********************************************************************************
MEME - Motif discovery tool
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey and Charles Elkan,
"Fitting a mixture model by expectation maximization to discover
motifs in biopolymers", Proceedings of the Second International
Conference on Intelligent Systems for Molecular Biology, pp. 28-36,
AAAI Press, Menlo Park, California, 1994.
********************************************************************************


********************************************************************************
TRAINING SET
********************************************************************************
PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-9.fasta
CONTROL SEQUENCES= --none--
ALPHABET= ACGT
Sequence name            Weight Length  Sequence name            Weight Length  
-------------            ------ ------  -------------            ------ ------  
chrI:8263752-8263832     1.0000     80  chrI:11126473-11126553   1.0000     80  
chrX:7285093-7285173     1.0000     80  chrV:966302-966382       1.0000     80  
chrX:6316102-6316182     1.0000     80  chrII:243596-243676      1.0000     80  
chrX:15189415-15189495   1.0000     80  chrV:11959096-11959176   1.0000     80  
chrX:10482952-10483032   1.0000     80  chrI:12665000-12665080   1.0000     80  
chrIV:13026239-13026319  1.0000     80  chrV:3057682-3057762     1.0000     80  
chrIV:14033099-14033179  1.0000     80  chrX:15276846-15276926   1.0000     80  
chrIV:11027716-11027796  1.0000     80  chrIV:2053660-2053740    1.0000     80  
chrIV:12417964-12418044  1.0000     80  chrI:6435885-6435965     1.0000     80  
chrX:1323145-1323225     1.0000     80  chrX:16682055-16682135   1.0000     80  
chrX:11605831-11605911   1.0000     80  chrX:14561636-14561716   1.0000     80  
********************************************************************************

********************************************************************************
COMMAND LINE SUMMARY
********************************************************************************
This information can also be useful in the event you wish to report a
problem with the MEME software.

command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ceh-9/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-9.fasta 

model:  mod=         zoops    nmotifs=         5    evt=           inf
objective function:           em=       E-value of product of p-values
                              starts=   E-value of product of p-values
strands: +
width:  minw=            8    maxw=            8
nsites: minsites=        2    maxsites=       22    wnsites=       0.8
theta:  spmap=         uni    spfuzz=        0.5
em:     prior=   dirichlet    b=            0.01    maxiter=        50
        distance=    1e-05
trim:   wg=             11    ws=              1    endgaps=       yes
data:   n=            1760    N=              22
sample: seed=            0    hsfrac=          0
        searchsize=   1760    norand=         no    csites=       1000
Letter frequencies in dataset:
A 0.274 C 0.248 G 0.209 T 0.269 
Background letter frequencies (from file dataset with add-one prior applied):
A 0.274 C 0.248 G 0.209 T 0.269 
Background model order: 0
********************************************************************************


********************************************************************************
MOTIF CTTTTCSC MEME-1	width =   8  sites =  13  llr = 100  E-value = 3.6e-001
********************************************************************************
--------------------------------------------------------------------------------
	Motif CTTTTCSC MEME-1 Description
--------------------------------------------------------------------------------
Simplified        A  :3::::::
pos.-specific     C  7::2:a59
probability       G  ::::1:3:
matrix            T  37a89:21

         bits    2.3         
                 2.0      *  
                 1.8   *  *  
                 1.6   * ** *
Relative         1.4   **** *
Entropy          1.1 * **** *
(11.1 bits)      0.9 ****** *
                 0.7 ********
                 0.5 ********
                 0.2 ********
                 0.0 --------

