******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/chd-7.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:8963196-8963276 1.0000 80 chrIII:8519188-8519268 1.0000 80 chrII:11774380-11774460 1.0000 80 chrI:4696881-4696961 1.0000 80 chrI:10776568-10776648 1.0000 80 chrI:2867487-2867567 1.0000 80 chrI:6836584-6836664 1.0000 80 chrIII:12017450-12017530 1.0000 80 chrIII:4341262-4341342 1.0000 80 chrV:14422408-14422488 1.0000 80 chrIV:3032142-3032222 1.0000 80 chrIII:5557423-5557503 1.0000 80 chrII:7100943-7101023 1.0000 80 chrV:4958443-4958523 1.0000 80 chrIV:7051050-7051130 1.0000 80 chrX:3403551-3403631 1.0000 80 chrI:7859766-7859846 1.0000 80 chrIV:4710567-4710647 1.0000 80 chrIV:9731491-9731571 1.0000 80 chrII:12520542-12520622 1.0000 80 chrIV:2602902-2602982 1.0000 80 chrV:6222444-6222524 1.0000 80 chrII:5378912-5378992 1.0000 80 chrIII:11389508-11389588 1.0000 80 chrV:9628720-9628800 1.0000 80 chrII:12736740-12736820 1.0000 80 chrII:13279630-13279710 1.0000 80 chrIII:11251869-11251949 1.0000 80 chrIV:1123306-1123386 1.0000 80 chrX:1488932-1489012 1.0000 80 chrIV:5937083-5937163 1.0000 80 chrIII:3957215-3957295 1.0000 80 chrIII:5683454-5683534 1.0000 80 chrII:9934767-9934847 1.0000 80 chrV:14197776-14197856 1.0000 80 chrII:5575056-5575136 1.0000 80 chrX:12913521-12913601 1.0000 80 chrV:20234602-20234682 1.0000 80 chrI:11745730-11745810 1.0000 80 chrI:134222-134302 1.0000 80 chrV:19520273-19520353 1.0000 80 chrX:14164396-14164476 1.0000 80 chrI:13359855-13359935 1.0000 80 chrII:13198321-13198401 1.0000 80 chrIV:4652601-4652681 1.0000 80 chrX:8801218-8801298 1.0000 80 chrIV:4471543-4471623 1.0000 80 chrIII:12607358-12607438 1.0000 80 chrV:6758353-6758433 1.0000 80 chrX:13764894-13764974 1.0000 80 chrII:11651081-11651161 1.0000 80 chrI:9106662-9106742 1.0000 80 chrV:2872161-2872241 1.0000 80 chrIV:13083069-13083149 1.0000 80 chrII:7319675-7319755 1.0000 80 chrV:20498446-20498526 1.0000 80 chrX:6536861-6536941 1.0000 80 chrIV:4413074-4413154 1.0000 80 chrV:9618522-9618602 1.0000 80 chrII:11977505-11977585 1.0000 80 chrI:14104031-14104111 1.0000 80 chrX:10396816-10396896 1.0000 80 chrV:7858013-7858093 1.0000 80 chrI:8866921-8867001 1.0000 80 chrV:6344857-6344937 1.0000 80 chrIV:2765185-2765265 1.0000 80 chrII:2987323-2987403 1.0000 80 chrI:4646610-4646690 1.0000 80 chrI:9624517-9624597 1.0000 80 chrII:6252898-6252978 1.0000 80 chrIV:7962177-7962257 1.0000 80 chrX:13108800-13108880 1.0000 80 chrIII:11692503-11692583 1.0000 80 chrII:9132445-9132525 1.0000 80 chrII:10448499-10448579 1.0000 80 chrIII:8806612-8806692 1.0000 80 chrIV:15049624-15049704 1.0000 80 chrX:6522876-6522956 1.0000 80 chrI:7602341-7602421 1.0000 80 chrIII:10245365-10245445 1.0000 80 chrII:10391239-10391319 1.0000 80 chrII:8133965-8134045 1.0000 80 chrI:2686288-2686368 1.0000 80 chrIV:13348756-13348836 1.0000 80 chrI:9970275-9970355 1.0000 80 chrIV:13398717-13398797 1.0000 80 chrV:15056540-15056620 1.0000 80 chrI:7869004-7869084 1.0000 80 chrIV:16168111-16168191 1.0000 80 chrV:10967002-10967082 1.0000 80 chrIII:12428959-12429039 1.0000 80 chrI:2622977-2623057 1.0000 80 chrX:10667003-10667083 1.0000 80 chrII:12054732-12054812 1.0000 80 chrII:12058450-12058530 1.0000 80 chrIV:11149060-11149140 1.0000 80 chrX:4218304-4218384 1.0000 80 chrII:290895-290975 1.0000 80 chrV:7744239-7744319 1.0000 80 chrI:8765756-8765836 1.0000 80 chrX:17058430-17058510 1.0000 80 chrIII:1625837-1625917 1.0000 80 chrI:13340341-13340421 1.0000 80 chrV:20267151-20267231 1.0000 80 chrI:4697747-4697827 1.0000 80 chrIII:7977319-7977399 1.0000 80 chrIII:10464689-10464769 1.0000 80 chrIII:10209822-10209902 1.0000 80 chrII:12994199-12994279 1.0000 80 chrV:10238039-10238119 1.0000 80 chrII:12212061-12212141 1.0000 80 chrIII:5762013-5762093 1.0000 80 chrX:12169562-12169642 1.0000 80 chrIV:1232545-1232625 1.0000 80 chrV:10343046-10343126 1.0000 80 chrV:13783301-13783381 1.0000 80 chrIV:15042405-15042485 1.0000 80 chrIV:5544876-5544956 1.0000 80 chrIV:13026945-13027025 1.0000 80 chrX:13351518-13351598 1.0000 80 chrIII:2811537-2811617 1.0000 80 chrIII:9824620-9824700 1.0000 80 chrX:14500854-14500934 1.0000 80 