******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ces-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:9772127-9772207 1.0000 80 chrV:9768962-9769042 1.0000 80 chrX:13246829-13246909 1.0000 80 chrV:8254064-8254144 1.0000 80 chrI:277180-277260 1.0000 80 chrII:14470187-14470267 1.0000 80 chrI:14838039-14838119 1.0000 80 chrX:10151082-10151162 1.0000 80 chrI:6806768-6806848 1.0000 80 chrX:11570121-11570201 1.0000 80 chrI:4222496-4222576 1.0000 80 chrV:1223703-1223783 1.0000 80 chrII:6116875-6116955 1.0000 80 chrIV:11431596-11431676 1.0000 80 chrII:354648-354728 1.0000 80 chrV:9771470-9771550 1.0000 80 chrV:13165396-13165476 1.0000 80 chrII:10696237-10696317 1.0000 80 chrV:12818622-12818702 1.0000 80 chrX:9805617-9805697 1.0000 80 chrV:20872113-20872193 1.0000 80 chrX:4424406-4424486 1.0000 80 chrX:3901562-3901642 1.0000 80 chrI:4795896-4795976 1.0000 80 chrII:7338123-7338203 1.0000 80 chrX:12549220-12549300 1.0000 80 chrV:13294674-13294754 1.0000 80 chrX:10619967-10620047 1.0000 80 chrX:2519023-2519103 1.0000 80 chrII:10999251-10999331 1.0000 80 chrX:5278408-5278488 1.0000 80 chrV:13114698-13114778 1.0000 80 chrI:9568496-9568576 1.0000 80 chrX:12479198-12479278 1.0000 80 chrIV:7542748-7542828 1.0000 80 chrIII:4103327-4103407 1.0000 80 chrIV:10188653-10188733 1.0000 80 chrIII:2904331-2904411 1.0000 80 chrI:2157247-2157327 1.0000 80 chrII:6190952-6191032 1.0000 80 chrX:5723941-5724021 1.0000 80 chrX:8391645-8391725 1.0000 80 chrI:11655418-11655498 1.0000 80 chrV:9763918-9763998 1.0000 80 chrIII:9867495-9867575 1.0000 80 chrI:13041787-13041867 1.0000 80 chrX:14638492-14638572 1.0000 80 chrX:14696079-14696159 1.0000 80 chrI:10283693-10283773 1.0000 80 chrIV:11723420-11723500 1.0000 80 chrX:15742580-15742660 1.0000 80 chrI:272681-272761 1.0000 80 chrIV:10571194-10571274 1.0000 80 chrV:10818618-10818698 1.0000 80 chrX:13509097-13509177 1.0000 80 chrIV:14960236-14960316 1.0000 80 chrV:3452612-3452692 1.0000 80 chrII:6393810-6393890 1.0000 80 chrIII:3224251-3224331 1.0000 80 chrX:3040161-3040241 1.0000 80 chrX:6691819-6691899 1.0000 80 chrII:8588595-8588675 1.0000 80 chrX:10011837-10011917 1.0000 80 chrX:13170963-13171043 1.0000 80 chrIV:5533718-5533798 1.0000 80 chrIII:13123608-13123688 1.0000 80 chrX:15548060-15548140 1.0000 80 chrIII:4132304-4132384 1.0000 80 chrX:2922964-2923044 1.0000 80 chrIII:6838179-6838259 1.0000 80 chrX:5975403-5975483 1.0000 80 chrI:3426016-3426096 1.0000 80 chrI:7418068-7418148 1.0000 80 chrV:3451789-3451869 1.0000 80 chrX:6390122-6390202 1.0000 80 chrIII:8744170-8744250 1.0000 80 chrIV:9655715-9655795 1.0000 80 chrI:1653571-1653651 1.0000 80 chrX:14652227-14652307 1.0000 80 chrX:3619001-3619081 1.0000 80 chrII:10084634-10084714 1.0000 80 chrX:305196-305276 1.0000 80 chrI:8263001-8263081 1.0000 80 chrIV:17233653-17233733 1.0000 80 chrV:9605250-9605330 1.0000 80 chrV:11337028-11337108 1.0000 80 chrX:14959826-14959906 1.0000 80 chrI:11656597-11656677 1.0000 80 chrI:9502682-9502762 1.0000 80 chrX:5131909-5131989 1.0000 80 chrV:13020167-13020247 1.0000 80 chrX:6705286-6705366 1.0000 80 chrIII:8877154-8877234 1.0000 80 chrI:9475704-9475784 1.0000 80 chrI:4930325-4930405 1.0000 80 chrIII:5402588-5402668 1.0000 80 chrX:11328884-11328964 1.0000 80 chrX:5983370-5983450 1.0000 80 chrI:782758-782838 1.0000 80 chrI:7885984-7886064 1.0000 80 chrI:5938851-5938931 1.0000 80 chrX:8652518-8652598 1.0000 80 chrII:6493303-6493383 1.0000 80 chrX:5869761-5869841 1.0000 80 chrV:20645639-20645719 1.0000 80 chrX:9373848-9373928 1.0000 80 chrX:2519694-2519774 1.0000 80 chrIII:2921019-2921099 1.0000 80 chrI:14257221-14257301 1.0000 80 chrIV:6363741-6363821 1.0000 80 chrX:11345687-11345767 1.0000 80 chrX:11406033-11406113 1.0000 80 chrI:8782604-8782684 1.0000 80 chrI:14068131-14068211 1.0000 80 chrX:14662627-14662707 1.0000 80 chrV:12210125-12210205 1.0000 80 chrX:2725924-2726004 1.0000 80 chrIV:2537892-2537972 1.0000 80 chrV:13812458-13812538 1.0000 80 chrIII:6073065-6073145 1.0000 80 chrV:9977397-9977477 1.0000 80 chrV:10721472-10721552 1.0000 80 chrI:9570695-9570775 1.0000 80 chrII:8152857-8152937 1.0000 80 chrV:9768084-9768164 1.0000 80 chrX:11744752-11744832 1.0000 80 chrV:19354653-19354733 1.0000 80 chrI:794391-794471 1.0000 80 chrV:13707421-13707501 1.0000 80 chrIV:1212500-1212580 1.0000 80 chrX:3875890-3875970 1.0000 80 chrIII:3588357-3588437 1.0000 80 chrX:9978265-9978345 1.0000 80 chrX:8770489-8770569 1.0000 80 chrIII:3414562-3414642 1.0000 80 chrV:9765104-9765184 1.0000 80 chrV:14854403-14854483 1.0000 80 chrIV:13763591-13763671 1.0000 80 chrI:801458-801538 1.0000 80 chrII:14098535-14098615 1.0000 80 chrIII:6110343-6110423 1.0000 80 chrV:1227901-1227981 1.0000 80 chrI:798769-798849 1.0000 80 chrIII:11358431-11358511 1.0000 80 chrV:10816982-10817062 1.0000 80 chrI:453625-453705 1.0000 80 chrIV:7272879-7272959 1.0000 80 chrX:13876081-13876161 1.0000 80 chrIII:10583633-10583713 1.0000 80 chrI:14608280-14608360 1.0000 80 chrV:12330202-12330282 1.0000 80 chrV:20220768-20220848 1.0000 80 chrIV:962022-962102 1.0000 80 chrIII:8284973-8285053 1.0000 80 chrIV:1034312-1034392 1.0000 80 chrX:6964030-6964110 1.0000 80 chrII:4574831-4574911 1.0000 80 chrI:14831276-14831356 1.0000 80 chrX:15041495-15041575 1.0000 80 chrI:11134952-11135032 1.0000 80 chrIII:3136745-3136825 1.0000 80 chrX:3181503-3181583 1.0000 80 chrV:13027653-13027733 1.0000 80 chrIV:11717638-11717718 1.0000 80 chrII:14644626-14644706 1.0000 80 chrIV:3860581-3860661 1.0000 80 chrX:4426657-4426737 1.0000 80 chrIV:4567933-4568013 1.0000 80 chrIV:5109118-5109198 1.0000 80 chrX:7679996-7680076 1.0000 80 chrIV:563565-563645 1.0000 80 chrII:14432240-14432320 1.0000 80 chrV:1252918-1252998 1.0000 80 chrII:12711654-12711734 1.0000 80 chrV:11279253-11279333 1.0000 80 chrV:10880293-10880373 1.0000 80 chrIII:4028224-4028304 1.0000 80 chrV:1244459-1244539 1.0000 80 chrX:5564117-5564197 1.0000 80 chrIII:1733566-1733646 1.0000 80 chrI:11126457-11126537 1.0000 80 chrV:9157710-9157790 1.0000 80 chrX:14694818-14694898 1.0000 80 chrX:4128846-4128926 1.0000 80 chrI:273832-273912 1.0000 80 chrX:3202508-3202588 1.0000 80 chrV:12748005-12748085 1.0000 80 chrV:13114099-13114179 1.0000 80 chrII:12067601-12067681 1.0000 80 chrV:13681595-13681675 1.0000 80 chrV:7816691-7816771 1.0000 80 chrI:7332861-7332941 1.0000 80 chrX:8648705-8648785 1.0000 80 chrX:17170553-17170633 1.0000 80 chrIII:8276930-8277010 1.0000 80 chrX:9803771-9803851 1.0000 80 chrIV:3667966-3668046 1.0000 80 chrV:8716359-8716439 1.0000 80 chrV:12205528-12205608 1.0000 80 chrIII:3970547-3970627 1.0000 80 chrX:3584629-3584709 1.0000 80 chrV:19177228-19177308 1.0000 80 chrX:3201359-3201439 1.0000 80 chrIII:612064-612144 1.0000 80 chrII:11032972-11033052 1.0000 80 chrI:2755500-2755580 1.0000 80 chrIII:11359616-11359696 1.0000 80 chrI:2697205-2697285 1.0000 80 chrX:15125260-15125340 1.0000 80 chrIV:8096558-8096638 1.0000 80 chrII:11027971-11028051 1.0000 80 chrV:7171468-7171548 1.0000 80 chrII:6454463-6454543 1.0000 80 chrIV:3096279-3096359 1.0000 80 chrX:13021617-13021697 1.0000 80 chrI:11136486-11136566 1.0000 80 chrII:4129591-4129671 1.0000 80 chrII:10038714-10038794 1.0000 80 chrIV:10195789-10195869 1.0000 80 chrII:4579495-4579575 1.0000 80 chrI:10169455-10169535 1.0000 80 chrX:757031-757111 1.0000 80 chrIV:5927947-5928027 1.0000 80 chrII:7719153-7719233 1.0000 80 chrI:7716697-7716777 1.0000 80 chrV:1313420-1313500 1.0000 80 chrIII:10018160-10018240 1.0000 80 chrIV:6547571-6547651 1.0000 80 chrX:2045726-2045806 1.0000 80 chrIII:1131719-1131799 1.0000 80 chrII:11499625-11499705 1.0000 80 chrIII:8289335-8289415 1.0000 80 chrI:816383-816463 1.0000 80 chrX:6970312-6970392 1.0000 80 chrIV:8056935-8057015 1.0000 80 chrIII:4524214-4524294 1.0000 80 chrIII:4967398-4967478 1.0000 80 chrIV:10572245-10572325 1.0000 80 chrI:10389775-10389855 1.0000 80 chrII:14938504-14938584 1.0000 80 chrII:7594416-7594496 1.0000 80 chrII:8301976-8302056 1.0000 80 chrX:8445082-8445162 1.0000 80 chrV:16749657-16749737 1.0000 80 chrV:11342071-11342151 1.0000 80 chrI:4008894-4008974 1.0000 80 chrI:790516-790596 1.0000 80 chrIV:5811623-5811703 1.0000 80 chrIII:989672-989752 1.0000 80 chrI:7517528-7517608 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ces-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ces-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.308 C 0.201 G 0.194 T 0.297 Background letter frequencies (from file dataset with add-one prior applied): A 0.308 C 0.201 G 0.194 T 0.297 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AATTSAAT MEME-1 width = 8 sites = 235 llr = 1329 E-value = 1.1e-087 ******************************************************************************** -------------------------------------------------------------------------------- Motif AATTSAAT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 8a::269: pos.