******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-90.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII:4862116-4862196 1.0000 80 chrI:2385141-2385221 1.0000 80 chrIII:12247458-12247538 1.0000 80 chrIII:3322762-3322842 1.0000 80 chrII:1500460-1500540 1.0000 80 chrIV:9797520-9797600 1.0000 80 chrIV:2706804-2706884 1.0000 80 chrV:14133193-14133273 1.0000 80 chrV:1060319-1060399 1.0000 80 chrI:3059145-3059225 1.0000 80 chrII:2157687-2157767 1.0000 80 chrIII:7858649-7858729 1.0000 80 chrIV:11592955-11593035 1.0000 80 chrIV:6369658-6369738 1.0000 80 chrV:10441283-10441363 1.0000 80 chrIII:13439567-13439647 1.0000 80 chrIV:2987098-2987178 1.0000 80 chrIV:5188202-5188282 1.0000 80 chrII:1123346-1123426 1.0000 80 chrI:2830390-2830470 1.0000 80 chrI:636784-636864 1.0000 80 chrI:5118907-5118987 1.0000 80 chrIII:1540267-1540347 1.0000 80 chrI:8255146-8255226 1.0000 80 chrV:20090837-20090917 1.0000 80 chrI:7676284-7676364 1.0000 80 chrIII:3322560-3322640 1.0000 80 chrIV:2705554-2705634 1.0000 80 chrIV:3807720-3807800 1.0000 80 chrIII:8967810-8967890 1.0000 80 chrIII:5190356-5190436 1.0000 80 chrIV:1347142-1347222 1.0000 80 chrIII:12673521-12673601 1.0000 80 chrI:9080114-9080194 1.0000 80 chrII:5511873-5511953 1.0000 80 chrII:484586-484666 1.0000 80 chrIV:2224810-2224890 1.0000 80 chrV:156219-156299 1.0000 80 chrIV:8019895-8019975 1.0000 80 chrX:2857568-2857648 1.0000 80 chrII:14857079-14857159 1.0000 80 chrV:2603171-2603251 1.0000 80 chrI:10835357-10835437 1.0000 80 chrV:13409228-13409308 1.0000 80 chrIV:4712613-4712693 1.0000 80 chrI:11222151-11222231 1.0000 80 chrIII:11286252-11286332 1.0000 80 chrIV:7816566-7816646 1.0000 80 chrIV:257300-257380 1.0000 80 chrI:5281826-5281906 1.0000 80 chrII:10714417-10714497 1.0000 80 chrV:10031896-10031976 1.0000 80 chrIV:8235521-8235601 1.0000 80 chrIII:11415681-11415761 1.0000 80 chrIV:9777704-9777784 1.0000 80 chrIV:10242844-10242924 1.0000 80 chrI:8664868-8664948 1.0000 80 chrI:4215771-4215851 1.0000 80 chrIV:4171905-4171985 1.0000 80 chrI:14756448-14756528 1.0000 80 chrIV:4042403-4042483 1.0000 80 chrX:16376147-16376227 1.0000 80 chrV:16022776-16022856 1.0000 80 chrII:5819836-5819916 1.0000 80 chrI:13835174-13835254 1.0000 80 chrIV:13783690-13783770 1.0000 80 chrII:11464079-11464159 1.0000 80 chrIII:4343281-4343361 1.0000 80 chrIII:12665756-12665836 1.0000 80 chrIV:6747824-6747904 1.0000 80 chrX:1853745-1853825 1.0000 80 chrIII:8700710-8700790 1.0000 80 chrI:8511444-8511524 1.0000 80 chrIII:4986952-4987032 1.0000 80 chrII:12914849-12914929 1.0000 80 chrIV:813491-813571 1.0000 80 chrV:20424929-20425009 1.0000 80 chrIII:5803106-5803186 1.0000 80 chrIV:12278674-12278754 1.0000 80 chrIV:17126617-17126697 1.0000 80 chrV:13551779-13551859 1.0000 80 chrIII:4905491-4905571 1.0000 80 chrIV:12653250-12653330 1.0000 80 chrX:7798523-7798603 1.0000 80 chrV:9536691-9536771 1.0000 80 chrIII:12665960-12666040 1.0000 80 chrI:5659141-5659221 1.0000 80 chrIII:8683848-8683928 1.0000 80 chrIII:10628079-10628159 1.0000 80 chrIV:2705777-2705857 1.0000 80 chrIV:11315032-11315112 1.0000 80 chrIII:10064298-10064378 1.0000 80 chrIV:10890255-10890335 1.0000 80 chrI:8759889-8759969 1.0000 80 chrII:11578470-11578550 1.0000 80 chrV:4387722-4387802 1.0000 80 chrI:10161986-10162066 1.0000 80 chrV:265227-265307 1.0000 80 chrI:13559836-13559916 1.0000 80 chrIII:9808286-9808366 1.0000 80 chrII:5512076-5512156 1.0000 80 chrI:9860243-9860323 1.0000 80 chrII:15089575-15089655 1.0000 80 chrI:9112102-9112182 1.0000 80 chrII:9931147-9931227 1.0000 80 chrX:2176559-2176639 1.0000 80 chrV:10320321-10320401 1.0000 80 chrV:1949534-1949614 1.0000 80 chrIII:2582524-2582604 1.0000 80 chrIII:8529054-8529134 1.0000 80 chrI:6760274-6760354 1.0000 80 chrIV:8498877-8498957 1.0000 80 chrIII:4912468-4912548 1.0000 80 chrV:10736873-10736953 1.0000 80 chrIII:13187924-13188004 1.0000 80 chrV:6107615-6107695 1.0000 80 chrIII:9465603-9465683 1.0000 80 chrII:2752712-2752792 1.0000 80 chrII:2451164-2451244 1.0000 80 chrII:11290553-11290633 1.0000 80 chrIV:2219865-2219945 1.0000 80 chrI:5106142-5106222 1.0000 80 chrIV:16415765-16415845 1.0000 80 chrIV:1328668-1328748 1.0000 80 chrII:2794415-2794495 1.0000 80 chrV:17870864-17870944 1.0000 80 chrI:12816566-12816646 1.0000 80 chrIII:11112927-11113007 1.0000 80 chrIV:13263037-13263117 1.0000 80 chrII:8927416-8927496 1.0000 80 chrII:3815347-3815427 1.0000 80 chrIV:13289505-13289585 1.0000 80 chrIV:1446337-1446417 1.0000 80 chrI:3636638-3636718 1.0000 80 chrIV:16422334-16422414 1.0000 80 chrV:6433731-6433811 1.0000 80 chrII:4993958-4994038 1.0000 80 chrV:13657014-13657094 1.0000 80 chrX:13584999-13585079 1.0000 80 chrX:16605217-16605297 1.0000 80 chrI:9393779-9393859 1.0000 80 chrII:2991817-2991897 1.0000 80 chrV:13085760-13085840 1.0000 80 chrIV:3803417-3803497 1.0000 80 chrII:6097607-6097687 1.0000 80 chrX:7569823-7569903 1.0000 80 chrII:10200906-10200986 1.0000 80 chrI:15013985-15014065 1.0000 80 chrI:96487-96567 1.0000 80 chrII:10395528-10395608 1.0000 80 chrI:11668034-11668114 1.0000 80 chrI:7080471-7080551 1.0000 80 chrV:2127171-2127251 1.0000 80 chrIII:10720686-10720766 1.0000 80 chrI:9445805-9445885 1.0000 80 chrI:13470415-13470495 1.0000 80 chrII:15197280-15197360 1.0000 80 chrV:7084881-7084961 1.0000 80 chrII:13180444-13180524 1.0000 80 chrIII:13474691-13474771 1.0000 80 chrX:14514570-14514650 1.0000 80 chrV:16537937-16538017 1.0000 80 chrIII:8850807-8850887 1.0000 80 chrII:476161-476241 1.0000 80 chrIV:4086109-4086189 1.0000 80 chrIII:2331292-2331372 1.0000 80 chrIII:7199004-7199084 1.0000 80 chrII:6383338-6383418 1.0000 80 chrIII:8144750-8144830 1.0000 80 chrV:10148495-10148575 1.0000 80 chrIII:11290693-11290773 1.0000 80 chrIV:16995572-16995652 1.0000 80 chrIII:6625448-6625528 1.0000 80 chrIV:6752583-6752663 1.0000 80 chrII:3482365-3482445 1.0000 80 chrIII:4196740-4196820 1.0000 80 chrIII:6008862-6008942 1.0000 80 chrV:6230114-6230194 1.0000 80 chrX:3379244-3379324 1.0000 80 chrIII:12218850-12218930 1.0000 80 chrII:10538101-10538181 1.0000 80 chrIII:12673728-12673808 1.0000 80 chrII:12661875-12661955 1.0000 80 chrIII:12273753-12273833 1.0000 80 chrI:1034341-1034421 1.0000 80 chrI:7159316-7159396 1.0000 80 chrIII:11113196-11113276 1.0000 80 chrIV:1761785-1761865 1.0000 80 chrI:2985253-2985333 1.0000 80 chrII:13583080-13583160 1.0000 80 chrV:18717807-18717887 1.0000 80 chrV:15082458-15082538 1.0000 80 chrI:5312421-5312501 1.0000 80 chrIII:12369987-12370067 1.0000 80 chrX:10000320-10000400 1.0000 80 chrV:18981151-18981231 1.0000 80 chrI:3070205-3070285 1.0000 80 chrX:4853170-4853250 1.0000 80 chrI:10192873-10192953 1.0000 80 chrII:4791431-4791511 1.0000 80 chrIII:4905694-4905774 1.0000 80 chrIV:6631985-6632065 1.0000 80 chrII:6776815-6776895 1.0000 80 chrI:851599-851679 1.0000 80 chrIII:4999027-4999107 1.0000 80 chrII:11176624-11176704 1.0000 80 chrI:4247572-4247652 1.0000 80 chrIII:9868277-9868357 1.0000 80 chrII:11542488-11542568 1.0000 80 chrIV:10381110-10381190 1.0000 80 chrX:8953122-8953202 1.0000 80 chrII:5081678-5081758 1.0000 80 chrI:2710510-2710590 1.0000 80 chrIII:11445443-11445523 1.0000 80 chrII:13117289-13117369 1.0000 80 chrV:4042134-4042214 1.0000 80 chrX:3999731-3999811 1.0000 80 chrIV:15526636-15526716 1.0000 80 chrV:16538164-16538244 1.0000 80 chrV:13568676-13568756 1.0000 80 chrX:15745374-15745454 1.0000 80 chrI:2097061-2097141 1.0000 80 chrIII:5108934-5109014 1.0000 80 chrI:5375462-5375542 1.0000 80 chrIII:783429-783509 1.0000 80 chrIII:1540470-1540550 1.0000 80 chrI:3176574-3176654 1.0000 80 chrIV:1687302-1687382 1.0000 80 chrV:14317774-14317854 1.0000 80 chrII:3553655-3553735 1.0000 80 chrI:13422658-13422738 1.0000 80 chrIII:12612353-12612433 1.0000 80 chrIII:5722027-5722107 1.0000 80 chrIV:8973689-8973769 1.0000 80 chrIII:12278911-12278991 1.0000 80 chrIV:2707003-2707083 1.0000 80 chrIII:5499061-5499141 1.0000 80 chrV:11029448-11029528 1.0000 80 chrIV:5548980-5549060 1.0000 80 chrV:7465707-7465787 1.0000 80 chrV:20416779-20416859 1.0000 80 chrI:2776222-2776302 1.0000 80 chrV:5843502-5843582 1.0000 80 chrV:10526077-10526157 1.0000 80 chrII:8039582-8039662 1.0000 80 chrIII:2576300-2576380 1.0000 80 chrII:9968484-9968564 1.0000 80 chrIV:12559172-12559252 1.0000 80 chrIII:10719370-10719450 1.0000 80 chrIII:5068965-5069045 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ceh-90/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-90.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.282 C 0.216 G 0.22 T 0.281 Background letter frequencies (from file dataset with add-one prior applied): A 0.282 C 0.216 G 0.22 T 0.281 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF YGGCCDMG MEME-1 width = 8 sites = 161 llr = 1252 E-value = 2.0e-152 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGGCCDMG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1::::25: pos.