Multilevel           CTTTTCCC
consensus            TA    G 
sequence                     
                             
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif CTTTTCSC MEME-1 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value              Site
-------------             ----- ---------            --------
chrX:10482952-10483032       41  1.98e-05 GGTTGAGTTG CTTTTCCC AATATTTTCC
chrV:11959096-11959176       12  1.98e-05 TCTTTTTCTG CTTTTCCC TCAACACACA
chrII:243596-243676          65  3.65e-05 CAAACTACAA CTTTTCGC CCAGAACA  
chrX:6316102-6316182          2  5.67e-05          A CATTTCCC AGTGCACATT
chrI:6435885-6435965          9  7.82e-05   CGTCATCG TTTTTCCC CTTTTTTCTC
chrX:1323145-1323225          8  9.52e-05    TTAATCT CATTTCGC ATGGAGAAGA
chrX:15276846-15276926       42  1.35e-04 GACATTTGCA CTTTtctc tatttctctt
chrIV:14033099-14033179      24  1.53e-04 CTCTCATCAG CTTCTCCC TATCGGTCCC
chrV:966302-966382           53  2.46e-04 CACCTAACAC TATTTCGC CGCCGTCTTC
chrIV:2053660-2053740        58  2.69e-04 GGGCTTCATC TTTTTCTC TCTCACTCAC
chrIV:13026239-13026319      62  3.29e-04 CCGCTTCTGG TTTCTCCC TCCGGATGAA
chrX:7285093-7285173         71  3.29e-04 TTTCGTCGCT CTTTTCCT CT        
chrIV:12417964-12418044      18  5.47e-04 ACGCGTTATC CATTGCGC CACGCGGCCA
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif CTTTTCSC MEME-1 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
chrX:10482952-10483032              2e-05  40_[+1]_32
chrV:11959096-11959176              2e-05  11_[+1]_61
chrII:243596-243676               3.6e-05  64_[+1]_8
chrX:6316102-6316182              5.7e-05  1_[+1]_71
chrI:6435885-6435965              7.8e-05  8_[+1]_64
chrX:1323145-1323225              9.5e-05  7_[+1]_65
chrX:15276846-15276926            0.00013  41_[+1]_31
chrIV:14033099-14033179           0.00015  23_[+1]_49
chrV:966302-966382                0.00025  52_[+1]_20
chrIV:2053660-2053740             0.00027  57_[+1]_15
chrIV:13026239-13026319           0.00033  61_[+1]_11
chrX:7285093-7285173              0.00033  70_[+1]_2
chrIV:12417964-12418044           0.00055  17_[+1]_55
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif CTTTTCSC MEME-1 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF CTTTTCSC width=8 seqs=13
chrX:10482952-10483032   (   41) CTTTTCCC  1 
chrV:11959096-11959176   (   12) CTTTTCCC  1 
chrII:243596-243676      (   65) CTTTTCGC  1 
chrX:6316102-6316182     (    2) CATTTCCC  1 
chrI:6435885-6435965     (    9) TTTTTCCC  1 
chrX:1323145-1323225     (    8) CATTTCGC  1 
chrX:15276846-15276926   (   42) CTTTTCTC  1 
chrIV:14033099-14033179  (   24) CTTCTCCC  1 
chrV:966302-966382       (   53) TATTTCGC  1 
chrIV:2053660-2053740    (   58) TTTTTCTC  1 
chrIV:13026239-13026319  (   62) TTTCTCCC  1 
chrX:7285093-7285173     (   71) CTTTTCCT  1 
chrIV:12417964-12418044  (   18) CATTGCGC  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif CTTTTCSC MEME-1 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 8 n= 1606 bayes= 7.47122 E= 3.6e-001 
 -1035    148  -1035     20 
    17  -1035  -1035    136 
 -1035  -1035  -1035    190 
 -1035    -69  -1035    165 
 -1035  -1035   -144    178 
 -1035    201  -1035  -1035 
 -1035    112     56    -80 
 -1035    189  -1035   -180 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif CTTTTCSC MEME-1 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 3.6e-001 
 0.000000  0.692308  0.000000  0.307692 
 0.307692  0.000000  0.000000  0.692308 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.153846  0.000000  0.846154 
 0.000000  0.000000  0.076923  0.923077 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.538462  0.307692  0.153846 
 0.000000  0.923077  0.000000  0.076923 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif CTTTTCSC MEME-1 regular expression
--------------------------------------------------------------------------------
[CT][TA]TTTC[CG]C
--------------------------------------------------------------------------------




Time  6.14 secs.