-specific C 1:1241:: probability G :::1321: matrix T 1:9711:a bits 2.4 2.1 1.9 1.7 * * Relative 1.4 * ** Entropy 1.2 ** ** (8.2 bits) 0.9 *** ** 0.7 **** ** 0.5 **** *** 0.2 ******** 0.0 -------- Multilevel AATTCAAT consensus GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATTSAAT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:989672-989752 34 9.31e-05 ACTTTTTTGA AATTCAAT TTATTTCGCG chrV:16749657-16749737 23 9.31e-05 CCTGCCAAAA AATTCAAT TATCCCGCCC chrX:8445082-8445162 26 9.31e-05 ATCAAAGAAT AATTGAAT CTGAACACAT chrII:7594416-7594496 36 9.31e-05 ACACCATCGA AATTGAAT TTCTCAAGAA chrX:2045726-2045806 73 9.31e-05 ACTCCACGCT AATTCAAT chrIV:5927947-5928027 47 9.31e-05 GTCAATTTCT AATTGAAT TTGGAAGAAG chrIV:10195789-10195869 20 9.31e-05 CTCTAAAGTG AATTGAAT GTGGAGACAC chrII:10038714-10038794 20 9.31e-05 ACGAGAATTA AATTGAAT TGGATTGACA chrX:13021617-13021697 10 9.31e-05 TACCGCAAT AATTCAAT TTTCCAGAGA chrIV:3096279-3096359 69 9.31e-05 CTCCGAAATA AATTGAAT CAAA chrX:15125260-15125340 62 9.31e-05 ATTTCATTAT AATTGAAT AACTGAAACA chrIII:612064-612144 2 9.31e-05 T AATTGAAT TGTCTCGGAG chrV:12205528-12205608 14 9.31e-05 CGAATATGAT AATTCAAT TATCATGAGC chrV:11279253-11279333 38 9.31e-05 GTCTAATTCT AATTCAAT CAACTGTTTG chrIV:4567933-4568013 31 9.31e-05 CTAATGAACC AATTGAAT TGGAACTCAA chrIV:11717638-11717718 53 9.31e-05 CAATTTCGTT AATTCAAT CTCATAGTGG chrV:13027653-13027733 42 9.31e-05 ACACTCGTAA AATTGAAT GTTGGCAAGA chrV:1227901-1227981 68 9.31e-05 GGAGGGGGCA AATTGAAT TGCGG chrIV:13763591-13763671 63 9.31e-05 TTGGCAGTTG AATTGAAT AACGTGTCTG chrV:19354653-19354733 31 9.31e-05 TAATTATAGT AATTGAAT TGAAGAAAAT chrII:8152857-8152937 42 9.31e-05 GTTTCCGCGA AATTCAAT TTCGTGGCCA chrIV:2537892-2537972 44 9.31e-05 GCTCCTTGAC AATTGAAT TTTCGATAAC chrX:14662627-14662707 65 9.31e-05 AAATCAAGTC AATTCAAT TCAAATAT chrX:11406033-11406113 34 9.31e-05 GCATCGTGTA AATTCAAT AGAAGGGAAC chrIII:8877154-8877234 8 9.31e-05 GGAAAAC AATTGAAT ATAGACGGCA chrV:11337028-11337108 43 9.31e-05 TTTCTAGGAC AATTCAAT TTCGTTTTCG chrI:8263001-8263081 21 9.31e-05 CAAGAATCCT AATTGAAT TTTACGAACA chrI:1653571-1653651 38 9.31e-05 GAAATTGAAC AATTGAAT CTGGTTCCAC chrIV:9655715-9655795 29 9.31e-05 ATATAATAAT AATTCAAT TTGTTGGCCG chrIII:8744170-8744250 25 9.31e-05 ttctCCCCGT AATTCAAT CGAGTCGAGT chrV:3452612-3452692 45 9.31e-05 AATCAAGTAA AATTCAAT CATAAGCTTA chrIV:14960236-14960316 5 9.31e-05 CGCA AATTCAAT TTTTGCCTCC chrX:14696079-14696159 71 9.31e-05 TAGATTTGTA AATTGAAT CA chrX:14638492-14638572 50 9.31e-05 ATCGACTAGC AATTCAAT TCACAAATCT chrIII:9867495-9867575 38 9.31e-05 GAGGGCATAC AATTCAAT TTCGTGACGG chrI:11655418-11655498 43 9.31e-05 aaatgaaata aattgaaT TTCGTAGAAT chrII:6190952-6191032 35 9.31e-05 CCCTCACCGA AATTGAAT TGTATGAAAT chrIV:10188653-10188733 56 9.31e-05 AAACACTTGA AATTCAAT TGTGACCGCC chrIV:7542748-7542828 59 9.31e-05 ACTCCGAACG AATTCAAT TTAAAGAGTT chrX:12479198-12479278 17 9.31e-05 CCTCGTACAT AATTCAAT GCCATAGTAA chrV:20872113-20872193 71 9.31e-05 TCACTAAAAT AATTGAAT CA chrV:13165396-13165476 33 9.31e-05 GAAAGTAATC AATTCAAT TGAATATAAA chrIV:11431596-11431676 22 9.31e-05 CAATAACTGT AATTCAAT TCCTAGACGT chrX:10151082-10151162 50 9.31e-05 GCGCTTTCCT AATTGAAT CAGTAGCTGG chrI:277180-277260 36 9.31e-05 TCGGCTTCTA AATTCAAT TTCCCCCCGT chrI:7517528-7517608 56 1.52e-04 CTTCAGAGGC AATTCGAT TCATTTAGCA chrI:790516-790596 36 1.52e-04 TTGATTGTTT AATTCGAT TCAGGGCACC chrIII:10018160-10018240 32 1.52e-04 CGAATGTTCA AATTCGAT TAAGTCTCTC chrIV:5109118-5109198 29 1.52e-04 ATATGGCAGA AATTCGAT TAACTCTCCC chrI:14831276-14831356 57 1.52e-04 AGATGAGGCT AATTGGAT GTGTGTCATC chrV:10816982-10817062 18 1.52e-04 GCATCCGCAA AATTCGAT TTGCAGTTCA chrV:9765104-9765184 52 1.52e-04 CTGCAAACAA AATTGGAT TACTCGAGAA chrIII:3414562-3414642 20 1.52e-04 TGCCGAATTA AATTCGAT TCTCATACTA chrX:9978265-9978345 53 1.52e-04 GGCTCAGCAT AATTCGAT AATGTTGGCA chrV:13812458-13812538 27 1.52e-04 TTCGAACCGG AATTCGAT TTATAACAAG chrII:6493303-6493383 69 1.52e-04 CATTGTCAAT AATTCGAT TTCC chrX:14652227-14652307 56 1.52e-04 TTGTCGCGGA AATTCGAT TGACTCAAGG chrIV:5533718-5533798 73 1.52e-04 AAATTGAAGA AATTGGAT chrV:9763918-9763998 42 1.52e-04 ACTTAACTTT AATTCGAT TTTGCAAAAA chrIII:8289335-8289415 23 2.15e-04 TTTATGCCAT AATCCAAT TAACGAAGAG chrIII:1131719-1131799 61 2.15e-04 CGGGCCCCGT AATCGAAT TGTCCGGTTT chrII:7719153-7719233 58 2.15e-04 GCTCCTCACA AATCCAAT TGTCCATTTT chrII:4129591-4129671 23 2.15e-04 CTCGGAGCAA AATCGAAT TAAAGAAGTG chrV:19177228-19177308 3 2.15e-04 CC AATCGAAT TATGAAGTCG chrIII:3970547-3970627 37 2.15e-04 CCGAGTCACA AATCGAAT TAGCACTCCT chrIII:1733566-1733646 62 2.15e-04 GAATTGAGGA AATCCAAT AAGAAACACA chrV:1244459-1244539 54 2.15e-04 TCTACCGAAA AATCCAAT TAAAATTTTT chrI:453625-453705 23 2.15e-04 CTTTTTTCTG AATCGAAT TGGCTTATTG chrII:14098535-14098615 1 2.15e-04 . AATCCAAT TTTGTCTTCC chrX:11328884-11328964 58 2.15e-04 GATGCACACT AATCCAAT TTTTTGTCTA chrI:7418068-7418148 26 2.15e-04 TTTGTCTCCA AATCCAAT TTGCTTTCCG chrX:10011837-10011917 42 2.15e-04 CATTGAGAGT AATCGAAT ATAAAATTAG chrI:4795896-4795976 14 2.15e-04 TGTGTGTATA AATCCAAT TTGTAGGCGA chrX:3901562-3901642 15 2.15e-04 AGGAGCAGCA AATCGAAT TTCTCCAGAT chrI:4222496-4222576 56 2.15e-04 CGAGCCGCTA AATCGAAT TTgaaaaaga chrI:11136486-11136566 25 2.87e-04 AACAGGGGGA AATTAAAT TATATTTGGA chrII:12067601-12067681 8 2.87e-04 TTCAGTA AATTAAAT TTTTAATTTG chrV:20220768-20220848 69 2.87e-04 TGTTTAACGC AATTAAAT GTGT chrI:8782604-8782684 26 2.87e-04 ttctatattg aattaaat ttcaaccata chrX:5131909-5131989 22 2.87e-04 GCGGCACCAA AATTAAAT TTGACGTCTT chrV:13114698-13114778 56 2.87e-04 CGGAAGCCCT AATTAAAT TGGTAGGTTT chrX:5278408-5278488 69 2.87e-04 ATGCTCAATC AATTAAAT ATTT chrI:2697205-2697285 60 4.18e-04 TCCACTTCTT AATTGCAT TTATTCATTT chrIII:3136745-3136825 13 4.18e-04 GTCCTACTCC AATTCCAT TAAATTCTTG chrI:14068131-14068211 30 4.18e-04 ACAATACTAA AATTTAAT TACTTTTCCA chrX:11345687-11345767 43 4.18e-04 TTCCGCCAAC AATTTAAT TATGCCCCAG chrI:13041787-13041867 34 4.18e-04 GGCGGCGAGT AATTTAAT TAGAAAAGTA chrX:11570121-11570201 58 4.18e-04 TAATAGTCAT AATTTAAT CGTTCGCGAG chrX:13246829-13246909 5 4.18e-04 AGCT AATTTAAT TTCAAAAATT chrX:6970312-6970392 8 5.19e-04 CTTCCGA AATGCAAT TTGCAAGCAT chrI:7716697-7716777 69 5.19e-04 GTCAAAACAT AATGCAAT TCAT chrII:6454463-6454543 33 5.19e-04 TGATGGAGTA AATCCGAT GCTCTCTCAT chrV:10721472-10721552 56 5.19e-04 CTCTCCAGTA AATGGAAT AAATTACCGA chrX:2725924-2726004 13 5.19e-04 CCAGTCAGAC AATGCAAT CAAGAAATAA chrV:13020167-13020247 70 5.19e-04 CTGGAAAAAT AATGCAAT TTT chrX:15548060-15548140 19 5.19e-04 TCAATTACCT AATGCAAT TTACTAGAGT chrX:3040161-3040241 54 5.19e-04 GATGCAAGTA AATCGGAT TTTCCAAAAG chrX:9803771-9803851 53 5.64e-04 AGCTTCATCA AATTAGAT TACGTGGTTC chrV:13681595-13681675 24 5.64e-04 TGATGCTGAA AATTAGAT TTAGTCAAAA chrV:13294674-13294754 60 5.64e-04 AAAAATGATG AATTAGAT TAGATCAACG chrII:6116875-6116955 60 5.64e-04 ACTGTGATGG AATTAGAT GAGCCAAGAA chrV:12748005-12748085 35 6.09e-04 CTGAATAGAA AATTTGAT TTCGTGGGAA chrX:305196-305276 47 6.09e-04 TTAGTTTGGA AATTTGAT TTCTGCATGT chrI:2755500-2755580 30 7.06e-04 CATGGAGACA AATGCGAT TACCCACCAC chrII:11032972-11033052 58 7.06e-04 GGCCTGCTAA AATGGGAT TACTGTAATG chrV:1252918-1252998 66 7.06e-04 CAATGAGCAT AATGGGAT TTATTTG chrIV:563565-563645 40 7.06e-04 AAATGGGGAT AATTGAGT TGGGTTTTCC chrX:2519694-2519774 17 7.06e-04 TTATACCGAT AATTCAGT TTGGCATATC chrIII:5402588-5402668 39 7.06e-04 GGTGCTCGTA AATTGAGT TGTTCACCCT chrX:2922964-2923044 32 7.06e-04 CCAAGCCCTT AATTCAGT TTCGCCTTTT chrI:9568496-9568576 35 7.06e-04 GTACTCGAGT AATGGGAT TGAGCATATG chrV:8254064-8254144 38 7.06e-04 GCAGTGGTGA AATGCGAT GAATGCGGAG chrIV:10572245-10572325 71 7.95e-04 TTAGAGCTCT AATTCTAT TT chrX:4128846-4128926 45 7.95e-04 GGACCGTTAT AATTGTAT TTGGGAATGG chrI:11126457-11126537 7 7.95e-04 CAACGT AATTGTAT TAGGATCTTG chrI:9570695-9570775 11 7.95e-04 cGGCACTTAT AATTGTAT GGCTAATTAC chrX:6390122-6390202 9 7.95e-04 AGGGAGTT AATTGTAT ATTCTGTTGT chrI:10283693-10283773 32 7.95e-04 GTTTTCCAAC AATTCTAT TTATTTGCAC chrII:14470187-14470267 43 7.95e-04 GCCCAAGCCC AATTGTAT TATCCCTCCT chrII:14938504-14938584 50 9.68e-04 AGTTTCGAAT AATCAAAT TCTGCAAATT chrIV:8056935-8057015 61 9.68e-04 CGGTCTTCCG CATTCAAT GCTAATGACT chrII:11499625-11499705 31 9.68e-04 GTAAACGGAT AACTGAAT CATAACAAGG chrX:3584629-3584709 38 9.68e-04 GAGATGGGTT AACTCAAT TTAAAGTCTA chrV:8716359-8716439 33 9.68e-04 AACCGCTTCA AACTCAAT TTGTGTCCCT chrX:17170553-17170633 42 9.68e-04 GGCTTGTCCA AATCAAAT GAACAATGAG chrX:7679996-7680076 10 9.68e-04 TTTCTCAAC AACTCAAT TGTAGGCTAG chrI:11134952-11135032 19 9.68e-04 TCACAAATTT CATTCAAT TTTATTCATT chrV:12330202-12330282 73 9.68e-04 AATATTAATA AACTCAAT chrIII:10583633-10583713 48 9.68e-04 AGCGAAACAT AATCAAAT AAACGCCTTT chrIII:3588357-3588437 22 9.68e-04 AATTTCGTGT CATTCAAT TATATCATAA chrV:9977397-9977477 48 9.68e-04 ATTGCGAATT AACTGAAT TTTTCCTTTT chrI:5938851-5938931 65 9.68e-04 TATCTACAAC AACTCAAT TAGTACCT chrI:4930325-4930405 49 9.68e-04 AATGTCCTTC AATCAAAT TTCGGTCCCC chrX:6705286-6705366 38 9.68e-04 AATGTGCACA AATCAAAT CGTCGATGCT chrI:3426016-3426096 35 9.68e-04 CCTCGACGCA AACTCAAT TTTCAGTGCG chrIII:13123608-13123688 64 9.68e-04 TTTTGAGGAG CATTGAAT AAGGAAATG chrI:2157247-2157327 15 9.68e-04 GAAAGTGGGG AATCAAAT CATTCCATCT chrIII:4103327-4103407 21 9.68e-04 TGCATACTCT AACTCAAT TATGCGTTCG chrV:12818622-12818702 29 9.68e-04 TCAGCACTAG AACTCAAT TTGCAGTGGG chrV:9768962-9769042 29 9.68e-04 AGCATCTAAC AATCAAAT TTCCATAATG chrII:4574831-4574911 58 1.06e-03 CGCTCGGACA TATTCAAT TAGTCAGTCG chrII:10084634-10084714 21 1.06e-03 ACCCCATTTT TATTGAAT TGTACACAAA chrX:5975403-5975483 45 1.06e-03 TTTATTCGAT TATTGAAT TTGACAGACA chrX:4424406-4424486 1 1.06e-03 . TATTCAAT TACTGTTCCA chrV:9771470-9771550 3 1.06e-03 TT TATTGAAT GATACTAATC chrV:1223703-1223783 62 1.06e-03 cattattcat tattcaat attcattatt chrI:14838039-14838119 29 1.06e-03 ACCCTTATTT TATTCAAT TTCAAGAGAC chrIV:3860581-3860661 49 1.18e-03 AGAAGGGGGT AATCTAAT TGAGAAGATA chrIV:1034312-1034392 60 1.18e-03 AGGAGGAGGA AATTCGGT TTTACAAGGA chrIII:11358431-11358511 56 1.18e-03 CCGCCTCCCT AATTGGGT TAGTTATGCT chrI:782758-782838 23 1.18e-03 CCAATTTCCC AATCCCAT GTACTCCTAC chrX:14959826-14959906 53 1.18e-03 AATGAAAGAT AATCTAAT AGAGGGTCAA chrIV:11723420-11723500 41 1.18e-03 tGCCACCCTC AATTGGGT TATCTTCTAA chrX:10619967-10620047 49 1.18e-03 ATTTTCACAA AATCTAAT TGTAAACTCA chrV:11342071-11342151 12 1.23e-03 TATCACAGTG AATTACAT GCATGCGGAG chrI:9502682-9502762 52 1.23e-03 CTCCTCCAAA AATTACAT TAGCATGTGT chrI:272681-272761 63 1.23e-03 ACTGCACTAG AATTACAT TTTAAGAATA chrIV:6547571-6547651 35 1.39e-03 ACAATTTCCG AATGAAAT AGTATATAAA chrV:1313420-1313500 40 1.39e-03 GAAGGAGTAC AATGAAAT TAGGGGGCGA chrI:10169455-10169535 71 1.39e-03 GTCGCGCGCA AATCAGAT TG chrX:3181503-3181583 4 1.39e-03 CCA AATGAAAT Aaagaagaga chrX:5983370-5983450 46 1.39e-03 TACACTACTA AACTCGAT TACCGAACAG chrV:10818618-10818698 66 1.39e-03 TCACTAACAA CATTCGAT ATACCAA chrX:3201359-3201439 52 1.49e-03 CCCGTCTCCT TATTGGAT TATTGAAATG chrI:14608280-14608360 42 1.49e-03 actcgttcca tattggat tagattttaa chrI:798769-798849 1 1.49e-03 . AATTTCAT TTCGCGCGCG chrX:8770489-8770569 20 1.49e-03 TCCACCCCTT AATTTCAT AGTCTCCCGA chrI:794391-794471 14 1.49e-03 GACTAGTCAA AATTTCAT CAATTTTCTA chrX:8391645-8391725 72 1.49e-03 TTCTACTTTT AATTTCAT T chrX:5723941-5724021 69 1.49e-03 TAATATTCTA