-specific C 4::aa:31 probability G :aa::5:9 matrix T 5::::32: bits 2.2 * 2.0 **** 1.8 **** * 1.5 **** * Relative 1.3 **** * Entropy 1.1 **** * (11.2 bits) 0.9 **** * 0.7 **** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGGCCGAG consensus C TC sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCDMG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:9968484-9968564 39 1.53e-05 CCCATGGCCG TGGCCGAG TCTACAACTA chrIII:783429-783509 47 1.53e-05 TTGAAATTCG TGGCCGAG GCCTAGGATT chrIII:5108934-5109014 57 1.53e-05 TTGGAAACGA TGGCCGAG TCTGAATGGC chrIV:15526636-15526716 35 1.53e-05 GAGGACTACA CGGCCGAG ATTCCGACAA chrX:3379244-3379324 50 1.53e-05 GATTTGCGCA TGGCCGAG CCGGGAAGAA chrIII:11290693-11290773 42 1.53e-05 ACACACCGGG TGGCCGAG TGGGGATTTC chrII:6097607-6097687 35 1.53e-05 GAGGAGTACA CGGCCGAG CATGCTCCGC chrX:13584999-13585079 27 1.53e-05 GCGCCACATA CGGCCGAG GTTTCACGCG chrIV:16415765-16415845 18 1.53e-05 GAGGAGTACA CGGCCGAG TGGCCTAGGA chrII:11290553-11290633 12 1.53e-05 GAGGAGTACA CGGCCGAG AATCCCAAAC chrII:2451164-2451244 52 1.53e-05 CCGTGGCCGG CGGCCGAG GATTTGCGGC chrI:6760274-6760354 45 1.53e-05 AGTTTCCACA TGGCCGAG CTATCTCGTG chrIII:10064298-10064378 19 1.53e-05 AAATCAAGCC TGGCCGAG GTGGCCGTGG chrIII:10628079-10628159 40 1.53e-05 GGAAACACGA TGGCCGAG TTTTTGTTTT chrIV:12653250-12653330 38 1.53e-05 CTGGGTCTCG TGGCCGAG ATTCCGACAC chrIII:5803106-5803186 36 1.53e-05 CTAGTTTTCA CGGCCGAG AAATGTCACA chrV:13409228-13409308 30 1.53e-05 GAGGAGTACA CGGCCGAG AATCACAAAA chrII:14857079-14857159 15 1.53e-05 CCCGCTGCGG TGGCCGAG TCCCTGCCGG chrIII:12673521-12673601 45 1.53e-05 CACGGCGTGG TGGCCGAG ACCCCGACTC chrIV:1347142-1347222 10 1.53e-05 AAGTGGCCG CGGCCGAG GAGGAAACCT chrII:1123346-1123426 21 1.53e-05 AAATAAATGG TGGCCGAG GAGGGGTTTT chrIV:6369658-6369738 23 1.53e-05 GAGGAGTACA CGGCCGAG TATCACACAA chrIII:5068965-5069045 11 2.71e-05 ACCGCGGTTT TGGCCGCG GACTAGTGTT chrI:4247572-4247652 35 2.71e-05 CTAGGCCACG CGGCCGCG TACTCCTCGA chrX:4853170-4853250 30 2.71e-05 GTCGTATCTT CGGCCGCG GCCACGACCA chrII:3482365-3482445 9 2.71e-05 AATATCCG TGGCCGCG GCCTAAGAAC chrII:6383338-6383418 18 2.71e-05 TTTTTCCCGA TGGCCGCG GACTAGCCAT chrI:13470415-13470495 52 2.71e-05 AAAACGCGCG TGGCCGCG AGGGGGAAAT chrX:7569823-7569903 15 2.71e-05 GAGTACTTCA CGGCCGCG TGGCCTAGTT chrIV:13289505-13289585 44 2.71e-05 AGAATCTGCA CGGCCGCG CGCGCGTGCA chrIII:11112927-11113007 58 2.71e-05 tcctcggcca cggccgcg aaacgttttc chrI:13835174-13835254 35 2.71e-05 GGGAAAATGA TGGCCGCG GCCGCCATTT chrV:16022776-16022856 35 2.71e-05 GGTGGCCGCG TGGCCGCG GACTAAGTGA chrIV:4042403-4042483 42 2.71e-05 TCTTTTCTCG TGGCCGCG GCCTAGAAAT chrI:8664868-8664948 1 2.71e-05 . CGGCCGCG GACGAAATTA chrIV:8019895-8019975 46 2.71e-05 TCTCGTCCCT CGGCCGCG CTGAGATTTC chrIII:8967810-8967890 10 2.71e-05 CGAAAATGG TGGCCGCG TGGCCGAACT chrV:20090837-20090917 36 2.71e-05 AACAACACAC TGGCCGCG GCCTAGAAAA chrIII:1540267-1540347 17 2.71e-05 TAAATTCCCG TGGCCGCG GCCTAGAAAT chrI:636784-636864 47 2.71e-05 TCCTAGTCCA CGGCCGCG CACGATTTAC chrV:7465707-7465787 20 4.66e-05 GGCATGGACG TGGCCTAG AATTCCCCAA chrI:2097061-2097141 42 4.66e-05 CTCGAAATAC TGGCCTAG GATTCATGCG chrII:6776815-6776895 41 4.66e-05 TTCCATGCGG CGGCCTAG AAAATTATGG chrI:10192873-10192953 67 4.66e-05 GACACGGCCG TGGCCTAG AATTCT chrIII:11113196-11113276 14 4.66e-05 AATCGTGTGG TGGCCTAG GTTTCATATG chrII:12661875-12661955 27 4.66e-05 TTCAATTCGG TGGCCTAG AAAACCTTTC chrIII:4196740-4196820 14 4.66e-05 CAGGATCCAA TGGCCTAG CTTTACCCAG chrIII:7199004-7199084 13 4.66e-05 ATTGAACCAT TGGCCTAG AAAATTCAAA chrV:7084881-7084961 33 4.66e-05 ACGCGCCGGC TGGCCTAG AAACCAACCT chrI:9445805-9445885 8 4.66e-05 TCACCTA TGGCCTAG AAATTATTCT chrV:2127171-2127251 26 4.66e-05 CTCCTGTGAA TGGCCTAG AAATTGTGGC chrI:11668034-11668114 66 4.66e-05 TTAAAGTCTG TGGCCTAG TTTTGGA chrII:10200906-10200986 43 4.66e-05 CCGATGGCCG TGGCCTAG GAAACACAAC chrI:9393779-9393859 42 4.66e-05 CACGACATGC TGGCCTAG AAACCTCTGC chrII:4993958-4994038 44 4.66e-05 TCCTAGTCCA TGGCCTAG AAAACTCCAT chrII:2752712-2752792 39 4.66e-05 CGATTGCGCG TGGCCTAG CAGTGGAAAC chrIII:9465603-9465683 30 4.66e-05 ACGAGCGCGT TGGCCTAG AAAACGCATG chrV:6107615-6107695 55 4.66e-05 AACCGGGACG TGGCCTAG CGTTCCGCGA chrV:10736873-10736953 40 4.66e-05 AAACTTGAAT TGGCCTAG AAACCTTTCC chrIII:4912468-4912548 67 4.66e-05 TTCTCGGCCG TGGCCTAG AATATT chrIII:8529054-8529134 38 4.66e-05 GAATCGTCGC TGGCCTAG TTTTCTCTTT chrIII:2582524-2582604 34 4.66e-05 TGAACGAATA TGGCCTAG GAATCGTGTG chrII:11578470-11578550 60 4.66e-05 TAAACCTGCG TGGCCTAG GTGTAAGCGT chrIII:8683848-8683928 13 4.66e-05 CGGAAGGCCG TGGCCTAG GATTTGCGCG chrI:5659141-5659221 4 4.66e-05 ATA TGGCCTAG AAATATTCGC chrV:9536691-9536771 28 4.66e-05 CACCCAAACG TGGCCTAG CAATACCCAA chrIV:17126617-17126697 45 4.66e-05 TTGGTACATC TGGCCTAG CGAAAAGTGA chrV:20424929-20425009 45 4.66e-05 TTCCCAATGG TGGCCTAG AAAACCCCGA chrII:11464079-11464159 45 4.66e-05 TGTTAGGCCA TGGCCTAG AAAAGAAGCt chrX:16376147-16376227 24 4.66e-05 CGATTCGCCG TGGCCTAG AAACCGCGAG chrIV:4171905-4171985 32 4.66e-05 TTTCTGCCCG CGGCCTAG AAACCTCCGT chrV:10031896-10031976 63 4.66e-05 CACGGCCGTG TGGCCTAG AAACTTCTTG chrIV:7816566-7816646 24 4.66e-05 CACCACCGTG TGGCCTAG GAAACTCTTG chrIV:2224810-2224890 25 4.66e-05 TTCAAGTTGG TGGCCTAG TTTTTAGATT chrIV:3807720-3807800 39 4.66e-05 TAGCAAAGCG TGGCCTAG GAATTTCGAG chrI:8255146-8255226 61 4.66e-05 AAACTGACGG TGGCCTAG AATCCGACAA chrI:5118907-5118987 24 4.66e-05 AAAATCAAGA TGGCCTAG AATTTCAACT chrIII:13439567-13439647 19 4.66e-05 AAAATATCGG TGGCCTAG TGGCCGTGGA chrV:10441283-10441363 4 4.66e-05 CCG CGGCCTAG AATCCGACAA chrI:3059145-3059225 17 4.66e-05 AAAATATAAA TGGCCTAG AATCCGACAC chrIV:9797520-9797600 16 4.66e-05 ACAAACGCCT TGGCCTAG AACTTTCACA chrIII:3322762-3322842 24 4.66e-05 AAAACCCTTA TGGCCTAG AAACCCCCGG chrIII:12247458-12247538 37 4.66e-05 TGAACGAATA TGGCCTAG AAATCGTGTG chrV:11029448-11029528 57 6.16e-05 TCGATTTCTG CGGCCTCG TCGAGCATTT chrIII:10719370-10719450 14 1.12e-04 GCGGTGTGCG TGGCCGTG AGAAGAGAAA chrII:8039582-8039662 39 1.12e-04 TTTAAGTCTT CGGCCACG TTGTCCTGCA chrIV:8973689-8973769 53 1.12e-04 CTAGTCCGCG CGGCCGTG TAGTCCTCTT chrIII:4999027-4999107 25 1.12e-04 GGAGAATCCT CGGCCACG GCCACCAGAA chrIV:6631985-6632065 22 1.12e-04 TTTCTTCGGT CGGCCGTG GGTCGCGAAT chrII:4791431-4791511 49 1.12e-04 ACTCGGCCGC CGGCCGTG TACTCCTCTC chrIV:1761785-1761865 55 1.12e-04 CGAGGATGCG TGGCCGTG AAACGGAAAA chrII:10538101-10538181 50 1.12e-04 AATTATTTCT CGGCCGTG TACTCCTCTC chrIV:16995572-16995652 42 1.12e-04 TCCTCTTCCA CGGCCACG CGGCCCCCAC chrII:476161-476241 63 1.12e-04 TTGCCGACGA TGGCCGTG TGGGGGTTTC chrII:10395528-10395608 42 1.12e-04 AGAAAAACTT CGGCCGTG TAGTCCTCTC chrI:5106142-5106222 68 1.12e-04 TTGTATTTCT CGGCCGTG GCCGA chrIV:8498877-8498957 38 1.12e-04 CGAGTTTTCT CGGCCACG GCCACGAAGT chrV:10320321-10320401 35 1.12e-04 AACTAGGCCA CGGCCACG CGTTCTCTCG chrII:15089575-15089655 44 1.12e-04 CTAGGCCACG CGGCCGTG TAGTCCTCCT chrI:10161986-10162066 14 1.12e-04 TTTTCGCTAG TGGCCGTG GCCGAACGCG chrIV:11315032-11315112 55 1.12e-04 GAATTTCGTG CGGCCGTG GCTGAGTTTT chrIII:4905491-4905571 4 1.12e-04 ACT CGGCCACG AATTGGGTAC chrIV:12278674-12278754 39 1.12e-04 CAACTTTTCT CGGCCGTG TACTCCTCGT chrII:12914849-12914929 52 1.12e-04 GGCGGATTCT CGGCCGTG TACTCCACTC chrIII:11415681-11415761 6 1.12e-04 GGCCG TGGCCGTG AAAAAAAAAC chrI:5281826-5281906 17 1.12e-04 ACGAATTTCT CGGCCACG GCCATCAGTT chrIV:257300-257380 9 1.12e-04 GGAGTACA CGGCCGTG TGGTCTAGAA chrIII:11286252-11286332 26 1.12e-04 CGGAGCCCCG CGGCCACG GCCCCCACGC chrI:11222151-11222231 36 1.12e-04 ACCTAGTCCA CGGCCACG CGGCCACCGA chrIV:4712613-4712693 19 1.12e-04 CTCGGCCACC CGGCCACG AAAACTCGGC chrI:9080114-9080194 25 1.12e-04 TGATGTTTTT CGGCCACG GCCACCGCAA chrIII:5190356-5190436 38 1.12e-04 CTGTAGTTCT CGGCCGTG TACTCCTCTC chrIV:5188202-5188282 42 1.12e-04 TTGTGAAACT CGGCCGTG TACTCCACTC chrIV:13783690-13783770 25 1.46e-04 TCAAAAACCT TGGCCTTG GCCGAAAAAC chrI:14756448-14756528 28 1.77e-04 ACCTCGGTCA CGGCCATG CCACTTTTTT chrV:2603171-2603251 43 1.77e-04 TCCTCGTCCA CGGCCATG CGAAATGCGC chrIV:11592955-11593035 49 1.77e-04 TGCTAGTCCG CGGCCATG ACTAATCAGA chrI:8759889-8759969 29 1.86e-04 CGCGTTTTCT AGGCCTCG TCCACTTGTG chrI:3176574-3176654 29 2.14e-04 GGAGAAAGTT AGGCCACG GCCACCACGG chrII:13117289-13117369 28 2.14e-04 CCGAAATGCT AGGCCACG CGTCGCGTAC chrI:851599-851679 54 2.14e-04 CAAAAAAGCT AGGCCACG TGGCAAGAAA chrI:1034341-1034421 52 2.14e-04 GCGGGTTTCT AGGCCACG GCCACCGAGG chrIII:8850807-8850887 51 2.14e-04 TGGAAATTCT AGGCCACG GATAACTATT chrI:3636638-3636718 36 2.14e-04 TGGGAAACCT AGGCCACG GCCATCGAGA chrV:156219-156299 32 2.14e-04 AAAGTTTCCT AGGCCACG CGACCGTGTA chrV:1060319-1060399 61 2.14e-04 CGCAATTTCT AGGCCACG CTGAGTCGCT chrIV:16422334-16422414 27 2.40e-04 ACCGGTCCCC CGGCCGCC GCCACGGCCC chrI:3070205-3070285 23 2.82e-04 TCGGTTAGCT TGTCCGAG AAGAGTACAC chrIII:6625448-6625528 70 2.82e-04 GGGTAGTTTT AGGCCATG AGC chrIII:8144750-8144830 7 2.82e-04 TGGCTC TGTCCGAG AGGAGTACAC chrI:96487-96567 69 2.82e-04 GGGAATTTCT AGGCCATG CTTG chrI:2830390-2830470 39 2.82e-04 CGCGGAAGTT AGGCCATG GAGAGGGGAA chrIII:4986952-4987032 42 3.16e-04 CGCAAAACCT CGTCCGCG AGAGAAAAAA chrII:5819836-5819916 64 3.16e-04 TCTGAAAACT CGTCCGCG ACAGTGAAA chrII:11176624-11176704 15 3.51e-04 ACGCGAGCTG TGGACGAG GAATCCGCCT chrII:9931147-9931227 65 3.51e-04 ATTTTGGCGG TGGACGAG GAATTCTC chrIV:813491-813571 24 3.51e-04 aaaagttgca TGGCCTCC ACCACGAGAA chrIII:9868277-9868357 56 4.15e-04 CTCTAGTCCG CGGCCACC GGAAAAGCGC chrIV:2987098-2987178 21 4.15e-04 ATCAAAAGTT CGGCCACC GATTTTTTTT chrIII:4343281-4343361 35 5.32e-04 ACACGGCCGA TGGACTAG GAACACACTG chrIII:13187924-13188004 4 5.96e-04 TTT TGTCCACG TGTAGTACGT chrX:10000320-10000400 55 6.60e-04 TCGTCTTTTT CTGCCGAG TTTGCAGCTA chrII:15197280-15197360 56 6.60e-04 taccggcaat ttgccgag ttgacgattt chrIV:3803417-3803497 67 6.60e-04 GTACTCCTCT CGGACAAG GGATTA chrX:7798523-7798603 47 6.60e-04 GTAGTACACT CGGACAAG TCATGTTTGT chrIII:12665756-12665836 67 7.25e-04 CTTTTTTCTC TGGACGTG AAAAAC chrV:10526077-10526157 30 7.84e-04 ACACGGCGGA TGGCCGAT AAAAAAGTTA chrIV:5548980-5549060 64 7.84e-04 TGAAACAATT CGGCCATC AAAGTGTTC chrIV:6747824-6747904 41 7.84e-04 GGAGGGAGTT AGTCCGCG GGCCGAACAC chrI:15013985-15014065 30 8.18e-04 GCTCGGCCAG AGGACGAG TTGGGTGGAA chrIV:10242844-10242924 71 8.47e-04 TTCAAACGCG GGGCCTAG AA chrIII:5722027-5722107 30 8.95e-04 GGAGGTTTCT AGGCCACC GGCTGTGTAC chrV:18981151-18981231 39 8.95e-04 AGAGTTTCCT AGGCCACC GCCGGTGTAC chrIV:2705777-2705857 2 8.95e-04 T AGGCCACC GATTTTTTTT chrX:1853745-1853825 24 8.95e-04 ATGAGATCTT AGGCCACC ACATGTGTGA chrII:5511873-5511953 55 8.95e-04 CATACTTTCT AGGCCACC ATTTAAATTT chrIV:2706804-2706884 16 8.95e-04 TTGGATTTCT AGGCCACC AAGTGAAAAA chrIII:10720686-10720766 28 1.20e-03 AAATCTCTAT TTGCCACG CGGAATTGCA chrI:7159316-7159396 50 1.26e-03 AAAGAAAGTT AGTCCGTG TACTCCACTC chrIV:1446337-1446417 53 1.26e-03 TTGGGATTCT AGTCCACG CTGGAAATGC chrII:8927416-8927496 12 1.33e-03 AGAAATTCGC TGGCCGTT CAGCAGACGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCDMG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:9968484-9968564 1.5e-05 38_[+1]_34 chrIII:783429-783509 1.5e-05 46_[+1]_26 chrIII:5108934-5109014 1.5e-05 56_[+1]_16 chrIV:15526636-15526716 1.5e-05 34_[+1]_38 chrX:3379244-3379324 1.5e-05 49_[+1]_23 chrIII:11290693-11290773 1.5e-05 41_[+1]_31 chrII:6097607-6097687 1.5e-05 34_[+1]_38 chrX:13584999-13585079 1.5e-05 26_[+1]_46 chrIV:16415765-16415845 1.5e-05 17_[+1]_55 chrII:11290553-11290633 1.5e-05 11_[+1]_61 chrII:2451164-2451244 1.5e-05 51_[+1]_21 chrI:6760274-6760354 1.5e-05 44_[+1]_28 