********************************************************************************


********************************************************************************
MOTIF TCTGCGYC MEME-2	width =   8  sites =   5  llr = 48  E-value = 2.5e+002
********************************************************************************
--------------------------------------------------------------------------------
	Motif TCTGCGYC MEME-2 Description
--------------------------------------------------------------------------------
Simplified        A  ::::::::
pos.-specific     C  :a::a:48
probability       G  ::2a:a:2
matrix            T  a:8:::6:

         bits    2.3    * *  
                 2.0  * ***  
                 1.8 ** ***  
                 1.6 ** ***  
Relative         1.4 ****** *
Entropy          1.1 ****** *
(14.0 bits)      0.9 ********
                 0.7 ********
                 0.5 ********
                 0.2 ********
                 0.0 --------

Multilevel           TCTGCGTC
consensus              G   CG
sequence                     
                             
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif TCTGCGYC MEME-2 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value              Site
-------------             ----- ---------            --------
chrIV:14033099-14033179       7  1.30e-05     TAGTTG TCTGCGTC TCTCATCAGC
chrV:966302-966382           27  1.30e-05 GTATGTAAAG TCTGCGTC TCTATAGCCA
chrV:11959096-11959176       43  2.49e-05 ACATAAACCA TCTGCGCC AAAAACAATT
chrV:3057682-3057762         45  4.59e-05 TACCACCGCC TCTGCGTG GACTGTTGTA
chrI:12665000-12665080       11  5.52e-05 GCGATTCAAA TCGGCGCC AATTTAAAGT
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif TCTGCGYC MEME-2 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
chrIV:14033099-14033179           1.3e-05  6_[+2]_66
chrV:966302-966382                1.3e-05  26_[+2]_46
chrV:11959096-11959176            2.5e-05  42_[+2]_30
chrV:3057682-3057762              4.6e-05  44_[+2]_28
chrI:12665000-12665080            5.5e-05  10_[+2]_62
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif TCTGCGYC MEME-2 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF TCTGCGYC width=8 seqs=5
chrIV:14033099-14033179  (    7) TCTGCGTC  1 
chrV:966302-966382       (   27) TCTGCGTC  1 
chrV:11959096-11959176   (   43) TCTGCGCC  1 
chrV:3057682-3057762     (   45) TCTGCGTG  1 
chrI:12665000-12665080   (   11) TCGGCGCC  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif TCTGCGYC MEME-2 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 8 n= 1606 bayes= 8.57509 E= 2.5e+002 
  -897   -897   -897    189 
  -897    201   -897   -897 
  -897   -897     -6    157 
  -897   -897    225   -897 
  -897    201   -897   -897 
  -897   -897    225   -897 
  -897     69   -897    116 
  -897    169     -6   -897 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif TCTGCGYC MEME-2 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.5e+002 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  0.200000  0.800000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.400000  0.000000  0.600000 
 0.000000  0.800000  0.200000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif TCTGCGYC MEME-2 regular expression
--------------------------------------------------------------------------------
TC[TG]GCG[TC][CG]
--------------------------------------------------------------------------------




Time  8.39 secs.

********************************************************************************


********************************************************************************
MOTIF RAWGAAGA MEME-3	width =   8  sites =  13  llr = 94  E-value = 2.5e+002
********************************************************************************
--------------------------------------------------------------------------------
	Motif RAWGAAGA MEME-3 Description
--------------------------------------------------------------------------------
Simplified        A  5a5:581a
pos.-specific     C  1::::11:
probability       G  5::a2:8:
matrix            T  ::5:22::

         bits    2.3    *    
                 2.0    *    
                 1.8  * *   *
                 1.6  * *   *
Relative         1.4  * *  **
Entropy          1.1  * *  **
(10.5 bits)      0.9  *** ***
                 0.7 **** ***
                 0.5 ********
                 0.2 ********
                 0.0 --------

