consensus C ATCC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTYYYTC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:4703332-4703412 47 1.92e-05 TTTTGGTCAC TCTCTTTC CCTCTTGTTG chrIV:5956823-5956903 28 1.92e-05 TTTGGTTTAT TCTCTTTC CGTTCGGTCA chrI:452732-452812 22 1.92e-05 GTCTTGAGAA TCTCTTTC AATCCGGGGT chrIV:12582191-12582271 17 3.67e-05 CAGATGtctc tctctctc tctttctccc chrIV:1895156-1895236 29 3.67e-05 GATCACActc tctctctc tctctaaccc chrIV:12158084-12158164 41 3.67e-05 CGCAtctctc tctctctc tacctcttct chrX:8273682-8273762 68 3.67e-05 TACAGTCTCC TCTCTCTC TTATT chrV:19964777-19964857 54 3.67e-05 TTTATTATTC TCTCTCTC CTTCTCCTAT chrX:12689638-12689718 72 3.67e-05 GTGACCTCTC TCTCTCTC T chrIV:12685957-12686037 30 3.67e-05 CAGTCCCCTC TCTCTCTC TCTGTCTTTC chrI:9904097-9904177 58 3.67e-05 TAATACGGTC TCTCTCTC TCTTCGCTCC chrII:2051628-2051708 5 3.67e-05 CTCT TCTCTCTC ATCTCCCATC chrII:4577563-4577643 51 5.41e-05 ACATACGCTC TCTCCTTC TTCCGGTCAA chrI:2750896-2750976 51 5.41e-05 ttcttcttct tctccttc ttcGGCCATC chrI:6724821-6724901 46 5.41e-05 CAATACTATC TCTCCTTC AGCAGATGGC chrX:5995846-5995926 28 1.24e-04 CTCCATTGCC TCTTTTTC TCCTGATGGT chrIII:1567600-1567680 52 1.24e-04 TACCCAATCT CCTCTCTC ACTACGTATT chrII:7813533-7813613 48 1.24e-04 CTGTTCCTAC CCTCTCTC AACCAGCTGG chrIV:17375792-17375872 30 1.24e-04 CGTCTGCTGT TCTTTTTC TTTTCACTGC chrII:8748845-8748925 53 1.24e-04 CACCATCTGC TCTTTTTC CCATTCATCC chrX:16988513-16988593 2 1.44e-04 C TCTTTCTC TCTTCATCTT chrV:1555717-1555797 15 1.44e-04 ATGGTAAAGA TCTTTCTC TATGATCTCT chrII:11308814-11308894 59 1.44e-04 CTTTTCAATT TCTTTCTC TACCCACACT chrX:13143339-13143419 66 1.62e-04 ACCATCTGCT TCACTTTC CCTTCAG chrV:14650755-14650835 42 1.62e-04 AACTAATTAA TCACTTTC CAACTATCTG chrII:11889509-11889589 25 1.95e-04 GGCCATCTGC CCTCCTTC CCTTTCCCTC chrIII:179307-179387 70 1.95e-04 CGTCACCAAT CCTCCTTC TTT chrI:8507746-8507826 16 1.95e-04 CTGCGACTCC CCTCCTTC ACATGCTATT chrX:14486602-14486682 34 1.95e-04 GCACTTCTCA CCTCCTTC CATCTGTTCC chrI:5820523-5820603 60 1.95e-04 TTCTGACCTG TCACTCTC TTACCCAGTT chrII:8052290-8052370 61 1.95e-04 CGGGTCACTC TCACTCTC ATATGTACTA chrX:4972159-4972239 35 2.29e-04 CGTTCGAGAA TCTTCTTC TGTTTCACAG chrIII:5940075-5940155 44 2.46e-04 ATTGTCCCCT TCTTCCTC ATCATTTCTT chrX:9989158-9989238 8 2.46e-04 CGCGTCC TCTTCCTC GGCTTGCCTA chrII:10986848-10986928 49 2.46e-04 ATAATACATC TCTTCCTC ATGAAAATGA chrI:2312378-2312458 43 2.82e-04 TGGTATTGCG CCTTTTTC TATCGATTTT chrI:2738369-2738449 8 2.82e-04 CAGATGT CCTTTTTC TATTACCTAC chrII:3957499-3957579 12 3.15e-04 CTCGTTTCCC TCACCCTC ACTCATTCAC chrI:6280434-6280514 13 3.15e-04 CTTTGTAAAC CCTTTCTC TAACAGACAC chrII:9063549-9063629 6 3.15e-04 AAGTC TCACCCTC GCCAACCATT chrIV:175848-175928 62 3.49e-04 GTCTGTTGTG TCCCTTTC CCTTTTCTCA chrI:3338402-3338482 23 3.49e-04 TCTGAGTCTC CCACTTTC CTGCACTCTC chrI:447716-447796 9 3.49e-04 CTTTCTTT CCACTTTC TGACGTTCAA chrII:1537553-1537633 53 4.01e-04 CTCATTCTGC TCATTTTC TCTAGTAATG chrII:11688134-11688214 58 4.37e-04 TGCGTCCTCC CCTTCTTC AATTGGGTTT chrI:11589074-11589154 8 4.84e-04 CCATCTG TCCCCTTC CCACCACGAT chrIII:1458328-1458408 71 5.31e-04 GTACACAGAT TCATCTTC GT chrI:8281157-8281237 2 5.31e-04 G TCATCTTC TGCTCAATTA chrX:1801127-1801207 38 5.31e-04 GTACCATCTG CCACCCTC CGCGCACTGG chrI:9940912-9940992 59 6.16e-04 TCATTCCTCC TCCTTTTC TTCCACAACG chrI:13501043-13501123 66 6.16e-04 GCACATCTGT CCCCTCTC ACACAGT chrI:3959627-3959707 2 6.16e-04 T CCCCTCTC CGGGATGAAC chrX:2375101-2375181 17 6.51e-04 TGCCCTCTTG CCATTCTC CAAACGTGAC chrV:153998-154078 34 6.65e-04 GCTCATAGGA CCCCCTTC GTTTTTCATG chrIII:12611556-12611636 1 6.65e-04 . CCCCCTTC CAACAACTGA chrX:11675757-11675837 20 7.13e-04 ACATGGGTGC CCATCTTC TTGCGCGTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTYYYTC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:4703332-4703412 1.9e-05 46_[+2]_26 chrIV:5956823-5956903 1.9e-05 27_[+2]_45 chrI:452732-452812 1.9e-05 21_[+2]_51 chrIV:12582191-12582271 3.7e-05 16_[+2]_56 chrIV:1895156-1895236 3.7e-05 28_[+2]_44 chrIV:12158084-12158164 3.7e-05 40_[+2]_32 chrX:8273682-8273762 3.7e-05 67_[+2]_5 chrV:19964777-19964857 3.7e-05 53_[+2]_19 chrX:12689638-12689718 3.7e-05 71_[+2]_1 chrIV:12685957-12686037 3.7e-05 29_[+2]_43 chrI:9904097-9904177 3.7e-05 57_[+2]_15 