chrIII:10064298-10064378 1.5e-05 18_[+1]_54 chrIII:10628079-10628159 1.5e-05 39_[+1]_33 chrIV:12653250-12653330 1.5e-05 37_[+1]_35 chrIII:5803106-5803186 1.5e-05 35_[+1]_37 chrV:13409228-13409308 1.5e-05 29_[+1]_43 chrII:14857079-14857159 1.5e-05 14_[+1]_58 chrIII:12673521-12673601 1.5e-05 44_[+1]_28 chrIV:1347142-1347222 1.5e-05 9_[+1]_63 chrII:1123346-1123426 1.5e-05 20_[+1]_52 chrIV:6369658-6369738 1.5e-05 22_[+1]_50 chrIII:5068965-5069045 2.7e-05 10_[+1]_62 chrI:4247572-4247652 2.7e-05 34_[+1]_38 chrX:4853170-4853250 2.7e-05 29_[+1]_43 chrII:3482365-3482445 2.7e-05 8_[+1]_64 chrII:6383338-6383418 2.7e-05 17_[+1]_55 chrI:13470415-13470495 2.7e-05 51_[+1]_21 chrX:7569823-7569903 2.7e-05 14_[+1]_58 chrIV:13289505-13289585 2.7e-05 43_[+1]_29 chrIII:11112927-11113007 2.7e-05 57_[+1]_15 chrI:13835174-13835254 2.7e-05 34_[+1]_38 chrV:16022776-16022856 2.7e-05 34_[+1]_38 chrIV:4042403-4042483 2.7e-05 41_[+1]_31 chrI:8664868-8664948 2.7e-05 [+1]_72 chrIV:8019895-8019975 2.7e-05 45_[+1]_27 chrIII:8967810-8967890 2.7e-05 9_[+1]_63 chrV:20090837-20090917 2.7e-05 35_[+1]_37 chrIII:1540267-1540347 2.7e-05 16_[+1]_56 chrI:636784-636864 2.7e-05 46_[+1]_26 chrV:7465707-7465787 4.7e-05 19_[+1]_53 chrI:2097061-2097141 4.7e-05 41_[+1]_31 chrII:6776815-6776895 4.7e-05 40_[+1]_32 chrI:10192873-10192953 4.7e-05 66_[+1]_6 chrIII:11113196-11113276 4.7e-05 13_[+1]_59 chrII:12661875-12661955 4.7e-05 26_[+1]_46 chrIII:4196740-4196820 4.7e-05 13_[+1]_59 chrIII:7199004-7199084 4.7e-05 12_[+1]_60 chrV:7084881-7084961 4.7e-05 32_[+1]_40 chrI:9445805-9445885 4.7e-05 7_[+1]_65 chrV:2127171-2127251 4.7e-05 25_[+1]_47 chrI:11668034-11668114 4.7e-05 65_[+1]_7 chrII:10200906-10200986 4.7e-05 42_[+1]_30 chrI:9393779-9393859 4.7e-05 41_[+1]_31 chrII:4993958-4994038 4.7e-05 43_[+1]_29 chrII:2752712-2752792 4.7e-05 38_[+1]_34 chrIII:9465603-9465683 4.7e-05 29_[+1]_43 chrV:6107615-6107695 4.7e-05 54_[+1]_18 chrV:10736873-10736953 4.7e-05 39_[+1]_33 chrIII:4912468-4912548 4.7e-05 66_[+1]_6 chrIII:8529054-8529134 4.7e-05 37_[+1]_35 chrIII:2582524-2582604 4.7e-05 33_[+1]_39 chrII:11578470-11578550 4.7e-05 59_[+1]_13 chrIII:8683848-8683928 4.7e-05 12_[+1]_60 chrI:5659141-5659221 4.7e-05 3_[+1]_69 chrV:9536691-9536771 4.7e-05 27_[+1]_45 chrIV:17126617-17126697 4.7e-05 44_[+1]_28 chrV:20424929-20425009 4.7e-05 44_[+1]_28 chrII:11464079-11464159 4.7e-05 44_[+1]_28 chrX:16376147-16376227 4.7e-05 23_[+1]_49 chrIV:4171905-4171985 4.7e-05 31_[+1]_41 chrV:10031896-10031976 4.7e-05 62_[+1]_10 chrIV:7816566-7816646 4.7e-05 23_[+1]_49 chrIV:2224810-2224890 4.7e-05 24_[+1]_48 chrIV:3807720-3807800 4.7e-05 38_[+1]_34 chrI:8255146-8255226 4.7e-05 60_[+1]_12 chrI:5118907-5118987 4.7e-05 23_[+1]_49 chrIII:13439567-13439647 4.7e-05 18_[+1]_54 chrV:10441283-10441363 4.7e-05 3_[+1]_69 chrI:3059145-3059225 4.7e-05 16_[+1]_56 chrIV:9797520-9797600 4.7e-05 15_[+1]_57 chrIII:3322762-3322842 4.7e-05 23_[+1]_49 chrIII:12247458-12247538 4.7e-05 36_[+1]_36 chrV:11029448-11029528 6.2e-05 56_[+1]_16 chrIII:10719370-10719450 0.00011 13_[+1]_59 chrII:8039582-8039662 0.00011 38_[+1]_34 chrIV:8973689-8973769 0.00011 52_[+1]_20 chrIII:4999027-4999107 0.00011 24_[+1]_48 chrIV:6631985-6632065 0.00011 21_[+1]_51 chrII:4791431-4791511 0.00011 48_[+1]_24 chrIV:1761785-1761865 0.00011 54_[+1]_18 chrII:10538101-10538181 0.00011 49_[+1]_23 chrIV:16995572-16995652 0.00011 41_[+1]_31 chrII:476161-476241 0.00011 62_[+1]_10 chrII:10395528-10395608 0.00011 41_[+1]_31 chrI:5106142-5106222 0.00011 67_[+1]_5 chrIV:8498877-8498957 0.00011 37_[+1]_35 chrV:10320321-10320401 0.00011 34_[+1]_38 chrII:15089575-15089655 0.00011 43_[+1]_29 chrI:10161986-10162066 0.00011 13_[+1]_59 chrIV:11315032-11315112 0.00011 54_[+1]_18 chrIII:4905491-4905571 0.00011 3_[+1]_69 chrIV:12278674-12278754 0.00011 38_[+1]_34 chrII:12914849-12914929 0.00011 51_[+1]_21 chrIII:11415681-11415761 0.00011 5_[+1]_67 chrI:5281826-5281906 0.00011 16_[+1]_56 chrIV:257300-257380 0.00011 8_[+1]_64 chrIII:11286252-11286332 0.00011 25_[+1]_47 chrI:11222151-11222231 0.00011 35_[+1]_37 chrIV:4712613-4712693 0.00011 18_[+1]_54 chrI:9080114-9080194 0.00011 24_[+1]_48 chrIII:5190356-5190436 0.00011 37_[+1]_35 chrIV:5188202-5188282 0.00011 41_[+1]_31 chrIV:13783690-13783770 0.00015 24_[+1]_48 chrI:14756448-14756528 0.00018 27_[+1]_45 chrV:2603171-2603251 0.00018 42_[+1]_30 chrIV:11592955-11593035 0.00018 48_[+1]_24 chrI:8759889-8759969 0.00019 28_[+1]_44 chrI:3176574-3176654 0.00021 28_[+1]_44 chrII:13117289-13117369 0.00021 27_[+1]_45 chrI:851599-851679 0.00021 53_[+1]_19 chrI:1034341-1034421 0.00021 51_[+1]_21 chrIII:8850807-8850887 0.00021 50_[+1]_22 chrI:3636638-3636718 0.00021 35_[+1]_37 chrV:156219-156299 0.00021 31_[+1]_41 chrV:1060319-1060399 0.00021 60_[+1]_12 chrIV:16422334-16422414 0.00024 26_[+1]_46 chrI:3070205-3070285 0.00028 22_[+1]_50 chrIII:6625448-6625528 0.00028 69_[+1]_3 chrIII:8144750-8144830 0.00028 6_[+1]_66 chrI:96487-96567 0.00028 68_[+1]_4 chrI:2830390-2830470 0.00028 38_[+1]_34 chrIII:4986952-4987032 0.00032 41_[+1]_31 chrII:5819836-5819916 0.00032 63_[+1]_9 chrII:11176624-11176704 0.00035 14_[+1]_58 chrII:9931147-9931227 0.00035 64_[+1]_8 chrIV:813491-813571 0.00035 23_[+1]_49 chrIII:9868277-9868357 0.00042 55_[+1]_17 chrIV:2987098-2987178 0.00042 20_[+1]_52 chrIII:4343281-4343361 0.00053 34_[+1]_38 chrIII:13187924-13188004 0.0006 3_[+1]_69 chrX:10000320-10000400 0.00066 54_[+1]_18 chrII:15197280-15197360 0.00066 55_[+1]_17 chrIV:3803417-3803497 0.00066 66_[+1]_6 chrX:7798523-7798603 0.00066 46_[+1]_26 chrIII:12665756-12665836 0.00073 66_[+1]_6 chrV:10526077-10526157 0.00078 29_[+1]_43 chrIV:5548980-5549060 0.00078 63_[+1]_9 chrIV:6747824-6747904 0.00078 40_[+1]_32 chrI:15013985-15014065 0.00082 29_[+1]_43 chrIV:10242844-10242924 0.00085 70_[+1]_2 chrIII:5722027-5722107 0.0009 29_[+1]_43 chrV:18981151-18981231 0.0009 38_[+1]_34 chrIV:2705777-2705857 0.0009 1_[+1]_71 chrX:1853745-1853825 0.0009 23_[+1]_49 chrII:5511873-5511953 0.0009 54_[+1]_18 chrIV:2706804-2706884 0.0009 15_[+1]_57 chrIII:10720686-10720766 0.0012 27_[+1]_45 chrI:7159316-7159396 0.0013 49_[+1]_23 chrIV:1446337-1446417 0.0013 52_[+1]_20 chrII:8927416-8927496 0.0013 11_[+1]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCDMG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGGCCDMG width=8 seqs=161 chrII:9968484-9968564 ( 39) TGGCCGAG 1 chrIII:783429-783509 ( 47) TGGCCGAG 1 chrIII:5108934-5109014 ( 57) TGGCCGAG 1 chrIV:15526636-15526716 ( 35) CGGCCGAG 1 chrX:3379244-3379324 ( 50) TGGCCGAG 1 chrIII:11290693-11290773 ( 42) TGGCCGAG 1 chrII:6097607-6097687 ( 35) CGGCCGAG 1 chrX:13584999-13585079 ( 27) CGGCCGAG 1 chrIV:16415765-16415845 ( 18) CGGCCGAG 1 chrII:11290553-11290633 ( 12) CGGCCGAG 1 chrII:2451164-2451244 ( 52) CGGCCGAG 1 chrI:6760274-6760354 ( 45) TGGCCGAG 1 chrIII:10064298-10064378 ( 19) TGGCCGAG 1 chrIII:10628079-10628159 ( 40) TGGCCGAG 1 chrIV:12653250-12653330 ( 38) TGGCCGAG 1 chrIII:5803106-5803186 ( 36) CGGCCGAG 1 chrV:13409228-13409308 ( 30) CGGCCGAG 1 chrII:14857079-14857159 ( 15) TGGCCGAG 1 chrIII:12673521-12673601 ( 45) TGGCCGAG 1 chrIV:1347142-1347222 ( 10) CGGCCGAG 1 chrII:1123346-1123426 ( 21) TGGCCGAG 1 chrIV:6369658-6369738 ( 23) CGGCCGAG 1 chrIII:5068965-5069045 ( 11) TGGCCGCG 1 chrI:4247572-4247652 ( 35) CGGCCGCG 1 chrX:4853170-4853250 ( 30) CGGCCGCG 1 chrII:3482365-3482445 ( 9) TGGCCGCG 1 chrII:6383338-6383418 ( 18) TGGCCGCG 1 chrI:13470415-13470495 ( 52) TGGCCGCG 1 chrX:7569823-7569903 ( 15) CGGCCGCG 1 chrIV:13289505-13289585 ( 44) CGGCCGCG 1 chrIII:11112927-11113007 ( 58) CGGCCGCG 1 chrI:13835174-13835254 ( 35) TGGCCGCG 1 chrV:16022776-16022856 ( 35) TGGCCGCG 1 chrIV:4042403-4042483 ( 42) TGGCCGCG 1 chrI:8664868-8664948 ( 1) CGGCCGCG 1 chrIV:8019895-8019975 ( 46) CGGCCGCG 1 chrIII:8967810-8967890 ( 10) TGGCCGCG 1 chrV:20090837-20090917 ( 36) TGGCCGCG 1 chrIII:1540267-1540347 ( 17) TGGCCGCG 1 chrI:636784-636864 ( 47) CGGCCGCG 1 chrV:7465707-7465787 ( 20) TGGCCTAG 1 chrI:2097061-2097141 ( 42) TGGCCTAG 1 chrII:6776815-6776895 ( 41) CGGCCTAG 1 chrI:10192873-10192953 ( 67) TGGCCTAG 1 chrIII:11113196-11113276 ( 14) TGGCCTAG 1 chrII:12661875-12661955 ( 27) TGGCCTAG 1 chrIII:4196740-4196820 ( 14) TGGCCTAG 1 chrIII:7199004-7199084 ( 13) TGGCCTAG 1 chrV:7084881-7084961 ( 33) TGGCCTAG 1 chrI:9445805-9445885 ( 8) TGGCCTAG 1 chrV:2127171-2127251 ( 26) TGGCCTAG 1 chrI:11668034-11668114 ( 66) TGGCCTAG 1 chrII:10200906-10200986 ( 43) TGGCCTAG 1 chrI:9393779-9393859 ( 42) TGGCCTAG 1 chrII:4993958-4994038 ( 44) TGGCCTAG 1 chrII:2752712-2752792 ( 39) TGGCCTAG 1 chrIII:9465603-9465683 ( 30) TGGCCTAG 1 chrV:6107615-6107695 ( 55) TGGCCTAG 1 chrV:10736873-10736953 ( 40) TGGCCTAG 1 chrIII:4912468-4912548 ( 67) TGGCCTAG 1 chrIII:8529054-8529134 ( 38) TGGCCTAG 1 chrIII:2582524-2582604 ( 34) TGGCCTAG 1 chrII:11578470-11578550 ( 60) TGGCCTAG 1 chrIII:8683848-8683928 ( 13) TGGCCTAG 1 chrI:5659141-5659221 ( 4) TGGCCTAG 1 chrV:9536691-9536771 ( 28) TGGCCTAG 1 chrIV:17126617-17126697 ( 45) TGGCCTAG 1 chrV:20424929-20425009 ( 45) TGGCCTAG 1 chrII:11464079-11464159 ( 45) TGGCCTAG 1 chrX:16376147-16376227 ( 24) TGGCCTAG 1 chrIV:4171905-4171985 ( 32) CGGCCTAG 1 chrV:10031896-10031976 ( 63) TGGCCTAG 1 chrIV:7816566-7816646 ( 24) TGGCCTAG 1 chrIV:2224810-2224890 ( 25) TGGCCTAG 1 chrIV:3807720-3807800 ( 39) TGGCCTAG 1 chrI:8255146-8255226 ( 61) TGGCCTAG 1 chrI:5118907-5118987 ( 24) TGGCCTAG 1 chrIII:13439567-13439647 ( 19) TGGCCTAG 1 chrV:10441283-10441363 ( 4) CGGCCTAG 1 chrI:3059145-3059225 ( 17) TGGCCTAG 1 chrIV:9797520-9797600 ( 16) TGGCCTAG 1 chrIII:3322762-3322842 ( 24) TGGCCTAG 1 chrIII:12247458-12247538 ( 37) TGGCCTAG 1 chrV:11029448-11029528 ( 57) CGGCCTCG 1 chrIII:10719370-10719450 ( 14) TGGCCGTG 1 chrII:8039582-8039662 ( 39) CGGCCACG 1 chrIV:8973689-8973769 ( 53) CGGCCGTG 1 chrIII:4999027-4999107 ( 25) CGGCCACG 1 chrIV:6631985-6632065 ( 22) CGGCCGTG 1 chrII:4791431-4791511 ( 49) CGGCCGTG 1 chrIV:1761785-1761865 ( 55) TGGCCGTG 1 chrII:10538101-10538181 ( 50) CGGCCGTG 1 chrIV:16995572-16995652 ( 42) CGGCCACG 1 chrII:476161-476241 ( 63) TGGCCGTG 1 chrII:10395528-10395608 ( 42) CGGCCGTG 1 chrI:5106142-5106222 ( 68) CGGCCGTG 1 chrIV:8498877-8498957 ( 38) CGGCCACG 1 chrV:10320321-10320401 ( 35) CGGCCACG 1 chrII:15089575-15089655 ( 44) CGGCCGTG 1 chrI:10161986-10162066 ( 14) TGGCCGTG 1 chrIV:11315032-11315112 ( 55) CGGCCGTG 1 chrIII:4905491-4905571 ( 4) CGGCCACG 1 chrIV:12278674-12278754 ( 39) CGGCCGTG 1 chrII:12914849-12914929 ( 52) CGGCCGTG 1 chrIII:11415681-11415761 ( 6) TGGCCGTG 1 chrI:5281826-5281906 ( 17) CGGCCACG 1 chrIV:257300-257380 ( 9) CGGCCGTG 1 chrIII:11286252-11286332 ( 26) CGGCCACG 1 chrI:11222151-11222231 ( 36) CGGCCACG 1 chrIV:4712613-4712693 ( 19) CGGCCACG 1 chrI:9080114-9080194 ( 25) CGGCCACG 1 chrIII:5190356-5190436 ( 38) CGGCCGTG 1 chrIV:5188202-5188282 ( 42) CGGCCGTG 1 chrIV:13783690-13783770 ( 25) TGGCCTTG 1 chrI:14756448-14756528 ( 28) CGGCCATG 1 chrV:2603171-2603251 ( 43) CGGCCATG 1 chrIV:11592955-11593035 ( 49) CGGCCATG 1 chrI:8759889-8759969 ( 29) AGGCCTCG 1 chrI:3176574-3176654 ( 29) AGGCCACG 1 chrII:13117289-13117369 ( 28) AGGCCACG 1 chrI:851599-851679 ( 54) AGGCCACG 1 chrI:1034341-1034421 ( 52) AGGCCACG 1 chrIII:8850807-8850887 ( 51) AGGCCACG 1 chrI:3636638-3636718 ( 36) AGGCCACG 1 chrV:156219-156299 ( 32) AGGCCACG 1 chrV:1060319-1060399 ( 61) AGGCCACG 1 chrIV:16422334-16422414 ( 27) CGGCCGCC 1 chrI:3070205-3070285 ( 23) TGTCCGAG 1 chrIII:6625448-6625528 ( 70) AGGCCATG 1 chrIII:8144750-8144830 ( 7) TGTCCGAG 1 chrI:96487-96567 ( 69) AGGCCATG 1 chrI:2830390-2830470 ( 39) AGGCCATG 1 chrIII:4986952-4987032 ( 42) CGTCCGCG 1 chrII:5819836-5819916 ( 64) CGTCCGCG 1 chrII:11176624-11176704 ( 15) TGGACGAG 1 chrII:9931147-9931227 ( 65) TGGACGAG 1 chrIV:813491-813571 ( 24) TGGCCTCC 1 chrIII:9868277-9868357 ( 56) CGGCCACC 1 chrIV:2987098-2987178 ( 21) CGGCCACC 1 chrIII:4343281-4343361 ( 35) TGGACTAG 1 chrIII:13187924-13188004 ( 4) TGTCCACG 1 chrX:10000320-10000400 ( 55) CTGCCGAG 1 chrII:15197280-15197360 ( 56) TTGCCGAG 1 chrIV:3803417-3803497 ( 67) CGGACAAG 1 chrX:7798523-7798603 ( 47) CGGACAAG 1 chrIII:12665756-12665836 ( 67) TGGACGTG 1 chrV:10526077-10526157 ( 30) TGGCCGAT 1 chrIV:5548980-5549060 ( 64) CGGCCATC 1 chrIV:6747824-6747904 ( 41) AGTCCGCG 1 chrI:15013985-15014065 ( 30) AGGACGAG 1 chrIV:10242844-10242924 ( 71) GGGCCTAG 1 chrIII:5722027-5722107 ( 30) AGGCCACC 1 chrV:18981151-18981231 ( 39) AGGCCACC 1 chrIV:2705777-2705857 ( 2) AGGCCACC 1 chrX:1853745-1853825 ( 24) AGGCCACC 1 chrII:5511873-5511953 ( 55) AGGCCACC 1 chrIV:2706804-2706884 ( 16) AGGCCACC 1 chrIII:10720686-10720766 ( 28) TTGCCACG 1 chrI:7159316-7159396 ( 50) AGTCCGTG 1 chrIV:1446337-1446417 ( 53) AGTCCACG 1 chrII:8927416-8927496 ( 12) TGGCCGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCDMG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.76703 E= 2.0e-152 -105 74 -515 82 -1397 -1397 216 -391 -1397 -1397 211 -250 -270 214 -1397 -1397 -1397 221 -1397 -1397 -22 -1397 104 12 76 66 -1397 -64 -1397 -166 206 -450 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCDMG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 161 E= 2.0e-152 0.136646 0.360248 0.006211 0.496894 0.000000 0.000000 0.981366 0.018634 0.000000 0.000000 0.950311 0.049689 0.043478 0.956522 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.242236 0.000000 0.453416 0.304348 0.478261 0.341615 0.000000 0.180124 0.000000 0.068323 0.919255 0.012422 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCDMG MEME-1 regular expression -------------------------------------------------------------------------------- [TC]GGCC[GTA][AC]G -------------------------------------------------------------------------------- Time 5.01 secs. ******************************************************************************** ******************************************************************************** MOTIF CTMGGCCA MEME-2 width = 8 sites = 80 llr = 696 E-value = 6.1e-067 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :14::1:8 pos.-specific C 9:6::9a: probability G :::a9::2 matrix T 19::1::: bits 2.2 * * 2.0 * * 1.8 * * * 1.5 * ** * Relative 1.3 ** **** Entropy 1.1 ******** (12.5 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCGGCCA consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:10719370-10719450 33 8.35e-06 GAAGAGAAAA CTCGGCCA CCTATTTTTA chrI:15013985-15014065 21 8.35e-06 ATTTCGCGCG CTCGGCCA GAGGACGAGT chrII:6097607-6097687 67 8.35e-06 GAGGGCATTC CTCGGCCA TATTAC chrIV:16422334-16422414 10 8.35e-06 ATAGAAATC CTCGGCCA CCGGTCCCCC chrIII:11112927-11113007 50 8.35e-06 ttgtcggatc ctcggcca cggccgcgaa chrIII:8529054-8529134 58 8.35e-06 TTCTCTTTTA CTCGGCCA TGGCATACAT chrV:10320321-10320401 49 8.35e-06 CACGCGTTCT CTCGGCCA TGTACTCCTC chrIV:13783690-13783770 45 8.35e-06 CGAAAAACTT CTCGGCCA TGAACATGTG chrIII:11415681-11415761 23 8.35e-06 GAAAAAAAAA CTCGGCCA TCGAAATTGT chrIV:4712613-4712693 31 8.35e-06 GCCACGAAAA CTCGGCCA TTTTGCATTT chrII:14857079-14857159 58 8.35e-06 TCGCACACTT CTCGGCCA ttttttctat chrIV:8019895-8019975 63 8.35e-06 GCTGAGATTT CTCGGCCA CAGTATCGCA chrIII:12673521-12673601 60 8.35e-06 GAGACCCCGA CTCGGCCA GGCAAGtttt chrIII:8967810-8967890 39 8.35e-06 GGCTGGAGTT CTCGGCCA TAATGATATT chrIV:3807720-3807800 64 8.35e-06 GAGGGGAAAA CTCGGCCA CGTGGGGAC chrV:20090837-20090917 67 8.35e-06 CAATTCTTTT CTCGGCCA TCTTCC chrII:1123346-1123426 60 8.35e-06 TGACTTTAGA CTCGGCCA CCACGATTTT chrI:4247572-4247652 25 1.92e-05 TAGTTACTTC CTAGGCCA CGCGGCCGCG chrI:851599-851679 32 1.92e-05 AAAGGAAAAT CTAGGCCA CCCACAAAAA chrIII:12273753-12273833 53 1.92e-05 GTTGTGGTTT CTAGGCCA GGGGTTTTGT chrII:12661875-12661955 60 1.92e-05 CCACTGTTTT CTAGGCCA TCAGTCCACA chrIII:8144750-8144830 58 1.92e-05 GTTCTCAAAT CTAGGCCA TCTCAGTTTT chrI:9445805-9445885 24 1.92e-05 AGAAATTATT CTAGGCCA GTTGAGAGGA chrX:13584999-13585079 51 1.92e-05 CGCGCACCTG CTAGGCCA CGTTTTGTTT chrII:2752712-2752792 57 1.92e-05 CAGTGGAAAC CTAGGCCA CTGAAGGCGA chrIII:9465603-9465683 58 1.92e-05 TCAGCATTTT CTAGGCCA TTTCGGAGAT chrII:15089575-15089655 34 1.92e-05 CATTTGGTTC CTAGGCCA CGCGGCCGTG chrIII:10628079-10628159 60 1.92e-05 TTTGTTTTTT CTAGGCCA CCGAAAAATA chrI:5659141-5659221 32 1.92e-05 TTGTCGGTTC CTAGGCCA CCACCTCGTT chrIV:12653250-12653330 66 1.92e-05 ACGCCAGATC CTAGGCCA CTCGATA chrI:8511444-8511524 13 1.92e-05 ACGGAGAAAG CTAGGCCA TAAGTGGGAT chrV:16022776-16022856 58 1.92e-05 AGTGACGCCG CTAGGCCA TTTGGCGAAA chrIV:9777704-9777784 26 1.92e-05 ATGGAGTTTT CTAGGCCA CATGAACACA chrIV:2224810-2224890 44 1.92e-05 TTTTAGATTT CTAGGCCA CCAAAAAACT chrII:5511873-5511953 39 1.92e-05 GCTTGGGTTT CTAGGCCA TACTTTCTAG chrIV:2705554-2705634 72 1.92e-05 TTTTGGATTT CTAGGCCA C chrI:5118907-5118987 63 1.92e-05 CATCAGAAAA CTAGGCCA TTTTTTCACA chrIV:9797520-9797600 44 1.92e-05 AAGGAGACTT CTAGGCCA TATTTGATGA chrII:4791431-4791511 40 2.58e-05 TAACATCCGA CTCGGCCG CCGGCCGTGT chrV:7084881-7084961 49 2.58e-05 AGAAACCAAC CTCGGCCG CACTGCGCCG chrIII:4912468-4912548 59 2.58e-05 CATTCGGATT CTCGGCCG TGGCCTAGAA chrV:15082458-15082538 45 3.43e-05 TTGTCGGATT CTAGGCCG CATGCGCAGA chrIII:7199004-7199084 41 4.26e-05 TGTGCGCGGC CACGGCCA CTGTTGGCGG chrI:8664868-8664948 24 4.26e-05 AATTATTCGG CACGGCCA TATGATCATC chrIV:6631985-6632065 73 6.42e-05 GTGTACTCCA CTCGGACA chrI:7159316-7159396 65 6.42e-05 GTGTACTCCA CTCGGACA ACATTGTT chrV:16537937-16538017 6 6.42e-05 AATTT CTCGTCCA CAGCCAAAAC chrIII:10064298-10064378 61 6.42e-05 GTGTACTCCA CTCGGACA ACATTTTCTT chrV:13551779-13551859 66 6.42e-05 GTGTACTCCT CTCGGACA ACTTTTA chrII:12914849-12914929 67 6.42e-05 GTGTACTCCA CTCGGACA ATCATT chrV:2603171-2603251 35 6.42e-05 CCCGCACTTC CTCGTCCA CGGCCATGCG chrV:156219-156299 55 6.42e-05 GTGTACTCCT CTCGGACA AACAAACAAA chrIV:5188202-5188282 57 6.42e-05 GTGTACTCCA CTCGGACA ATGAAGTAAT chrI:13835174-13835254 55 7.51e-05 CGCCATTTTC CAAGGCCA CCGGGGCTTA chrII:4993958-4994038 36 1.03e-04 TTGGAAATTC CTAGTCCA TGGCCTAGAA chrI:11222151-11222231 28 1.03e-04 TACACGAAAC CTAGTCCA CGGCCACGCG chrI:636784-636864 39 1.03e-04 CGTTCCCCTC CTAGTCCA CGGCCGCGCA chrI:10192873-10192953 59 1.21e-04 TCGTGTACGA CACGGCCG TGGCCTAGAA chrI:13470415-13470495 24 1.21e-04 GAGAGGACTA CACGGCCG GTGGCCTTGG chrIII:4343281-4343361 26 1.21e-04 ACGAGGAGTA CACGGCCG ATGGACTAGG chrII:5819836-5819916 17 1.21e-04 TCGTGTTGTT CACGGCCG AAGTTTTTCA chrV:10031896-10031976 53 1.21e-04 GAGTGGAGTA CACGGCCG TGTGGCCTAG chrIII:5722027-5722107 52 1.38e-04 GTGTACTCCT CTCGGACG GGCGATGCCA chrII:6776815-6776895 71 1.38e-04 GCGTACTCCT CTCGGACG AT chrX:7798523-7798603 21 1.48e-04 GAGGGGGAAA CTCGGTCA TGTCGCCCGT chrI:14756448-14756528 20 1.48e-04 CAGGTGAAAC CTCGGTCA CGGCCATGCC chrV:10526077-10526157 45 1.63e-04 GATAAAAAAG TTAGGCCA TCCTTTCTCA chrI:2776222-2776302 52 1.63e-04 CAGGCGGATT TTAGGCCA CAGCCACTGG chrIV:3803417-3803497 40 1.63e-04 CCGGAGATTT TTAGGCCA CACGACCGTG chrII:11464079-11464159 37 1.63e-04 CTAGAACATG TTAGGCCA TGGCCTAGAA chrII:3482365-3482445 31 1.80e-04 AAGAACCCCC GTCGGCCA TGTGGTGCAA chrI:9080114-9080194 45 1.80e-04 CACCGCAATT GTCGGCCA ACTCTCTGCA chrIV:8973689-8973769 43 2.02e-04 TTGGGGAATC CTAGTCCG CGCGGCCGTG chrIII:9868277-9868357 48 2.02e-04 GTAAAAACCT CTAGTCCG CGGCCACCGG chrX:2857568-2857648 59 2.02e-04 TATGGGTTTT CTAGTCCG CCTGTCCTCA chrIV:11592955-11593035 41 2.02e-04 CTAGAAAATG CTAGTCCG CGGCCATGAC chrIII:13187924-13188004 34 2.22e-04 TTGTCGGTTT CTAGGTCA CCACCCGTGT chrIV:12278674-12278754 18 2.22e-04 TTAAAAGAGT CTCGGCCC GAACAACTTT chrIII:8850807-8850887 30 2.31e-04 GATGCAAGTG TTCGGCCG TCGTGGAAAT chrII:11176624-11176704 46 2.63e-04 CCAGACCTTT CACGTCCA TTTTCTCACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:10719370-10719450 8.3e-06 32_[+2]_40 chrI:15013985-15014065 8.3e-06 20_[+2]_52 chrII:6097607-6097687 8.3e-06 66_[+2]_6 chrIV:16422334-16422414 8.3e-06 9_[+2]_63 chrIII:11112927-11113007 8.3e-06 49_[+2]_23 chrIII:8529054-8529134 8.3e-06 57_[+2]_15 chrV:10320321-10320401 8.3e-06 48_[+2]_24 chrIV:13783690-13783770 8.3e-06 44_[+2]_28 chrIII:11415681-11415761 8.3e-06 22_[+2]_50 chrIV:4712613-4712693 8.3e-06 30_[+2]_42 chrII:14857079-14857159 8.3e-06 57_[+2]_15 chrIV:8019895-8019975 8.3e-06 62_[+2]_10 chrIII:12673521-12673601 8.3e-06 59_[+2]_13 chrIII:8967810-8967890 8.3e-06 38_[+2]_34 chrIV:3807720-3807800 8.3e-06 63_[+2]_9 chrV:20090837-20090917 8.3e-06 66_[+2]_6 chrII:1123346-1123426 8.3e-06 59_[+2]_13 chrI:4247572-4247652 1.9e-05 24_[+2]_48 chrI:851599-851679 