Multilevel           AAAGAAGA
consensus            G T G   
sequence                 T   
                             
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif RAWGAAGA MEME-3 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value              Site
-------------             ----- ---------            --------
chrX:1323145-1323225         30  1.41e-05 AGAAGAGAAA GAAGAAGA TGCAGAAAAC
chrX:15189415-15189495       56  1.41e-05 ACTGAACGGC GAAGAAGA AACGCGAGAA
chrX:14561636-14561716       30  2.79e-05 AGCACGAAGA GATGAAGA CGTGCACGTA
chrIV:2053660-2053740         6  2.79e-05      GATTT GATGAAGA AGTGTGGGGG
chrX:15276846-15276926       26  4.64e-05 CGGAGAATGC AAAGAAGA CATTTGCACT
chrX:7285093-7285173          2  1.14e-04          C AAAGGAGA CGCAGCTTCA
chrIV:11027716-11027796      17  1.77e-04 agatagGAAT AATGTAGA GTAACGAGAC
chrI:8263752-8263832         25  3.64e-04 ACGTATGGAA AAAGACGA CACATGCATG
chrX:11605831-11605911        2  4.55e-04          T GAAGAAAA TATAAGTTTT
chrIV:14033099-14033179      57  4.55e-04 TGATGGCGGC AATGGTGA CTCTCTCTCT
chrV:966302-966382           70  5.68e-04 CCGCCGTCTT CAAGTAGA GAG       
chrI:11126473-11126553       68  6.10e-04 ACATCCGGAA AATGTTGA CGACG     
chrX:6316102-6316182         38  7.87e-04 AAATCCACCA GATGGACA CGACGGAAGA
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif RAWGAAGA MEME-3 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
chrX:1323145-1323225              1.4e-05  29_[+3]_43
chrX:15189415-15189495            1.4e-05  55_[+3]_17
chrX:14561636-14561716            2.8e-05  29_[+3]_43
chrIV:2053660-2053740             2.8e-05  5_[+3]_67
chrX:15276846-15276926            4.6e-05  25_[+3]_47
chrX:7285093-7285173              0.00011  1_[+3]_71
chrIV:11027716-11027796           0.00018  16_[+3]_56
chrI:8263752-8263832              0.00036  24_[+3]_48
chrX:11605831-11605911            0.00046  1_[+3]_71
chrIV:14033099-14033179           0.00046  56_[+3]_16
chrV:966302-966382                0.00057  69_[+3]_3
chrI:11126473-11126553            0.00061  67_[+3]_5
chrX:6316102-6316182              0.00079  37_[+3]_35
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif RAWGAAGA MEME-3 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF RAWGAAGA width=8 seqs=13
chrX:1323145-1323225     (   30) GAAGAAGA  1 
chrX:15189415-15189495   (   56) GAAGAAGA  1 
chrX:14561636-14561716   (   30) GATGAAGA  1 
chrIV:2053660-2053740    (    6) GATGAAGA  1 
chrX:15276846-15276926   (   26) AAAGAAGA  1 
chrX:7285093-7285173     (    2) AAAGGAGA  1 
chrIV:11027716-11027796  (   17) AATGTAGA  1 
chrI:8263752-8263832     (   25) AAAGACGA  1 
chrX:11605831-11605911   (    2) GAAGAAAA  1 
chrIV:14033099-14033179  (   57) AATGGTGA  1 
chrV:966302-966382       (   70) CAAGTAGA  1 
chrI:11126473-11126553   (   68) AATGTTGA  1 
chrX:6316102-6316182     (   38) GATGGACA  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif RAWGAAGA MEME-3 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 8 n= 1606 bayes= 7.47122 E= 2.5e+002 
    75   -169    114  -1035 
   187  -1035  -1035  -1035 
    98  -1035  -1035     78 
 -1035  -1035    226  -1035 
    98  -1035     14    -22 
   149   -169  -1035    -80 
  -183   -169    202  -1035 
   187  -1035  -1035  -1035 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif RAWGAAGA MEME-3 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 2.5e+002 
 0.461538  0.076923  0.461538  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.538462  0.000000  0.000000  0.461538 
 0.000000  0.000000  1.000000  0.000000 
 0.538462  0.000000  0.230769  0.230769 
 0.769231  0.076923  0.000000  0.153846 
 0.076923  0.076923  0.846154  0.000000 
 1.000000  0.000000  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif RAWGAAGA MEME-3 regular expression
--------------------------------------------------------------------------------
[AG]A[AT]G[AGT]AGA
--------------------------------------------------------------------------------