AATTTCAT TACT chrII:8301976-8302056 25 1.60e-03 ACGAAAATAA AATGGCAT GGAAAAGCAG chrX:757031-757111 38 1.60e-03 GCTCTTTGTA AATGTAAT TTACTTCGGC chrX:6964030-6964110 73 1.60e-03 AGGAGAGAAT AATCTGAT chrV:9768084-9768164 55 1.60e-03 TGATTCCGCA AATCTGAT ATATTCTGAT chrIV:17233653-17233733 31 1.64e-03 GTAAATACAA AATCGAGT TAGGTCTTCT chrX:5564117-5564197 15 1.78e-03 AGCATAACCA AATTAAGT CAGTGTACAG chrX:3875890-3875970 26 1.78e-03 GATCGATGTA AATCGTAT TTCCCCTCGC chrI:4008894-4008974 16 1.99e-03 CATAAGAGTT GATTCAAT TGTGCCACCG chrII:8588595-8588675 30 1.99e-03 AGAGAATTTA GATTGAAT TACCATCTGT chrI:6806768-6806848 3 1.99e-03 TC AATTATAT TAGTCCTTTC chrI:816383-816463 41 2.26e-03 TCAAGACCCG AATGTGAT AGATGTGCCG chrV:10880293-10880373 3 2.26e-03 TT AATTCCGT CTGTAACCCT chrV:12210125-12210205 47 2.26e-03 ACTATTGAGA AATGTGAT TAACCACCAC chrIII:2904331-2904411 12 2.26e-03 TTCAGAACCA CATTAAAT GCAAATGATT chrII:10999251-10999331 26 2.26e-03 GTTAATAATA AATTGCGT TATATTAGGT chrII:7338123-7338203 34 2.26e-03 AGATTTACAT AACTAAAT TTAACCCGAG chrIII:4028224-4028304 7 2.56e-03 ATGAGA AATGGAGT TTAAAGGCGC chrII:14644626-14644706 66 2.56e-03 AGAGCATACC AATTTTAT TCACTGT chrIV:7272879-7272959 35 2.56e-03 GGACGCTGTT AAATGAAT TTTCGGAGGC chrX:11744752-11744832 27 2.56e-03 TTCCATGTGT AAATGAAT TTGTCAATTT chrX:8652518-8652598 49 2.56e-03 GAACATGTCT AAATGAAT TACCTCGAAA chrX:3619001-3619081 52 2.56e-03 GAGAGGGGCT AAATCAAT TCATAGTGAA chrX:6691819-6691899 59 2.56e-03 ACGGAGACTT AATGCAGT TAGCATACGG chrIV:3667966-3668046 16 2.95e-03 TCCGCTTCAC AATAGAAT AATGCACTTC chrI:14257221-14257301 57 2.95e-03 GTCCTTCAGA AATAGAat ttatttcatt chrI:9475704-9475784 25 2.95e-03 TGGCACGGCA AATTAGGT TGATGGAAGT chrIII:4132304-4132384 33 2.95e-03 aaggagaGCA CATTTAAT TTCGTTAGCG chrX:13509097-13509177 23 2.95e-03 ACACATCAAT AATCACAT TTAGGGTGTC chrIV:10571194-10571274 56 2.95e-03 TCTAATTGAT AATTAGGT GTTTGTGGTG chrX:15742580-15742660 54 2.95e-03 AAAAGTCGAA AACTGCAT TATTTGTGAC chrII:10696237-10696317 30 2.95e-03 TTTTGAGTCT CATTTAAT TAAGAAAGTC chrII:354648-354728 13 2.95e-03 TCCGGCGGTT AATAGAAT TGTCGAAATA chrIV:5811623-5811703 56 3.25e-03 TACGGGAGAT GATTGGAT TATGTATAAG chrI:273832-273912 48 3.25e-03 ATGCAGATTT TATTGCAT TTTAGTGCGC chrI:11656597-11656677 36 3.25e-03 ATTATCAAAT TATTCCAT CCTCCTCGTC chrIV:6363741-6363821 61 3.46e-03 TAAATGCGTA AATCTCAT TTTGCACATC chrIII:4967398-4967478 62 3.59e-03 TCTATAAGAT TATTAGAT TTTCTCCTCT chrIII:4524214-4524294 51 3.59e-03 GAGAGAGCGT AAATGGAT CAATTCCAAT chrIII:3224251-3224331 28 3.59e-03 GATTGGCTGT TATTAGAT TGCCCCTTGG chrX:13876081-13876161 9 3.80e-03 CTGTCGCT AATTGTGT TAGTATCGGT chrV:9605250-9605330 42 3.80e-03 CGTCCCCCCG AACTTGAT CTAATTACAA chrX:15041495-15041575 41 4.00e-03 CAAGCCCCCC TATTTGAT TATCCTAATC chrV:20645639-20645719 37 4.00e-03 AATTTCACTT TATTTGAT TTGCAGAGGA chrV:14854403-14854483 48 4.33e-03 ATACCACCAT AATCATAT TTAGCCTAAG chrI:7332861-7332941 44 4.63e-03 GTATCTCTCT TATTCTAT TCCTTTTTTC chrX:9373848-9373928 7 4.63e-03 ATCTCT TATTCTAT GCGTGATTTG chrV:7816691-7816771 24 5.25e-03 CAATTGGAGA AACCTAAT GTCGCGAAGA chrII:14432240-14432320 22 5.65e-03 TATACAACAA AATAAAAT ACAAGAAAGA chrIII:2921019-2921099 32 5.65e-03 GTCAATAGAT AATAAAAT TTAGATAatt chrI:10389775-10389855 60 6.06e-03 TTCCTTGTGT CATCAGAT GGCAAAAACG chrIII:11359616-11359696 13 6.06e-03 CATATGTCAC CATGAAAT ATTActctct chrX:13170963-13171043 32 6.06e-03 TATTTTGTGG GATTAGAT TATGGGAAAA chrX:12549220-12549300 28 6.06e-03 TTTTTCCGTT AAATGCAT TTCCCAACGC chrII:11027971-11028051 24 6.52e-03 TTCTCGCTTT CATTTCAT TAGGACGTGG chrII:6393810-6393890 57 6.52e-03 GACTCTAGAT TACTCGAT TTGTTACGAC chrX:9805617-9805697 30 6.52e-03 AATTTTGCAT AAACGGAT CAAGCTTAGC chrV:13114099-13114179 1 6.85e-03 . AATCGTGT TAATGTGTCA chrV:13707421-13707501 38 6.85e-03 GCATGCAGAT CATGCCAT TCGAGAGCCA chrV:9772127-9772207 21 6.85e-03 ACAATTCGTT GATTTGAT TTCTATTTCC chrX:2519023-2519103 65 7.16e-03 GTAAGTAGAT TATGGCAT CACTTCTT chrIV:8096558-8096638 22 7.50e-03 AGAGAGAGAG CATTAAGT GGAGAGACAC chrX:8648705-8648785 1 8.01e-03 . AATTTTGT TCTAAGTAGT chrX:5869761-5869841 62 1.06e-02 CTTCTCCTCT CATCTCAT TGTGAGCGAC chrV:3451789-3451869 58 1.09e-02 CATACGGAGG AACGGGGT GGGATTCTAA chrII:4579495-4579575 44 1.14e-02 TTAGCGCGTG CATTGTGT TGTTGTAACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATTSAAT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:989672-989752 9.3e-05 33_[+1]_39 chrV:16749657-16749737 9.3e-05 22_[+1]_50 chrX:8445082-8445162 9.3e-05 25_[+1]_47 chrII:7594416-7594496 9.3e-05 35_[+1]_37 chrX:2045726-2045806 9.3e-05 72_[+1] chrIV:5927947-5928027 9.3e-05 46_[+1]_26 chrIV:10195789-10195869 9.3e-05 19_[+1]_53 chrII:10038714-10038794 9.3e-05 19_[+1]_53 chrX:13021617-13021697 9.3e-05 9_[+1]_63 chrIV:3096279-3096359 9.3e-05 68_[+1]_4 chrX:15125260-15125340 9.3e-05 61_[+1]_11 chrIII:612064-612144 9.3e-05 1_[+1]_71 chrV:12205528-12205608 9.3e-05 13_[+1]_59 chrV:11279253-11279333 9.3e-05 37_[+1]_35 chrIV:4567933-4568013 9.3e-05 30_[+1]_42 chrIV:11717638-11717718 9.3e-05 52_[+1]_20 chrV:13027653-13027733 9.3e-05 41_[+1]_31 chrV:1227901-1227981 9.3e-05 67_[+1]_5 chrIV:13763591-13763671 9.3e-05 62_[+1]_10 chrV:19354653-19354733 9.3e-05 30_[+1]_42 chrII:8152857-8152937 9.3e-05 41_[+1]_31 chrIV:2537892-2537972 9.3e-05 43_[+1]_29 chrX:14662627-14662707 9.3e-05 64_[+1]_8 chrX:11406033-11406113 9.3e-05 33_[+1]_39 chrIII:8877154-8877234 9.3e-05 7_[+1]_65 chrV:11337028-11337108 9.3e-05 42_[+1]_30 chrI:8263001-8263081 9.3e-05 20_[+1]_52 chrI:1653571-1653651 9.3e-05 37_[+1]_35 chrIV:9655715-9655795 9.3e-05 28_[+1]_44 chrIII:8744170-8744250 9.3e-05 24_[+1]_48 chrV:3452612-3452692 9.3e-05 44_[+1]_28 chrIV:14960236-14960316 9.3e-05 4_[+1]_68 chrX:14696079-14696159 9.3e-05 70_[+1]_2 chrX:14638492-14638572 9.3e-05 49_[+1]_23 chrIII:9867495-9867575 9.3e-05 37_[+1]_35 chrI:11655418-11655498 9.3e-05 42_[+1]_30 chrII:6190952-6191032 9.3e-05 34_[+1]_38 chrIV:10188653-10188733 9.3e-05 55_[+1]_17 chrIV:7542748-7542828 9.3e-05 58_[+1]_14 chrX:12479198-12479278 9.3e-05 16_[+1]_56 chrV:20872113-20872193 9.3e-05 70_[+1]_2 chrV:13165396-13165476 9.3e-05 32_[+1]_40 chrIV:11431596-11431676 9.3e-05 21_[+1]_51 chrX:10151082-10151162 9.3e-05 49_[+1]_23 chrI:277180-277260 9.3e-05 35_[+1]_37 chrI:7517528-7517608 0.00015 55_[+1]_17 chrI:790516-790596 0.00015 35_[+1]_37 chrIII:10018160-10018240 0.00015 31_[+1]_41 chrIV:5109118-5109198 0.00015 28_[+1]_44 chrI:14831276-14831356 0.00015 56_[+1]_16 chrV:10816982-10817062 0.00015 17_[+1]_55 chrV:9765104-9765184 0.00015 51_[+1]_21 chrIII:3414562-3414642 0.00015 19_[+1]_53 chrX:9978265-9978345 0.00015 52_[+1]_20 chrV:13812458-13812538 0.00015 26_[+1]_46 chrII:6493303-6493383 0.00015 68_[+1]_4 chrX:14652227-14652307 0.00015 55_[+1]_17 chrIV:5533718-5533798 0.00015 72_[+1] chrV:9763918-9763998 0.00015 41_[+1]_31 chrIII:8289335-8289415 0.00021 22_[+1]_50 chrIII:1131719-1131799 0.00021 60_[+1]_12 chrII:7719153-7719233 0.00021 57_[+1]_15 chrII:4129591-4129671 0.00021 22_[+1]_50 chrV:19177228-19177308 0.00021 2_[+1]_70 chrIII:3970547-3970627 0.00021 36_[+1]_36 chrIII:1733566-1733646 0.00021 61_[+1]_11 chrV:1244459-1244539 0.00021 53_[+1]_19 chrI:453625-453705 0.00021 22_[+1]_50 chrII:14098535-14098615 0.00021 [+1]_72 chrX:11328884-11328964 0.00021 57_[+1]_15 chrI:7418068-7418148 0.00021 25_[+1]_47 chrX:10011837-10011917 0.00021 41_[+1]_31 chrI:4795896-4795976 0.00021 13_[+1]_59 chrX:3901562-3901642 0.00021 14_[+1]_58 chrI:4222496-4222576 0.00021 55_[+1]_17 chrI:11136486-11136566 0.00029 24_[+1]_48 chrII:12067601-12067681 0.00029 7_[+1]_65 chrV:20220768-20220848 0.00029 68_[+1]_4 chrI:8782604-8782684 0.00029 25_[+1]_47 chrX:5131909-5131989 0.00029 21_[+1]_51 chrV:13114698-13114778 0.00029 55_[+1]_17 chrX:5278408-5278488 0.00029 68_[+1]_4 chrI:2697205-2697285 0.00042 59_[+1]_13 chrIII:3136745-3136825 0.00042 12_[+1]_60 chrI:14068131-14068211 0.00042 29_[+1]_43 chrX:11345687-11345767 0.00042 42_[+1]_30 chrI:13041787-13041867 0.00042 33_[+1]_39 chrX:11570121-11570201 0.00042 57_[+1]_15 chrX:13246829-13246909 0.00042 4_[+1]_68 chrX:6970312-6970392 0.00052 7_[+1]_65 chrI:7716697-7716777 0.00052 68_[+1]_4 chrII:6454463-6454543 0.00052 32_[+1]_40 chrV:10721472-10721552 0.00052 55_[+1]_17 chrX:2725924-2726004 0.00052 12_[+1]_60 chrV:13020167-13020247 0.00052 69_[+1]_3 chrX:15548060-15548140 0.00052 18_[+1]_54 chrX:3040161-3040241 0.00052 53_[+1]_19 chrX:9803771-9803851 0.00056 52_[+1]_20 chrV:13681595-13681675 0.00056 23_[+1]_49 chrV:13294674-13294754 0.00056 59_[+1]_13 chrII:6116875-6116955 0.00056 59_[+1]_13 chrV:12748005-12748085 0.00061 34_[+1]_38 chrX:305196-305276 0.00061 46_[+1]_26 chrI:2755500-2755580 0.00071 29_[+1]_43 chrII:11032972-11033052 0.00071 57_[+1]_15 chrV:1252918-1252998 0.00071 65_[+1]_7 chrIV:563565-563645 0.00071 39_[+1]_33 chrX:2519694-2519774 0.00071 16_[+1]_56 chrIII:5402588-5402668 0.00071 38_[+1]_34 chrX:2922964-2923044 0.00071 31_[+1]_41 chrI:9568496-9568576 0.00071 34_[+1]_38 chrV:8254064-8254144 0.00071 37_[+1]_35 chrIV:10572245-10572325 0.0008 70_[+1]_2 chrX:4128846-4128926 0.0008 44_[+1]_28 chrI:11126457-11126537 0.0008 6_[+1]_66 chrI:9570695-9570775 0.0008 10_[+1]_62 chrX:6390122-6390202 0.0008 8_[+1]_64 chrI:10283693-10283773 0.0008 31_[+1]_41 chrII:14470187-14470267 0.0008 42_[+1]_30 chrII:14938504-14938584 0.00097 49_[+1]_23 chrIV:8056935-8057015 0.00097 60_[+1]_12 chrII:11499625-11499705 0.00097 30_[+1]_42 chrX:3584629-3584709 0.00097 37_[+1]_35 chrV:8716359-8716439 0.00097 32_[+1]_40 chrX:17170553-17170633 0.00097 41_[+1]_31 chrX:7679996-7680076 0.00097 9_[+1]_63 chrI:11134952-11135032 0.00097 18_[+1]_54 chrV:12330202-12330282 0.00097 72_[+1] chrIII:10583633-10583713 0.00097 47_[+1]_25 chrIII:3588357-3588437 0.00097 21_[+1]_51 chrV:9977397-9977477 0.00097 47_[+1]_25 chrI:5938851-5938931 0.00097 64_[+1]_8 chrI:4930325-4930405 0.00097 48_[+1]_24 chrX:6705286-6705366 0.00097 37_[+1]_35 chrI:3426016-3426096 0.00097 34_[+1]_38 chrIII:13123608-13123688 0.00097 63_[+1]_9 chrI:2157247-2157327 0.00097 14_[+1]_58 chrIII:4103327-4103407 0.00097 20_[+1]_52 chrV:12818622-12818702 0.00097 28_[+1]_44 