******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-83.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII:7338376-7338456 1.0000 80 chrII:3340317-3340397 1.0000 80 chrIII:4459043-4459123 1.0000 80 chrIV:556188-556268 1.0000 80 chrI:6288399-6288479 1.0000 80 chrI:5350046-5350126 1.0000 80 chrV:2595580-2595660 1.0000 80 chrI:1736398-1736478 1.0000 80 chrV:19685790-19685870 1.0000 80 chrIII:4501299-4501379 1.0000 80 chrIII:11466493-11466573 1.0000 80 chrV:11767499-11767579 1.0000 80 chrI:14592384-14592464 1.0000 80 chrV:4513176-4513256 1.0000 80 chrI:9357303-9357383 1.0000 80 chrIV:2154330-2154410 1.0000 80 chrI:14718569-14718649 1.0000 80 chrI:9358723-9358803 1.0000 80 chrI:9906028-9906108 1.0000 80 chrIII:5188179-5188259 1.0000 80 chrIV:13191897-13191977 1.0000 80 chrIII:1446906-1446986 1.0000 80 chrX:14116710-14116790 1.0000 80 chrI:2739262-2739342 1.0000 80 chrIV:8083275-8083355 1.0000 80 chrIII:12895938-12896018 1.0000 80 chrII:11975783-11975863 1.0000 80 chrX:11041135-11041215 1.0000 80 chrIV:3299393-3299473 1.0000 80 chrIV:405484-405564 1.0000 80 chrII:2340147-2340227 1.0000 80 chrIII:4276622-4276702 1.0000 80 chrIV:17103061-17103141 1.0000 80 chrII:14651485-14651565 1.0000 80 chrI:12010747-12010827 1.0000 80 chrX:1615444-1615524 1.0000 80 chrX:17288556-17288636 1.0000 80 chrI:11085278-11085358 1.0000 80 chrIV:10866345-10866425 1.0000 80 chrIV:4015386-4015466 1.0000 80 chrI:7038888-7038968 1.0000 80 chrX:2429907-2429987 1.0000 80 chrV:1582667-1582747 1.0000 80 chrI:5874034-5874114 1.0000 80 chrV:20740847-20740927 1.0000 80 chrIII:945906-945986 1.0000 80 chrX:10924654-10924734 1.0000 80 chrIII:2147170-2147250 1.0000 80 chrI:3243402-3243482 1.0000 80 chrV:2186114-2186194 1.0000 80 chrI:3242270-3242350 1.0000 80 chrX:14583272-14583352 1.0000 80 chrII:10999760-10999840 1.0000 80 chrX:10352875-10352955 1.0000 80 chrX:13951301-13951381 1.0000 80 chrI:818557-818637 1.0000 80 chrIV:13668192-13668272 1.0000 80 chrI:11089401-11089481 1.0000 80 chrI:7689495-7689575 1.0000 80 chrIII:4447684-4447764 1.0000 80 chrI:1608013-1608093 1.0000 80 chrIII:11614067-11614147 1.0000 80 chrV:4166333-4166413 1.0000 80 chrI:14968150-14968230 1.0000 80 chrIV:1918323-1918403 1.0000 80 chrII:8898580-8898660 1.0000 80 chrIII:11007274-11007354 1.0000 80 chrX:16403478-16403558 1.0000 80 chrIV:184117-184197 1.0000 80 chrII:10999532-10999612 1.0000 80 chrII:8985687-8985767 1.0000 80 chrX:12505738-12505818 1.0000 80 chrIII:6329627-6329707 1.0000 80 chrX:16967906-16967986 1.0000 80 chrV:671726-671806 1.0000 80 chrI:8767411-8767491 1.0000 80 chrX:2539715-2539795 1.0000 80 chrIII:6589061-6589141 1.0000 80 chrIV:3766780-3766860 1.0000 80 chrV:16027942-16028022 1.0000 80 chrII:4153052-4153132 1.0000 80 chrIII:11387092-11387172 1.0000 80 chrIV:13892733-13892813 1.0000 80 chrI:12207247-12207327 1.0000 80 chrX:8159548-8159628 1.0000 80 chrV:5401864-5401944 1.0000 80 chrII:4589229-4589309 1.0000 80 chrII:2445337-2445417 1.0000 80 chrV:17743950-17744030 1.0000 80 chrII:1674194-1674274 1.0000 80 chrII:3991708-3991788 1.0000 80 chrIII:9225179-9225259 1.0000 80 chrII:11537740-11537820 1.0000 80 chrI:13508969-13509049 1.0000 80 chrX:1514819-1514899 1.0000 80 chrIII:8465925-8466005 1.0000 80 chrIII:8804931-8805011 1.0000 80 chrV:1860578-1860658 1.0000 80 chrI:13402223-13402303 1.0000 80 chrI:446835-446915 1.0000 80 chrIV:12553185-12553265 1.0000 80 chrIV:12546858-12546938 1.0000 80 chrIV:3743966-3744046 1.0000 80 chrV:4734122-4734202 1.0000 80 chrII:167827-167907 1.0000 80 chrV:14510297-14510377 1.0000 