1.9e-05 31_[+2]_41 chrIII:12273753-12273833 1.9e-05 52_[+2]_20 chrII:12661875-12661955 1.9e-05 59_[+2]_13 chrIII:8144750-8144830 1.9e-05 57_[+2]_15 chrI:9445805-9445885 1.9e-05 23_[+2]_49 chrX:13584999-13585079 1.9e-05 50_[+2]_22 chrII:2752712-2752792 1.9e-05 56_[+2]_16 chrIII:9465603-9465683 1.9e-05 57_[+2]_15 chrII:15089575-15089655 1.9e-05 33_[+2]_39 chrIII:10628079-10628159 1.9e-05 59_[+2]_13 chrI:5659141-5659221 1.9e-05 31_[+2]_41 chrIV:12653250-12653330 1.9e-05 65_[+2]_7 chrI:8511444-8511524 1.9e-05 12_[+2]_60 chrV:16022776-16022856 1.9e-05 57_[+2]_15 chrIV:9777704-9777784 1.9e-05 25_[+2]_47 chrIV:2224810-2224890 1.9e-05 43_[+2]_29 chrII:5511873-5511953 1.9e-05 38_[+2]_34 chrIV:2705554-2705634 1.9e-05 71_[+2]_1 chrI:5118907-5118987 1.9e-05 62_[+2]_10 chrIV:9797520-9797600 1.9e-05 43_[+2]_29 chrII:4791431-4791511 2.6e-05 39_[+2]_33 chrV:7084881-7084961 2.6e-05 48_[+2]_24 chrIII:4912468-4912548 2.6e-05 58_[+2]_14 chrV:15082458-15082538 3.4e-05 44_[+2]_28 chrIII:7199004-7199084 4.3e-05 40_[+2]_32 chrI:8664868-8664948 4.3e-05 23_[+2]_49 chrIV:6631985-6632065 6.4e-05 72_[+2] chrI:7159316-7159396 6.4e-05 64_[+2]_8 chrV:16537937-16538017 6.4e-05 5_[+2]_67 chrIII:10064298-10064378 6.4e-05 60_[+2]_12 chrV:13551779-13551859 6.4e-05 65_[+2]_7 chrII:12914849-12914929 6.4e-05 66_[+2]_6 chrV:2603171-2603251 6.4e-05 34_[+2]_38 chrV:156219-156299 6.4e-05 54_[+2]_18 chrIV:5188202-5188282 6.4e-05 56_[+2]_16 chrI:13835174-13835254 7.5e-05 54_[+2]_18 chrII:4993958-4994038 0.0001 35_[+2]_37 chrI:11222151-11222231 0.0001 27_[+2]_45 chrI:636784-636864 0.0001 38_[+2]_34 chrI:10192873-10192953 0.00012 58_[+2]_14 chrI:13470415-13470495 0.00012 23_[+2]_49 chrIII:4343281-4343361 0.00012 25_[+2]_47 chrII:5819836-5819916 0.00012 16_[+2]_56 chrV:10031896-10031976 0.00012 52_[+2]_20 chrIII:5722027-5722107 0.00014 51_[+2]_21 chrII:6776815-6776895 0.00014 70_[+2]_2 chrX:7798523-7798603 0.00015 20_[+2]_52 chrI:14756448-14756528 0.00015 19_[+2]_53 chrV:10526077-10526157 0.00016 44_[+2]_28 chrI:2776222-2776302 0.00016 51_[+2]_21 chrIV:3803417-3803497 0.00016 39_[+2]_33 chrII:11464079-11464159 0.00016 36_[+2]_36 chrII:3482365-3482445 0.00018 30_[+2]_42 chrI:9080114-9080194 0.00018 44_[+2]_28 chrIV:8973689-8973769 0.0002 42_[+2]_30 chrIII:9868277-9868357 0.0002 47_[+2]_25 chrX:2857568-2857648 0.0002 58_[+2]_14 chrIV:11592955-11593035 0.0002 40_[+2]_32 chrIII:13187924-13188004 0.00022 33_[+2]_39 chrIV:12278674-12278754 0.00022 17_[+2]_55 chrIII:8850807-8850887 0.00023 29_[+2]_43 chrII:11176624-11176704 0.00026 45_[+2]_27 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTMGGCCA width=8 seqs=80 chrIII:10719370-10719450 ( 33) CTCGGCCA 1 chrI:15013985-15014065 ( 21) CTCGGCCA 1 chrII:6097607-6097687 ( 67) CTCGGCCA 1 chrIV:16422334-16422414 ( 10) CTCGGCCA 1 chrIII:11112927-11113007 ( 50) CTCGGCCA 1 chrIII:8529054-8529134 ( 58) CTCGGCCA 1 chrV:10320321-10320401 ( 49) CTCGGCCA 1 chrIV:13783690-13783770 ( 45) CTCGGCCA 1 chrIII:11415681-11415761 ( 23) CTCGGCCA 1 chrIV:4712613-4712693 ( 31) CTCGGCCA 1 chrII:14857079-14857159 ( 58) CTCGGCCA 1 chrIV:8019895-8019975 ( 63) CTCGGCCA 1 chrIII:12673521-12673601 ( 60) CTCGGCCA 1 chrIII:8967810-8967890 ( 39) CTCGGCCA 1 chrIV:3807720-3807800 ( 64) CTCGGCCA 1 chrV:20090837-20090917 ( 67) CTCGGCCA 1 chrII:1123346-1123426 ( 60) CTCGGCCA 1 chrI:4247572-4247652 ( 25) CTAGGCCA 1 chrI:851599-851679 ( 32) CTAGGCCA 1 chrIII:12273753-12273833 ( 53) CTAGGCCA 1 chrII:12661875-12661955 ( 60) CTAGGCCA 1 chrIII:8144750-8144830 ( 58) CTAGGCCA 1 chrI:9445805-9445885 ( 24) CTAGGCCA 1 chrX:13584999-13585079 ( 51) CTAGGCCA 1 chrII:2752712-2752792 ( 57) CTAGGCCA 1 chrIII:9465603-9465683 ( 58) CTAGGCCA 1 chrII:15089575-15089655 ( 34) CTAGGCCA 1 chrIII:10628079-10628159 ( 60) CTAGGCCA 1 chrI:5659141-5659221 ( 32) CTAGGCCA 1 chrIV:12653250-12653330 ( 66) CTAGGCCA 1 chrI:8511444-8511524 ( 13) CTAGGCCA 1 chrV:16022776-16022856 ( 58) CTAGGCCA 1 chrIV:9777704-9777784 ( 26) CTAGGCCA 1 chrIV:2224810-2224890 ( 44) CTAGGCCA 1 chrII:5511873-5511953 ( 39) CTAGGCCA 1 chrIV:2705554-2705634 ( 72) CTAGGCCA 1 chrI:5118907-5118987 ( 63) CTAGGCCA 1 chrIV:9797520-9797600 ( 44) CTAGGCCA 1 chrII:4791431-4791511 ( 40) CTCGGCCG 1 chrV:7084881-7084961 ( 49) CTCGGCCG 1 chrIII:4912468-4912548 ( 59) CTCGGCCG 1 chrV:15082458-15082538 ( 45) CTAGGCCG 1 chrIII:7199004-7199084 ( 41) CACGGCCA 1 chrI:8664868-8664948 ( 24) CACGGCCA 1 chrIV:6631985-6632065 ( 73) CTCGGACA 1 chrI:7159316-7159396 ( 65) CTCGGACA 1 chrV:16537937-16538017 ( 6) CTCGTCCA 1 chrIII:10064298-10064378 ( 61) CTCGGACA 1 chrV:13551779-13551859 ( 66) CTCGGACA 1 chrII:12914849-12914929 ( 67) CTCGGACA 1 chrV:2603171-2603251 ( 35) CTCGTCCA 1 chrV:156219-156299 ( 55) CTCGGACA 1 chrIV:5188202-5188282 ( 57) CTCGGACA 1 chrI:13835174-13835254 ( 55) CAAGGCCA 1 chrII:4993958-4994038 ( 36) CTAGTCCA 1 chrI:11222151-11222231 ( 28) CTAGTCCA 1 chrI:636784-636864 ( 39) CTAGTCCA 1 chrI:10192873-10192953 ( 59) CACGGCCG 1 chrI:13470415-13470495 ( 24) CACGGCCG 1 chrIII:4343281-4343361 ( 26) CACGGCCG 1 chrII:5819836-5819916 ( 17) CACGGCCG 1 chrV:10031896-10031976 ( 53) CACGGCCG 1 chrIII:5722027-5722107 ( 52) CTCGGACG 1 chrII:6776815-6776895 ( 71) CTCGGACG 1 chrX:7798523-7798603 ( 21) CTCGGTCA 1 chrI:14756448-14756528 ( 20) CTCGGTCA 1 chrV:10526077-10526157 ( 45) TTAGGCCA 1 chrI:2776222-2776302 ( 52) TTAGGCCA 1 chrIV:3803417-3803497 ( 40) TTAGGCCA 1 chrII:11464079-11464159 ( 37) TTAGGCCA 1 chrII:3482365-3482445 ( 31) GTCGGCCA 1 chrI:9080114-9080194 ( 45) GTCGGCCA 1 chrIV:8973689-8973769 ( 43) CTAGTCCG 1 chrIII:9868277-9868357 ( 48) CTAGTCCG 1 chrX:2857568-2857648 ( 59) CTAGTCCG 1 chrIV:11592955-11593035 ( 41) CTAGTCCG 1 chrIII:13187924-13188004 ( 34) CTAGGTCA 1 chrIV:12278674-12278754 ( 18) CTCGGCCC 1 chrIII:8850807-8850887 ( 30) TTCGGCCG 1 chrII:11176624-11176704 ( 46) CACGTCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.30533 E= 6.1e-067 -1297 208 -314 -217 -133 -1297 -1297 166 63 138 -1297 -1297 -1297 -1297 218 -1297 -1297 -1297 199 -117 -133 197 -1297 -290 -1297 221 -1297 -1297 148 -411 -14 -1297 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 80 E= 6.1e-067 0.000000 0.912500 0.025000 0.062500 0.112500 0.000000 0.000000 0.887500 0.437500 0.562500 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.875000 0.125000 0.112500 0.850000 0.000000 0.037500 0.000000 1.000000 0.000000 0.000000 0.787500 0.012500 0.200000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 regular expression -------------------------------------------------------------------------------- CT[CA]GGCC[AG] -------------------------------------------------------------------------------- Time 8.32 secs. ******************************************************************************** ******************************************************************************** MOTIF GWGGASTA MEME-3 width = 8 sites = 51 llr = 428 E-value = 5.6e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif GWGGASTA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :4::7:1a pos.-specific C ::::36:: probability G a:aa:42: matrix T :5::::7: bits 2.2 * ** 2.0 * ** 1.8 * ** * 1.5 * ** * Relative 1.3 * ** * * Entropy 1.1 * **** * (12.1 bits) 0.9 * ****** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGGACTA consensus A CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGGASTA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:11029448-11029528 27 1.44e-05 TACACTAGTG GTGGACTA ACTATCCCAT chrI:9393779-9393859 24 1.44e-05 GATAGTCCGC GTGGACTA CACGACATGC chrI:6760274-6760354 28 1.44e-05 AAGGCACCTC GTGGACTA GTTTCCACAT chrI:10161986-10162066 66 1.44e-05 TGTACTCCTC GTGGACTA ATCCATT chrIV:15526636-15526716 25 2.89e-05 GTTTGTCCGA GAGGACTA CACGGCCGAG chrI:13470415-13470495 16 2.89e-05 AGTTATCCGA GAGGACTA CACGGCCGGT chrIV:13263037-13263117 42 2.89e-05 TCTTCTCCGA GAGGACTA CGCGACCGAG chrIV:11315032-11315112 21 2.89e-05 AATTGTTCAC GAGGACTA CACGCAACAT chrIII:8700710-8700790 24 2.89e-05 TTTTTAGCAC GAGGACTA ACTTCGCTGG chrX:3379244-3379324 15 4.36e-05 ATCACTCCGA GTGGAGTA CGTGCGCGAT chrIV:12278674-12278754 69 4.36e-05 AGAACTGACA GTGGAGTA ATTT chrV:10031896-10031976 45 4.36e-05 AATTGTCCGA GTGGAGTA CACGGCCGTG chrIV:7816566-7816646 6 4.36e-05 TCCGA GTGGAGTA CACCACCGTG chrIII:783429-783509 73 5.47e-05 TTCCGGCCGC GTGGCCTA chrI:2097061-2097141 21 5.47e-05 CAAGAAGCTG GTGGCCTA GAACTCGAAA chrII:4791431-4791511 24 5.47e-05 ACCGCGCACT GTGGCCTA ACATCCGACT chrIV:13289505-13289585 27 5.47e-05 GGTTTGAACG GTGGCCTA GAATCTGCAC chrIII:2582524-2582604 52 5.47e-05 GAATCGTGTG GTGGCCTA GGATTCATTT chrIII:10064298-10064378 33 5.47e-05 CGAGGTGGCC GTGGCCTA GAAGTGGCGC chrIII:10628079-10628159 22 5.47e-05 TGATTCACTT GTGGCCTA GGAAACACGA chrIII:5803106-5803186 21 5.47e-05 TGTGGCCGCG GTGGCCTA GTTTTCACGG chrI:636784-636864 20 5.47e-05 aAACATGGCC GTGGCCTA GCGTTCCCCT chrIII:12247458-12247538 55 5.47e-05 AAATCGTGTG GTGGCCTA GGATTCATTC chrV:15082458-15082538 22 6.95e-05 AATTGTCTAG GAGGAGTA CACGGTTGTC chrII:10538101-10538181 22 6.95e-05 CATTATCCGA GAGGAGTA CATGGCCGAT chrIII:11290693-11290773 25 6.95e-05 CCTTGTCCGA GAGGAGTA CACACCGGGT chrII:6097607-6097687 25 6.95e-05 AGTTTCCCTG GAGGAGTA CACGGCCGAG chrIV:1446337-1446417 27 6.95e-05 GAATTCCCAC GAGGAGTA CACGCCGTTT chrIV:16415765-16415845 8 6.95e-05 TGTCCGA GAGGAGTA CACGGCCGAG chrII:11290553-11290633 2 6.95e-05 G GAGGAGTA CACGGCCGAG chrIII:4912468-4912548 36 6.95e-05 TCTTGTCCGA GAGGAGTA CACGACATTC chrIII:4343281-4343361 18 6.95e-05 GTTTGTTCAC GAGGAGTA CACGGCCGAT chrV:13409228-13409308 20 6.95e-05 AATTGTCCGA GAGGAGTA CACGGCCGAG chrII:5511873-5511953 15 6.95e-05 GTTTTTCCTC GAGGAGTA CACAACGCTT chrIII:12673521-12673601 27 6.95e-05 GTTTGTCCTA GAGGAGTA CACGGCGTGG chrIV:6369658-6369738 13 6.95e-05 AATTGTCCGA GAGGAGTA CACGGCCGAG chrIII:13187924-13188004 59 1.14e-04 TGTACTACAC GTGGACGA TGTGTCCTTA chrV:13657014-13657094 39 1.26e-04 GAGTTGTCAC GAGGACGA AGAGTATTGA chrII:10200906-10200986 29 1.46e-04 GTCGGCTCTG GTGGCCGA TGGCCGTGGC chrV:10736873-10736953 59 1.46e-04 AACCTTTCCC GTGGCCGA CATTATTCTG chrV:9536691-9536771 8 1.46e-04 GCAGTTG GTGGCCGA ATCACCCAAA chrIV:4171905-4171985 48 1.46e-04 AGAAACCTCC GTGGCCGA ACAACAAGCG chrV:1060319-1060399 36 1.46e-04 GCTATTCTTG