chrV:9768962-9769042 0.00097 28_[+1]_44 chrII:4574831-4574911 0.0011 57_[+1]_15 chrII:10084634-10084714 0.0011 20_[+1]_52 chrX:5975403-5975483 0.0011 44_[+1]_28 chrX:4424406-4424486 0.0011 [+1]_72 chrV:9771470-9771550 0.0011 2_[+1]_70 chrV:1223703-1223783 0.0011 61_[+1]_11 chrI:14838039-14838119 0.0011 28_[+1]_44 chrIV:3860581-3860661 0.0012 48_[+1]_24 chrIV:1034312-1034392 0.0012 59_[+1]_13 chrIII:11358431-11358511 0.0012 55_[+1]_17 chrI:782758-782838 0.0012 22_[+1]_50 chrX:14959826-14959906 0.0012 52_[+1]_20 chrIV:11723420-11723500 0.0012 40_[+1]_32 chrX:10619967-10620047 0.0012 48_[+1]_24 chrV:11342071-11342151 0.0012 11_[+1]_61 chrI:9502682-9502762 0.0012 51_[+1]_21 chrI:272681-272761 0.0012 62_[+1]_10 chrIV:6547571-6547651 0.0014 34_[+1]_38 chrV:1313420-1313500 0.0014 39_[+1]_33 chrI:10169455-10169535 0.0014 70_[+1]_2 chrX:3181503-3181583 0.0014 3_[+1]_69 chrX:5983370-5983450 0.0014 45_[+1]_27 chrV:10818618-10818698 0.0014 65_[+1]_7 chrX:3201359-3201439 0.0015 51_[+1]_21 chrI:14608280-14608360 0.0015 41_[+1]_31 chrI:798769-798849 0.0015 [+1]_72 chrX:8770489-8770569 0.0015 19_[+1]_53 chrI:794391-794471 0.0015 13_[+1]_59 chrX:8391645-8391725 0.0015 71_[+1]_1 chrX:5723941-5724021 0.0015 68_[+1]_4 chrII:8301976-8302056 0.0016 24_[+1]_48 chrX:757031-757111 0.0016 37_[+1]_35 chrX:6964030-6964110 0.0016 72_[+1] chrV:9768084-9768164 0.0016 54_[+1]_18 chrIV:17233653-17233733 0.0016 30_[+1]_42 chrX:5564117-5564197 0.0018 14_[+1]_58 chrX:3875890-3875970 0.0018 25_[+1]_47 chrI:4008894-4008974 0.002 15_[+1]_57 chrII:8588595-8588675 0.002 29_[+1]_43 chrI:6806768-6806848 0.002 2_[+1]_70 chrI:816383-816463 0.0023 40_[+1]_32 chrV:10880293-10880373 0.0023 2_[+1]_70 chrV:12210125-12210205 0.0023 46_[+1]_26 chrIII:2904331-2904411 0.0023 11_[+1]_61 chrII:10999251-10999331 0.0023 25_[+1]_47 chrII:7338123-7338203 0.0023 33_[+1]_39 chrIII:4028224-4028304 0.0026 6_[+1]_66 chrII:14644626-14644706 0.0026 65_[+1]_7 chrIV:7272879-7272959 0.0026 34_[+1]_38 chrX:11744752-11744832 0.0026 26_[+1]_46 chrX:8652518-8652598 0.0026 48_[+1]_24 chrX:3619001-3619081 0.0026 51_[+1]_21 chrX:6691819-6691899 0.0026 58_[+1]_14 chrIV:3667966-3668046 0.0029 15_[+1]_57 chrI:14257221-14257301 0.0029 56_[+1]_16 chrI:9475704-9475784 0.0029 24_[+1]_48 chrIII:4132304-4132384 0.0029 32_[+1]_40 chrX:13509097-13509177 0.0029 22_[+1]_50 chrIV:10571194-10571274 0.0029 55_[+1]_17 chrX:15742580-15742660 0.0029 53_[+1]_19 chrII:10696237-10696317 0.0029 29_[+1]_43 chrII:354648-354728 0.0029 12_[+1]_60 chrIV:5811623-5811703 0.0032 55_[+1]_17 chrI:273832-273912 0.0032 47_[+1]_25 chrI:11656597-11656677 0.0032 35_[+1]_37 chrIV:6363741-6363821 0.0035 60_[+1]_12 chrIII:4967398-4967478 0.0036 61_[+1]_11 chrIII:4524214-4524294 0.0036 50_[+1]_22 chrIII:3224251-3224331 0.0036 27_[+1]_45 chrX:13876081-13876161 0.0038 8_[+1]_64 chrV:9605250-9605330 0.0038 41_[+1]_31 chrX:15041495-15041575 0.004 40_[+1]_32 chrV:20645639-20645719 0.004 36_[+1]_36 chrV:14854403-14854483 0.0043 47_[+1]_25 chrI:7332861-7332941 0.0046 43_[+1]_29 chrX:9373848-9373928 0.0046 6_[+1]_66 chrV:7816691-7816771 0.0052 23_[+1]_49 chrII:14432240-14432320 0.0056 21_[+1]_51 chrIII:2921019-2921099 0.0056 31_[+1]_41 chrI:10389775-10389855 0.0061 59_[+1]_13 chrIII:11359616-11359696 0.0061 12_[+1]_60 chrX:13170963-13171043 0.0061 31_[+1]_41 chrX:12549220-12549300 0.0061 27_[+1]_45 chrII:11027971-11028051 0.0065 23_[+1]_49 chrII:6393810-6393890 0.0065 56_[+1]_16 chrX:9805617-9805697 0.0065 29_[+1]_43 chrV:13114099-13114179 0.0068 [+1]_72 chrV:13707421-13707501 0.0068 37_[+1]_35 chrV:9772127-9772207 0.0068 20_[+1]_52 chrX:2519023-2519103 0.0072 64_[+1]_8 chrIV:8096558-8096638 0.0075 21_[+1]_51 chrX:8648705-8648785 0.008 [+1]_72 chrX:5869761-5869841 0.011 61_[+1]_11 chrV:3451789-3451869 0.011 57_[+1]_15 chrII:4579495-4579575 0.011 43_[+1]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATTSAAT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AATTSAAT width=8 seqs=235 chrIII:989672-989752 ( 34) AATTCAAT 1 chrV:16749657-16749737 ( 23) AATTCAAT 1 chrX:8445082-8445162 ( 26) AATTGAAT 1 chrII:7594416-7594496 ( 36) AATTGAAT 1 chrX:2045726-2045806 ( 73) AATTCAAT 1 chrIV:5927947-5928027 ( 47) AATTGAAT 1 chrIV:10195789-10195869 ( 20) AATTGAAT 1 chrII:10038714-10038794 ( 20) AATTGAAT 1 chrX:13021617-13021697 ( 10) AATTCAAT 1 chrIV:3096279-3096359 ( 69) AATTGAAT 1 chrX:15125260-15125340 ( 62) AATTGAAT 1 chrIII:612064-612144 ( 2) AATTGAAT 1 chrV:12205528-12205608 ( 14) AATTCAAT 1 chrV:11279253-11279333 ( 38) AATTCAAT 1 chrIV:4567933-4568013 ( 31) AATTGAAT 1 chrIV:11717638-11717718 ( 53) AATTCAAT 1 chrV:13027653-13027733 ( 42) AATTGAAT 1 chrV:1227901-1227981 ( 68) AATTGAAT 1 chrIV:13763591-13763671 ( 63) AATTGAAT 1 chrV:19354653-19354733 ( 31) AATTGAAT 1 chrII:8152857-8152937 ( 42) AATTCAAT 1 chrIV:2537892-2537972 ( 44) AATTGAAT 1 chrX:14662627-14662707 ( 65) AATTCAAT 1 chrX:11406033-11406113 ( 34) AATTCAAT 1 chrIII:8877154-8877234 ( 8) AATTGAAT 1 chrV:11337028-11337108 ( 43) AATTCAAT 1 chrI:8263001-8263081 ( 21) AATTGAAT 1 chrI:1653571-1653651 ( 38) AATTGAAT 1 chrIV:9655715-9655795 ( 29) AATTCAAT 1 chrIII:8744170-8744250 ( 25) AATTCAAT 1 chrV:3452612-3452692 ( 45) AATTCAAT 1 chrIV:14960236-14960316 ( 5) AATTCAAT 1 chrX:14696079-14696159 ( 71) AATTGAAT 1 chrX:14638492-14638572 ( 50) AATTCAAT 1 chrIII:9867495-9867575 ( 38) AATTCAAT 1 chrI:11655418-11655498 ( 43) AATTGAAT 1 chrII:6190952-6191032 ( 35) AATTGAAT 1 chrIV:10188653-10188733 ( 56) AATTCAAT 1 chrIV:7542748-7542828 ( 59) AATTCAAT 1 chrX:12479198-12479278 ( 17) AATTCAAT 1 chrV:20872113-20872193 ( 71) AATTGAAT 1 chrV:13165396-13165476 ( 33) AATTCAAT 1 chrIV:11431596-11431676 ( 22) AATTCAAT 1 chrX:10151082-10151162 ( 50) AATTGAAT 1 chrI:277180-277260 ( 36) AATTCAAT 1 chrI:7517528-7517608 ( 56) AATTCGAT 1 chrI:790516-790596 ( 36) AATTCGAT 1 chrIII:10018160-10018240 ( 32) AATTCGAT 1 chrIV:5109118-5109198 ( 29) AATTCGAT 1 chrI:14831276-14831356 ( 57) AATTGGAT 1 chrV:10816982-10817062 ( 18) AATTCGAT 1 chrV:9765104-9765184 ( 52) AATTGGAT 1 chrIII:3414562-3414642 ( 20) AATTCGAT 1 chrX:9978265-9978345 ( 53) AATTCGAT 1 chrV:13812458-13812538 ( 27) AATTCGAT 1 chrII:6493303-6493383 ( 69) AATTCGAT 1 chrX:14652227-14652307 ( 56) AATTCGAT 1 chrIV:5533718-5533798 ( 73) AATTGGAT 1 chrV:9763918-9763998 ( 42) AATTCGAT 1 chrIII:8289335-8289415 ( 23) AATCCAAT 1 chrIII:1131719-1131799 ( 61) AATCGAAT 1 chrII:7719153-7719233 ( 58) AATCCAAT 1 chrII:4129591-4129671 ( 23) AATCGAAT 1 chrV:19177228-19177308 ( 3) AATCGAAT 1 chrIII:3970547-3970627 ( 37) AATCGAAT 1 chrIII:1733566-1733646 ( 62) AATCCAAT 1 chrV:1244459-1244539 ( 54) AATCCAAT 1 chrI:453625-453705 ( 23) AATCGAAT 1 chrII:14098535-14098615 ( 1) AATCCAAT 1 chrX:11328884-11328964 ( 58) AATCCAAT 1 chrI:7418068-7418148 ( 26) AATCCAAT 1 chrX:10011837-10011917 ( 42) AATCGAAT 1 chrI:4795896-4795976 ( 14) AATCCAAT 1 chrX:3901562-3901642 ( 15) AATCGAAT 1 chrI:4222496-4222576 ( 56) AATCGAAT 1 chrI:11136486-11136566 ( 25) AATTAAAT 1 chrII:12067601-12067681 ( 8) AATTAAAT 1 chrV:20220768-20220848 ( 69) AATTAAAT 1 chrI:8782604-8782684 ( 26) AATTAAAT 1 chrX:5131909-5131989 ( 22) AATTAAAT 1 chrV:13114698-13114778 ( 56) AATTAAAT 1 chrX:5278408-5278488 ( 69) AATTAAAT 1 chrI:2697205-2697285 ( 60) AATTGCAT 1 chrIII:3136745-3136825 ( 13) AATTCCAT 1 chrI:14068131-14068211 ( 30) AATTTAAT 1 chrX:11345687-11345767 ( 43) AATTTAAT 1 chrI:13041787-13041867 ( 34) AATTTAAT 1 chrX:11570121-11570201 ( 58) AATTTAAT 1 chrX:13246829-13246909 ( 5) AATTTAAT 1 chrX:6970312-6970392 ( 8) AATGCAAT 1 chrI:7716697-7716777 ( 69) AATGCAAT 1 chrII:6454463-6454543 ( 33) AATCCGAT 1 chrV:10721472-10721552 ( 56) AATGGAAT 1 chrX:2725924-2726004 ( 13) AATGCAAT 1 chrV:13020167-13020247 ( 70) AATGCAAT 1 chrX:15548060-15548140 ( 19) AATGCAAT 1 chrX:3040161-3040241 ( 54) AATCGGAT 1 chrX:9803771-9803851 ( 53) AATTAGAT 1 chrV:13681595-13681675 ( 24) AATTAGAT 1 chrV:13294674-13294754 ( 60) AATTAGAT 1 chrII:6116875-6116955 ( 60) AATTAGAT 1 chrV:12748005-12748085 ( 35) AATTTGAT 1 chrX:305196-305276 ( 47) AATTTGAT 1 chrI:2755500-2755580 ( 30) AATGCGAT 1 chrII:11032972-11033052 ( 58) AATGGGAT 1 chrV:1252918-1252998 ( 66) AATGGGAT 1 chrIV:563565-563645 ( 40) AATTGAGT 1 chrX:2519694-2519774 ( 17) AATTCAGT 1 chrIII:5402588-5402668 ( 39) AATTGAGT 1 chrX:2922964-2923044 ( 32) AATTCAGT 1 chrI:9568496-9568576 ( 35) AATGGGAT 1 chrV:8254064-8254144 ( 38) AATGCGAT 1 chrIV:10572245-10572325 ( 71) AATTCTAT 1 chrX:4128846-4128926 ( 45) AATTGTAT 1 chrI:11126457-11126537 ( 7) AATTGTAT 1 chrI:9570695-9570775 ( 11) AATTGTAT 1 chrX:6390122-6390202 ( 9) AATTGTAT 1 chrI:10283693-10283773 ( 32) AATTCTAT 1 chrII:14470187-14470267 ( 43) AATTGTAT 1 chrII:14938504-14938584 ( 50) AATCAAAT 1 chrIV:8056935-8057015 ( 61) CATTCAAT 1 chrII:11499625-11499705 ( 31) AACTGAAT 1 chrX:3584629-3584709 ( 38) AACTCAAT 1 chrV:8716359-8716439 ( 33) AACTCAAT 1 chrX:17170553-17170633 ( 42) AATCAAAT 1 chrX:7679996-7680076 ( 10) AACTCAAT 1 chrI:11134952-11135032 ( 19) CATTCAAT 1 chrV:12330202-12330282 ( 73) AACTCAAT 1 chrIII:10583633-10583713 ( 48) AATCAAAT 1 chrIII:3588357-3588437 ( 22) CATTCAAT 1 chrV:9977397-9977477 ( 48) AACTGAAT 1 chrI:5938851-5938931 ( 65) AACTCAAT 1 chrI:4930325-4930405 ( 49) AATCAAAT 1 chrX:6705286-6705366 ( 38) AATCAAAT 1 chrI:3426016-3426096 ( 35) AACTCAAT 1 chrIII:13123608-13123688 ( 64) CATTGAAT 1 chrI:2157247-2157327 ( 15) AATCAAAT 1 chrIII:4103327-4103407 ( 21) AACTCAAT 1 chrV:12818622-12818702 ( 29) AACTCAAT 1 chrV:9768962-9769042 ( 29) AATCAAAT 1 chrII:4574831-4574911 ( 58) TATTCAAT 1 chrII:10084634-10084714 ( 21) TATTGAAT 1 chrX:5975403-5975483 ( 45) TATTGAAT 1 chrX:4424406-4424486 ( 1) TATTCAAT 1 chrV:9771470-9771550 ( 3) TATTGAAT 1 chrV:1223703-1223783 ( 62) TATTCAAT 1 chrI:14838039-14838119 ( 29) TATTCAAT 1 chrIV:3860581-3860661 ( 49) AATCTAAT 1 chrIV:1034312-1034392 ( 60) AATTCGGT 1 chrIII:11358431-11358511 ( 56) AATTGGGT 1 chrI:782758-782838 ( 23) AATCCCAT 1 chrX:14959826-14959906 ( 53) AATCTAAT 1 chrIV:11723420-11723500 ( 41) AATTGGGT 1 chrX:10619967-10620047 ( 49) AATCTAAT 1 chrV:11342071-11342151 ( 12) AATTACAT 1 chrI:9502682-9502762 ( 52) AATTACAT 1 chrI:272681-272761 ( 63) AATTACAT 1 chrIV:6547571-6547651 ( 35) AATGAAAT 1 chrV:1313420-1313500 ( 40) AATGAAAT 1 chrI:10169455-10169535 ( 71) AATCAGAT 1 chrX:3181503-3181583 ( 4) AATGAAAT 1 chrX:5983370-5983450 ( 46) AACTCGAT 1 chrV:10818618-10818698 ( 66) CATTCGAT 1 chrX:3201359-3201439 ( 52) TATTGGAT 1 chrI:14608280-14608360 ( 42) TATTGGAT 1 chrI:798769-798849 ( 1) AATTTCAT 1 chrX:8770489-8770569 ( 20) AATTTCAT 1 chrI:794391-794471 ( 14) AATTTCAT 1 chrX:8391645-8391725 ( 72) AATTTCAT 1 chrX:5723941-5724021 ( 69) AATTTCAT 1 chrII:8301976-8302056 ( 25) AATGGCAT 1 chrX:757031-757111 ( 38) AATGTAAT 1 chrX:6964030-6964110 ( 73) AATCTGAT 1 chrV:9768084-9768164 ( 55) AATCTGAT 1 chrIV:17233653-17233733 ( 31) AATCGAGT 1 chrX:5564117-5564197 ( 15) AATTAAGT 1 chrX:3875890-3875970 ( 26) AATCGTAT 1 chrI:4008894-4008974 ( 16) GATTCAAT 1 chrII:8588595-8588675 ( 30) GATTGAAT 1 chrI:6806768-6806848 ( 3) AATTATAT 1 chrI:816383-816463 ( 41) AATGTGAT 1 chrV:10880293-10880373 ( 3) AATTCCGT 1 chrV:12210125-12210205 ( 47) AATGTGAT 1 chrIII:2904331-2904411 ( 12) CATTAAAT 1 chrII:10999251-10999331 ( 26) AATTGCGT 1 chrII:7338123-7338203 ( 34) AACTAAAT 1 chrIII:4028224-4028304 ( 7) AATGGAGT 1 chrII:14644626-14644706 ( 66) AATTTTAT 1 chrIV:7272879-7272959 ( 35) AAATGAAT 1 chrX:11744752-11744832 ( 27) AAATGAAT 1 chrX:8652518-8652598 ( 49) AAATGAAT 1 chrX:3619001-3619081 ( 52) AAATCAAT 1 chrX:6691819-6691899 ( 59) AATGCAGT 1 chrIV:3667966-3668046 ( 16) AATAGAAT 1 chrI:14257221-14257301 ( 57) AATAGAAT 1 chrI:9475704-9475784 ( 25) AATTAGGT 1 chrIII:4132304-4132384 ( 33) CATTTAAT 1 chrX:13509097-13509177 ( 23) AATCACAT 1 chrIV:10571194-10571274 ( 56) AATTAGGT 1 chrX:15742580-15742660 ( 54) AACTGCAT 1 chrII:10696237-10696317 ( 30) CATTTAAT 1 chrII:354648-354728 ( 13) AATAGAAT 1 chrIV:5811623-5811703 ( 56) GATTGGAT 1 chrI:273832-273912 ( 48) TATTGCAT 1 chrI:11656597-11656677 ( 36) TATTCCAT 1 chrIV:6363741-6363821 ( 61) AATCTCAT 1 chrIII:4967398-4967478 ( 62) TATTAGAT 1 chrIII:4524214-4524294 ( 51) AAATGGAT 1 chrIII:3224251-3224331 ( 28) TATTAGAT 1 chrX:13876081-13876161 ( 9) AATTGTGT 1 chrV:9605250-9605330 ( 42) AACTTGAT 1 chrX:15041495-15041575 ( 41) TATTTGAT 1 chrV:20645639-20645719 ( 37) TATTTGAT 1 chrV:14854403-14854483 ( 48) AATCATAT 1 chrI:7332861-7332941 ( 44) TATTCTAT 1 chrX:9373848-9373928 ( 7) TATTCTAT 1 chrV:7816691-7816771 ( 24) AACCTAAT 1 chrII:14432240-14432320 ( 22) AATAAAAT 1 chrIII:2921019-2921099 ( 32) AATAAAAT 1 chrI:10389775-10389855 ( 60) CATCAGAT 1 chrIII:11359616-11359696 ( 13) CATGAAAT 1 chrX:13170963-13171043 ( 32) GATTAGAT 1 chrX:12549220-12549300 ( 28) AAATGCAT 1 chrII:11027971-11028051 ( 24) CATTTCAT 1 chrII:6393810-6393890 ( 57) TACTCGAT 1 chrX:9805617-9805697 ( 30) AAACGGAT 1 chrV:13114099-13114179 ( 1) AATCGTGT 1 chrV:13707421-13707501 ( 38) CATGCCAT 1 chrV:9772127-9772207 ( 21) GATTTGAT 1 chrX:2519023-2519103 ( 65) TATGGCAT 1 chrIV:8096558-8096638 ( 22) CATTAAGT 1 chrX:8648705-8648785 ( 1) AATTTTGT 1 chrX:5869761-5869841 ( 62) CATCTCAT 1 chrV:3451789-3451869 ( 58) AACGGGGT 1 chrII:4579495-4579575 ( 44) CATTGTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATTSAAT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 6.92071 E= 1.1e-087 144 -166 -318 -188 170 -1452 -1452 -1452 -337 -148 -1452 160 -385 -17 -92 123 -82 81 80 -113 95 -98 25 -204 156 -1452 -111 -1452 -1452 -1452 -1452 175 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATTSAAT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 235 E= 1.1e-087 0.834043 0.063830 0.021277 0.080851 1.000000 0.000000 0.000000 0.000000 0.029787 0.072340 0.000000 0.897872 0.021277 0.178723 0.102128 0.697872 0.174468 0.353191 0.336170 0.136170 0.595745 0.102128 0.229787 0.072340 0.910638 0.000000 0.089362 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AATTSAAT MEME-1 regular expression -------------------------------------------------------------------------------- AATT[CG][AG]AT -------------------------------------------------------------------------------- Time 4.99 secs. ******************************************************************************** ******************************************************************************** MOTIF AGARRGAG MEME-2 width = 8 sites = 54 llr = 436 E-value = 1.3e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGARRGAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 8:86429: pos.-specific C :::::::: probability G 2a24681a matrix T :::::::: bits 2.4 * * 2.1 * * 1.9 * * 1.7 * * Relative 1.4 * * * Entropy 1.2 ** **** (11.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGAAGGAG consensus G GAA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARRGAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:1313420-1313500 20 8.03e-06 GGAGCACATG AGAGGGAG TAGAAGGAGT chrV:1227901-1227981 54 8.03e-06 GCGCCTCCAG AGAGGGAG GGGGCAAATT chrX:3901562-3901642 48 8.03e-06 TTGAAAATTg agagggag agagagagag chrIV:5927947-5928027 60 2.08e-05 TGAATTTGGA AGAAGGAG CCGGCAGTTT chrIII:8276930-8277010 47 2.08e-05 TTAGCGAGAA AGAAGGAG GACCAATTAG chrV:13114099-13114179 48 2.08e-05 GAGATGGTGG AGAAGGAG AAGTGTGTTA chrIII:4132304-4132384 12 2.08e-05 aagaagaata agaaggag aagaaggaga chrIII:13123608-13123688 29 2.08e-05 TAGGGAaaga agaaggag aagatgacga chrV:3452612-3452692 25 2.08e-05 CCGAAGGAGA AGAAGGAG AAAATCAAGT chrII:8301976-8302056 60 3.35e-05 AACGGAGTCA AGAGAGAG CACGACACTA chrIII:4524214-4524294 40 3.35e-05 GTCCATAGAA AGAGAGAG CGTAAATGGA chrIV:8096558-8096638 14 3.35e-05 TAAGGGAAAG AGAGAGAG CATTAAGTGG chrIII:3970547-3970627 12 3.35e-05 AGGCAAAATC AGAGAGAG GAAGTCGCCG chrIII:10583633-10583713 11 3.35e-05 AAGAAAAGTT AGAGAGAG GAAGGCGGGG chrI:794391-794471 72 3.35e-05 CAAATATAGA AGAGAGAG G chrI:14257221-14257301 28 3.35e-05 CTGTGCTCAG AGAGAGAG AGCATTTTGC chrI:11656597-11656677 16 3.35e-05 AAAGCAAGAA AGAGAGAG AGATTATCAA chrI:7418068-7418148 66 3.35e-05 GCAACAAGAA AGAGAGAG GGAAGGA chrI:9568496-9568576 62 3.35e-05 GGTATAGAAA AGAGAGAG CTCATGGAAA chrIV:5533718-5533798 51 3.86e-05 TATAATACAC GGAGGGAG CTAGAAATTG chrI:7716697-7716777 40 5.88e-05 AAAGTAAGAG AGAAAGAG TGAGAGATTC chrV:12748005-12748085 15 5.88e-05 AGAGACACAG AGAAAGAG AGCTGAATAG chrX:3181503-3181583 19 5.88e-05 AATAaagaag agaaagag gaaagaagaa chrV:9977397-9977477 28 6.68e-05 GGCCTGAAAG GGAAGGAG AAATTGCGAA chrI:11655418-11655498 61 6.68e-05 TTCGTAGAAT GGAAGGAG CAGAGAGACT chrX:3619001-3619081 37 7.19e-05 GTGTGGTTGG AGGGGGAG AGGGGCTAAA chrI:10169455-10169535 1 8.50e-05 . GGAGAGAG ACGTCTTCAA chrIII:3136745-3136825 30 8.50e-05 TTAAATTCTT GGAGAGAG TACATCCATT chrIV:1034312-1034392 50 9.30e-05 AATGAAGAAA AGGAGGAG GAAATTCGGT chrIV:3860581-3860661 39 1.27e-04 TATTAATTGA AGAAGGGG GTAATCTAAT chrIV:11717638-11717718 4 1.27e-04 TTC GGAAAGAG AAGACTTGGT chrII:354648-354728 49 1.27e-04 AAATTGGCGT AGAAGGGG GGATAAGTGC chrI:4008894-4008974 69 1.47e-04 GCTCGAaaga agaagaag aaat chrII:11499625-11499705 73 1.47e-04 AAGAGCGGGA AGAAGAAG chrV:7816691-7816771 39 1.47e-04 AATGTCGCGA AGAAGAAG CTCTTTGTTA chrV:9157710-9157790 5 1.47e-04 TCAA AGAAGAAG AATATGTGCT chrI:14831276-14831356 41 1.47e-04 AATGGATAGA AGAAGAAG ATGAGGCTAA chrX:3040161-3040241 37 1.47e-04 AACTTATAAA AGAAGAAG ATGCAAGTAA chrV:13027653-13027733 19 1.55e-04 GAGAGTGAAA AGGGAGAG AAGGAACACT chrIII:1733566-1733646 18 1.66e-04 GCAAGGATTA GGGGGGAG AAGAACTATA chrX:14959826-14959906 31 1.66e-04 GAAAAGAAAC GGGGGGAG GTGAAATGAA chrV:10818618-10818698 46 1.82e-04 TGATGAAAGA AGGAAGAG ACTCACTAAC chrX:2519023-2519103 40 2.20e-04 GGCACCAATT AGAAAGGG TGACGATGTA chrII:11027971-11028051 53 2.33e-04 GGGAATTGGT GGAAGGGG GAAACACACA chrX:13170963-13171043 66 2.33e-04 AGAAGGCTTG GGAAGGGG GTTCCAA chrIV:6363741-6363821 15 2.65e-04 CCGATGATAG AGAAAAAG ATGAGAAGAT chrV:13020167-13020247 36 2.65e-04 CTTTCTAGTG AGAAAAAG CGGACGGCTG chrI:7885984-7886064 60 3.12e-04 AGAGAGAAGA GGGAAGAG AAGTACTTAT chrV:9768962-9769042 55 3.12e-04 TGAATTTATG AGGGGAAG ACACACACAC chrIV:1212500-1212580 72 3.41e-04 TCGGCAAAAA GGAAAGGG G chrV:20645639-20645719 49 3.41e-04 TTTGATTTGC AGAGGAGG ACTATTAGCA chrII:10999251-10999331 68 3.41e-04 ACACTGACTA GGAGAAAG ACAAA chrX:14694818-14694898 63 3.54e-04 GTTAATAAAG AGGAGAAG AGCTGTGATG chrX:9373848-9373928 70 3.87e-04 GTCCGTTAAA AGAAGAGG GCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARRGAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:1313420-1313500 8e-06 19_[+2]_53 chrV:1227901-1227981 8e-06 53_[+2]_19 chrX:3901562-3901642 8e-06 47_[+2]_25 chrIV:5927947-5928027 2.1e-05 59_[+2]_13 chrIII:8276930-8277010 2.1e-05 46_[+2]_26 chrV:13114099-13114179 2.1e-05 47_[+2]_25 chrIII:4132304-4132384 2.1e-05 11_[+2]_61 chrIII:13123608-13123688 2.1e-05 28_[+2]_44 chrV:3452612-3452692 2.1e-05 24_[+2]_48 chrII:8301976-8302056 3.4e-05 59_[+2]_13 chrIII:4524214-4524294 3.4e-05 39_[+2]_33 chrIV:8096558-8096638 3.4e-05 13_[+2]_59 chrIII:3970547-3970627 3.4e-05 11_[+2]_61 chrIII:10583633-10583713 3.4e-05 10_[+2]_62 chrI:794391-794471 3.4e-05 71_[+2]_1 chrI:14257221-14257301 3.4e-05 27_[+2]_45 chrI:11656597-11656677 3.4e-05 15_[+2]_57 chrI:7418068-7418148 3.4e-05 65_[+2]_7 chrI:9568496-9568576 3.4e-05 61_[+2]_11 chrIV:5533718-5533798 3.9e-05 50_[+2]_22 chrI:7716697-7716777 5.9e-05 39_[+2]_33 chrV:12748005-12748085 5.9e-05 14_[+2]_58 chrX:3181503-3181583 5.9e-05 18_[+2]_54 chrV:9977397-9977477 6.7e-05 27_[+2]_45 chrI:11655418-11655498 6.7e-05 60_[+2]_12 chrX:3619001-3619081 7.2e-05 36_[+2]_36 chrI:10169455-10169535 8.5e-05 [+2]_72 chrIII:3136745-3136825 8.5e-05 29_[+2]_43 chrIV:1034312-1034392 9.3e-05 49_[+2]_23 chrIV:3860581-3860661 0.00013 38_[+2]_34 chrIV:11717638-11717718 0.00013 3_[+2]_69 chrII:354648-354728 0.00013 48_[+2]_24 chrI:4008894-4008974 0.00015 68_[+2]_4 chrII:11499625-11499705 0.00015 72_[+2] chrV:7816691-7816771 0.00015 38_[+2]_34 chrV:9157710-9157790 0.00015 4_[+2]_68 chrI:14831276-14831356 0.00015 40_[+2]_32 chrX:3040161-3040241 0.00015 36_[+2]_36 chrV:13027653-13027733 0.00015 18_[+2]_54 chrIII:1733566-1733646 0.00017 17_[+2]_55 chrX:14959826-14959906 0.00017 30_[+2]_42 chrV:10818618-10818698 