chrII:2051628-2051708 3.7e-05 4_[+2]_68 chrII:4577563-4577643 5.4e-05 50_[+2]_22 chrI:2750896-2750976 5.4e-05 50_[+2]_22 chrI:6724821-6724901 5.4e-05 45_[+2]_27 chrX:5995846-5995926 0.00012 27_[+2]_45 chrIII:1567600-1567680 0.00012 51_[+2]_21 chrII:7813533-7813613 0.00012 47_[+2]_25 chrIV:17375792-17375872 0.00012 29_[+2]_43 chrII:8748845-8748925 0.00012 52_[+2]_20 chrX:16988513-16988593 0.00014 1_[+2]_71 chrV:1555717-1555797 0.00014 14_[+2]_58 chrII:11308814-11308894 0.00014 58_[+2]_14 chrX:13143339-13143419 0.00016 65_[+2]_7 chrV:14650755-14650835 0.00016 41_[+2]_31 chrII:11889509-11889589 0.0002 24_[+2]_48 chrIII:179307-179387 0.0002 69_[+2]_3 chrI:8507746-8507826 0.0002 15_[+2]_57 chrX:14486602-14486682 0.0002 33_[+2]_39 chrI:5820523-5820603 0.0002 59_[+2]_13 chrII:8052290-8052370 0.0002 60_[+2]_12 chrX:4972159-4972239 0.00023 34_[+2]_38 chrIII:5940075-5940155 0.00025 43_[+2]_29 chrX:9989158-9989238 0.00025 7_[+2]_65 chrII:10986848-10986928 0.00025 48_[+2]_24 chrI:2312378-2312458 0.00028 42_[+2]_30 chrI:2738369-2738449 0.00028 7_[+2]_65 chrII:3957499-3957579 0.00032 11_[+2]_61 chrI:6280434-6280514 0.00032 12_[+2]_60 chrII:9063549-9063629 0.00032 5_[+2]_67 chrIV:175848-175928 0.00035 61_[+2]_11 chrI:3338402-3338482 0.00035 22_[+2]_50 chrI:447716-447796 0.00035 8_[+2]_64 chrII:1537553-1537633 0.0004 52_[+2]_20 chrII:11688134-11688214 0.00044 57_[+2]_15 chrI:11589074-11589154 0.00048 7_[+2]_65 chrIII:1458328-1458408 0.00053 70_[+2]_2 chrI:8281157-8281237 0.00053 1_[+2]_71 chrX:1801127-1801207 0.00053 37_[+2]_35 chrI:9940912-9940992 0.00062 58_[+2]_14 chrI:13501043-13501123 0.00062 65_[+2]_7 chrI:3959627-3959707 0.00062 1_[+2]_71 chrX:2375101-2375181 0.00065 16_[+2]_56 chrV:153998-154078 0.00067 33_[+2]_39 chrIII:12611556-12611636 0.00067 [+2]_72 chrX:11675757-11675837 0.00071 19_[+2]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTYYYTC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YCTYYYTC width=8 seqs=56 chrI:4703332-4703412 ( 47) TCTCTTTC 1 chrIV:5956823-5956903 ( 28) TCTCTTTC 1 chrI:452732-452812 ( 22) TCTCTTTC 1 chrIV:12582191-12582271 ( 17) TCTCTCTC 1 chrIV:1895156-1895236 ( 29) TCTCTCTC 1 chrIV:12158084-12158164 ( 41) TCTCTCTC 1 chrX:8273682-8273762 ( 68) TCTCTCTC 1 chrV:19964777-19964857 ( 54) TCTCTCTC 1 chrX:12689638-12689718 ( 72) TCTCTCTC 1 chrIV:12685957-12686037 ( 30) TCTCTCTC 1 chrI:9904097-9904177 ( 58) TCTCTCTC 1 chrII:2051628-2051708 ( 5) TCTCTCTC 1 chrII:4577563-4577643 ( 51) TCTCCTTC 1 chrI:2750896-2750976 ( 51) TCTCCTTC 1 chrI:6724821-6724901 ( 46) TCTCCTTC 1 chrX:5995846-5995926 ( 28) TCTTTTTC 1 chrIII:1567600-1567680 ( 52) CCTCTCTC 1 chrII:7813533-7813613 ( 48) CCTCTCTC 1 chrIV:17375792-17375872 ( 30) TCTTTTTC 1 chrII:8748845-8748925 ( 53) TCTTTTTC 1 chrX:16988513-16988593 ( 2) TCTTTCTC 1 chrV:1555717-1555797 ( 15) TCTTTCTC 1 chrII:11308814-11308894 ( 59) TCTTTCTC 1 chrX:13143339-13143419 ( 66) TCACTTTC 1 chrV:14650755-14650835 ( 42) TCACTTTC 1 chrII:11889509-11889589 ( 25) CCTCCTTC 1 chrIII:179307-179387 ( 70) CCTCCTTC 1 chrI:8507746-8507826 ( 16) CCTCCTTC 1 chrX:14486602-14486682 ( 34) CCTCCTTC 1 chrI:5820523-5820603 ( 60) TCACTCTC 1 chrII:8052290-8052370 ( 61) TCACTCTC 1 chrX:4972159-4972239 ( 35) TCTTCTTC 1 chrIII:5940075-5940155 ( 44) TCTTCCTC 1 chrX:9989158-9989238 ( 8) TCTTCCTC 1 chrII:10986848-10986928 ( 49) TCTTCCTC 1 chrI:2312378-2312458 ( 43) CCTTTTTC 1 chrI:2738369-2738449 ( 8) CCTTTTTC 1 chrII:3957499-3957579 ( 12) TCACCCTC 1 chrI:6280434-6280514 ( 13) CCTTTCTC 1 chrII:9063549-9063629 ( 6) TCACCCTC 1 chrIV:175848-175928 ( 62) TCCCTTTC 1 chrI:3338402-3338482 ( 23) CCACTTTC 1 chrI:447716-447796 ( 9) CCACTTTC 1 chrII:1537553-1537633 ( 53) TCATTTTC 1 chrII:11688134-11688214 ( 58) CCTTCTTC 1 chrI:11589074-11589154 ( 8) TCCCCTTC 1 chrIII:1458328-1458408 ( 71) TCATCTTC 1 chrI:8281157-8281237 ( 2) TCATCTTC 1 chrX:1801127-1801207 ( 38) CCACCCTC 1 chrI:9940912-9940992 ( 59) TCCTTTTC 1 chrI:13501043-13501123 ( 66) CCCCTCTC 1 chrI:3959627-3959707 ( 2) CCCCTCTC 1 chrX:2375101-2375181 ( 17) CCATTCTC 1 chrV:153998-154078 ( 34) CCCCCTTC 1 chrIII:12611556-12611636 ( 1) CCCCCTTC 1 chrX:11675757-11675837 ( 20) CCATCTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTYYYTC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.56875 