GTGGCCGA ACTTTTTCGC chrV:6433731-6433811 16 1.81e-04 CGGAGAAAGT GTGGACAA TCGGACATTA chrV:20416779-20416859 52 1.90e-04 CAAAAGCCTG GTGGCGGA AATTCTGTGT chrI:4247572-4247652 51 2.15e-04 CGTACTCCTC GAGGACAA AATGAGTTGC chrV:18981151-18981231 17 2.15e-04 AAATGAGCCT GGGGACTA GTTCAGAGTT chrI:2830390-2830470 17 2.15e-04 AAGAAAAAAG GGGGACTA GGTCCGCGGA chrIII:4999027-4999107 13 2.39e-04 TTTCAGCCGT GTGGAGAA TCCTCGGCCA chrIII:12273753-12273833 10 2.39e-04 AGAGAGAGT GTGGAGAA CGAGGAGAGC chrIII:4986952-4987032 4 2.76e-04 AAA GAGGAGAA ATGGCCGATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGGASTA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:11029448-11029528 1.4e-05 26_[+3]_46 chrI:9393779-9393859 1.4e-05 23_[+3]_49 chrI:6760274-6760354 1.4e-05 27_[+3]_45 chrI:10161986-10162066 1.4e-05 65_[+3]_7 chrIV:15526636-15526716 2.9e-05 24_[+3]_48 chrI:13470415-13470495 2.9e-05 15_[+3]_57 chrIV:13263037-13263117 2.9e-05 41_[+3]_31 chrIV:11315032-11315112 2.9e-05 20_[+3]_52 chrIII:8700710-8700790 2.9e-05 23_[+3]_49 chrX:3379244-3379324 4.4e-05 14_[+3]_58 chrIV:12278674-12278754 4.4e-05 68_[+3]_4 chrV:10031896-10031976 4.4e-05 44_[+3]_28 chrIV:7816566-7816646 4.4e-05 5_[+3]_67 chrIII:783429-783509 5.5e-05 72_[+3] chrI:2097061-2097141 5.5e-05 20_[+3]_52 chrII:4791431-4791511 5.5e-05 23_[+3]_49 chrIV:13289505-13289585 5.5e-05 26_[+3]_46 chrIII:2582524-2582604 5.5e-05 51_[+3]_21 chrIII:10064298-10064378 5.5e-05 32_[+3]_40 chrIII:10628079-10628159 5.5e-05 21_[+3]_51 chrIII:5803106-5803186 5.5e-05 20_[+3]_52 chrI:636784-636864 5.5e-05 19_[+3]_53 chrIII:12247458-12247538 5.5e-05 54_[+3]_18 chrV:15082458-15082538 6.9e-05 21_[+3]_51 chrII:10538101-10538181 6.9e-05 21_[+3]_51 chrIII:11290693-11290773 6.9e-05 24_[+3]_48 chrII:6097607-6097687 6.9e-05 24_[+3]_48 chrIV:1446337-1446417 6.9e-05 26_[+3]_46 chrIV:16415765-16415845 6.9e-05 7_[+3]_65 chrII:11290553-11290633 6.9e-05 1_[+3]_71 chrIII:4912468-4912548 6.9e-05 35_[+3]_37 chrIII:4343281-4343361 6.9e-05 17_[+3]_55 chrV:13409228-13409308 6.9e-05 19_[+3]_53 chrII:5511873-5511953 6.9e-05 14_[+3]_58 chrIII:12673521-12673601 6.9e-05 26_[+3]_46 chrIV:6369658-6369738 6.9e-05 12_[+3]_60 chrIII:13187924-13188004 0.00011 58_[+3]_14 chrV:13657014-13657094 0.00013 38_[+3]_34 chrII:10200906-10200986 0.00015 28_[+3]_44 chrV:10736873-10736953 0.00015 58_[+3]_14 chrV:9536691-9536771 0.00015 7_[+3]_65 chrIV:4171905-4171985 0.00015 47_[+3]_25 chrV:1060319-1060399 0.00015 35_[+3]_37 chrV:6433731-6433811 0.00018 15_[+3]_57 chrV:20416779-20416859 0.00019 51_[+3]_21 chrI:4247572-4247652 0.00022 50_[+3]_22 chrV:18981151-18981231 0.00022 16_[+3]_56 chrI:2830390-2830470 0.00022 16_[+3]_56 chrIII:4999027-4999107 0.00024 12_[+3]_60 chrIII:12273753-12273833 0.00024 9_[+3]_63 chrIII:4986952-4987032 0.00028 3_[+3]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGGASTA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GWGGASTA width=8 seqs=51 chrV:11029448-11029528 ( 27) GTGGACTA 1 chrI:9393779-9393859 ( 24) GTGGACTA 1 chrI:6760274-6760354 ( 28) GTGGACTA 1 chrI:10161986-10162066 ( 66) GTGGACTA 1 chrIV:15526636-15526716 ( 25) GAGGACTA 1 chrI:13470415-13470495 ( 16) GAGGACTA 1 chrIV:13263037-13263117 ( 42) GAGGACTA 1 chrIV:11315032-11315112 ( 21) GAGGACTA 1 chrIII:8700710-8700790 ( 24) GAGGACTA 1 chrX:3379244-3379324 ( 15) GTGGAGTA 1 chrIV:12278674-12278754 ( 69) GTGGAGTA 1 chrV:10031896-10031976 ( 45) GTGGAGTA 1 chrIV:7816566-7816646 ( 6) GTGGAGTA 1 chrIII:783429-783509 ( 73) GTGGCCTA 1 chrI:2097061-2097141 ( 21) GTGGCCTA 1 chrII:4791431-4791511 ( 24) GTGGCCTA 1 chrIV:13289505-13289585 ( 27) GTGGCCTA 1 chrIII:2582524-2582604 ( 52) GTGGCCTA 1 chrIII:10064298-10064378 ( 33) GTGGCCTA 1 chrIII:10628079-10628159 ( 22) GTGGCCTA 1 chrIII:5803106-5803186 ( 21) GTGGCCTA 1 chrI:636784-636864 ( 20) GTGGCCTA 1 chrIII:12247458-12247538 ( 55) GTGGCCTA 1 chrV:15082458-15082538 ( 22) GAGGAGTA 1 chrII:10538101-10538181 ( 22) GAGGAGTA 1 chrIII:11290693-11290773 ( 25) GAGGAGTA 1 chrII:6097607-6097687 ( 25) GAGGAGTA 1 chrIV:1446337-1446417 ( 27) GAGGAGTA 1 chrIV:16415765-16415845 ( 8) GAGGAGTA 1 chrII:11290553-11290633 ( 2) GAGGAGTA 1 chrIII:4912468-4912548 ( 36) GAGGAGTA 1 chrIII:4343281-4343361 ( 18) GAGGAGTA 1 chrV:13409228-13409308 ( 20) GAGGAGTA 1 chrII:5511873-5511953 ( 15) GAGGAGTA 1 chrIII:12673521-12673601 ( 27) GAGGAGTA 1 chrIV:6369658-6369738 ( 13) GAGGAGTA 1 chrIII:13187924-13188004 ( 59) GTGGACGA 1 chrV:13657014-13657094 ( 39) GAGGACGA 1 chrII:10200906-10200986 ( 29) GTGGCCGA 1 chrV:10736873-10736953 ( 59) GTGGCCGA 1 chrV:9536691-9536771 ( 8) GTGGCCGA 1 chrIV:4171905-4171985 ( 48) GTGGCCGA 1 chrV:1060319-1060399 ( 36) GTGGCCGA 1 chrV:6433731-6433811 ( 16) GTGGACAA 1 chrV:20416779-20416859 ( 52) GTGGCGGA 1 chrI:4247572-4247652 ( 51) GAGGACAA 1 chrV:18981151-18981231 ( 17) GGGGACTA 1 chrI:2830390-2830470 ( 17) GGGGACTA 1 chrIII:4999027-4999107 ( 13) GTGGAGAA 1 chrIII:12273753-12273833 ( 10) GTGGAGAA 1 chrIII:4986952-4987032 ( 4) GAGGAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGGASTA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.99089 E= 5.6e-019 -1232 -1232 218 -1232 54 -1232 -249 97 -1232 -1232 218 -1232 -1232 -1232 218 -1232 128 54 -1232 -1232 -1232 144 90 -1232 -153 -1232 -49 141 182 -1232 -1232 -1232 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGGASTA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 51 E= 5.6e-019 0.000000 0.000000 1.000000 0.000000 0.411765 0.000000 0.039216 0.549020 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.686275 0.313725 0.000000 0.000000 0.000000 0.588235 0.411765 0.000000 0.098039 0.000000 0.156863 0.745098 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGGASTA MEME-3 regular expression -------------------------------------------------------------------------------- G[TA]GG[AC][CG]TA -------------------------------------------------------------------------------- Time 11.56 secs. ******************************************************************************** ******************************************************************************** MOTIF TASTCCTC MEME-4 width = 8 sites = 23 llr = 232 E-value = 1.2e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif TASTCCTC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :8:::::: pos.-specific C ::7:aa:a probability G ::3::::: matrix T a2:a::a: bits 2.2 ** * 2.0 ** * 1.8 * ***** 1.5 * ***** Relative 1.3 * ****** Entropy 1.1 ******** (14.5 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TACTCCTC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TASTCCTC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:5068965-5069045 54 1.36e-05 GCACAGTGTG TACTCCTC TCGGACTAAC chrII:13117289-13117369 43 1.36e-05 ACGCGTCGCG TACTCCTC TCGGATAACG chrI:4247572-4247652 43 1.36e-05 CGCGGCCGCG TACTCCTC GAGGACAAAA chrII:4791431-4791511 57 1.36e-05 GCCGGCCGTG TACTCCTC TCGGACAATA chrV:18981151-18981231 54 1.36e-05 ACCGCCGGTG TACTCCTC TCCGACAACG chrII:10538101-10538181 58 1.36e-05 CTCGGCCGTG TACTCCTC TCGGGCAATT chrIV:3803417-3803497 58 1.36e-05 CACGACCGTG TACTCCTC TCGGACAAGG chrI:6760274-6760354 63 1.36e-05 CTATCTCGTG TACTCCTC TCGAACATCG chrV:10320321-10320401 59 1.36e-05 CTCGGCCATG TACTCCTC TCGGACAAAC chrI:10161986-10162066 58 1.36e-05 TTCATGTATG TACTCCTC GTGGACTAAT chrIV:12278674-12278754 47 1.36e-05 CTCGGCCGTG TACTCCTC GTGGAGAACT chrIV:1347142-1347222 43 1.36e-05 CCGCTCGGTG TACTCCTC TCGGATAATA chrIII:5190356-5190436 46 1.36e-05 CTCGGCCGTG TACTCCTC TCGGATAATT chrV:10441283-10441363 27 1.36e-05 GACAACCGTG TACTCCTC CTAGACAATT chrIV:8973689-8973769 61 2.75e-05 CGCGGCCGTG TAGTCCTC TTGGACCAGC chrV:2127171-2127251 52 2.75e-05 GCTGCAATGC TAGTCCTC CCGGCCGTGT chrII:10395528-10395608 50 2.75e-05 TTCGGCCGTG TAGTCCTC TCGGAGTTTT chrII:15089575-15089655 52 2.75e-05 CGCGGCCGTG TAGTCCTC CTGGACAATG chrV:9536691-9536771 51 2.75e-05 CCCAAGTGTG TAGTCCTC TCCGACAATG chrIII:11112927-11113007 73 4.11e-05 gcgaaacgtt ttctcctc chrI:10192873-10192953 43 5.49e-05 GAAAAAAATT TTGTCCTC GTGTACGACA chrIII:9465603-9465683 5 5.49e-05 CTTT TTGTCCTC GTGTACTACG chrII:5819836-5819916 1 5.49e-05 . TTGTCCTC GTGTTGTTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TASTCCTC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:5068965-5069045 1.4e-05 53_[+4]_19 chrII:13117289-13117369 1.4e-05 42_[+4]_30 chrI:4247572-4247652 1.4e-05 42_[+4]_30 chrII:4791431-4791511 1.4e-05 56_[+4]_16 chrV:18981151-18981231 1.4e-05 53_[+4]_19 chrII:10538101-10538181 1.4e-05 57_[+4]_15 chrIV:3803417-3803497 1.4e-05 57_[+4]_15 chrI:6760274-6760354 1.4e-05 62_[+4]_10 chrV:10320321-10320401 1.4e-05 58_[+4]_14 chrI:10161986-10162066 1.4e-05 57_[+4]_15 chrIV:12278674-12278754 1.4e-05 46_[+4]_26 chrIV:1347142-1347222 1.4e-05 42_[+4]_30 chrIII:5190356-5190436 1.4e-05 45_[+4]_27 chrV:10441283-10441363 1.4e-05 26_[+4]_46 chrIV:8973689-8973769 2.7e-05 60_[+4]_12 chrV:2127171-2127251 2.7e-05 51_[+4]_21 chrII:10395528-10395608 2.7e-05 49_[+4]_23 chrII:15089575-15089655 2.7e-05 51_[+4]_21 chrV:9536691-9536771 2.7e-05 50_[+4]_22 chrIII:11112927-11113007 4.1e-05 72_[+4] chrI:10192873-10192953 5.5e-05 42_[+4]_30 chrIII:9465603-9465683 5.5e-05 4_[+4]_68 chrII:5819836-5819916 5.5e-05 [+4]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TASTCCTC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TASTCCTC width=8 seqs=23 chrIII:5068965-5069045 ( 54) TACTCCTC 1 chrII:13117289-13117369 ( 43) TACTCCTC 1 chrI:4247572-4247652 ( 43) TACTCCTC 1 chrII:4791431-4791511 ( 57) TACTCCTC 1 chrV:18981151-18981231 ( 54) TACTCCTC 1 chrII:10538101-10538181 ( 58) TACTCCTC 1 chrIV:3803417-3803497 ( 58) TACTCCTC 1 chrI:6760274-6760354 ( 63) TACTCCTC 1 chrV:10320321-10320401 ( 59) TACTCCTC 1 chrI:10161986-10162066 ( 58) TACTCCTC 1 chrIV:12278674-12278754 ( 47) TACTCCTC 1 chrIV:1347142-1347222 ( 43) TACTCCTC 1 chrIII:5190356-5190436 ( 46) TACTCCTC 1 chrV:10441283-10441363 ( 27) TACTCCTC 1 chrIV:8973689-8973769 ( 61) TAGTCCTC 1 chrV:2127171-2127251 ( 52) TAGTCCTC 1 chrII:10395528-10395608 ( 50) TAGTCCTC 1 chrII:15089575-15089655 ( 52) TAGTCCTC 1 chrV:9536691-9536771 ( 51) TAGTCCTC 1 chrIII:11112927-11113007 ( 73) TTCTCCTC 1 chrI:10192873-10192953 ( 43) TTGTCCTC 1 chrIII:9465603-9465683 ( 5) TTGTCCTC 