0.00018 45_[+2]_27 chrX:2519023-2519103 0.00022 39_[+2]_33 chrII:11027971-11028051 0.00023 52_[+2]_20 chrX:13170963-13171043 0.00023 65_[+2]_7 chrIV:6363741-6363821 0.00027 14_[+2]_58 chrV:13020167-13020247 0.00027 35_[+2]_37 chrI:7885984-7886064 0.00031 59_[+2]_13 chrV:9768962-9769042 0.00031 54_[+2]_18 chrIV:1212500-1212580 0.00034 71_[+2]_1 chrV:20645639-20645719 0.00034 48_[+2]_24 chrII:10999251-10999331 0.00034 67_[+2]_5 chrX:14694818-14694898 0.00035 62_[+2]_10 chrX:9373848-9373928 0.00039 69_[+2]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARRGAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGARRGAG width=8 seqs=54 chrV:1313420-1313500 ( 20) AGAGGGAG 1 chrV:1227901-1227981 ( 54) AGAGGGAG 1 chrX:3901562-3901642 ( 48) AGAGGGAG 1 chrIV:5927947-5928027 ( 60) AGAAGGAG 1 chrIII:8276930-8277010 ( 47) AGAAGGAG 1 chrV:13114099-13114179 ( 48) AGAAGGAG 1 chrIII:4132304-4132384 ( 12) AGAAGGAG 1 chrIII:13123608-13123688 ( 29) AGAAGGAG 1 chrV:3452612-3452692 ( 25) AGAAGGAG 1 chrII:8301976-8302056 ( 60) AGAGAGAG 1 chrIII:4524214-4524294 ( 40) AGAGAGAG 1 chrIV:8096558-8096638 ( 14) AGAGAGAG 1 chrIII:3970547-3970627 ( 12) AGAGAGAG 1 chrIII:10583633-10583713 ( 11) AGAGAGAG 1 chrI:794391-794471 ( 72) AGAGAGAG 1 chrI:14257221-14257301 ( 28) AGAGAGAG 1 chrI:11656597-11656677 ( 16) AGAGAGAG 1 chrI:7418068-7418148 ( 66) AGAGAGAG 1 chrI:9568496-9568576 ( 62) AGAGAGAG 1 chrIV:5533718-5533798 ( 51) GGAGGGAG 1 chrI:7716697-7716777 ( 40) AGAAAGAG 1 chrV:12748005-12748085 ( 15) AGAAAGAG 1 chrX:3181503-3181583 ( 19) AGAAAGAG 1 chrV:9977397-9977477 ( 28) GGAAGGAG 1 chrI:11655418-11655498 ( 61) GGAAGGAG 1 chrX:3619001-3619081 ( 37) AGGGGGAG 1 chrI:10169455-10169535 ( 1) GGAGAGAG 1 chrIII:3136745-3136825 ( 30) GGAGAGAG 1 chrIV:1034312-1034392 ( 50) AGGAGGAG 1 chrIV:3860581-3860661 ( 39) AGAAGGGG 1 chrIV:11717638-11717718 ( 4) GGAAAGAG 1 chrII:354648-354728 ( 49) AGAAGGGG 1 chrI:4008894-4008974 ( 69) AGAAGAAG 1 chrII:11499625-11499705 ( 73) AGAAGAAG 1 chrV:7816691-7816771 ( 39) AGAAGAAG 1 chrV:9157710-9157790 ( 5) AGAAGAAG 1 chrI:14831276-14831356 ( 41) AGAAGAAG 1 chrX:3040161-3040241 ( 37) AGAAGAAG 1 chrV:13027653-13027733 ( 19) AGGGAGAG 1 chrIII:1733566-1733646 ( 18) GGGGGGAG 1 chrX:14959826-14959906 ( 31) GGGGGGAG 1 chrV:10818618-10818698 ( 46) AGGAAGAG 1 chrX:2519023-2519103 ( 40) AGAAAGGG 1 chrII:11027971-11028051 ( 53) GGAAGGGG 1 chrX:13170963-13171043 ( 66) GGAAGGGG 1 chrIV:6363741-6363821 ( 15) AGAAAAAG 1 chrV:13020167-13020247 ( 36) AGAAAAAG 1 chrI:7885984-7886064 ( 60) GGGAAGAG 1 chrV:9768962-9769042 ( 55) AGGGGAAG 1 chrIV:1212500-1212580 ( 72) GGAAAGGG 1 chrV:20645639-20645719 ( 49) AGAGGAGG 1 chrII:10999251-10999331 ( 68) GGAGAAAG 1 chrX:14694818-14694898 ( 63) AGGAGAAG 1 chrX:9373848-9373928 ( 70) AGAAGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARRGAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.5224 E= 1.3e-014 130 -1240 32 -1240 -1240 -1240 237 -1240 144 -1240 -22 -1240 90 -1240 114 -1240 53 -1240 152 -1240 -35 -1240 197 -1240 147 -1240 -39 -1240 -1240 -1240 237 -1240 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARRGAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 1.3e-014 0.759259 0.000000 0.240741 0.000000 0.000000 0.000000 1.000000 0.000000 0.833333 0.000000 0.166667 0.000000 0.574074 0.000000 0.425926 0.000000 0.444444 0.000000 0.555556 0.000000 0.240741 0.000000 0.759259 0.000000 0.851852 0.000000 0.148148 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGARRGAG MEME-2 regular expression -------------------------------------------------------------------------------- [AG]GA[AG][GA][GA]AG -------------------------------------------------------------------------------- Time 8.44 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTYCYTC MEME-3 width = 8 sites = 66 llr = 492 E-value = 3.8e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTYCYTC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 1935742a probability G :::::::: matrix T 9175368: bits 2.4 * 2.1 * 1.9 * * 1.7 * * Relative 1.4 ** * Entropy 1.2 ** * ** (10.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCTCCTTC consensus CTTCC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYCYTC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:10389775-10389855 15 2.13e-05 AGAAATCCCC TCTCCCTC TCGATTTTTG chrV:1252918-1252998 14 2.13e-05 GAACACCAGC TCTCCTTC TTTTAGGTGA chrIV:5109118-5109198 41 2.13e-05 TTCGATTAAC TCTCCCTC CTACTTCCAA chrV:11337028-11337108 12 2.13e-05 AGAATGAGCC TCTCCTTC TCATTGCTCG chrIII:4967398-4967478 46 5.28e-05 TTTTGCTCAC TCTTCTTC TATAAGATTA chrV:7171468-7171548 67 5.28e-05 CCATTTTCCG TCTTCCTC TTCTTC chrIII:3970547-3970627 61 5.28e-05 TCCTCGCACG TCTTCTTC TCTTCTCTAC chrV:8716359-8716439 71 5.28e-05 TATTTTTGTG TCTTCCTC GT chrII:4574831-4574911 11 5.28e-05 GCATTTCTTC TCTTCCTC CCATACACTT chrIII:8284973-8285053 2 5.28e-05 C TCTTCCTC TCATACTAAT chrIII:3588357-3588437 68 5.28e-05 ttctcctttt tcttcttc ttttg chrIII:8744170-8744250 1 5.28e-05 . tcttcttc tgcttcttct chrIV:11723420-11723500 4 5.28e-05 tct tcttcttc ttcgacgtct chrX:10619967-10620047 20 5.28e-05 CATTCTGACT TCTTCTTC CATTAGTACC chrII:10696237-10696317 46 5.28e-05 ATTAAGAAAG TCTTCTTC GAAAAGCTTC chrI:2697205-2697285 15 6.72e-05 AAGACATATA TCCCCCTC CCTATTTGTG chrV:13681595-13681675 55 6.72e-05 CTGATCATGC TCCCCCTC GACCACTCCG chrI:273832-273912 14 6.72e-05 GTTCCCCAAT TCCCCTTC ATCTTATTAC chrI:4930325-4930405 68 6.72e-05 TCGGTCCCCT TCCCCCTC AATCC chrX:13246829-13246909 36 6.72e-05 TCGCACCCTC TCCCCTTC CCATAATTTG chrII:14938504-14938584 14 1.03e-04 GATGCTTTCT TCTCCTCC ATTCTCCACT chrX:757031-757111 72 1.03e-04 TTTGGTGACT TCTCCTCC G chrV:10880293-10880373 45 1.03e-04 CATTCTCTCA TCCTCTTC TACAACACAA chrIV:563565-563645 55 1.03e-04 AGTTGGGTTT TCCTCTTC TCGTCGTGTA chrIV:962022-962102 43 1.03e-04 TACCATAATC TCTCCTCC TCCACACATG chrX:13876081-13876161 30 1.03e-04 TATCGGTTGG TCCTCCTC CTTCCCTATC chrII:14098535-14098615 40 1.03e-04 CTACTACTTT TCTCCCCC ACCACAATAT chrIV:6363741-6363821 42 1.03e-04 TACCCTCCCG TCCTCCTC CTAAATGCGT chrI:9502682-9502762 41 1.03e-04 TTTTACTCAG TCTCCTCC AAAAATTACA chrIII:10018160-10018240 48 1.56e-04 ATTAAGTCTC TCTCTCTC TTGGTGGCTC chrIII:11359616-11359696 40 1.56e-04 tctctctctc tctctctc tctttctctT chrI:7332861-7332941 13 1.56e-04 AGCAGGCGTT TCTCTTTC TTGTTACCCC chrX:4128846-4128926 17 1.56e-04 TTCTTCTTAT TCTTCCCC ATTTCTTACG chrIII:11358431-11358511 6 1.56e-04 TCATT TCTCTCTC CAAAATGGAT chrI:801458-801538 61 1.56e-04 CGGGGCCCCC TCTTCTCC TACTTCTTAT chrV:14854403-14854483 11 1.56e-04 GTGAGTGTAT TCTCTCTC TATCTCATTT chrX:5869761-5869841 51 1.56e-04 GGGGTCCACT TCTTCTCC TCTCATCTCA chrIII:6838179-6838259 70 1.56e-04 ACGCCCTTTC TCTCTCTC CCT chrX:15548060-15548140 44 1.56e-04 AGTGCCATGC TCTTCCCC TTTCTTTTTT chrIII:4103327-4103407 66 1.56e-04 ATCCCTCATT TCTTCTCC GTTTCTC chrI:277180-277260 20 1.56e-04 TCTCTCACTC TCTCTCTC GGCTTCTAAA chrV:11342071-11342151 66 2.26e-04 TGGTCCTTCT TCTTTTTC TTTTTTC chrIII:6073065-6073145 21 2.26e-04 ATTTCTTTCC TCTTTCTC TCTTTTCTGT chrI:5938851-5938931 43 2.26e-04 TCGTTCTCCA TCTTTCTC AATATATCTA chrI:10283693-10283773 72 2.26e-04 CTCTCACTTT CCTCCTTC C chrX:9805617-9805697 2 2.62e-04 G TCCCTTTC GCAGTCTCAA chrIII:989672-989752 55 3.66e-04 TTTCGCGTTT CCCCCCTC CCATCCTCCT chrX:8445082-8445162 48 3.66e-04 ACACATTTGC TCCTTTTC TCACACTTGT chrX:5564117-5564197 45 3.66e-04 TCGATTACTT TCCTTTTC CACAACACAA chrV:11279253-11279333 18 3.66e-04 CAAACTAATG TCTGCTTC GGGTCTAATT chrI:9570695-9570775 56 3.66e-04 ATAAACTGGA CCCCCTTC CGAAATAGTA chrX:14638492-14638572 4 3.66e-04 GCC TCTGCTTC AATTACCAAT chrV:20872113-20872193 55 3.66e-04 AGAGAGTATT TCCTTTTC ACTAAAATAA chrIV:3096279-3096359 9 4.53e-04 TCTTAGTC CCTCCTCC CATCTTCTTG chrX:11345687-11345767 29 4.53e-04 GCAAATGCGT TCTTTTCC GCCAACAATT chrIII:2921019-2921099 64 4.53e-04 tagttggaaa tttccttc tatctctaa chrI:782758-782838 52 4.53e-04 AATCAGTTTC TTTCCTTC CGCCCTACTT chrV:13294674-13294754 3 4.53e-04 TG TCTTTTCC TGCCGACAAC chrV:9772127-9772207 34 4.53e-04 TTGATTTCTA TTTCCCTC GGAAAAAATT chrIV:3667966-3668046 6 4.82e-04 CTTCA TCCGCTTC ACAATAGAAT chrV:13027653-13027733 60 5.64e-04 GTTGGCAAGA CCTCTTTC GCCTCAATAA chrIII:3414562-3414642 58 5.64e-04 GTCTGTCTTC CCTCTTTC TATTTCAAAG chrX:3875890-3875970 34 6.27e-04 TAAATCGTAT TTCCCCTC GCAAGGATGC chrI:8263001-8263081 71 6.59e-04 TTGAAGATTC CCTTTTTC CG chrIII:612064-612144 38 7.66e-04 GAAGACCCGC TTTCCCCC GCGCGAAAAG chrI:3426016-3426096 21 7.66e-04 TTGGAGCCCA TTCTCCTC GACGCAAACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYCYTC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:10389775-10389855 2.1e-05 14_[+3]_58 chrV:1252918-1252998 2.1e-05 13_[+3]_59 chrIV:5109118-5109198 2.1e-05 40_[+3]_32 chrV:11337028-11337108 2.1e-05 11_[+3]_61 chrIII:4967398-4967478 5.3e-05 45_[+3]_27 chrV:7171468-7171548 5.3e-05 66_[+3]_6 chrIII:3970547-3970627 5.3e-05 60_[+3]_12 chrV:8716359-8716439 5.3e-05 70_[+3]_2 chrII:4574831-4574911 5.3e-05 10_[+3]_62 chrIII:8284973-8285053 5.3e-05 1_[+3]_71 chrIII:3588357-3588437 5.3e-05 67_[+3]_5 chrIII:8744170-8744250 5.3e-05 [+3]_72 chrIV:11723420-11723500 5.3e-05 3_[+3]_69 chrX:10619967-10620047 5.3e-05 19_[+3]_53 chrII:10696237-10696317 5.3e-05 45_[+3]_27 chrI:2697205-2697285 6.7e-05 14_[+3]_58 chrV:13681595-13681675 6.7e-05 54_[+3]_18 chrI:273832-273912 6.7e-05 13_[+3]_59 chrI:4930325-4930405 6.7e-05 67_[+3]_5 chrX:13246829-13246909 6.7e-05 35_[+3]_37 chrII:14938504-14938584 0.0001 13_[+3]_59 chrX:757031-757111 0.0001 71_[+3]_1 chrV:10880293-10880373 0.0001 44_[+3]_28 chrIV:563565-563645 0.0001 54_[+3]_18 chrIV:962022-962102 0.0001 42_[+3]_30 chrX:13876081-13876161 0.0001 29_[+3]_43 chrII:14098535-14098615 0.0001 39_[+3]_33 chrIV:6363741-6363821 0.0001 41_[+3]_31 chrI:9502682-9502762 0.0001 40_[+3]_32 chrIII:10018160-10018240 0.00016 47_[+3]_25 chrIII:11359616-11359696 0.00016 39_[+3]_33 chrI:7332861-7332941 0.00016 12_[+3]_60 chrX:4128846-4128926 0.00016 16_[+3]_56 chrIII:11358431-11358511 0.00016 5_[+3]_67 chrI:801458-801538 0.00016 60_[+3]_12 chrV:14854403-14854483 0.00016 10_[+3]_62 chrX:5869761-5869841 0.00016 