E= 1.0e+000 -1245 49 -1245 131 -1245 205 -1245 -1245 -6 -95 -1245 123 -1245 141 -1245 42 -1245 63 -1245 123 -1245 94 -1245 100 -1245 -1245 -1245 191 -1245 205 -1245 -1245 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTYYYTC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 1.0e+000 0.000000 0.339286 0.000000 0.660714 0.000000 1.000000 0.000000 0.000000 0.250000 0.125000 0.000000 0.625000 0.000000 0.642857 0.000000 0.357143 0.000000 0.375000 0.000000 0.625000 0.000000 0.464286 0.000000 0.535714 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCTYYYTC MEME-2 regular expression -------------------------------------------------------------------------------- [TC]C[TA][CT][TC][TC]TC -------------------------------------------------------------------------------- Time 9.64 secs. ******************************************************************************** ******************************************************************************** MOTIF ACAGAYGG MEME-3 width = 8 sites = 29 llr = 244 E-value = 5.9e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACAGAYGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 7:a:62:: pos.-specific C :a:::2:: probability G 3::a21aa matrix T ::::24:: bits 2.1 * * ** 1.9 *** ** 1.7 *** ** 1.5 *** ** Relative 1.3 *** ** Entropy 1.1 **** ** (12.2 bits) 0.8 **** ** 0.6 ***** ** 0.4 ***** ** 0.2 ******** 0.0 -------- Multilevel ACAGATGG consensus G GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAGAYGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:4523597-4523677 28 1.40e-05 CAAACAGATG ACAGATGG CCTATGATTT chrIV:3843287-3843367 17 1.40e-05 ATCGTAGGTG ACAGATGG AGGGACAAGT chrV:3448045-3448125 36 2.67e-05 ACCTCTGCGA ACAGACGG GATGGAACAA chrV:14793204-14793284 2 2.67e-05 A ACAGACGG TGGTGCATAA chrX:2524933-2525013 38 2.67e-05 GAAATCTGGA ACAGACGG CCCGTTGCGT chrII:4138306-4138386 70 2.67e-05 AGCTGGGGTG ACAGACGG ACG chrII:8415157-8415237 31 2.67e-05 GTGTGAGGCG ACAGACGG TGTGTGATTG chrV:1555717-1555797 1 3.91e-05 . GCAGATGG TAAAGATCTT chrX:1222547-1222627 16 3.91e-05 AATGGTGTGT GCAGATGG TGCGCGCGAG chrI:6080325-6080405 48 3.91e-05 AACATACCCG GCAGATGG GTGAAGAATA chrII:2137352-2137432 21 3.91e-05 GACCCCGACA GCAGATGG CAAATATTAT chrI:14788782-14788862 19 3.91e-05 GGAGGGAACA GCAGATGG TCGTATTTTA chrIII:3086653-3086733 17 5.16e-05 TTATAAAATG ACAGGTGG CCCCACGGAC chrII:6411718-6411798 43 6.52e-05 TGTCAAAATG ACAGAAGG CCGGAAGATG chrI:452732-452812 41 6.52e-05 ATCCGGGGTG ACAGAAGG TGTCATATTG chrIII:5183541-5183621 58 6.52e-05 GCACACATGC ACAGAAGG CGTAAATACT chrX:15273456-15273536 50 7.73e-05 TGCGCCATCA ACAGAGGG TGCCTATTCA chrX:10845143-10845223 2 7.73e-05 A ACAGAGGG AGGGTTGCTC chrII:2996265-2996345 13 1.03e-04 TCTGTCAACG ACAGTTGG TGGGGTGAGA chrIV:11106320-11106400 34 1.03e-04 TCTGTCAACG ACAGTTGG TGGGGTGAGA chrI:2966482-2966562 39 1.14e-04 TGAGAAGAAG ACAGGCGG CTGGGTGCAA chrIII:5983939-5984019 8 1.25e-04 TACAGGG GCAGGTGG TACGAAGAAA chrX:6259231-6259311 32 1.25e-04 CAGGTGTTGA GCAGGTGG CAGTTATCGG chrIV:12546011-12546091 1 1.60e-04 . ACAGGAGG TTGCAGCCTC chrX:11675757-11675837 36 1.84e-04 TCTTGCGCGT ACAGGGGG CCTCCGGTCT chrII:2139060-2139140 66 1.84e-04 CTCACTGCTC ACAGTCGG GAGAGCA chrII:12984855-12984935 9 1.97e-04 ATCTGTCA GCAGTTGG GGCACGATTC chrI:1839609-1839689 48 2.33e-04 CTATAGAGTA ACAGTGGG ATAAGCGTGT chrI:9940912-9940992 3 2.44e-04 AC GCAGGAGG TACGCACACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAGAYGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:4523597-4523677 1.4e-05 27_[+3]_45 chrIV:3843287-3843367 1.4e-05 16_[+3]_56 chrV:3448045-3448125 2.7e-05 35_[+3]_37 chrV:14793204-14793284 2.7e-05 1_[+3]_71 chrX:2524933-2525013 2.7e-05 37_[+3]_35 chrII:4138306-4138386 2.7e-05 69_[+3]_3 chrII:8415157-8415237 2.7e-05 30_[+3]_42 chrV:1555717-1555797 3.9e-05 [+3]_72 chrX:1222547-1222627 3.9e-05 15_[+3]_57 chrI:6080325-6080405 3.9e-05 47_[+3]_25 chrII:2137352-2137432 3.9e-05 20_[+3]_52 chrI:14788782-14788862 3.9e-05 18_[+3]_54 chrIII:3086653-3086733 5.2e-05 16_[+3]_56 chrII:6411718-6411798 6.5e-05 42_[+3]_30 chrI:452732-452812 6.5e-05 40_[+3]_32 chrIII:5183541-5183621 6.5e-05 57_[+3]_15 chrX:15273456-15273536 7.7e-05 49_[+3]_23 chrX:10845143-10845223 7.7e-05 1_[+3]_71 chrII:2996265-2996345 0.0001 12_[+3]_60 