chrX:8017428-8017508 1.0000 80 chrI:13942466-13942546 1.0000 80 chrX:3118912-3118992 1.0000 80 chrIV:13367841-13367921 1.0000 80 chrIV:3382663-3382743 1.0000 80 chrII:10016248-10016328 1.0000 80 chrII:8037938-8038018 1.0000 80 chrIV:12197825-12197905 1.0000 80 chrI:9969491-9969571 1.0000 80 chrIII:4015773-4015853 1.0000 80 chrIII:8979088-8979168 1.0000 80 chrV:5582528-5582608 1.0000 80 chrX:8023858-8023938 1.0000 80 chrII:8878764-8878844 1.0000 80 chrX:15036473-15036553 1.0000 80 chrV:13908522-13908602 1.0000 80 chrIII:10817146-10817226 1.0000 80 chrI:14760917-14760997 1.0000 80 chrV:9786771-9786851 1.0000 80 chrIII:12686520-12686600 1.0000 80 chrII:9886320-9886400 1.0000 80 chrII:7324079-7324159 1.0000 80 chrIII:7738092-7738172 1.0000 80 chrV:3714115-3714195 1.0000 80 chrV:10968053-10968133 1.0000 80 chrII:9739016-9739096 1.0000 80 chrI:5412568-5412648 1.0000 80 chrII:14494146-14494226 1.0000 80 chrV:2601907-2601987 1.0000 80 chrIV:12689782-12689862 1.0000 80 chrIV:7043644-7043724 1.0000 80 chrI:6788758-6788838 1.0000 80 chrI:14952650-14952730 1.0000 80 chrIV:2307587-2307667 1.0000 80 chrI:2065548-2065628 1.0000 80 chrV:20164664-20164744 1.0000 80 chrII:9944186-9944266 1.0000 80 chrX:5101144-5101224 1.0000 80 chrII:14012429-14012509 1.0000 80 chrX:1337197-1337277 1.0000 80 chrIII:5321869-5321949 1.0000 80 chrI:5079666-5079746 1.0000 80 chrV:6019110-6019190 1.0000 80 chrII:8020726-8020806 1.0000 80 chrX:1142132-1142212 1.0000 80 chrV:15000421-15000501 1.0000 80 chrIII:2666451-2666531 1.0000 80 chrIII:10405188-10405268 1.0000 80 chrII:6788246-6788326 1.0000 80 chrII:4421962-4422042 1.0000 80 chrIV:6792467-6792547 1.0000 80 chrII:14155808-14155888 1.0000 80 chrV:3634905-3634985 1.0000 80 chrIII:9626730-9626810 1.0000 80 chrIII:7329467-7329547 1.0000 80 chrIV:358895-358975 1.0000 80 chrIV:761909-761989 1.0000 80 chrIV:15038959-15039039 1.0000 80 chrII:12518983-12519063 1.0000 80 chrI:3986743-3986823 1.0000 80 chrII:4094451-4094531 1.0000 80 chrIII:13527913-13527993 1.0000 80 chrIV:3506088-3506168 1.0000 80 chrV:5579178-5579258 1.0000 80 chrIV:13882772-13882852 1.0000 80 chrV:11174809-11174889 1.0000 80 chrIV:4018833-4018913 1.0000 80 chrV:6221641-6221721 1.0000 80 chrIII:13627960-13628040 1.0000 80 chrIV:1459663-1459743 1.0000 80 chrV:20412315-20412395 1.0000 80 chrV:3163282-3163362 1.0000 80 chrIV:6326105-6326185 1.0000 80 chrIII:7495026-7495106 1.0000 80 chrV:10468326-10468406 1.0000 80 chrV:19430686-19430766 1.0000 80 chrI:2586284-2586364 1.0000 80 chrX:12934877-12934957 1.0000 80 chrV:8939720-8939800 1.0000 80 chrII:10551239-10551319 1.0000 80 chrIII:10536212-10536292 1.0000 80 chrV:117564-117644 1.0000 80 chrIV:7558907-7558987 1.0000 80 chrII:13598361-13598441 1.0000 80 chrX:3408979-3409059 1.0000 80 chrV:13796528-13796608 1.0000 80 chrIII:1744645-1744725 1.0000 80 chrI:10762032-10762112 1.0000 80 chrX:9561086-9561166 1.0000 80 chrIII:909803-909883 1.0000 80 chrV:20497656-20497736 1.0000 80 chrV:1158319-1158399 1.0000 80 chrII:14350929-14351009 1.0000 80 chrV:10855446-10855526 1.0000 80 chrV:11541532-11541612 1.0000 80 chrIV:2817263-2817343 1.0000 80 chrIV:4511737-4511817 1.0000 80 chrIII:11830659-11830739 1.0000 80 chrV:9517904-9517984 1.0000 80 chrV:18575289-18575369 1.0000 80 chrII:1152818-1152898 1.0000 80 chrIII:4096718-4096798 1.0000 80 chrV:13043307-13043387 1.0000 80 chrII:10531764-10531844 1.0000 80 chrII:4042920-4043000 1.0000 80 chrV:9625900-9625980 1.0000 80 chrIII:10534286-10534366 1.0000 80 chrIII:8685976-8686056 1.0000 80 chrV:12302517-12302597 1.0000 80 chrV:6427006-6427086 1.0000 80 chrI:10187363-10187443 1.0000 80 chrIII:5832651-5832731 1.0000 80 chrIII:3426937-3427017 1.0000 80 chrX:1487238-1487318 1.0000 80 chrII:6587460-6587540 1.0000 80 chrIV:7730944-7731024 1.0000 80 chrIII:10819887-10819967 1.0000 80 chrII:5341197-5341277 1.0000 80 chrI:14936607-14936687 1.0000 80 chrV:13567004-13567084 1.0000 80 chrIII:3790027-3790107 1.0000 80 chrIII:11694433-11694513 1.0000 80 chrIV:13701634-13701714 1.0000 80 chrIII:11091120-11091200 1.0000 80 chrI:3161362-3161442 1.0000 80 chrV:20848004-20848084 1.0000 80 chrII:5202081-5202161 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_chd-7/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/chd-7.