50_[+3]_22 chrIII:6838179-6838259 0.00016 69_[+3]_3 chrX:15548060-15548140 0.00016 43_[+3]_29 chrIII:4103327-4103407 0.00016 65_[+3]_7 chrI:277180-277260 0.00016 19_[+3]_53 chrV:11342071-11342151 0.00023 65_[+3]_7 chrIII:6073065-6073145 0.00023 20_[+3]_52 chrI:5938851-5938931 0.00023 42_[+3]_30 chrI:10283693-10283773 0.00023 71_[+3]_1 chrX:9805617-9805697 0.00026 1_[+3]_71 chrIII:989672-989752 0.00037 54_[+3]_18 chrX:8445082-8445162 0.00037 47_[+3]_25 chrX:5564117-5564197 0.00037 44_[+3]_28 chrV:11279253-11279333 0.00037 17_[+3]_55 chrI:9570695-9570775 0.00037 55_[+3]_17 chrX:14638492-14638572 0.00037 3_[+3]_69 chrV:20872113-20872193 0.00037 54_[+3]_18 chrIV:3096279-3096359 0.00045 8_[+3]_64 chrX:11345687-11345767 0.00045 28_[+3]_44 chrIII:2921019-2921099 0.00045 63_[+3]_9 chrI:782758-782838 0.00045 51_[+3]_21 chrV:13294674-13294754 0.00045 2_[+3]_70 chrV:9772127-9772207 0.00045 33_[+3]_39 chrIV:3667966-3668046 0.00048 5_[+3]_67 chrV:13027653-13027733 0.00056 59_[+3]_13 chrIII:3414562-3414642 0.00056 57_[+3]_15 chrX:3875890-3875970 0.00063 33_[+3]_39 chrI:8263001-8263081 0.00066 70_[+3]_2 chrIII:612064-612144 0.00077 37_[+3]_35 chrI:3426016-3426096 0.00077 20_[+3]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYCYTC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTYCYTC width=8 seqs=66 chrI:10389775-10389855 ( 15) TCTCCCTC 1 chrV:1252918-1252998 ( 14) TCTCCTTC 1 chrIV:5109118-5109198 ( 41) TCTCCCTC 1 chrV:11337028-11337108 ( 12) TCTCCTTC 1 chrIII:4967398-4967478 ( 46) TCTTCTTC 1 chrV:7171468-7171548 ( 67) TCTTCCTC 1 chrIII:3970547-3970627 ( 61) TCTTCTTC 1 chrV:8716359-8716439 ( 71) TCTTCCTC 1 chrII:4574831-4574911 ( 11) TCTTCCTC 1 chrIII:8284973-8285053 ( 2) TCTTCCTC 1 chrIII:3588357-3588437 ( 68) TCTTCTTC 1 chrIII:8744170-8744250 ( 1) TCTTCTTC 1 chrIV:11723420-11723500 ( 4) TCTTCTTC 1 chrX:10619967-10620047 ( 20) TCTTCTTC 1 chrII:10696237-10696317 ( 46) TCTTCTTC 1 chrI:2697205-2697285 ( 15) TCCCCCTC 1 chrV:13681595-13681675 ( 55) TCCCCCTC 1 chrI:273832-273912 ( 14) TCCCCTTC 1 chrI:4930325-4930405 ( 68) TCCCCCTC 1 chrX:13246829-13246909 ( 36) TCCCCTTC 1 chrII:14938504-14938584 ( 14) TCTCCTCC 1 chrX:757031-757111 ( 72) TCTCCTCC 1 chrV:10880293-10880373 ( 45) TCCTCTTC 1 chrIV:563565-563645 ( 55) TCCTCTTC 1 chrIV:962022-962102 ( 43) TCTCCTCC 1 chrX:13876081-13876161 ( 30) TCCTCCTC 1 chrII:14098535-14098615 ( 40) TCTCCCCC 1 chrIV:6363741-6363821 ( 42) TCCTCCTC 1 chrI:9502682-9502762 ( 41) TCTCCTCC 1 chrIII:10018160-10018240 ( 48) TCTCTCTC 1 chrIII:11359616-11359696 ( 40) TCTCTCTC 1 chrI:7332861-7332941 ( 13) TCTCTTTC 1 chrX:4128846-4128926 ( 17) TCTTCCCC 1 chrIII:11358431-11358511 ( 6) TCTCTCTC 1 chrI:801458-801538 ( 61) TCTTCTCC 1 chrV:14854403-14854483 ( 11) TCTCTCTC 1 chrX:5869761-5869841 ( 51) TCTTCTCC 1 chrIII:6838179-6838259 ( 70) TCTCTCTC 1 chrX:15548060-15548140 ( 44) TCTTCCCC 1 chrIII:4103327-4103407 ( 66) TCTTCTCC 1 chrI:277180-277260 ( 20) TCTCTCTC 1 chrV:11342071-11342151 ( 66) TCTTTTTC 1 chrIII:6073065-6073145 ( 21) TCTTTCTC 1 chrI:5938851-5938931 ( 43) TCTTTCTC 1 chrI:10283693-10283773 ( 72) CCTCCTTC 1 chrX:9805617-9805697 ( 2) TCCCTTTC 1 chrIII:989672-989752 ( 55) CCCCCCTC 1 chrX:8445082-8445162 ( 48) TCCTTTTC 1 chrX:5564117-5564197 ( 45) TCCTTTTC 1 chrV:11279253-11279333 ( 18) TCTGCTTC 1 chrI:9570695-9570775 ( 56) CCCCCTTC 1 chrX:14638492-14638572 ( 4) TCTGCTTC 1 chrV:20872113-20872193 ( 55) TCCTTTTC 1 chrIV:3096279-3096359 ( 9) CCTCCTCC 1 chrX:11345687-11345767 ( 29) TCTTTTCC 1 chrIII:2921019-2921099 ( 64) TTTCCTTC 1 chrI:782758-782838 ( 52) TTTCCTTC 1 chrV:13294674-13294754 ( 3) TCTTTTCC 1 chrV:9772127-9772207 ( 34) TTTCCCTC 1 chrIV:3667966-3668046 ( 6) TCCGCTTC 1 chrV:13027653-13027733 ( 60) CCTCTTTC 1 chrIII:3414562-3414642 ( 58) CCTCTTTC 1 chrX:3875890-3875970 ( 34) TTCCCCTC 1 chrI:8263001-8263081 ( 71) CCTTTTTC 1 chrIII:612064-612144 ( 38) TTTCCCCC 1 chrI:3426016-3426096 ( 21) TTCTCCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYCYTC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.86128 E= 3.8e-010 -1269 -93 -1269 159 -1269 217 -1269 -171 -1269 44 -1269 129 -1269 131 -209 61 -1269 182 -1269 -5 -1269 102 -1269 99 -1269 7 -1269 141 -1269 231 -1269 -1269 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYCYTC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 66 E= 3.8e-010 0.000000 0.106061 0.000000 0.893939 0.000000 0.909091 0.000000 0.090909 0.000000 0.272727 0.000000 0.727273 0.000000 0.500000 0.045455 0.454545 0.000000 0.712121 0.000000 0.287879 0.000000 0.409091 0.000000 0.590909 0.000000 0.212121 0.000000 0.787879 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYCYTC MEME-3 regular expression -------------------------------------------------------------------------------- TC[TC][CT][CT][TC][TC]C -------------------------------------------------------------------------------- Time 12.16 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGKGGGA MEME-4 width = 8 sites = 5 llr = 57 E-value = 5.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGKGGGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C :::::::: probability G :aa6aaa: matrix T a::4:::: bits 2.4 ** *** 2.1 ** *** 1.9 ** *** 1.7 *** **** Relative 1.4 *** **** Entropy 1.2 ******** (16.4 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGGGGGGA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGKGGGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:1131719-1131799 33 4.88e-06 CAGGAACTAT TGGGGGGA CCCGCGCGCG chrII:11027971-11028051 39 4.88e-06 CATTAGGACG TGGGGGGA ATTGGTGGAA chrIV:7542748-7542828 12 4.88e-06 ACGGATAAGA TGGGGGGA TCCCGTACAC chrIV:1034312-1034392 17 1.23e-05 ATGGAGCATC TGGTGGGA CGGAAATTGG chrIV:5533718-5533798 14 1.23e-05 CCTCGAGTGG TGGTGGGA ACGCGGCGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGKGGGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:1131719-1131799 4.9e-06 32_[+4]_40 chrII:11027971-11028051 4.9e-06 38_[+4]_34 chrIV:7542748-7542828 4.9e-06 11_[+4]_61 chrIV:1034312-1034392 1.2e-05 16_[+4]_56 chrIV:5533718-5533798 1.2e-05 13_[+4]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGKGGGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGKGGGA width=8 seqs=5 chrIII:1131719-1131799 ( 33) TGGGGGGA 1 chrII:11027971-11028051 ( 39) TGGGGGGA 1 chrIV:7542748-7542828 ( 12) TGGGGGGA 1 chrIV:1034312-1034392 ( 17) TGGTGGGA 1 chrIV:5533718-5533798 ( 14) TGGTGGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGKGGGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.0849 E= 5.7e+003 -897 -897 -897 175 -897 -897 237 -897 -897 -897 237 -897 -897 -897 163 43 -897 -897 237 -897 -897 -897 237 -897 -897 -897 237 -897 170 -897 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGKGGGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 5.7e+003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.600000 0.400000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGKGGGA MEME-4 regular expression -------------------------------------------------------------------------------- TGG[GT]GGGA -------------------------------------------------------------------------------- Time 15.40 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCACCAC MEME-5 width = 8 sites = 5 llr = 60 E-value = 6.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCACCAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::a::a: pos.-specific C aaa:aa:a probability G :::::::: matrix T :::::::: bits 2.4 *** ** * 2.1 *** ** * 1.9 *** ** * 1.7 ******** Relative 1.4 ******** Entropy 1.2 ******** (17.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCCACCAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCACCAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:790516-790596 53 6.26e-06 TTCAGGGCAC CCCACCAC ACACAAATTT chrI:2755500-2755580 40 6.26e-06 AATGCGATTA CCCACCAC CCCCCGGCTG chrX:14694818-14694898 9 6.26e-06 CGAAGGCA CCCACCAC ACTACCAGCA chrIV:2537892-2537972 73 6.26e-06 TCTTGAGTCC CCCACCAC chrX:4424406-4424486 19 6.26e-06 TACTGTTCCA CCCACCAC AACAATTATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCACCAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:790516-790596 6.3e-06 52_[+5]_20 chrI:2755500-2755580 6.3e-06 39_[+5]_33 chrX:14694818-14694898 6.3e-06 8_[+5]_64 chrIV:2537892-2537972 6.3e-06 72_[+5] chrX:4424406-4424486 6.3e-06 18_[+5]_54 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCACCAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCACCAC width=8 seqs=5 chrI:790516-790596 ( 53) CCCACCAC 1 chrI:2755500-2755580 ( 40) CCCACCAC 1 chrX:14694818-14694898 ( 9) CCCACCAC 1 chrIV:2537892-2537972 ( 73) CCCACCAC 1 chrX:4424406-4424486 ( 19) CCCACCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCACCAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.2675 E= 6.2e+003 -897 231 -897 -897 -897 231 -897 -897 -897 231 -897 -897 170 -897 -897 -897 -897 231 -897 -897 -897 231 -897 -897 170 -897 -897 -897 -897 231 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCACCAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.2e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCACCAC MEME-5 regular expression -------------------------------------------------------------------------------- CCCACCAC -------------------------------------------------------------------------------- Time 18.58 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:9772127-9772207 2.76e-01 80 chrV:9768962-9769042 1.47e-02 80 chrX:13246829-13246909 2.21e-02 35_[+3(6.72e-05)]_37 chrV:8254064-8254144 1.11e-01 80 chrI:277180-277260 1.65e-03 35_[+1(9.31e-05)]_37 chrII:14470187-14470267 1.90e-01 80 chrI:14838039-14838119 2.23e-01 80 chrX:10151082-10151162 2.69e-01 49_[+1(9.31e-05)]_23 chrI:6806768-6806848 7.07e-01 80 chrX:11570121-11570201 1.54e-01 80 chrI:4222496-4222576 8.18e-02 80 chrV:1223703-1223783 8.00e-01 80 chrII:6116875-6116955 4.42e-01 80 chrIV:11431596-11431676 6.90e-02 21_[+1(9.31e-05)]_51 chrII:354648-354728 1.66e-03 51_[+4(4.76e-05)]_21 chrV:9771470-9771550 6.59e-01 80 chrV:13165396-13165476 2.56e-01 32_[+1(9.31e-05)]_40 chrII:10696237-10696317 1.17e-01 45_[+3(5.28e-05)]_27 