chrIV:11106320-11106400 0.0001 33_[+3]_39 chrI:2966482-2966562 0.00011 38_[+3]_34 chrIII:5983939-5984019 0.00013 7_[+3]_65 chrX:6259231-6259311 0.00013 31_[+3]_41 chrIV:12546011-12546091 0.00016 [+3]_72 chrX:11675757-11675837 0.00018 35_[+3]_37 chrII:2139060-2139140 0.00018 65_[+3]_7 chrII:12984855-12984935 0.0002 8_[+3]_64 chrI:1839609-1839689 0.00023 47_[+3]_25 chrI:9940912-9940992 0.00024 2_[+3]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAGAYGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACAGAYGG width=8 seqs=29 chrIII:4523597-4523677 ( 28) ACAGATGG 1 chrIV:3843287-3843367 ( 17) ACAGATGG 1 chrV:3448045-3448125 ( 36) ACAGACGG 1 chrV:14793204-14793284 ( 2) ACAGACGG 1 chrX:2524933-2525013 ( 38) ACAGACGG 1 chrII:4138306-4138386 ( 70) ACAGACGG 1 chrII:8415157-8415237 ( 31) ACAGACGG 1 chrV:1555717-1555797 ( 1) GCAGATGG 1 chrX:1222547-1222627 ( 16) GCAGATGG 1 chrI:6080325-6080405 ( 48) GCAGATGG 1 chrII:2137352-2137432 ( 21) GCAGATGG 1 chrI:14788782-14788862 ( 19) GCAGATGG 1 chrIII:3086653-3086733 ( 17) ACAGGTGG 1 chrII:6411718-6411798 ( 43) ACAGAAGG 1 chrI:452732-452812 ( 41) ACAGAAGG 1 chrIII:5183541-5183621 ( 58) ACAGAAGG 1 chrX:15273456-15273536 ( 50) ACAGAGGG 1 chrX:10845143-10845223 ( 2) ACAGAGGG 1 chrII:2996265-2996345 ( 13) ACAGTTGG 1 chrIV:11106320-11106400 ( 34) ACAGTTGG 1 chrI:2966482-2966562 ( 39) ACAGGCGG 1 chrIII:5983939-5984019 ( 8) GCAGGTGG 1 chrX:6259231-6259311 ( 32) GCAGGTGG 1 chrIV:12546011-12546091 ( 1) ACAGGAGG 1 chrX:11675757-11675837 ( 36) ACAGGGGG 1 chrII:2139060-2139140 ( 66) ACAGTCGG 1 chrII:12984855-12984935 ( 9) GCAGTTGG 1 chrI:1839609-1839689 ( 48) ACAGTGGG 1 chrI:9940912-9940992 ( 3) GCAGGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAGAYGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.985 E= 5.9e+000 140 -1150 43 -1150 -1150 205 -1150 -1150 194 -1150 -1150 -1150 -1150 -1150 211 -1150 117 -1150 6 -63 -59 0 -74 75 -1150 -1150 211 -1150 -1150 -1150 211 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAGAYGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 5.9e+000 0.689655 0.000000 0.310345 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.586207 0.000000 0.241379 0.172414 0.172414 0.241379 0.137931 0.448276 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACAGAYGG MEME-3 regular expression -------------------------------------------------------------------------------- [AG]CAG[AG][TC]GG -------------------------------------------------------------------------------- Time 14.42 secs. ******************************************************************************** ******************************************************************************** MOTIF TGACGTCA MEME-4 width = 8 sites = 10 llr = 105 E-value = 5.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGACGTCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a:::3a pos.-specific C :::a::7: probability G :a::a::: matrix T a::::a:: bits 2.1 * ** 1.9 ****** * 1.7 ****** * 1.5 ****** * Relative 1.3 ****** * Entropy 1.1 ******** (15.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGACGTCA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:179307-179387 57 1.51e-05 AGGCCATTAA TGACGTCA CCAATCCTCC chrIII:2234363-2234443 64 1.51e-05 ACGTGGCCTA TGACGTCA TAAATGCAG chrII:937465-937545 25 1.51e-05 ACTGAGAAGG TGACGTCA TTTCTGTACC chrII:3310108-3310188 60 1.51e-05 CAAAGAATTG TGACGTCA TACTCATAAT chrIV:4448472-4448552 6 1.51e-05 CGTAC TGACGTCA TAAAATTAAG chrII:10784421-10784501 25 1.51e-05 CCTGCGCCGA TGACGTCA TCAGAGGTTG chrX:15115889-15115969 52 1.51e-05 TCTGTTGGTA TGACGTCA CATCAATTGT chrV:16742296-16742376 62 3.12e-05 GTCGTTTTTA TGACGTAA CGTCTCCCGT chrV:16094989-16095069 23 3.12e-05 ATACACTTTT TGACGTAA CCTCTTTTTG chrI:9659180-9659260 43 3.12e-05 CTGTATGGGA TGACGTAA TAAACCATCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:179307-179387 1.5e-05 56_[+4]_16 chrIII:2234363-2234443 1.5e-05 63_[+4]_9 chrII:937465-937545 1.5e-05 24_[+4]_48 chrII:3310108-3310188 1.5e-05 59_[+4]_13 chrIV:4448472-4448552 1.5e-05 5_[+4]_67 chrII:10784421-10784501 1.5e-05 24_[+4]_48 chrX:15115889-15115969 1.5e-05 51_[+4]_21 chrV:16742296-16742376 3.1e-05 61_[+4]_11 chrV:16094989-16095069 3.1e-05 22_[+4]_50 chrI:9659180-9659260 3.1e-05 