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.267 C 0.234 G 0.238 T 0.26 Background letter frequencies (from file dataset with add-one prior applied): A 0.267 C 0.234 G 0.238 T 0.26 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTTTSAAA MEME-1 width = 8 sites = 24 llr = 212 E-value = 1.4e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTSAAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::8a6 pos.-specific C ::::62:3 probability G ::::4::1 matrix T aaaa:::: bits 2.1 1.9 **** * 1.7 **** * 1.5 **** * Relative 1.3 **** ** Entropy 1.0 ******* (12.7 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTCAAA consensus GC C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTSAAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:4511737-4511817 40 2.04e-05 AACAATTTTC TTTTCAAA TTCCAAGTTT chrIII:9626730-9626810 59 2.04e-05 ATTGTCAATC TTTTCAAA CTTGTCGATG chrI:2686288-2686368 65 2.04e-05 GCCGTTTTTT TTTTCAAA TTTCCGAG chrV:7858013-7858093 43 2.04e-05 AGTTAGCCCA TTTTCAAA TCATCACCCA chrV:20234602-20234682 55 2.04e-05 CTTGACCAAG TTTTCAAA CTGCTCCAAA chrV:4958443-4958523 68 2.04e-05 TTCACTACAA TTTTCAAA AAGTC chrIII:8519188-8519268 23 2.04e-05 TAAATCCTTG TTTTCAAA TAGTTCAGCT chrIV:358895-358975 71 4.11e-05 GCACGTTGAT TTTTGAAA TA chrV:2872161-2872241 16 4.11e-05 TGATTATCCC TTTTGAAA TTTTCatttt chrII:12520542-12520622 32 4.11e-05 AACTTCTGAT TTTTGAAA TTTTTTAAAG chrIII:5557423-5557503 45 4.11e-05 GTTCCCGCGT TTTTGAAA GTTCGAGGAC chrIII:4096718-4096798 2 5.89e-05 T TTTTCAAC AATCTATTTC chrIII:2666451-2666531 58 5.89e-05 ACTTCTCATA TTTTCAAC TCGGCACCGA chrI:5412568-5412648 2 5.89e-05 C TTTTCAAC GATTTCTAAT chrI:14760917-14760997 43 5.89e-05 TGATACAAAT TTTTCAAC TTGTACATGC chrV:117564-117644 38 9.49e-05 TTGATGCACT TTTTGAAC TCGATCAATG chrIII:5762013-5762093 30 9.49e-05 GATTGCAAAG TTTTCCAA AAACATtgca chrV:14422408-14422488 1 9.49e-05 . TTTTGAAC GGCAATGACA chrIV:13701634-13701714 65 1.13e-04 CTAGTTTCAT TTTTGCAA ACTCAAGT chrV:20164664-20164744 5 1.13e-04 TGAA TTTTGCAA ACTGATATTT chrIV:11149060-11149140 61 1.13e-04 GGTTGCCACG TTTTGCAA AACGAGGGAA chrIV:16168111-16168191 56 1.29e-04 GCTCGTTGTC TTTTCCAC CGTGTGGATC chrII:7324079-7324159 47 1.47e-04 ACTCGTGTTC TTTTCAAG AAATTGATGA chrV:20498446-20498526 61 1.47e-04 TGTGCTGTAC TTTTCAAG TTGGTTGTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTSAAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:4511737-4511817 2e-05 39_[+1]_33 chrIII:9626730-9626810 2e-05 58_[+1]_14 chrI:2686288-2686368 2e-05 64_[+1]_8 chrV:7858013-7858093 2e-05 42_[+1]_30 chrV:20234602-20234682 2e-05 54_[+1]_18 chrV:4958443-4958523 2e-05 67_[+1]_5 chrIII:8519188-8519268 2e-05 22_[+1]_50 chrIV:358895-358975 4.1e-05 70_[+1]_2 chrV:2872161-2872241 4.1e-05 15_[+1]_57 chrII:12520542-12520622 4.1e-05 31_[+1]_41 chrIII:5557423-5557503 4.1e-05 44_[+1]_28 chrIII:4096718-4096798 5.9e-05 1_[+1]_71 chrIII:2666451-2666531 5.9e-05 57_[+1]_15 chrI:5412568-5412648 5.9e-05 1_[+1]_71 chrI:14760917-14760997 5.9e-05 42_[+1]_30 chrV:117564-117644 9.5e-05 37_[+1]_35 chrIII:5762013-5762093 9.5e-05 29_[+1]_43 chrV:14422408-14422488 9.5e-05 [+1]_72 chrIV:13701634-13701714 0.00011 64_[+1]_8 chrV:20164664-20164744 0.00011 4_[+1]_68 chrIV:11149060-11149140 0.00011 60_[+1]_12 chrIV:16168111-16168191 0.00013 55_[+1]_17 chrII:7324079-7324159 0.00015 46_[+1]_26 chrV:20498446-20498526 0.00015 60_[+1]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTSAAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTSAAA width=8 seqs=24 chrIV:4511737-4511817 ( 40) TTTTCAAA 1 chrIII:9626730-9626810 ( 59) TTTTCAAA 1 chrI:2686288-2686368 ( 65) TTTTCAAA 1 chrV:7858013-7858093 ( 43) TTTTCAAA 1 chrV:20234602-20234682 ( 55) TTTTCAAA 1 chrV:4958443-4958523 ( 68) TTTTCAAA 1 chrIII:8519188-8519268 ( 23) TTTTCAAA 1 chrIV:358895-358975 ( 71) TTTTGAAA 1 chrV:2872161-2872241 ( 16) TTTTGAAA 1 chrII:12520542-12520622 ( 32) TTTTGAAA 1 chrIII:5557423-5557503 ( 45) TTTTGAAA 1 chrIII:4096718-4096798 ( 2) TTTTCAAC 1 chrIII:2666451-2666531 ( 58) TTTTCAAC 1 chrI:5412568-5412648 ( 2) TTTTCAAC 1 chrI:14760917-14760997 ( 43) TTTTCAAC 1 chrV:117564-117644 ( 38) TTTTGAAC 1 chrIII:5762013-5762093 ( 30) TTTTCCAA 1 chrV:14422408-14422488 ( 1) TTTTGAAC 1 chrIV:13701634-13701714 ( 65) TTTTGCAA 1 chrV:20164664-20164744 ( 5) TTTTGCAA 1 chrIV:11149060-11149140 ( 61) TTTTGCAA 1 chrIV:16168111-16168191 ( 56) TTTTCCAC 1 chrII:7324079-7324159 ( 47) TTTTCAAG 1 chrV:20498446-20498526 ( 61) TTTTCAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTSAAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.2272 E= 1.4e+001 -1123 -1123 -1123 194 -1123 -1123 -1123 194 -1123 -1123 -1123 194 -1123 -1123 -1123 194 -1123 141 66 -1123 157 -17 -1123 -1123 190 -1123 -1123 -1123 122 32 -151 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTSAAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 1.4e+001 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.625000 0.375000 0.000000 0.791667 0.208333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.625000 0.291667 0.083333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTSAAA MEME-1 regular expression -------------------------------------------------------------------------------- TTTT[CG][AC]A[AC] -------------------------------------------------------------------------------- Time 9.13 secs. ******************************************************************************** ******************************************************************************** MOTIF CATTTTTY MEME-2 width = 8 sites = 19 llr = 176 E-value = 2.5e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CATTTTTY MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a:::::: pos.-specific C a:::::25 probability G ::::::2: matrix T ::aaaa65 bits 2.1 * 1.9 ****** 1.7 ****** 1.5 ****** Relative 1.3 ****** Entropy 1.0 ****** * (13.4 bits) 0.8 ****** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CATTTTTC consensus CT sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATTTTTY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:11541532-11541612 30 1.74e-05 ACGAACATCA CATTTTTC TAGAGTTTCA chrII:6788246-6788326 59 1.74e-05 AACCCGAGCG CATTTTTC TTCATAGCAC chrIII:4015773-4015853 51 1.74e-05 TGAGCGCTCG CATTTTTC TCAACCTTTC chrIII:2811537-2811617 40 1.74e-05 TATTTTTATT CATTTTTC CTCCAATTGC chrV:2872161-2872241 28 1.74e-05 TTGAAATTTT Catttttc gcactccatc chrV:1158319-1158399 21 3.67e-05 GAAAGGTTCA CATTTTTT TGCCGGAAAA chrV:20497656-20497736 68 3.67e-05 aaaaatcccg catttttt gtaga chrV:10468326-10468406 2 3.67e-05 A CATTTTTT TTAATGATAA chrIII:8979088-8979168 56 3.67e-05 ATCTTTCTCT CATTTTTT CATTGATTAT chrII:8133965-8134045 32 3.67e-05 GCAATCTGTA CATTTTTT GTTGGGTATC chrV:20498446-20498526 5 3.67e-05 cccg catttttt gtagatcaaa chrIV:2817263-2817343 48 6.82e-05 cacacgcccg cattttgc gcctcactca chrX:14500854-14500934 56 6.82e-05 GAGTAAATTG CATTTTGC AGCGCCGATA chrII:290895-290975 29 6.82e-05 TAAATATTCA CATTTTCC AGGTAAAATG chrI:8866921-8867001 8 6.82e-05 TTTTGGT CATTTTCC ATGTCTCCGG chrX:10396816-10396896 25 6.82e-05 TTTTGTTCTC CATTTTCC TCTGTATTCT chrII:9944186-9944266 56 1.03e-04 TACAAATTCC CATTTTCT ATGCAAAAGA chrI:9624517-9624597 14 1.03e-04 ATAAGAAGAA CATTTTGT TCACGGCAAT chrIV:3032142-3032222 20 1.03e-04 CGCCCGAGAG CATTTTGT GTTGTCATCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATTTTTY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:11541532-11541612 1.7e-05 29_[+2]_43 chrII:6788246-6788326 1.7e-05 58_[+2]_14 chrIII:4015773-4015853 1.7e-05 50_[+2]_22 chrIII:2811537-2811617 1.7e-05 39_[+2]_33 chrV:2872161-2872241 1.7e-05 27_[+2]_45 chrV:1158319-1158399 3.7e-05 20_[+2]_52 chrV:20497656-20497736 3.7e-05 67_[+2]_5 chrV:10468326-10468406 3.7e-05 1_[+2]_71 chrIII:8979088-8979168 3.7e-05 55_[+2]_17 chrII:8133965-8134045 3.7e-05 31_[+2]_41 chrV:20498446-20498526 3.7e-05 4_[+2]_68 chrIV:2817263-2817343 6.8e-05 47_[+2]_25 chrX:14500854-14500934 6.8e-05 55_[+2]_17 chrII:290895-290975 6.8e-05 28_[+2]_44 chrI:8866921-8867001 6.8e-05 7_[+2]_65 chrX:10396816-10396896 6.8e-05 24_[+2]_48 chrII:9944186-9944266 0.0001 55_[+2]_17 chrI:9624517-9624597 0.0001 13_[+2]_59 chrIV:3032142-3032222 0.0001 19_[+2]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATTTTTY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CATTTTTY