chrV:12818622-12818702 3.99e-01 80 chrX:9805617-9805697 3.51e-01 80 chrV:20872113-20872193 1.01e-02 70_[+1(9.31e-05)]_2 chrX:4424406-4424486 4.37e-03 18_[+5(6.26e-06)]_54 chrX:3901562-3901642 2.04e-03 47_[+2(8.03e-06)]_[+2(3.35e-05)]_17 chrI:4795896-4795976 2.66e-01 80 chrII:7338123-7338203 8.52e-01 80 chrX:12549220-12549300 2.09e-01 80 chrV:13294674-13294754 4.75e-02 80 chrX:10619967-10620047 7.97e-02 19_[+3(5.28e-05)]_53 chrX:2519023-2519103 2.51e-01 80 chrII:10999251-10999331 2.91e-02 80 chrX:5278408-5278488 4.31e-01 80 chrV:13114698-13114778 2.91e-02 80 chrI:9568496-9568576 1.86e-02 61_[+2(3.35e-05)]_11 chrX:12479198-12479278 1.44e-01 16_[+1(9.31e-05)]_56 chrIV:7542748-7542828 3.88e-04 11_[+4(4.88e-06)]_39_[+1(9.31e-05)]_\ 14 chrIII:4103327-4103407 1.08e-01 80 chrIV:10188653-10188733 2.68e-01 55_[+1(9.31e-05)]_17 chrIII:2904331-2904411 4.62e-01 80 chrI:2157247-2157327 5.69e-02 80 chrII:6190952-6191032 6.06e-02 34_[+1(9.31e-05)]_38 chrX:5723941-5724021 1.17e-01 80 chrX:8391645-8391725 8.01e-01 80 chrI:11655418-11655498 2.33e-03 42_[+1(9.31e-05)]_10_[+2(6.68e-05)]_\ 12 chrV:9763918-9763998 3.82e-02 80 chrIII:9867495-9867575 1.16e-02 5_[+1(9.31e-05)]_24_[+1(9.31e-05)]_\ 35 chrI:13041787-13041867 2.35e-01 80 chrX:14638492-14638572 5.67e-02 49_[+1(9.31e-05)]_23 chrX:14696079-14696159 1.15e-01 70_[+1(9.31e-05)]_2 chrI:10283693-10283773 3.42e-02 80 chrIV:11723420-11723500 2.92e-02 [+3(5.28e-05)]_10_[+3(5.28e-05)]_54 chrX:15742580-15742660 4.46e-01 80 chrI:272681-272761 8.40e-01 80 chrIV:10571194-10571274 2.02e-01 80 chrV:10818618-10818698 1.10e-01 80 chrX:13509097-13509177 8.54e-01 80 chrIV:14960236-14960316 6.90e-02 4_[+1(9.31e-05)]_68 chrV:3452612-3452692 6.99e-04 24_[+2(2.08e-05)]_12_[+1(9.31e-05)]_\ 19_[+2(3.86e-05)]_1 chrII:6393810-6393890 4.35e-01 80 chrIII:3224251-3224331 3.37e-01 80 chrX:3040161-3040241 6.45e-02 80 chrX:6691819-6691899 6.27e-01 80 chrII:8588595-8588675 1.57e-01 80 chrX:10011837-10011917 2.90e-01 80 chrX:13170963-13171043 2.35e-02 80 chrIV:5533718-5533798 1.35e-04 13_[+4(1.23e-05)]_29_[+2(3.86e-05)]_\ 22 chrIII:13123608-13123688 2.96e-02 28_[+2(2.08e-05)]_44 chrX:15548060-15548140 7.28e-02 80 chrIII:4132304-4132384 5.61e-02 11_[+2(2.08e-05)]_1_[+2(2.08e-05)]_\ 52 chrX:2922964-2923044 1.92e-01 80 chrIII:6838179-6838259 3.78e-01 80 chrX:5975403-5975483 3.03e-01 80 chrI:3426016-3426096 9.98e-02 80 chrI:7418068-7418148 2.43e-03 65_[+2(3.35e-05)]_7 chrV:3451789-3451869 2.30e-01 80 chrX:6390122-6390202 6.41e-01 80 chrIII:8744170-8744250 1.75e-02 [+3(5.28e-05)]_16_[+1(9.31e-05)]_48 chrIV:9655715-9655795 9.65e-02 28_[+1(9.31e-05)]_44 chrI:1653571-1653651 4.54e-02 37_[+1(9.31e-05)]_35 chrX:14652227-14652307 2.64e-01 80 chrX:3619001-3619081 1.81e-02 36_[+2(7.19e-05)]_36 chrII:10084634-10084714 1.19e-01 80 chrX:305196-305276 3.95e-01 80 chrI:8263001-8263081 1.27e-02 20_[+1(9.31e-05)]_52 chrIV:17233653-17233733 9.02e-02 80 chrV:9605250-9605330 1.89e-01 80 chrV:11337028-11337108 6.66e-04 11_[+3(2.13e-05)]_23_[+1(9.31e-05)]_\ 30 chrX:14959826-14959906 5.04e-03 29_[+4(4.76e-05)]_43 chrI:11656597-11656677 1.57e-03 15_[+2(3.35e-05)]_57 chrI:9502682-9502762 7.95e-02 80 chrX:5131909-5131989 1.77e-01 80 chrV:13020167-13020247 6.19e-02 80 chrX:6705286-6705366 2.28e-01 80 chrIII:8877154-8877234 9.76e-02 7_[+1(9.31e-05)]_65 chrI:9475704-9475784 2.61e-01 80 chrI:4930325-4930405 3.79e-02 61_[+3(6.72e-05)]_11 chrIII:5402588-5402668 5.93e-01 80 chrX:11328884-11328964 3.23e-01 80 chrX:5983370-5983450 3.66e-01 80 chrI:782758-782838 1.32e-01 80 chrI:7885984-7886064 1.52e-01 80 chrI:5938851-5938931 1.63e-01 80 chrX:8652518-8652598 3.65e-01 80 chrII:6493303-6493383 2.36e-01 80 chrX:5869761-5869841 1.03e-01 80 chrV:20645639-20645719 2.36e-01 80 chrX:9373848-9373928 1.16e-01 80 chrX:2519694-2519774 2.25e-01 80 chrIII:2921019-2921099 3.00e-01 80 chrI:14257221-14257301 3.92e-02 25_[+2(3.35e-05)]_47 chrIV:6363741-6363821 6.18e-03 80 chrX:11345687-11345767 2.42e-03 80 chrX:11406033-11406113 2.41e-02 33_[+1(9.31e-05)]_39 chrI:8782604-8782684 2.42e-01 80 chrI:14068131-14068211 3.74e-02 80 chrX:14662627-14662707 1.10e-01 64_[+1(9.31e-05)]_8 chrV:12210125-12210205 2.08e-01 80 chrX:2725924-2726004 2.11e-01 80 chrIV:2537892-2537972 6.81e-05 43_[+1(9.31e-05)]_21_[+5(6.26e-06)] chrV:13812458-13812538 6.38e-02 80 chrIII:6073065-6073145 5.68e-01 80 chrV:9977397-9977477 3.41e-03 27_[+2(6.68e-05)]_45 chrV:10721472-10721552 3.69e-01 80 chrI:9570695-9570775 5.74e-02 80 chrII:8152857-8152937 1.39e-01 41_[+1(9.31e-05)]_31 chrV:9768084-9768164 2.06e-01 80 chrX:11744752-11744832 4.27e-01 80 chrV:19354653-19354733 5.25e-02 30_[+1(9.31e-05)]_42 chrI:794391-794471 3.17e-02 71_[+2(3.35e-05)]_1 chrV:13707421-13707501 9.94e-01 80 chrIV:1212500-1212580 3.37e-01 80 chrX:3875890-3875970 1.56e-01 80 chrIII:3588357-3588437 4.64e-02 67_[+3(5.28e-05)]_5 chrX:9978265-9978345 1.22e-01 80 chrX:8770489-8770569 1.68e-01 80 chrIII:3414562-3414642 1.05e-01 80 chrV:9765104-9765184 7.00e-02 80 chrV:14854403-14854483 1.00e-01 80 chrIV:13763591-13763671 4.76e-02 62_[+1(9.31e-05)]_10 chrI:801458-801538 1.24e-01 80 chrII:14098535-14098615 2.01e-04 44_[+5(6.26e-06)]_28 chrIII:6110343-6110423 9.72e-01 80 chrV:1227901-1227981 2.00e-04 53_[+2(8.03e-06)]_6_[+1(9.31e-05)]_\ 5 chrI:798769-798849 1.93e-01 80 chrIII:11358431-11358511 1.08e-02 80 chrV:10816982-10817062 1.68e-01 80 chrI:453625-453705 9.43e-02 80 chrIV:7272879-7272959 2.62e-01 80 chrX:13876081-13876161 7.90e-02 80 chrIII:10583633-10583713 8.16e-03 10_[+2(3.35e-05)]_62 chrI:14608280-14608360 5.60e-01 80 chrV:12330202-12330282 1.95e-01 80 chrV:20220768-20220848 2.34e-02 80 chrIV:962022-962102 5.67e-03 80 chrIII:8284973-8285053 1.22e-01 1_[+3(5.28e-05)]_71 chrIV:1034312-1034392 1.24e-03 16_[+4(1.23e-05)]_25_[+2(9.30e-05)]_\ 23 chrX:6964030-6964110 7.78e-02 80 chrII:4574831-4574911 1.52e-02 10_[+3(5.28e-05)]_62 chrI:14831276-14831356 2.68e-02 80 chrX:15041495-15041575 5.07e-01 80 chrI:11134952-11135032 5.71e-01 80 chrIII:3136745-3136825 2.20e-03 29_[+2(8.50e-05)]_43 chrX:3181503-3181583 1.61e-02 18_[+2(5.88e-05)]_54 chrV:13027653-13027733 1.53e-03 41_[+1(9.31e-05)]_31 chrIV:11717638-11717718 9.92e-04 52_[+1(9.31e-05)]_20 chrII:14644626-14644706 1.13e-01 80 chrIV:3860581-3860661 3.56e-02 80 chrX:4426657-4426737 8.35e-01 80 chrIV:4567933-4568013 1.76e-01 30_[+1(9.31e-05)]_42 chrIV:5109118-5109198 1.64e-03 40_[+3(2.13e-05)]_32 chrX:7679996-7680076 3.55e-01 80 chrIV:563565-563645 4.00e-03 80 chrII:14432240-14432320 7.84e-01 80 chrV:1252918-1252998 2.19e-03 13_[+3(2.13e-05)]_59 chrII:12711654-12711734 5.28e-01 80 chrV:11279253-11279333 4.54e-02 37_[+1(9.31e-05)]_35 chrV:10880293-10880373 3.91e-02 80 chrIII:4028224-4028304 5.80e-01 80 chrV:1244459-1244539 1.26e-01 80 chrX:5564117-5564197 1.25e-01 80 chrIII:1733566-1733646 1.50e-03 16_[+4(4.76e-05)]_56 chrI:11126457-11126537 1.46e-01 80 chrV:9157710-9157790 2.12e-01 80 chrX:14694818-14694898 4.81e-03 8_[+5(6.26e-06)]_64 chrX:4128846-4128926 2.38e-02 80 chrI:273832-273912 1.10e-01 13_[+3(6.72e-05)]_59 chrX:3202508-3202588 6.60e-01 80 chrV:12748005-12748085 6.12e-03 14_[+2(5.88e-05)]_58 chrV:13114099-13114179 4.69e-02 47_[+2(2.08e-05)]_25 chrII:12067601-12067681 1.92e-01 80 chrV:13681595-13681675 1.10e-02 54_[+3(6.72e-05)]_18 chrV:7816691-7816771 2.19e-01 80 chrI:7332861-7332941 4.16e-02 80 chrX:8648705-8648785 7.95e-01 80 chrX:17170553-17170633 5.00e-01 80 chrIII:8276930-8277010 7.62e-03 46_[+2(2.08e-05)]_26 chrX:9803771-9803851 2.10e-01 80 chrIV:3667966-3668046 3.91e-02 80 chrV:8716359-8716439 3.15e-02 70_[+3(5.28e-05)]_2 chrV:12205528-12205608 2.80e-01 13_[+1(9.31e-05)]_59 chrIII:3970547-3970627 9.37e-05 11_[+2(3.35e-05)]_41_[+3(5.28e-05)]_\ 12 chrX:3584629-3584709 2.26e-01 80 chrV:19177228-19177308 4.04e-01 80 chrX:3201359-3201439 3.75e-02 80 chrIII:612064-612144 1.97e-02 1_[+1(9.31e-05)]_71 chrII:11032972-11033052 4.79e-01 80 chrI:2755500-2755580 3.57e-03 39_[+5(6.26e-06)]_33 chrIII:11359616-11359696 3.09e-01 80 chrI:2697205-2697285 1.76e-02 14_[+3(6.72e-05)]_58 chrX:15125260-15125340 3.23e-02 61_[+1(9.31e-05)]_11 chrIV:8096558-8096638 2.54e-02 11_[+2(3.35e-05)]_61 chrII:11027971-11028051 1.02e-03 38_[+4(4.88e-06)]_34 chrV:7171468-7171548 2.22e-01 66_[+3(5.28e-05)]_6 chrII:6454463-6454543 2.22e-01 80 chrIV:3096279-3096359 2.25e-03 68_[+1(9.31e-05)]_4 chrX:13021617-13021697 1.28e-01 9_[+1(9.31e-05)]_63 chrI:11136486-11136566 5.38e-02 80 chrII:4129591-4129671 2.42e-01 80 chrII:10038714-10038794 2.09e-01 19_[+1(9.31e-05)]_53 chrIV:10195789-10195869 1.22e-01 19_[+1(9.31e-05)]_53 chrII:4579495-4579575 9.29e-01 80 chrI:10169455-10169535 1.02e-01 [+2(8.50e-05)]_72 chrX:757031-757111 9.53e-03 80 chrIV:5927947-5928027 4.78e-03 46_[+1(9.31e-05)]_5_[+2(2.08e-05)]_\ 13 chrII:7719153-7719233 2.17e-01 80 chrI:7716697-7716777 5.57e-02 39_[+2(5.88e-05)]_33 chrV:1313420-1313500 5.27e-03 19_[+2(8.03e-06)]_1_[+2(2.08e-05)]_\ 44 chrIII:10018160-10018240 1.52e-02 80 chrIV:6547571-6547651 4.68e-01 80 chrX:2045726-2045806 1.79e-02 72_[+1(9.31e-05)] chrIII:1131719-1131799 2.16e-03 32_[+4(4.88e-06)]_40 chrII:11499625-11499705 5.42e-02 80 chrIII:8289335-8289415 5.16e-02 80 chrI:816383-816463 7.50e-01 80 chrX:6970312-6970392 2.37e-02 80 chrIV:8056935-8057015 3.90e-01 80 chrIII:4524214-4524294 9.28e-02 39_[+2(3.35e-05)]_33 chrIII:4967398-4967478 7.34e-02 45_[+3(5.28e-05)]_27 chrIV:10572245-10572325 3.74e-01 80 chrI:10389775-10389855 3.30e-02 14_[+3(2.13e-05)]_58 chrII:14938504-14938584 8.62e-02 80 chrII:7594416-7594496 7.06e-02 35_[+1(9.31e-05)]_37 chrII:8301976-8302056 5.60e-02 59_[+2(3.35e-05)]_13 chrX:8445082-8445162 4.78e-02 25_[+1(9.31e-05)]_47 chrV:16749657-16749737 8.05e-03 22_[+1(9.31e-05)]_50 chrV:11342071-11342151 5.95e-02 80 chrI:4008894-4008974 4.82e-02 80 chrI:790516-790596 4.15e-03 52_[+5(6.26e-06)]_20 chrIV:5811623-5811703 4.31e-01 80 chrIII:989672-989752 3.36e-03 33_[+1(9.31e-05)]_39 chrI:7517528-7517608 8.56e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n04.farnam.hpc.yale.internal ********************************************************************************