42_[+4]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGACGTCA width=8 seqs=10 chrIII:179307-179387 ( 57) TGACGTCA 1 chrIII:2234363-2234443 ( 64) TGACGTCA 1 chrII:937465-937545 ( 25) TGACGTCA 1 chrII:3310108-3310188 ( 60) TGACGTCA 1 chrIV:4448472-4448552 ( 6) TGACGTCA 1 chrII:10784421-10784501 ( 25) TGACGTCA 1 chrX:15115889-15115969 ( 52) TGACGTCA 1 chrV:16742296-16742376 ( 62) TGACGTAA 1 chrV:16094989-16095069 ( 23) TGACGTAA 1 chrI:9659180-9659260 ( 43) TGACGTAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0846 E= 5.7e+002 -997 -997 -997 190 -997 -997 211 -997 194 -997 -997 -997 -997 205 -997 -997 -997 -997 211 -997 -997 -997 -997 190 20 153 -997 -997 194 -997 -997 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 5.7e+002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.300000 0.700000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-4 regular expression -------------------------------------------------------------------------------- TGACGT[CA]A -------------------------------------------------------------------------------- Time 17.74 secs. ******************************************************************************** ******************************************************************************** MOTIF GAAAAKGA MEME-5 width = 8 sites = 17 llr = 158 E-value = 1.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAAAAKGA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a9a91:a pos.-specific C 2::::::: probability G 8:1:16a: matrix T :::::4:: bits 2.1 * 1.9 * * ** 1.7 **** ** 1.5 ***** ** Relative 1.3 ***** ** Entropy 1.1 ***** ** (13.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAAAAGGA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAAKGA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:16042493-16042573 61 1.46e-05 AAAGGCCTTG GAAAAGGA GGTGCCAAGC chrIV:12549193-12549273 72 1.46e-05 TGTTGCGATG GAAAAGGA C chrX:14779297-14779377 65 1.46e-05 CGGTCGTCTC GAAAAGGA GATAGTTG chrII:2770888-2770968 33 1.46e-05 CACAAATAAA GAAAAGGA ACATTGAACA chrI:2750896-2750976 23 1.46e-05 ATAATCGAGT GAAAAGGA CAATGtcttc chrIV:3843287-3843367 43 1.46e-05 GTACTTGGAA GAAAAGGA CAAAAGATTC chrX:9933565-9933645 20 3.16e-05 AACGAAGATT GAAAATGA TGACTGGTGC chrI:447716-447796 57 3.16e-05 CGGGGCAATT GAAAATGA GAACAAAAGG chrII:10986848-10986928 59 3.16e-05 TCTTCCTCAT GAAAATGA TTCATTTTCG chrIII:12579433-12579513 44 3.16e-05 TAAAAAGAAG GAAAATGA GATGGGGGAG chrIV:6471363-6471443 30 3.16e-05 ACAGATGGTA GAAAATGA AGACAGTGTG chrIV:178731-178811 61 4.69e-05 TCTCGTAAAC CAAAAGGA AAAGAGACCA chrIV:8722928-8723008 14 4.69e-05 TTAAGACTGT CAAAAGGA TTGGGAAACA chrV:9239838-9239918 50 6.47e-05 GTGCAAATAC CAAAATGA GCGGTAATCG chrII:4640931-4641011 28 8.11e-05 AGGAATCAGA GAAAAAGA GAGAAATGAG chrIV:12546011-12546091 36 1.07e-04 TACCTACCAA GAAAGGGA GGGATTACAC chrI:2844302-2844382 17 1.07e-04 GAGAGAGAAA GAGAAGGA GACATGCACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAAKGA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:16042493-16042573 1.5e-05 60_[+5]_12 chrIV:12549193-12549273 1.5e-05 71_[+5]_1 chrX:14779297-14779377 1.5e-05 64_[+5]_8 chrII:2770888-2770968 1.5e-05 32_[+5]_40 chrI:2750896-2750976 1.5e-05 22_[+5]_50 chrIV:3843287-3843367 1.5e-05 42_[+5]_30 chrX:9933565-9933645 3.2e-05 19_[+5]_53 chrI:447716-447796 3.2e-05 56_[+5]_16 chrII:10986848-10986928 3.2e-05 58_[+5]_14 chrIII:12579433-12579513 3.2e-05 43_[+5]_29 chrIV:6471363-6471443 3.2e-05 29_[+5]_43 chrIV:178731-178811 4.7e-05 60_[+5]_12 chrIV:8722928-8723008 4.7e-05 13_[+5]_59 chrV:9239838-9239918 6.5e-05 49_[+5]_23 chrII:4640931-4641011 8.1e-05 27_[+5]_45 chrIV:12546011-12546091 0.00011 35_[+5]_37 chrI:2844302-2844382 0.00011 16_[+5]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAAKGA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAAAAKGA width=8 seqs=17 chrV:16042493-16042573 ( 61) GAAAAGGA 1 chrIV:12549193-12549273 ( 72) GAAAAGGA 1 chrX:14779297-14779377 ( 65) GAAAAGGA 1 chrII:2770888-2770968 ( 33) GAAAAGGA 1 chrI:2750896-2750976 ( 23) GAAAAGGA 1 chrIV:3843287-3843367 ( 43) GAAAAGGA 1 chrX:9933565-9933645 ( 20) GAAAATGA 1 chrI:447716-447796 ( 57) GAAAATGA 1 chrII:10986848-10986928 ( 59) GAAAATGA 1 chrIII:12579433-12579513 ( 44) GAAAATGA 1 chrIV:6471363-6471443 ( 30) GAAAATGA 1 chrIV:178731-178811 ( 61) CAAAAGGA 1 chrIV:8722928-8723008 ( 14) CAAAAGGA 1 chrV:9239838-9239918 ( 50) CAAAATGA 1 chrII:4640931-4641011 ( 28) GAAAAAGA 1 chrIV:12546011-12546091 ( 36) GAAAGGGA 1 chrI:2844302-2844382 ( 17) GAGAAGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAAKGA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8621 E= 1.1e+002 -1073 -45 183 -1073 194 -1073 -1073 -1073 185 -1073 -197 -1073 194 -1073 -1073 -1073 185 -1073 -197 -1073 -214 -1073 135 40 -1073 -1073 211 -1073 194 -1073 -1073 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAAKGA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 1.1e+002 0.000000 0.176471 0.823529 0.000000 1.000000 0.000000 0.000000 0.000000 0.941176 0.000000 0.058824 0.000000 1.000000 0.000000 0.000000 0.000000 0.941176 0.000000 0.058824 0.000000 0.058824 0.000000 0.588235 0.352941 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAAKGA MEME-5 regular expression -------------------------------------------------------------------------------- GAAAA[GT]GA -------------------------------------------------------------------------------- Time 21.02 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:5687635-5687715 1.09e-03 38_[+3(1.40e-05)]_34 chrIV:6471363-6471443 4.09e-05 19_[+3(1.40e-05)]_2_[+5(3.16e-05)]_\ 43 chrI:14788782-14788862 2.29e-03 18_[+3(3.91e-05)]_33_[+3(1.40e-05)]_\ 13 chrII:2139060-2139140 6.59e-03 47_[+1(6.92e-05)]_25 chrV:13021702-13021782 2.52e-02 54_[+1(6.92e-05)]_18 chrIV:11106320-11106400 9.99e-03 80 chrIV:10190802-10190882 5.15e-03 38_[+3(3.91e-05)]_34 chrII:868413-868493 6.74e-04 17_[+3(1.40e-05)]_55 chrIV:3843287-3843367 1.07e-05 16_[+3(1.40e-05)]_18_[+5(1.46e-05)]_\ 22_[+1(6.92e-05)] chrX:11673533-11673613 6.85e-02 8_[+1(6.92e-05)]_64 chrIII:12611556-12611636 1.27e-02 41_[+1(6.92e-05)]_22_[+1(8.62e-05)]_\ 1 chrX:7209300-7209380 8.78e-02 80 chrIV:8722928-8723008 1.95e-04 13_[+5(4.69e-05)]_27_[+3(1.40e-05)]_\ 24 chrIII:4523597-4523677 9.16e-04 27_[+3(1.40e-05)]_45 chrX:1801127-1801207 5.14e-02 29_[+1(6.92e-05)]_43 chrX:15115889-15115969 3.20e-03 37_[+1(8.62e-05)]_6_[+4(1.51e-05)]_\ 21 chrI:3959627-3959707 4.19e-05 31_[+3(1.40e-05)]_41 chrI:9158260-9158340 2.80e-02 64_[+1(6.92e-05)]_8 chrIV:17277766-17277846 4.45e-02 49_[+1(6.92e-05)]_23 chrI:9659180-9659260 3.82e-04 42_[+4(3.12e-05)]_3_[+1(6.92e-05)]_\ 19 chrX:10503542-10503622 1.18e-01 20_[+1(6.92e-05)]_52 chrII:2095081-2095161 2.62e-03 26_[+3(1.40e-05)]_46 chrII:1820894-1820974 8.47e-03 35_[+3(1.40e-05)]_37 chrIV:11743968-11744048 4.53e-02 50_[+1(6.92e-05)]_22 chrI:3908090-3908170 3.58e-02 80 chrX:10424929-10425009 4.88e-01 80 chrV:13120276-13120356 4.63e-02 80 chrII:8415157-8415237 3.09e-02 30_[+3(2.67e-05)]_42 chrIII:6479617-6479697 1.97e-03 52_[+3(1.40e-05)]_20 chrII:312377-312457 9.08e-01 80 chrV:9239838-9239918 2.41e-01 49_[+5(6.47e-05)]_23 chrIII:9178394-9178474 1.11e-01 80 chrIV:16047649-16047729 3.23e-03 14_[+1(4.04e-05)]_58 chrIII:12579433-12579513 4.39e-03 43_[+5(3.16e-05)]_29 chrV:153998-154078 6.15e-02 16_[+1(6.92e-05)]_56 chrII:9059177-9059257 2.70e-02 80 chrII:8748845-8748925 9.58e-03 43_[+1(6.92e-05)]_29 chrI:9986793-9986873 1.77e-03 16_[+3(1.40e-05)]_56 chrII:2996265-2996345 2.32e-02 80 chrV:3256947-3257027 2.13e-03 43_[+3(1.40e-05)]_29 chrI:2738369-2738449 5.05e-02 80 chrX:9702911-9702991 5.54e-02 80 chrX:7466816-7466896 6.00e-02 80 chrV:6680620-6680700 4.03e-01 80 chrIII:6605616-6605696 9.01e-02 4_[+1(8.62e-05)]_34_[+1(6.92e-05)]_\ 26 chrV:9664073-9664153 1.54e-01 35_[+1(6.92e-05)]_37 chrIII:5183541-5183621 4.30e-03 57_[+3(6.52e-05)]_15 chrII:11308814-11308894 1.41e-02 38_[+1(6.92e-05)]_34 chrX:14327534-14327614 1.55e-02 52_[+1(2.83e-05)]_20 chrII:10784421-10784501 4.11e-02 24_[+4(1.51e-05)]_48 chrIV:4448472-4448552 2.58e-04 5_[+4(1.51e-05)]_42_[+1(2.83e-05)]_\ 17 chrX:6259231-6259311 2.71e-02 80 chrII:3307546-3307626 9.89e-04 37_[+3(1.40e-05)]_35 chrII:3975115-3975195 2.38e-02 80 chrII:11905149-11905229 2.51e-03 25_[+3(1.40e-05)]_47 chrIV:12854506-12854586 3.26e-02 23_[+1(1.36e-05)]_49 chrI:6724821-6724901 6.65e-04 45_[+2(5.41e-05)]_1_[+3(3.91e-05)]_\ 18 chrI:6746618-6746698 2.78e-03 55_[+3(1.40e-05)]_17 chrI:9374031-9374111 2.45e-01 80 chrI:11588156-11588236 2.21e-02 8_[+1(6.92e-05)]_64 chrII:2137352-2137432 