width=8 seqs=19 chrV:11541532-11541612 ( 30) CATTTTTC 1 chrII:6788246-6788326 ( 59) CATTTTTC 1 chrIII:4015773-4015853 ( 51) CATTTTTC 1 chrIII:2811537-2811617 ( 40) CATTTTTC 1 chrV:2872161-2872241 ( 28) CATTTTTC 1 chrV:1158319-1158399 ( 21) CATTTTTT 1 chrV:20497656-20497736 ( 68) CATTTTTT 1 chrV:10468326-10468406 ( 2) CATTTTTT 1 chrIII:8979088-8979168 ( 56) CATTTTTT 1 chrII:8133965-8134045 ( 32) CATTTTTT 1 chrV:20498446-20498526 ( 5) CATTTTTT 1 chrIV:2817263-2817343 ( 48) CATTTTGC 1 chrX:14500854-14500934 ( 56) CATTTTGC 1 chrII:290895-290975 ( 29) CATTTTCC 1 chrI:8866921-8867001 ( 8) CATTTTCC 1 chrX:10396816-10396896 ( 25) CATTTTCC 1 chrII:9944186-9944266 ( 56) CATTTTCT 1 chrI:9624517-9624597 ( 14) CATTTTGT 1 chrIV:3032142-3032222 ( 20) CATTTTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATTTTTY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1012 E= 2.5e+001 -1089 209 -1089 -1089 190 -1089 -1089 -1089 -1089 -1089 -1089 194 -1089 -1089 -1089 194 -1089 -1089 -1089 194 -1089 -1089 -1089 194 -1089 -15 -18 115 -1089 117 -1089 86 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATTTTTY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 2.5e+001 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.210526 0.210526 0.578947 0.000000 0.526316 0.000000 0.473684 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CATTTTTY MEME-2 regular expression -------------------------------------------------------------------------------- CATTTT[TCG][CT] -------------------------------------------------------------------------------- Time 14.51 secs. ******************************************************************************** ******************************************************************************** MOTIF GGYKGCTC MEME-3 width = 8 sites = 14 llr = 132 E-value = 5.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGYKGCTC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::6::a:a probability G a7:6a::: matrix T :344::a: bits 2.1 * ** * 1.9 * **** 1.7 * **** 1.5 * **** Relative 1.3 ** **** Entropy 1.0 ******** (13.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGCGGCTC consensus TTT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYKGCTC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:9739016-9739096 21 1.07e-05 GACGAACGTC GGCGGCTC GCGACGCGAA chrV:3714115-3714195 59 1.07e-05 CACCCGAACG GGCGGCTC GTTGGGAGAA chrIII:1625837-1625917 38 1.07e-05 GGTTACAGGT GGCGGCTC TCTGCAGCAG chrIII:11692503-11692583 52 1.07e-05 AACAATGACG GGCGGCTC AATGCGAATG chrIV:4018833-4018913 50 3.42e-05 GTCTGGATGG GGTGGCTC GAATCCGATT chrII:2987323-2987403 60 3.42e-05 GTGATATGTC GGCTGCTC GCCAGTGTGC chrII:11977505-11977585 32 3.42e-05 aggTTGGTGA GGTGGCTC CAGAGGTTCT chrIV:4413074-4413154 31 3.42e-05 CGTGAATGGA GGTGGCTC CACTGCGTCG chrI:7859766-7859846 57 3.42e-05 GGGGTGCTCC GGCTGCTC CGGCCGCCGT chrII:12736740-12736820 26 4.59e-05 CACCTCGCCA GTCGGCTC CTCTCTGCCA chrII:12054732-12054812 8 5.89e-05 AACCGTC GGTTGCTC CGAGAATCGC chrII:14494146-14494226 50 8.46e-05 GTTTCCACTG GTTGGCTC AATGAGCACA chrV:10967002-10967082 24 8.46e-05 AAGTCGCCAA GTCTGCTC CAAAGGCCGA chrIII:5683454-5683534 56 8.46e-05 CATATCTTTA GTCTGCTC CCATCCGACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYKGCTC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:9739016-9739096 1.1e-05 20_[+3]_52 chrV:3714115-3714195 1.1e-05 58_[+3]_14 chrIII:1625837-1625917 1.1e-05 37_[+3]_35 chrIII:11692503-11692583 1.1e-05 51_[+3]_21 chrIV:4018833-4018913 3.4e-05 49_[+3]_23 chrII:2987323-2987403 3.4e-05 59_[+3]_13 chrII:11977505-11977585 3.4e-05 31_[+3]_41 chrIV:4413074-4413154 3.4e-05 30_[+3]_42 chrI:7859766-7859846 3.4e-05 56_[+3]_16 chrII:12736740-12736820 4.6e-05 25_[+3]_47 chrII:12054732-12054812 5.9e-05 7_[+3]_65 chrII:14494146-14494226 8.5e-05 49_[+3]_23 chrV:10967002-10967082 8.5e-05 23_[+3]_49 chrIII:5683454-5683534 8.5e-05 55_[+3]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYKGCTC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGYKGCTC width=8 seqs=14 chrII:9739016-9739096 ( 21) GGCGGCTC 1 chrV:3714115-3714195 ( 59) GGCGGCTC 1 chrIII:1625837-1625917 ( 38) GGCGGCTC 1 