1 chrII:5819836-5819916 ( 1) TTGTCCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TASTCCTC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0332 E= 1.2e-011 -1117 -1117 -1117 183 155 -1117 -1117 -69 -1117 159 66 -1117 -1117 -1117 -1117 183 -1117 221 -1117 -1117 -1117 221 -1117 -1117 -1117 -1117 -1117 183 -1117 221 -1117 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TASTCCTC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 1.2e-011 0.000000 0.000000 0.000000 1.000000 0.826087 0.000000 0.000000 0.173913 0.000000 0.652174 0.347826 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TASTCCTC MEME-4 regular expression -------------------------------------------------------------------------------- TA[CG]TCCTC -------------------------------------------------------------------------------- Time 14.68 secs. ******************************************************************************** ******************************************************************************** MOTIF TTBGCGCG MEME-5 width = 8 sites = 27 llr = 247 E-value = 4.8e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTBGCGCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 2:3:a:92 probability G ::3a:a18 matrix T 8a4::::: bits 2.2 *** 2.0 *** 1.8 * **** 1.5 * **** Relative 1.3 * ***** Entropy 1.1 ** ***** (13.2 bits) 0.9 ** ***** 0.7 ** ***** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTGCGCG consensus C C C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTBGCGCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:15013985-15014065 13 1.95e-05 AATGCAAGAT TTCGCGCG CTCGGCCAGA chrIV:1328668-1328748 46 1.95e-05 AGAAAAAACA TTTGCGCG TCAATTAAAG chrV:10736873-10736953 17 1.95e-05 GAAAAAATAG TTTGCGCG CGTGAAAACT chrIII:2582524-2582604 67 1.95e-05 CTAGGATTCA TTTGCGCG CGAAAT chrIII:8683848-8683928 23 1.95e-05 TGGCCTAGGA TTTGCGCG TGGCAAAAAT chrII:12914849-12914929 23 1.95e-05 TAATTTGAAT TTCGCGCG GAATTGAGTT chrI:5281826-5281906 36 1.95e-05 CCATCAGTTA TTTGCGCG CCAATTTTGA chrIII:11286252-11286332 47 1.95e-05 CCCACGCCTT TTTGCGCG GCAATTCAAA chrIII:5190356-5190436 8 1.95e-05 TTTGAAT TTCGCGCG AAAATGAGTG chrIV:5188202-5188282 14 1.95e-05 TATTTTTAAT TTCGCGCG CAAAAAAAGT chrI:8759889-8759969 47 2.81e-05 TCCACTTGTG TTGGCGCG AAAGTTGAGA chrIII:5803106-5803186 58 2.81e-05 GTCACATGTT TTGGCGCG CTCTTCGGCG chrIV:6369658-6369738 49 2.81e-05 AAAACTCATT TTGGCGCG AAATTCAAAT chrIV:12559172-12559252 19 4.31e-05 AAATTTAAAA CTCGCGCG CATTTTCTTG chrII:3553655-3553735 71 4.31e-05 CTGAAAATCA Cttgcgcg tc chrI:1034341-1034421 37 4.31e-05 TCAAATCTCC CTCGCGCG GGTTTCTAGG chrIV:16415765-16415845 40 4.31e-05 CTAGGAAACT CTTGCGCG GTTATTTGAA chrIV:7816566-7816646 38 4.31e-05 CTAGGAAACT CTTGCGCG GAAGTTCAAA chrX:13584999-13585079 14 6.89e-05 TCATTCAAAT TTCGCGCC ACATACGGCC chrV:6433731-6433811 35 6.89e-05 CGGACATTAC TTCGCGCC GAGACCCTTC chrII:2451164-2451244 29 7.74e-05 ATTTAAAACT TTGGCGCC GGTGGCCGTG chrIII:12665756-12665836 9 7.74e-05 AATTCACG TTGGCGCC AACTCTGGCT chrIV:10242844-10242924 46 7.74e-05 AGATTCCACC TTGGCGCC AAAAAGTTTC chrV:13568676-13568756 68 9.72e-05 CTCAAACTTT TTTGCGGG ACTTT chrI:14756448-14756528 43 9.72e-05 ATGCCACTTT TTTGCGGG AATTTTAAAT chrV:16022776-16022856 7 1.12e-04 TCAAAA CTCGCGCC GAAATGTGGT chrI:8511444-8511524 45 1.21e-04 GTCCGCAACA TTGGCGGG TGTTCAAATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTBGCGCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:15013985-15014065 1.9e-05 12_[+5]_60 chrIV:1328668-1328748 1.9e-05 45_[+5]_27 chrV:10736873-10736953 1.9e-05 16_[+5]_56 chrIII:2582524-2582604 1.9e-05 66_[+5]_6 chrIII:8683848-8683928 1.9e-05 22_[+5]_50 chrII:12914849-12914929 1.9e-05 22_[+5]_50 chrI:5281826-5281906 1.9e-05 35_[+5]_37 chrIII:11286252-11286332 1.9e-05 46_[+5]_26 chrIII:5190356-5190436 1.9e-05 7_[+5]_65 chrIV:5188202-5188282 1.9e-05 13_[+5]_59 chrI:8759889-8759969 2.8e-05 46_[+5]_26 chrIII:5803106-5803186 2.8e-05 57_[+5]_15 chrIV:6369658-6369738 2.8e-05 48_[+5]_24 chrIV:12559172-12559252 4.3e-05 18_[+5]_54 chrII:3553655-3553735 4.3e-05 70_[+5]_2 chrI:1034341-1034421 4.3e-05 36_[+5]_36 chrIV:16415765-16415845 4.3e-05 39_[+5]_33 chrIV:7816566-7816646 4.3e-05 37_[+5]_35 chrX:13584999-13585079 6.9e-05 13_[+5]_59 chrV:6433731-6433811 6.9e-05 34_[+5]_38 chrII:2451164-2451244 7.7e-05 28_[+5]_44 chrIII:12665756-12665836 7.7e-05 8_[+5]_64 chrIV:10242844-10242924 7.7e-05 45_[+5]_27 chrV:13568676-13568756 9.7e-05 67_[+5]_5 chrI:14756448-14756528 9.7e-05 42_[+5]_30 chrV:16022776-16022856 0.00011 6_[+5]_66 chrI:8511444-8511524 0.00012 44_[+5]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTBGCGCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTBGCGCG width=8 seqs=27 chrI:15013985-15014065 ( 13) TTCGCGCG 1 chrIV:1328668-1328748 ( 46) TTTGCGCG 1 chrV:10736873-10736953 ( 17) TTTGCGCG 1 chrIII:2582524-2582604 ( 67) TTTGCGCG 1 chrIII:8683848-8683928 ( 23) TTTGCGCG 1 chrII:12914849-12914929 ( 23) TTCGCGCG 1 chrI:5281826-5281906 ( 36) TTTGCGCG 1 chrIII:11286252-11286332 ( 47) TTTGCGCG 1 chrIII:5190356-5190436 ( 8) TTCGCGCG 1 chrIV:5188202-5188282 ( 14) TTCGCGCG 1 chrI:8759889-8759969 ( 47) TTGGCGCG 1 chrIII:5803106-5803186 ( 58) TTGGCGCG 1 chrIV:6369658-6369738 ( 49) TTGGCGCG 1 chrIV:12559172-12559252 ( 19) CTCGCGCG 1 chrII:3553655-3553735 ( 71) CTTGCGCG 1 chrI:1034341-1034421 ( 37) CTCGCGCG 1 chrIV:16415765-16415845 ( 40) CTTGCGCG 1 chrIV:7816566-7816646 ( 38) CTTGCGCG 1 chrX:13584999-13585079 ( 14) TTCGCGCC 1 chrV:6433731-6433811 ( 35) TTCGCGCC 1 chrII:2451164-2451244 ( 29) TTGGCGCC 1 chrIII:12665756-12665836 ( 9) TTGGCGCC 1 chrIV:10242844-10242924 ( 46) TTGGCGCC 1 chrV:13568676-13568756 ( 68) TTTGCGGG 1 chrI:14756448-14756528 ( 43) TTTGCGGG 1 chrV:16022776-16022856 ( 7) CTCGCGCC 1 chrI:8511444-8511524 ( 45) TTGGCGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTBGCGCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0506 E= 4.8e-006 -1140 4 -1140 147 -1140 -1140 -1140 183 -1140 62 24 54 -1140 -1140 218 -1140 -1140 221 -1140 -1140 -1140 -1140 218 -1140 -1140 204 -99 -1140 -1140 4 182 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTBGCGCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 4.8e-006 0.000000 0.222222 0.000000 0.777778 0.000000 0.000000 0.000000 1.000000 0.000000 0.333333 0.259259 0.407407 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.888889 0.111111 0.000000 0.000000 0.222222 0.777778 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTBGCGCG MEME-5 regular expression -------------------------------------------------------------------------------- [TC]T[TCG]GCGC[GC] -------------------------------------------------------------------------------- Time 17.91 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:4862116-4862196 9.43e-01 80 chrI:2385141-2385221 7.47e-02 80 chrIII:12247458-12247538 1.19e-03 36_[+1(4.66e-05)]_11_[+1(4.66e-05)]_\ 17 chrIII:3322762-3322842 2.16e-03 23_[+1(4.66e-05)]_49 chrII:1500460-1500540 7.24e-01 80 chrIV:9797520-9797600 6.83e-04 15_[+1(4.66e-05)]_20_[+2(1.92e-05)]_\ 29 chrIV:2706804-2706884 2.31e-03 13_[+2(1.92e-05)]_59 chrV:14133193-14133273 7.45e-01 80 chrV:1060319-1060399 8.08e-05 58_[+2(1.92e-05)]_14 chrI:3059145-3059225 2.26e-03 16_[+1(4.66e-05)]_56 chrII:2157687-2157767 1.42e-01 80 chrIII:7858649-7858729 7.85e-01 80 chrIV:11592955-11593035 9.02e-04 80 chrIV:6369658-6369738 8.52e-07 12_[+3(6.95e-05)]_2_[+1(1.53e-05)]_\ 18_[+5(2.81e-05)]_24 chrV:10441283-10441363 3.84e-04 3_[+1(4.66e-05)]_15_[+4(1.36e-05)]_\ 46 chrIII:13439567-13439647 6.19e-03 18_[+1(4.66e-05)]_54 chrIV:2987098-2987178 3.95e-02 80 chrIV:5188202-5188282 2.31e-06 13_[+5(1.95e-05)]_18_[+2(2.58e-05)]_\ 9_[+2(6.42e-05)]_16 chrII:1123346-1123426 3.34e-05 20_[+1(1.53e-05)]_10_[+2(1.92e-05)]_\ 13_[+2(8.35e-06)]_13 chrI:2830390-2830470 3.62e-03 80 chrI:636784-636864 1.05e-05 20_[+1(4.66e-05)]_18_[+1(2.71e-05)]_\ 26 chrI:5118907-5118987 4.35e-04 23_[+1(4.66e-05)]_31_[+2(1.92e-05)]_\ 10 chrIII:1540267-1540347 1.73e-03 16_[+1(2.71e-05)]_56 chrI:8255146-8255226 2.49e-03 60_[+1(4.66e-05)]_12 chrV:20090837-20090917 3.21e-05 35_[+1(2.71e-05)]_23_[+2(8.35e-06)]_\ 6 chrI:7676284-7676364 8.83e-01 80 chrIII:3322560-3322640 7.55e-01 80 chrIV:2705554-2705634 1.35e-02 71_[+2(1.92e-05)]_1 chrIV:3807720-3807800 2.60e-06 38_[+1(4.66e-05)]_17_[+2(8.35e-06)]_\ 9 chrIII:8967810-8967890 9.14e-06 9_[+1(2.71e-05)]_21_[+2(8.35e-06)]_\ 34 chrIII:5190356-5190436 2.28e-07 7_[+5(1.95e-05)]_20_[+2(2.58e-05)]_\ 2_[+4(1.36e-05)]_27 chrIV:1347142-1347222 8.77e-06 9_[+1(1.53e-05)]_25_[+4(1.36e-05)]_\ 30 chrIII:12673521-12673601 2.90e-06 26_[+3(6.95e-05)]_10_[+1(1.53e-05)]_\ 7_[+2(8.35e-06)]_13 chrI:9080114-9080194 3.65e-03 28_[+2(4.26e-05)]_44 chrII:5511873-5511953 6.02e-05 14_[+3(6.95e-05)]_16_[+2(1.92e-05)]_\ 6_[+2(1.92e-05)]_20 chrII:484586-484666 9.92e-01 80 chrIV:2224810-2224890 1.09e-05 24_[+1(4.66e-05)]_11_[+2(1.92e-05)]_\ 29 chrV:156219-156299 7.39e-06 29_[+2(1.92e-05)]_10_[+4(1.36e-05)]_\ 25 chrIV:8019895-8019975 4.19e-04 43_[+2(2.58e-05)]_11_[+2(8.35e-06)]_\ 10 chrX:2857568-2857648 3.05e-02 80 chrII:14857079-14857159 4.08e-06 14_[+1(1.53e-05)]_14_[+1(4.66e-05)]_\ 13_[+2(8.35e-06)]_15 chrV:2603171-2603251 9.54e-04 40_[+2(4.26e-05)]_32 chrI:10835357-10835437 6.12e-01 80 chrV:13409228-13409308 1.15e-05 19_[+3(6.95e-05)]_2_[+1(1.53e-05)]_\ 43 chrIV:4712613-4712693 9.91e-04 8_[+2(8.35e-06)]_14_[+2(8.35e-06)]_\ 42 chrI:11222151-11222231 4.83e-04 33_[+2(4.26e-05)]_39 chrIII:11286252-11286332 2.56e-04 46_[+5(1.95e-05)]_26 chrIV:7816566-7816646 7.97e-06 5_[+3(4.36e-05)]_10_[+1(4.66e-05)]_\ 6_[+5(4.31e-05)]_35 chrIV:257300-257380 6.26e-04 80 chrI:5281826-5281906 1.85e-05 14_[+2(8.35e-06)]_13_[+5(1.95e-05)]_\ 37 chrII:10714417-10714497 5.62e-01 80 chrV:10031896-10031976 1.90e-04 44_[+3(4.36e-05)]_10_[+1(4.66e-05)]_\ 10 chrIV:8235521-8235601 9.92e-01 80 chrIII:11415681-11415761 9.40e-04 22_[+2(8.35e-06)]_50 chrIV:9777704-9777784 1.95e-02 25_[+2(1.92e-05)]_47 chrIV:10242844-10242924 5.85e-03 45_[+5(7.74e-05)]_27 chrI:8664868-8664948 5.18e-04 [+1(2.71e-05)]_15_[+2(4.26e-05)]_49 chrI:4215771-4215851 5.14e-03 80 chrIV:4171905-4171985 1.43e-03 31_[+1(4.66e-05)]_41 chrI:14756448-14756528 3.82e-04 25_[+2(4.26e-05)]_9_[+5(9.72e-05)]_\ 