Time  8.82 secs.

********************************************************************************


********************************************************************************
MOTIF YGGCGCGC MEME-4	width =   8  sites =   2  llr = 22  E-value = 1.3e+003
********************************************************************************
--------------------------------------------------------------------------------
	Motif YGGCGCGC MEME-4 Description
--------------------------------------------------------------------------------
Simplified        A  ::::::::
pos.-specific     C  5::a:a:a
probability       G  :aa:a:a:
matrix            T  5:::::::

         bits    2.3  ** * * 
                 2.0  *******
                 1.8  *******
                 1.6  *******
Relative         1.4  *******
Entropy          1.1  *******
(16.0 bits)      0.9 ********
                 0.7 ********
                 0.5 ********
                 0.2 ********
                 0.0 --------

Multilevel           CGGCGCGC
consensus            T       
sequence                     
                             
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif YGGCGCGC MEME-4 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value              Site
-------------             ----- ---------            --------
chrI:12665000-12665080       41  7.22e-06 GCAAACACGG CGGCGCGC ACTTGCGTAC
chrX:11605831-11605911       46  1.50e-05 AAGAGCCGTT TGGCGCGC TACAAACACA
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif YGGCGCGC MEME-4 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
chrI:12665000-12665080            7.2e-06  40_[+4]_32
chrX:11605831-11605911            1.5e-05  45_[+4]_27
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif YGGCGCGC MEME-4 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF YGGCGCGC width=8 seqs=2
chrI:12665000-12665080   (   41) CGGCGCGC  1 
chrX:11605831-11605911   (   46) TGGCGCGC  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif YGGCGCGC MEME-4 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 8 n= 1606 bayes= 9.64746 E= 1.3e+003 
  -765    101   -765     89 
  -765   -765    225   -765 
  -765   -765    225   -765 
  -765    200   -765   -765 
  -765   -765    225   -765 
  -765    200   -765   -765 
  -765   -765    225   -765 
  -765    200   -765   -765 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif YGGCGCGC MEME-4 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.3e+003 
 0.000000  0.500000  0.000000  0.500000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif YGGCGCGC MEME-4 regular expression
--------------------------------------------------------------------------------
[CT]GGCGCGC
--------------------------------------------------------------------------------




Time  9.17 secs.

********************************************************************************


********************************************************************************
MOTIF AGAGGGST MEME-5	width =   8  sites =   2  llr = 22  E-value = 3.6e+003
********************************************************************************
--------------------------------------------------------------------------------
	Motif AGAGGGST MEME-5 Description
--------------------------------------------------------------------------------
Simplified        A  a:a:::::
pos.-specific     C  ::::::5:
probability       G  :a:aaa5:
matrix            T  :::::::a

         bits    2.3  * ***  
                 2.0  * ***  
                 1.8 ****** *
                 1.6 ****** *
Relative         1.4 ****** *
Entropy          1.1 ********
(15.8 bits)      0.9 ********
                 0.7 ********
                 0.5 ********
                 0.2 ********
                 0.0 --------