chrIII:11692503-11692583 ( 52) GGCGGCTC 1 chrIV:4018833-4018913 ( 50) GGTGGCTC 1 chrII:2987323-2987403 ( 60) GGCTGCTC 1 chrII:11977505-11977585 ( 32) GGTGGCTC 1 chrIV:4413074-4413154 ( 31) GGTGGCTC 1 chrI:7859766-7859846 ( 57) GGCTGCTC 1 chrII:12736740-12736820 ( 26) GTCGGCTC 1 chrII:12054732-12054812 ( 8) GGTTGCTC 1 chrII:14494146-14494226 ( 50) GTTGGCTC 1 chrV:10967002-10967082 ( 24) GTCTGCTC 1 chrIII:5683454-5683534 ( 56) GTCTGCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYKGCTC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.5702 E= 5.0e+004 -1045 -1045 207 -1045 -1045 -1045 159 13 -1045 145 -1045 46 -1045 -1045 143 46 -1045 -1045 207 -1045 -1045 209 -1045 -1045 -1045 -1045 -1045 194 -1045 209 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYKGCTC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 5.0e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.714286 0.285714 0.000000 0.642857 0.000000 0.357143 0.000000 0.000000 0.642857 0.357143 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGYKGCTC MEME-3 regular expression -------------------------------------------------------------------------------- G[GT][CT][GT]GCTC -------------------------------------------------------------------------------- Time 18.23 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGGGCGG MEME-4 width = 8 sites = 2 llr = 23 E-value = 9.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGGGCGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aa:::a:: probability G ::aaa:aa matrix T :::::::: bits 2.1 ******** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.0 ******** (16.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCGGGCGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGGCGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:3426937-3427017 43 9.78e-06 ACTGAGCTAA CCGGGCGG CGATGTAGAC chrV:6344857-6344937 42 9.78e-06 TACATGGTTC CCGGGCGG AAGAAAAAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGGCGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:3426937-3427017 9.8e-06 42_[+4]_30 chrV:6344857-6344937 9.8e-06 41_[+4]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGGCGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGGGCGG width=8 seqs=2 chrIII:3426937-3427017 ( 43) CCGGGCGG 1 chrV:6344857-6344937 ( 42) CCGGGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGGCGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.3073 E= 9.1e+004 -765 209 -765 -765 -765 209 -765 -765 -765 -765 207 -765 -765 -765 207 -765 -765 -765 207 -765 -765 209 -765 -765 -765 -765 207 -765 -765 -765 207 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGGCGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 9.1e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGGCGG MEME-4 regular expression -------------------------------------------------------------------------------- CCGGGCGG -------------------------------------------------------------------------------- Time 21.88 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCGCCGC MEME-5 width = 8 sites = 2 llr = 23 E-value = 4.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCGCCGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :aa:aa:a probability G a::a::a: matrix T :::::::: bits 2.1 ******** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.0 ******** (16.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCCGCCGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCCGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:2065548-2065628 12 9.46e-06 GTCTTCTTCG GCCGCCGC CTCACCTCAT chrIII:5762013-5762093 69 9.46e-06 tcgaacccgg gccgccgc gtgg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCCGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:2065548-2065628 9.5e-06 11_[+5]_61 chrIII:5762013-5762093 9.5e-06 68_[+5]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCCGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCGCCGC width=8 seqs=2 chrI:2065548-2065628 ( 12) GCCGCCGC 1 chrIII:5762013-5762093 ( 69) GCCGCCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCCGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.3073 E= 4.3e+004 -765 -765 207 -765 -765 209 -765 -765 -765 209 -765 -765 -765 -765 207 -765 -765 209 -765 -765 -765 209 -765 -765 -765 -765 207 -765 -765 209 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCCGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 4.3e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCCGC MEME-5 regular expression -------------------------------------------------------------------------------- GCCGCCGC -------------------------------------------------------------------------------- Time 25.38 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:8963196-8963276 9.33e-01 80 chrIII:8519188-8519268 9.99e-02 22_[+1(2.04e-05)]_50 chrII:11774380-11774460 7.34e-01 80 chrI:4696881-4696961 9.89e-01 80 chrI:10776568-10776648 1.18e-01 80 chrI:2867487-2867567 7.50e-01 80 chrI:6836584-6836664 9.62e-01 80 chrIII:12017450-12017530 4.66e-01 80 chrIII:4341262-4341342 9.35e-02 80 chrV:14422408-14422488 2.72e-01 [+1(9.49e-05)]_72 chrIV:3032142-3032222 1.26e-01 80 chrIII:5557423-5557503 2.08e-02 44_[+1(4.11e-05)]_28 chrII:7100943-7101023 5.74e-01 80 chrV:4958443-4958523 2.90e-02 67_[+1(2.04e-05)]_5 chrIV:7051050-7051130 5.50e-01 80 chrX:3403551-3403631 6.47e-01 80 chrI:7859766-7859846 8.45e-04 56_[+3(3.42e-05)]_16 chrIV:4710567-4710647 1.46e-01 80 chrIV:9731491-9731571 2.93e-01 80 chrII:12520542-12520622 1.89e-02 31_[+1(4.11e-05)]_41 chrIV:2602902-2602982 9.42e-01 80 chrV:6222444-6222524 9.71e-01 80 chrII:5378912-5378992 9.01e-01 80 chrIII:11389508-11389588 5.52e-01 80 chrV:9628720-9628800 9.88e-01 80 chrII:12736740-12736820 9.18e-02 25_[+3(4.59e-05)]_47 chrII:13279630-13279710 9.02e-01 80 chrIII:11251869-11251949 6.69e-01 80 chrIV:1123306-1123386 3.46e-01 80 chrX:1488932-1489012 8.76e-01 80 chrIV:5937083-5937163 3.14e-01 80 chrIII:3957215-3957295 9.30e-01 80 chrIII:5683454-5683534 2.52e-01 55_[+3(8.46e-05)]_17 chrII:9934767-9934847 6.56e-01 80 chrV:14197776-14197856 8.96e-01 80 chrII:5575056-5575136 8.08e-01 80 chrX:12913521-12913601 2.70e-01 80 chrV:20234602-20234682 5.13e-02 54_[+1(2.04e-05)]_18 chrI:11745730-11745810 6.38e-01 80 chrI:134222-134302 2.07e-01 80 chrV:19520273-19520353 1.92e-01 80 chrX:14164396-14164476 3.98e-01 80 chrI:13359855-13359935 4.97e-01 80 chrII:13198321-13198401 9.82e-01 80 chrIV:4652601-4652681 3.79e-01 80 chrX:8801218-8801298 6.59e-01 80 chrIV:4471543-4471623 7.35e-01 80 chrIII:12607358-12607438 5.95e-01 80 chrV:6758353-6758433 1.04e-01 80 chrX:13764894-13764974 3.35e-01 80 chrII:11651081-11651161 5.10e-02 80 chrI:9106662-9106742 8.59e-02 80 chrV:2872161-2872241 9.09e-04 15_[+1(4.11e-05)]_4_[+2(1.74e-05)]_\ 45 chrIV:13083069-13083149 2.99e-01 80 chrII:7319675-7319755 7.13e-01 80 chrV:20498446-20498526 1.29e-02 4_[+2(3.67e-05)]_68 chrX:6536861-6536941 9.81e-01 80 chrIV:4413074-4413154 5.28e-02 30_[+3(3.42e-05)]_42 chrV:9618522-9618602 8.92e-01 80 chrII:11977505-11977585 2.55e-01 31_[+3(3.42e-05)]_41 chrI:14104031-14104111 3.81e-01 80 chrX:10396816-10396896 3.13e-02 24_[+2(6.82e-05)]_48 chrV:7858013-7858093 2.45e-02 42_[+1(2.04e-05)]_30 chrI:8866921-8867001 5.25e-02 7_[+2(6.82e-05)]_65 chrV:6344857-6344937 1.80e-02 41_[+4(9.78e-06)]_31 chrIV:2765185-2765265 9.85e-01 80 chrII:2987323-2987403 7.52e-02 59_[+3(3.42e-05)]_13 chrI:4646610-4646690 6.94e-01 80 chrI:9624517-9624597 7.79e-02 80 chrII:6252898-6252978 1.13e-01 80 chrIV:7962177-7962257 2.46e-01 80 chrX:13108800-13108880 2.52e-01 80 chrIII:11692503-11692583 1.18e-02 51_[+3(1.07e-05)]_21 chrII:9132445-9132525 4.91e-01 80 chrII:10448499-10448579 3.79e-01 80 chrIII:8806612-8806692 6.16e-01 80 chrIV:15049624-15049704 6.36e-01 80 chrX:6522876-6522956 3.58e-01 80 chrI:7602341-7602421 3.71e-01 80 chrIII:10245365-10245445 9.90e-01 80 chrII:10391239-10391319 6.36e-01 80 chrII:8133965-8134045 6.53e-02 31_[+2(3.67e-05)]_41 chrI:2686288-2686368 1.36e-02 64_[+1(2.04e-05)]_8 chrIV:13348756-13348836 1.72e-01 80 chrI:9970275-9970355 9.60e-01 80 chrIV:13398717-13398797 9.86e-01 80 chrV:15056540-15056620 8.47e-01 80 chrI:7869004-7869084 9.40e-01 80 chrIV:16168111-16168191 1.10e-01 80 chrV:10967002-10967082 1.47e-01 23_[+3(8.46e-05)]_49 chrIII:12428959-12429039 1.44e-01 80 chrI:2622977-2623057 1.20e-01 80 