30 chrIV:4042403-4042483 3.13e-03 41_[+1(2.71e-05)]_31 chrX:16376147-16376227 6.07e-04 23_[+1(4.66e-05)]_49 chrV:16022776-16022856 4.61e-06 26_[+1(2.71e-05)]_[+1(2.71e-05)]_15_\ [+2(1.92e-05)]_15 chrII:5819836-5819916 4.48e-04 [+4(5.49e-05)]_72 chrI:13835174-13835254 1.12e-03 34_[+1(2.71e-05)]_12_[+2(7.51e-05)]_\ 18 chrIV:13783690-13783770 2.63e-04 44_[+2(8.35e-06)]_28 chrII:11464079-11464159 5.42e-03 22_[+1(4.66e-05)]_14_[+1(4.66e-05)]_\ 28 chrIII:4343281-4343361 1.03e-03 17_[+3(6.95e-05)]_55 chrIII:12665756-12665836 1.93e-02 8_[+5(7.74e-05)]_64 chrIV:6747824-6747904 1.54e-03 80 chrX:1853745-1853825 2.65e-02 80 chrIII:8700710-8700790 3.85e-02 23_[+3(2.89e-05)]_49 chrI:8511444-8511524 6.68e-04 12_[+2(1.92e-05)]_60 chrIII:4986952-4987032 9.48e-04 80 chrII:12914849-12914929 1.21e-06 22_[+5(1.95e-05)]_19_[+2(2.58e-05)]_\ 9_[+2(6.42e-05)]_6 chrIV:813491-813571 2.16e-01 80 chrV:20424929-20425009 4.51e-04 44_[+1(4.66e-05)]_28 chrIII:5803106-5803186 5.22e-07 12_[+1(2.71e-05)]_1_[+1(4.66e-05)]_\ 6_[+1(1.53e-05)]_14_[+5(2.81e-05)]_15 chrIV:12278674-12278754 2.05e-07 36_[+2(2.58e-05)]_2_[+4(1.36e-05)]_\ 14_[+3(4.36e-05)]_4 chrIV:17126617-17126697 3.62e-02 44_[+1(4.66e-05)]_28 chrV:13551779-13551859 7.40e-04 58_[+4(1.36e-05)]_14 chrIII:4905491-4905571 5.34e-03 1_[+2(8.35e-06)]_71 chrIV:12653250-12653330 1.02e-05 37_[+1(1.53e-05)]_20_[+2(1.92e-05)]_\ 7 chrX:7798523-7798603 5.45e-03 44_[+2(6.42e-05)]_28 chrV:9536691-9536771 1.19e-05 27_[+1(4.66e-05)]_15_[+4(2.75e-05)]_\ 22 chrIII:12665960-12666040 8.18e-01 80 chrI:5659141-5659221 1.01e-04 3_[+1(4.66e-05)]_20_[+2(1.92e-05)]_\ 41 chrIII:8683848-8683928 1.16e-05 12_[+1(4.66e-05)]_2_[+5(1.95e-05)]_\ 50 chrIII:10628079-10628159 4.57e-06 22_[+1(4.66e-05)]_9_[+1(1.53e-05)]_\ 12_[+2(1.92e-05)]_13 chrIV:2705777-2705857 1.05e-01 80 chrIV:11315032-11315112 4.79e-04 20_[+3(2.89e-05)]_52 chrIII:10064298-10064378 1.75e-07 18_[+1(1.53e-05)]_7_[+1(4.66e-05)]_\ 19_[+2(6.42e-05)]_12 chrIV:10890255-10890335 9.91e-01 80 chrI:8759889-8759969 1.51e-05 32_[+2(6.42e-05)]_6_[+5(2.81e-05)]_\ 26 chrII:11578470-11578550 2.04e-03 59_[+1(4.66e-05)]_13 chrV:4387722-4387802 1.00e+00 80 chrI:10161986-10162066 8.02e-06 57_[+4(1.36e-05)]_[+3(1.44e-05)]_7 chrV:265227-265307 8.95e-01 80 chrI:13559836-13559916 9.54e-01 80 chrIII:9808286-9808366 9.98e-01 80 chrII:5512076-5512156 7.67e-01 80 chrI:9860243-9860323 9.42e-01 80 chrII:15089575-15089655 4.93e-06 33_[+2(1.92e-05)]_10_[+4(2.75e-05)]_\ 21 chrI:9112102-9112182 9.99e-01 80 chrII:9931147-9931227 1.08e-02 80 chrX:2176559-2176639 4.85e-01 80 chrV:10320321-10320401 7.32e-06 26_[+2(1.92e-05)]_14_[+2(8.35e-06)]_\ 2_[+4(1.36e-05)]_14 chrV:1949534-1949614 9.96e-01 80 chrIII:2582524-2582604 9.20e-05 33_[+1(4.66e-05)]_11_[+1(4.66e-05)]_\ 6_[+5(1.95e-05)]_6 chrIII:8529054-8529134 1.12e-04 37_[+1(4.66e-05)]_12_[+2(8.35e-06)]_\ 15 chrI:6760274-6760354 2.56e-06 27_[+3(1.44e-05)]_9_[+1(1.53e-05)]_\ 10_[+4(1.36e-05)]_10 chrIV:8498877-8498957 1.19e-03 35_[+2(8.35e-06)]_37 chrIII:4912468-4912548 2.00e-05 35_[+3(6.95e-05)]_15_[+2(2.58e-05)]_\ [+1(4.66e-05)]_6 chrV:10736873-10736953 1.22e-04 16_[+5(1.95e-05)]_15_[+1(4.66e-05)]_\ 33 chrIII:13187924-13188004 8.76e-04 80 chrV:6107615-6107695 2.02e-03 54_[+1(4.66e-05)]_18 chrIII:9465603-9465683 4.03e-06 4_[+4(5.49e-05)]_17_[+1(4.66e-05)]_\ 20_[+2(1.92e-05)]_15 chrII:2752712-2752792 1.37e-06 38_[+1(4.66e-05)]_10_[+2(1.92e-05)]_\ 16 chrII:2451164-2451244 9.08e-04 28_[+5(7.74e-05)]_15_[+1(1.53e-05)]_\ 21 chrII:11290553-11290633 4.61e-05 1_[+3(6.95e-05)]_2_[+1(1.53e-05)]_\ 61 chrIV:2219865-2219945 6.52e-01 80 chrI:5106142-5106222 7.14e-06 65_[+2(2.58e-05)]_7 chrIV:16415765-16415845 1.37e-06 7_[+3(6.95e-05)]_2_[+1(1.53e-05)]_\ [+1(4.66e-05)]_6_[+5(4.31e-05)]_33 chrIV:1328668-1328748 1.71e-01 45_[+5(1.95e-05)]_27 chrII:2794415-2794495 9.17e-02 80 chrV:17870864-17870944 9.65e-01 80 chrI:12816566-12816646 9.73e-01 80 chrIII:11112927-11113007 1.60e-05 49_[+2(8.35e-06)]_[+1(2.71e-05)]_7_\ [+4(4.11e-05)] chrIV:13263037-13263117 2.21e-03 41_[+3(2.89e-05)]_31 chrII:8927416-8927496 1.76e-01 80 chrII:3815347-3815427 9.58e-01 80 chrIV:13289505-13289585 3.06e-05 27_[+1(4.66e-05)]_8_[+1(2.71e-05)]_\ 29 chrIV:1446337-1446417 2.27e-04 26_[+3(6.95e-05)]_46 chrI:3636638-3636718 1.29e-04 33_[+2(1.92e-05)]_39 chrIV:16422334-16422414 5.91e-04 9_[+2(8.35e-06)]_63 chrV:6433731-6433811 1.78e-03 34_[+5(6.89e-05)]_38 chrII:4993958-4994038 1.56e-03 43_[+1(4.66e-05)]_29 chrV:13657014-13657094 1.05e-01 80 chrX:13584999-13585079 1.48e-05 13_[+5(6.89e-05)]_5_[+1(1.53e-05)]_\ 16_[+2(1.92e-05)]_22 chrX:16605217-16605297 8.67e-01 80 chrI:9393779-9393859 7.41e-05 23_[+3(1.44e-05)]_10_[+1(4.66e-05)]_\ 31 chrII:2991817-2991897 9.15e-01 80 chrV:13085760-13085840 9.88e-01 80 chrIV:3803417-3803497 9.61e-05 57_[+4(1.36e-05)]_15 chrII:6097607-6097687 3.28e-06 24_[+3(6.95e-05)]_2_[+1(1.53e-05)]_\ 24_[+2(8.35e-06)]_6 chrX:7569823-7569903 2.57e-05 14_[+1(2.71e-05)]_[+1(4.66e-05)]_50 chrII:10200906-10200986 1.75e-03 42_[+1(4.66e-05)]_30 chrI:15013985-15014065 1.78e-06 12_[+5(1.95e-05)]_[+2(8.35e-06)]_21_\ [+2(1.92e-05)]_23 chrI:96487-96567 1.40e-04 66_[+2(1.92e-05)]_6 chrII:10395528-10395608 1.76e-04 49_[+4(2.75e-05)]_23 chrI:11668034-11668114 8.31e-03 65_[+1(4.66e-05)]_7 chrI:7080471-7080551 3.00e-01 80 chrV:2127171-2127251 1.34e-04 25_[+1(4.66e-05)]_18_[+4(2.75e-05)]_\ 21 chrIII:10720686-10720766 6.03e-01 80 chrI:9445805-9445885 7.92e-04 7_[+1(4.66e-05)]_8_[+2(1.92e-05)]_\ 49 chrI:13470415-13470495 4.72e-05 15_[+3(2.89e-05)]_28_[+1(2.71e-05)]_\ 21 chrII:15197280-15197360 1.86e-01 80 chrV:7084881-7084961 6.34e-04 32_[+1(4.66e-05)]_8_[+2(2.58e-05)]_\ 24 chrII:13180444-13180524 9.92e-01 80 chrIII:13474691-13474771 7.77e-01 80 chrX:14514570-14514650 3.37e-01 80 chrV:16537937-16538017 3.09e-02 5_[+2(6.42e-05)]_67 chrIII:8850807-8850887 6.34e-04 48_[+2(1.92e-05)]_24 chrII:476161-476241 2.06e-01 80 chrIV:4086109-4086189 8.49e-01 80 chrIII:2331292-2331372 7.23e-01 80 chrIII:7199004-7199084 8.54e-05 12_[+1(4.66e-05)]_20_[+2(4.26e-05)]_\ 32 chrII:6383338-6383418 1.31e-02 17_[+1(2.71e-05)]_55 chrIII:8144750-8144830 3.66e-05 13_[+3(6.95e-05)]_36_[+2(1.92e-05)]_\ 15 chrV:10148495-10148575 9.05e-01 80 chrIII:11290693-11290773 4.77e-05 24_[+3(6.95e-05)]_9_[+1(1.53e-05)]_\ 31 chrIV:16995572-16995652 1.93e-03 39_[+2(4.26e-05)]_33 chrIII:6625448-6625528 1.12e-02 80 chrIV:6752583-6752663 8.81e-01 80 chrII:3482365-3482445 1.02e-03 8_[+1(2.71e-05)]_64 chrIII:4196740-4196820 5.36e-03 13_[+1(4.66e-05)]_59 chrIII:6008862-6008942 2.40e-01 80 chrV:6230114-6230194 9.96e-01 80 chrX:3379244-3379324 9.45e-05 14_[+3(4.36e-05)]_27_[+1(1.53e-05)]_\ 23 chrIII:12218850-12218930 9.89e-01 80 chrII:10538101-10538181 2.82e-07 21_[+3(6.95e-05)]_18_[+2(2.58e-05)]_\ 2_[+4(1.36e-05)]_15 chrIII:12673728-12673808 4.53e-02 80 chrII:12661875-12661955 1.89e-05 26_[+1(4.66e-05)]_25_[+2(1.92e-05)]_\ 13 chrIII:12273753-12273833 3.08e-03 52_[+2(1.92e-05)]_20 chrI:1034341-1034421 6.92e-05 36_[+5(4.31e-05)]_5_[+2(1.92e-05)]_\ 23 chrI:7159316-7159396 3.29e-03 64_[+2(6.42e-05)]_8 chrIII:11113196-11113276 3.39e-04 13_[+1(4.66e-05)]_59 chrIV:1761785-1761865 1.45e-01 80 chrI:2985253-2985333 9.90e-01 80 chrII:13583080-13583160 1.00e+00 80 chrV:18717807-18717887 5.80e-01 80 chrV:15082458-15082538 8.68e-04 21_[+3(6.95e-05)]_15_[+2(3.43e-05)]_\ 28 chrI:5312421-5312501 6.30e-01 80 chrIII:12369987-12370067 9.16e-01 80 chrX:10000320-10000400 2.22e-01 80 chrV:18981151-18981231 1.02e-05 36_[+2(1.92e-05)]_9_[+4(1.36e-05)]_\ 19 chrI:3070205-3070285 6.69e-02 80 chrX:4853170-4853250 5.19e-04 29_[+1(2.71e-05)]_43 chrI:10192873-10192953 4.94e-06 42_[+4(5.49e-05)]_16_[+1(4.66e-05)]_\ 6 chrII:4791431-4791511 6.22e-07 23_[+3(5.47e-05)]_8_[+2(2.58e-05)]_\ 9_[+4(1.36e-05)]_16 chrIII:4905694-4905774 8.36e-01 80 chrIV:6631985-6632065 6.39e-05 72_[+2(6.42e-05)] chrII:6776815-6776895 3.31e-06 40_[+1(4.66e-05)]_15_[+4(1.36e-05)]_\ 9 chrI:851599-851679 1.83e-03 31_[+2(1.92e-05)]_12_[+2(1.92e-05)]_\ 21 chrIII:4999027-4999107 4.37e-05 22_[+2(8.35e-06)]_50 chrII:11176624-11176704 4.85e-04 80 chrI:4247572-4247652 1.92e-07 24_[+2(1.92e-05)]_2_[+1(2.71e-05)]_\ [+4(1.36e-05)]_30 chrIII:9868277-9868357 5.81e-04 80 chrII:11542488-11542568 6.65e-01 80 chrIV:10381110-10381190 7.29e-01 80 chrX:8953122-8953202 8.38e-01 80 chrII:5081678-5081758 3.50e-01 80 chrI:2710510-2710590 6.97e-01 80 chrIII:11445443-11445523 6.91e-01 80 chrII:13117289-13117369 1.67e-05 25_[+2(1.92e-05)]_9_[+4(1.36e-05)]_\ 30 chrV:4042134-4042214 9.41e-01 80 chrX:3999731-3999811 9.93e-01 80 chrIV:15526636-15526716 2.21e-05 2_[+3(6.95e-05)]_14_[+3(2.89e-05)]_\ 2_[+1(1.53e-05)]_38 chrV:16538164-16538244 8.03e-01 80 chrV:13568676-13568756 3.65e-02 67_[+5(9.72e-05)]_5 chrX:15745374-15745454 4.36e-01 80 chrI:2097061-2097141 1.76e-03 21_[+1(4.66e-05)]_12_[+1(4.66e-05)]_\ 31 chrIII:5108934-5109014 1.41e-02 56_[+1(1.53e-05)]_16 chrI:5375462-5375542 9.97e-01 80 chrIII:783429-783509 2.91e-04 46_[+1(1.53e-05)]_11_[+1(2.71e-05)]_\ 7 chrIII:1540470-1540550 6.99e-01 80 chrI:3176574-3176654 5.23e-03 32_[+2(4.26e-05)]_40 chrIV:1687302-1687382 9.38e-01 80 chrV:14317774-14317854 1.71e-01 80 chrII:3553655-3553735 2.05e-01 70_[+5(4.31e-05)]_2 chrI:13422658-13422738 4.95e-01 80 chrIII:12612353-12612433 9.52e-01 80 chrIII:5722027-5722107 4.48e-06 27_[+2(1.92e-05)]_9_[+4(1.36e-05)]_\ 28 chrIV:8973689-8973769 1.60e-05 60_[+4(2.75e-05)]_12 chrIII:12278911-12278991 9.86e-01 80 chrIV:2707003-2707083 6.93e-01 80 chrIII:5499061-5499141 4.41e-01 80 chrV:11029448-11029528 1.72e-04 10_[+3(6.95e-05)]_8_[+3(1.44e-05)]_\ 22_[+1(6.16e-05)]_16 chrIV:5548980-5549060 7.03e-02 80 chrV:7465707-7465787 1.79e-03 19_[+1(4.66e-05)]_53 chrV:20416779-20416859 1.37e-01 80 chrI:2776222-2776302 6.14e-02 80 chrV:5843502-5843582 2.42e-01 80 chrV:10526077-10526157 5.00e-03 80 chrII:8039582-8039662 1.06e-03 80 chrIII:2576300-2576380 7.19e-01 80 chrII:9968484-9968564 4.94e-04 38_[+1(1.53e-05)]_34 chrIV:12559172-12559252 1.11e-01 18_[+5(4.31e-05)]_54 chrIII:10719370-10719450 3.83e-04 32_[+2(8.35e-06)]_40 chrIII:5068965-5069045 1.99e-05 10_[+1(2.71e-05)]_35_[+4(1.36e-05)]_\ 19 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************