Multilevel           AGAGGGCT
consensus                  G 
sequence                     
                             
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif AGAGGGST MEME-5 sites sorted by position p-value
--------------------------------------------------------------------------------
Sequence name             Start   P-value              Site
-------------             ----- ---------            --------
chrI:8263752-8263832          1  8.05e-06          . AGAGGGGT CAACAGACGT
chrIV:2053660-2053740        45  1.76e-05 TGCTCCCAGG AGAGGGCT TCATCTTTTT
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif AGAGGGST MEME-5 block diagrams
--------------------------------------------------------------------------------
SEQUENCE NAME            POSITION P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
chrI:8263752-8263832              8.1e-06  [+5]_72
chrIV:2053660-2053740             1.8e-05  44_[+5]_28
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif AGAGGGST MEME-5 in BLOCKS format
--------------------------------------------------------------------------------
BL   MOTIF AGAGGGST width=8 seqs=2
chrI:8263752-8263832     (    1) AGAGGGGT  1 
chrIV:2053660-2053740    (   45) AGAGGGCT  1 
//

--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif AGAGGGST MEME-5 position-specific scoring matrix
--------------------------------------------------------------------------------
log-odds matrix: alength= 4 w= 8 n= 1606 bayes= 7.8776 E= 3.6e+003 
   186   -765   -765   -765 
  -765   -765    225   -765 
   186   -765   -765   -765 
  -765   -765    225   -765 
  -765   -765    225   -765 
  -765   -765    225   -765 
  -765    101    125   -765 
  -765   -765   -765    189 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif AGAGGGST MEME-5 position-specific probability matrix
--------------------------------------------------------------------------------
letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.6e+003 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.500000  0.500000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
--------------------------------------------------------------------------------

--------------------------------------------------------------------------------
	Motif AGAGGGST MEME-5 regular expression
--------------------------------------------------------------------------------
AGAGGG[CG]T
--------------------------------------------------------------------------------




Time  9.54 secs.

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SUMMARY OF MOTIFS
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	Combined block diagrams: non-overlapping sites with p-value < 0.0001
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SEQUENCE NAME            COMBINED P-VALUE  MOTIF DIAGRAM
-------------            ----------------  -------------
chrI:8263752-8263832             1.30e-02  [+5(8.05e-06)]_72
chrI:11126473-11126553           4.59e-01  80
chrX:7285093-7285173             7.34e-03  80
chrV:966302-966382               1.30e-03  26_[+2(1.30e-05)]_46
chrX:6316102-6316182             4.11e-02  1_[+1(5.67e-05)]_71
chrII:243596-243676              1.24e-01  64_[+1(3.65e-05)]_8
chrX:15189415-15189495           1.91e-02  55_[+3(1.41e-05)]_17
chrV:11959096-11959176           2.88e-03  11_[+1(1.98e-05)]_23_[+2(2.49e-05)]_\
    30
chrX:10482952-10483032           5.40e-02  40_[+1(1.98e-05)]_32
chrI:12665000-12665080           2.10e-03  10_[+2(5.52e-05)]_22_[+4(7.22e-06)]_\
    32
chrIV:13026239-13026319          1.78e-01  80
chrV:3057682-3057762             5.81e-02  44_[+2(4.59e-05)]_28
chrIV:14033099-14033179          5.15e-04  6_[+2(1.30e-05)]_66
chrX:15276846-15276926           1.29e-02  25_[+3(4.64e-05)]_47
chrIV:11027716-11027796          1.33e-01  80
chrIV:2053660-2053740            1.12e-04  5_[+3(2.79e-05)]_31_[+5(1.76e-05)]_\
    28
chrIV:12417964-12418044          1.15e-01  80
chrI:6435885-6435965             2.39e-01  8_[+1(7.82e-05)]_64
chrX:1323145-1323225             6.10e-03  7_[+1(9.52e-05)]_14_[+3(1.41e-05)]_\
    43
chrX:16682055-16682135           2.47e-01  80
chrX:11605831-11605911           1.23e-03  45_[+4(1.50e-05)]_27
chrX:14561636-14561716           5.73e-02  29_[+3(2.79e-05)]_43
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Stopped because requested number of motifs (5) found.
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CPU: c27n12.farnam.hpc.yale.internal

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