chrX:10667003-10667083 5.40e-01 80 chrII:12054732-12054812 8.49e-02 7_[+3(5.89e-05)]_65 chrII:12058450-12058530 3.91e-01 80 chrIV:11149060-11149140 8.97e-02 80 chrX:4218304-4218384 7.76e-02 80 chrII:290895-290975 2.38e-02 28_[+2(6.82e-05)]_44 chrV:7744239-7744319 2.21e-01 80 chrI:8765756-8765836 9.59e-01 80 chrX:17058430-17058510 9.79e-01 80 chrIII:1625837-1625917 4.29e-03 37_[+3(1.07e-05)]_35 chrI:13340341-13340421 9.74e-01 80 chrV:20267151-20267231 4.69e-01 80 chrI:4697747-4697827 9.61e-01 80 chrIII:7977319-7977399 9.55e-01 80 chrIII:10464689-10464769 9.55e-01 80 chrIII:10209822-10209902 5.84e-03 40_[+5(9.46e-06)]_32 chrII:12994199-12994279 7.40e-01 80 chrV:10238039-10238119 5.15e-01 80 chrII:12212061-12212141 4.46e-02 80 chrIII:5762013-5762093 1.20e-04 29_[+1(9.49e-05)]_31_[+5(9.46e-06)]_\ 4 chrX:12169562-12169642 9.80e-01 80 chrIV:1232545-1232625 1.89e-02 80 chrV:10343046-10343126 4.67e-01 80 chrV:13783301-13783381 7.97e-01 80 chrIV:15042405-15042485 2.62e-01 80 chrIV:5544876-5544956 7.47e-01 80 chrIV:13026945-13027025 9.77e-01 80 chrX:13351518-13351598 8.73e-01 80 chrIII:2811537-2811617 6.00e-02 39_[+2(1.74e-05)]_33 chrIII:9824620-9824700 3.77e-01 80 chrX:14500854-14500934 2.60e-02 55_[+2(6.82e-05)]_17 chrX:8017428-8017508 3.42e-01 80 chrI:13942466-13942546 1.99e-01 80 chrX:3118912-3118992 5.71e-01 80 chrIV:13367841-13367921 9.97e-01 80 chrIV:3382663-3382743 1.43e-01 80 chrII:10016248-10016328 7.05e-02 80 chrII:8037938-8038018 3.40e-01 80 chrIV:12197825-12197905 5.16e-01 80 chrI:9969491-9969571 8.44e-01 80 chrIII:4015773-4015853 9.48e-03 50_[+2(1.74e-05)]_22 chrIII:8979088-8979168 1.50e-01 55_[+2(3.67e-05)]_17 chrV:5582528-5582608 5.61e-01 80 chrX:8023858-8023938 9.80e-01 80 chrII:8878764-8878844 3.70e-01 80 chrX:15036473-15036553 5.85e-01 80 chrV:13908522-13908602 4.86e-01 80 chrIII:10817146-10817226 2.08e-02 80 chrI:14760917-14760997 3.61e-02 42_[+1(5.89e-05)]_30 chrV:9786771-9786851 5.78e-02 80 chrIII:12686520-12686600 9.92e-01 80 chrII:9886320-9886400 6.08e-01 80 chrII:7324079-7324159 3.32e-01 80 chrIII:7738092-7738172 9.00e-01 80 chrV:3714115-3714195 5.36e-03 58_[+3(1.07e-05)]_14 chrV:10968053-10968133 7.98e-01 80 chrII:9739016-9739096 6.99e-02 20_[+3(1.07e-05)]_52 chrI:5412568-5412648 2.24e-02 1_[+1(5.89e-05)]_71 chrII:14494146-14494226 6.51e-03 49_[+3(8.46e-05)]_23 chrV:2601907-2601987 8.61e-01 80 chrIV:12689782-12689862 8.91e-01 80 chrIV:7043644-7043724 1.49e-01 80 chrI:6788758-6788838 6.63e-01 80 chrI:14952650-14952730 6.13e-01 80 chrIV:2307587-2307667 9.70e-02 80 chrI:2065548-2065628 4.26e-03 11_[+5(9.46e-06)]_61 chrV:20164664-20164744 5.98e-02 80 chrII:9944186-9944266 2.23e-01 80 chrX:5101144-5101224 5.61e-01 80 chrII:14012429-14012509 9.74e-01 80 chrX:1337197-1337277 6.69e-01 80 chrIII:5321869-5321949 4.20e-01 80 chrI:5079666-5079746 8.38e-01 80 chrV:6019110-6019190 6.54e-01 80 chrII:8020726-8020806 5.77e-01 80 chrX:1142132-1142212 9.07e-01 80 chrV:15000421-15000501 1.08e-01 80 chrIII:2666451-2666531 1.61e-02 57_[+1(5.89e-05)]_15 chrIII:10405188-10405268 6.43e-01 80 chrII:6788246-6788326 1.56e-02 58_[+2(1.74e-05)]_14 chrII:4421962-4422042 7.28e-01 80 chrIV:6792467-6792547 7.26e-01 80 chrII:14155808-14155888 9.97e-01 80 chrV:3634905-3634985 1.69e-01 80 chrIII:9626730-9626810 1.37e-01 58_[+1(2.04e-05)]_14 chrIII:7329467-7329547 7.76e-01 80 chrIV:358895-358975 3.89e-02 70_[+1(4.11e-05)]_2 chrIV:761909-761989 7.36e-01 80 chrIV:15038959-15039039 5.54e-01 80 chrII:12518983-12519063 8.34e-01 80 chrI:3986743-3986823 9.66e-01 80 chrII:4094451-4094531 1.00e+00 80 chrIII:13527913-13527993 5.43e-02 80 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chrII:6587460-6587540 1.87e-01 80 chrIV:7730944-7731024 9.83e-01 80 chrIII:10819887-10819967 1.98e-01 80 chrII:5341197-5341277 2.67e-01 80 chrI:14936607-14936687 7.83e-01 80 chrV:13567004-13567084 7.17e-01 80 chrIII:3790027-3790107 9.67e-01 80 chrIII:11694433-11694513 5.36e-01 80 chrIV:13701634-13701714 8.53e-03 80 chrIII:11091120-11091200 3.84e-01 80 chrI:3161362-3161442 7.52e-01 80 chrV:20848004-20848084 7.38e-01 80 chrII:5202081-5202161 5.04e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************