6.57e-03 20_[+3(3.91e-05)]_52 chrI:2750896-2750976 1.40e-04 22_[+5(1.46e-05)]_20_[+2(5.41e-05)]_\ 22 chrII:8052290-8052370 2.02e-02 11_[+1(6.92e-05)]_61 chrII:2770888-2770968 4.50e-04 32_[+5(1.46e-05)]_40 chrI:6489109-6489189 1.23e-03 6_[+3(3.91e-05)]_66 chrII:2051628-2051708 3.06e-02 4_[+2(3.67e-05)]_10_[+2(6.99e-05)]_\ 50 chrII:1536093-1536173 4.40e-02 48_[+1(4.04e-05)]_24 chrII:10986848-10986928 2.10e-02 58_[+5(3.16e-05)]_14 chrI:2890392-2890472 9.29e-04 49_[+3(1.40e-05)]_23 chrI:960048-960128 3.56e-03 49_[+3(3.91e-05)]_23 chrI:447716-447796 1.95e-05 25_[+1(6.92e-05)]_23_[+5(3.16e-05)]_\ 3_[+5(4.69e-05)]_5 chrI:5411420-5411500 9.65e-02 80 chrII:11887885-11887965 6.82e-01 80 chrII:2145936-2146016 4.91e-02 72_[+1(6.92e-05)] chrII:4640931-4641011 6.34e-04 27_[+5(8.11e-05)]_9_[+3(3.91e-05)]_\ 28 chrIII:5501485-5501565 5.02e-01 80 chrX:11211493-11211573 1.26e-02 8_[+1(6.92e-05)]_64 chrII:1537553-1537633 6.73e-04 9_[+1(1.36e-05)]_63 chrII:4138306-4138386 3.27e-03 69_[+3(2.67e-05)]_3 chrI:9910677-9910757 3.87e-02 8_[+1(6.92e-05)]_64 chrIV:7168113-7168193 8.14e-01 80 chrI:9904097-9904177 8.89e-04 55_[+2(3.67e-05)]_17 chrIII:8298410-8298490 3.58e-02 80 chrIV:17375792-17375872 2.17e-01 80 chrII:7813533-7813613 4.22e-03 56_[+1(1.36e-05)]_16 chrIV:17215224-17215304 7.41e-04 40_[+1(6.92e-05)]_32 chrII:3310108-3310188 4.94e-03 59_[+4(1.51e-05)]_13 chrX:2524933-2525013 5.43e-03 37_[+3(2.67e-05)]_35 chrI:11589074-11589154 2.89e-02 32_[+1(6.92e-05)]_40 chrX:7212832-7212912 1.83e-02 80 chrX:13146143-13146223 6.80e-02 26_[+1(6.92e-05)]_46 chrIV:4784822-4784902 1.00e+00 80 chrI:8281157-8281237 2.75e-01 80 chrIII:1456318-1456398 3.97e-03 80 chrII:937465-937545 5.34e-03 24_[+4(1.51e-05)]_48 chrV:16094989-16095069 8.09e-03 22_[+4(3.12e-05)]_50 chrIV:12685957-12686037 1.93e-03 6_[+1(8.62e-05)]_13_[+2(3.67e-05)]_\ 45 chrIV:4756143-4756223 1.41e-03 12_[+3(3.91e-05)]_60 chrI:13501043-13501123 1.34e-02 47_[+1(6.92e-05)]_25 chrII:11890819-11890899 2.17e-01 80 chrIV:5970680-5970760 1.55e-01 80 chrX:4609800-4609880 2.26e-01 80 chrI:6080325-6080405 5.27e-03 47_[+3(3.91e-05)]_15_[+1(4.04e-05)]_\ 2 chrI:5820523-5820603 1.13e-02 6_[+1(8.62e-05)]_66 chrIV:13121455-13121535 2.48e-01 38_[+1(6.92e-05)]_34 chrX:2044964-2045044 3.87e-02 23_[+1(6.92e-05)]_49 chrII:1788147-1788227 4.38e-03 64_[+1(2.83e-05)]_8 chrX:14779297-14779377 2.73e-02 64_[+5(1.46e-05)]_8 chrII:2092140-2092220 4.71e-03 10_[+3(1.40e-05)]_62 chrIII:3086653-3086733 2.73e-03 16_[+3(5.16e-05)]_56 chrI:14067522-14067602 7.84e-04 3_[+3(3.91e-05)]_69 chrX:12689638-12689718 4.55e-04 32_[+1(8.62e-05)]_27_[+2(3.67e-05)]_\ 5 chrX:11675757-11675837 2.70e-03 80 chrIV:11867835-11867915 1.30e-03 22_[+3(1.40e-05)]_50 chrI:2966482-2966562 5.64e-02 80 chrX:9933565-9933645 1.36e-01 19_[+5(3.16e-05)]_53 chrI:7704047-7704127 9.35e-01 80 chrII:12991361-12991441 4.67e-02 80 chrII:2431955-2432035 5.75e-02 31_[+1(6.92e-05)]_41 chrV:1575832-1575912 1.70e-01 80 chrI:452732-452812 3.95e-04 21_[+2(1.92e-05)]_11_[+3(6.52e-05)]_\ 32 chrV:4525639-4525719 5.42e-01 80 chrII:9063549-9063629 3.86e-02 80 chrV:14793204-14793284 8.71e-02 1_[+3(2.67e-05)]_13_[+3(2.67e-05)]_\ 50 chrIII:3543315-3543395 5.67e-03 80 chrII:2093889-2093969 1.16e-03 9_[+3(3.91e-05)]_63 chrV:13018889-13018969 3.57e-02 80 chrI:7714894-7714974 6.61e-02 80 chrX:6224935-6225015 4.64e-03 14_[+1(6.92e-05)]_58 chrI:1839609-1839689 1.57e-01 80 chrV:3449904-3449984 3.76e-01 80 chrX:1222547-1222627 4.22e-02 15_[+3(3.91e-05)]_57 chrII:10784946-10785026 2.44e-01 80 chrV:3448045-3448125 1.76e-03 35_[+3(2.67e-05)]_37 chrII:2145696-2145776 7.51e-01 80 chrIV:13116787-13116867 7.83e-04 52_[+3(3.91e-05)]_20 chrX:591876-591956 1.62e-01 33_[+1(6.92e-05)]_39 chrX:10613756-10613836 1.74e-01 80 chrX:3467559-3467639 2.97e-01 80 chrV:1229046-1229126 1.73e-02 80 chrX:2375101-2375181 1.14e-02 37_[+1(6.92e-05)]_35 chrII:11543108-11543188 1.60e-01 80 chrIV:9770921-9771001 3.61e-02 80 chrX:2049045-2049125 3.33e-03 49_[+3(1.40e-05)]_23 chrX:467488-467568 3.24e-01 80 chrV:1572725-1572805 2.27e-01 80 chrII:1538747-1538827 8.64e-02 26_[+1(4.04e-05)]_46 chrX:14486602-14486682 6.06e-03 80 chrIV:5956823-5956903 3.64e-03 27_[+2(1.92e-05)]_45 chrIII:12901208-12901288 9.96e-01 80 chrII:4577563-4577643 2.53e-03 50_[+2(5.41e-05)]_22 chrIII:8962613-8962693 8.69e-01 80 chrX:13221515-13221595 6.97e-02 80 chrII:6411718-6411798 1.66e-04 26_[+1(8.62e-05)]_1_[+5(6.47e-05)]_\ 37 chrIII:2234363-2234443 2.22e-04 6_[+4(1.51e-05)]_49_[+4(1.51e-05)]_\ 9 chrV:1371276-1371356 1.00e+00 80 chrX:11210613-11210693 1.39e-02 13_[+1(2.83e-05)]_40_[+1(6.92e-05)]_\ 11 chrI:2749507-2749587 2.51e-01 80 chrX:5698419-5698499 3.59e-02 80 chrV:16742296-16742376 6.11e-03 61_[+4(3.12e-05)]_11 chrIII:4519560-4519640 3.22e-01 80 chrV:13024591-13024671 7.60e-03 80 chrX:10845143-10845223 1.21e-03 1_[+3(7.73e-05)]_71 chrI:8512954-8513034 2.88e-01 80 chrX:17150261-17150341 2.47e-01 24_[+1(8.62e-05)]_48 chrV:19964777-19964857 1.69e-02 51_[+2(3.67e-05)]_21 chrII:4827861-4827941 1.91e-02 49_[+1(6.92e-05)]_23 chrIII:1567600-1567680 1.77e-01 80 chrX:14447668-14447748 2.49e-02 80 chrX:9989158-9989238 4.91e-01 80 chrIII:5940075-5940155 4.01e-01 80 chrI:3993728-3993808 2.70e-01 80 chrX:15597570-15597650 1.86e-03 25_[+3(1.40e-05)]_47 chrV:14650755-14650835 2.10e-02 80 chrIV:130354-130434 2.56e-01 80 chrII:5418560-5418640 2.17e-03 80 chrX:10591510-10591590 4.70e-02 80 chrIV:6984643-6984723 2.84e-02 44_[+1(6.92e-05)]_28 chrI:3603294-3603374 1.36e-01 80 chrX:6258528-6258608 4.78e-01 80 chrX:10502358-10502438 1.69e-01 80 chrIII:870727-870807 5.15e-02 80 chrI:6280434-6280514 2.03e-02 43_[+1(6.92e-05)]_29 chrIV:5079013-5079093 3.23e-01 80 chrII:3957499-3957579 9.25e-03 80 chrV:6684652-6684732 2.26e-03 15_[+1(8.62e-05)]_57 chrI:11124811-11124891 7.89e-02 80 chrII:11688134-11688214 7.58e-04 35_[+3(1.40e-05)]_37 chrX:4125345-4125425 9.03e-02 80 chrV:1555717-1555797 1.01e-02 [+3(3.91e-05)]_72 chrII:10065598-10065678 1.67e-01 80 chrIV:178731-178811 3.80e-02 60_[+5(4.69e-05)]_12 chrII:11794580-11794660 9.96e-04 2_[+3(1.40e-05)]_70 chrX:8273682-8273762 2.85e-02 67_[+2(3.67e-05)]_5 chrIV:12549193-12549273 5.56e-03 71_[+5(1.46e-05)]_1 chrI:3338402-3338482 3.71e-02 50_[+1(4.04e-05)]_22 chrX:7713087-7713167 4.78e-03 68_[+1(6.92e-05)]_4 chrIII:1458328-1458408 4.41e-03 80 chrII:5933225-5933305 1.41e-01 59_[+1(6.92e-05)]_13 chrX:11948422-11948502 3.79e-02 69_[+1(6.92e-05)]_3 chrI:12593041-12593121 7.28e-02 80 chrI:4703332-4703412 2.69e-04 21_[+3(3.91e-05)]_17_[+2(1.92e-05)]_\ 26 chrIV:175848-175928 2.17e-01 80 chrIII:4502607-4502687 1.72e-01 80 chrII:12984855-12984935 9.81e-02 80 chrX:10508139-10508219 3.20e-01 80 chrIV:3665266-3665346 2.86e-02 80 chrX:4972159-4972239 1.41e-02 80 chrX:8662551-8662631 7.62e-01 80 chrI:8507746-8507826 3.65e-01 80 chrIII:2159347-2159427 1.12e-03 48_[+4(1.51e-05)]_24 chrIII:13525579-13525659 6.76e-01 80 chrI:2312378-2312458 4.21e-01 80 chrIV:9264000-9264080 9.78e-02 80 chrI:2844302-2844382 4.20e-03 80 chrV:16042493-16042573 2.22e-02 60_[+5(1.46e-05)]_12 chrX:10851930-10852010 3.40e-02 36_[+1(2.83e-05)]_36 chrIII:6929193-6929273 8.26e-03 58_[+3(3.91e-05)]_14 chrX:5995846-5995926 6.86e-04 80 chrX:13143339-13143419 5.22e-03 55_[+1(6.92e-05)]_17 chrIV:8399980-8400060 8.17e-01 80 chrX:3870692-3870772 3.69e-02 80 chrII:13739623-13739703 2.81e-02 80 chrX:10991964-10992044 2.25e-02 80 chrI:5821210-5821290 3.78e-02 47_[+1(6.92e-05)]_25 chrII:7815592-7815672 4.26e-02 80 chrIII:179307-179387 7.63e-03 56_[+4(1.51e-05)]_16 chrI:14141911-14141991 5.85e-01 80 chrIV:12158084-12158164 1.48e-02 34_[+2(3.67e-05)]_38 chrX:15273456-15273536 5.48e-02 49_[+3(7.73e-05)]_23 chrX:14487528-14487608 1.16e-01 80 chrI:11208264-11208344 5.47e-01 80 chrIV:9772283-9772363 5.04e-01 80 chrX:3471184-3471264 7.94e-03 54_[+3(3.91e-05)]_18 chrIII:8901254-8901334 2.21e-01 80 chrIV:1895156-1895236 4.55e-03 8_[+1(6.92e-05)]_10_[+2(3.67e-05)]_\ 46 chrIV:12582191-12582271 8.21e-04 12_[+2(3.67e-05)]_2_[+2(1.92e-05)]_\ 50 chrII:11889509-11889589 3.88e-02 80 chrX:16988513-16988593 4.62e-03 80 chrX:1996181-1996261 2.26e-01 80 chrX:13881947-13882027 2.00e-01 80 chrI:381578-381658 3.27e-01 80 chrIV:12546011-12546091 1.01e-02 80 chrIV:8182599-8182679 5.03e-01 80 chrIII:5983939-5984019 1.50e-03 25_[+3(1.40e-05)]_47 chrX:7502689-7502769 5.13e-03 80 chrI:4745426-4745506 9.34e-01 80 chrX:7236952-7237032 9.31e-02 80 chrI:9940912-9940992 1.57e-02 80 chrIV:11584182-11584262 8.96e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************