80 chrI:4689486-4689566 1.0000 80 chrIII:13780938-13781018 1.0000 80 chrV:12038512-12038592 1.0000 80 chrIV:12262706-12262786 1.0000 80 chrIV:1913556-1913636 1.0000 80 chrIV:1903771-1903851 1.0000 80 chrI:11791052-11791132 1.0000 80 chrI:2210203-2210283 1.0000 80 chrV:12510424-12510504 1.0000 80 chrII:13904311-13904391 1.0000 80 chrII:12968590-12968670 1.0000 80 chrIII:8674824-8674904 1.0000 80 chrV:4507228-4507308 1.0000 80 chrI:10433018-10433098 1.0000 80 chrIV:579907-579987 1.0000 80 chrX:3907816-3907896 1.0000 80 chrIV:3166483-3166563 1.0000 80 chrIV:6887235-6887315 1.0000 80 chrIII:2961363-2961443 1.0000 80 chrIII:7734736-7734816 1.0000 80 chrII:12989549-12989629 1.0000 80 chrIV:3890470-3890550 1.0000 80 chrX:5823258-5823338 1.0000 80 chrII:13013515-13013595 1.0000 80 chrIII:3302910-3302990 1.0000 80 chrIII:8805844-8805924 1.0000 80 chrII:14079534-14079614 1.0000 80 chrIII:13658075-13658155 1.0000 80 chrI:14137935-14138015 1.0000 80 chrI:2836275-2836355 1.0000 80 chrII:1734699-1734779 1.0000 80 chrIV:9126875-9126955 1.0000 80 chrX:8803180-8803260 1.0000 80 chrV:12353072-12353152 1.0000 80 chrI:549893-549973 1.0000 80 chrIII:2978637-2978717 1.0000 80 chrI:11770944-11771024 1.0000 80 chrI:13284652-13284732 1.0000 80 chrI:14526654-14526734 1.0000 80 chrX:14877948-14878028 1.0000 80 chrIV:11726087-11726167 1.0000 80 chrII:9295268-9295348 1.0000 80 chrI:13842768-13842848 1.0000 80 chrI:8905553-8905633 1.0000 80 chrIII:4491931-4492011 1.0000 80 chrV:3758793-3758873 1.0000 80 chrIII:10673205-10673285 1.0000 80 chrI:14048835-14048915 1.0000 80 chrII:11589380-11589460 1.0000 80 chrIII:12368471-12368551 1.0000 80 chrIII:9948172-9948252 1.0000 80 chrI:14104012-14104092 1.0000 80 chrI:14391730-14391810 1.0000 80 chrII:9258332-9258412 1.0000 80 chrIV:4760111-4760191 1.0000 80 chrI:12173828-12173908 1.0000 80 chrIII:4194117-4194197 1.0000 80 chrIV:6121589-6121669 1.0000 80 chrI:4685357-4685437 1.0000 80 chrV:13159400-13159480 1.0000 80 chrII:13932977-13933057 1.0000 80 chrIV:9207260-9207340 1.0000 80 chrIII:13779506-13779586 1.0000 80 chrII:2330698-2330778 1.0000 80 chrIII:8301160-8301240 1.0000 80 chrII:4986208-4986288 1.0000 80 chrII:9258618-9258698 1.0000 80 chrII:11466673-11466753 1.0000 80 chrIII:12840065-12840145 1.0000 80 chrIII:12127318-12127398 1.0000 80 chrX:434003-434083 1.0000 80 chrV:8247509-8247589 1.0000 80 chrIV:8902583-8902663 1.0000 80 chrX:4962828-4962908 1.0000 80 chrIV:8334516-8334596 1.0000 80 chrV:4963091-4963171 1.0000 80 chrII:11614749-11614829 1.0000 80 chrI:6154552-6154632 1.0000 80 chrV:13814984-13815064 1.0000 80 chrI:11934642-11934722 1.0000 80 chrIV:3337502-3337582 1.0000 80 chrI:11395840-11395920 1.0000 80 chrV:6026478-6026558 1.0000 80 chrI:6668517-6668597 1.0000 80 chrIV:7487757-7487837 1.0000 80 chrV:6835755-6835835 1.0000 80 chrX:812001-812081 1.0000 80 chrX:2843766-2843846 1.0000 80 chrII:3437430-3437510 1.0000 80 chrI:2614251-2614331 1.0000 80 chrI:7706142-7706222 1.0000 80 chrII:1226542-1226622 1.0000 80 chrI:13645036-13645116 1.0000 80 chrIII:10672051-10672131 1.0000 80 chrIV:1204574-1204654 1.0000 80 chrII:15230442-15230522 1.0000 80 chrV:13113638-13113718 1.0000 80 chrX:12693294-12693374 1.0000 80 chrI:12504525-12504605 1.0000 80 chrIII:1054300-1054380 1.0000 80 chrII:8467215-8467295 1.0000 80 chrIII:13581806-13581886 1.0000 80 chrIII:11458070-11458150 1.0000 80 chrIII:12368697-12368777 1.0000 80 chrIII:13473962-13474042 1.0000 80 chrIV:6978132-6978212 1.0000 80 chrI:2735116-2735196 1.0000 80 chrIII:12608371-12608451 1.0000 80 chrIII:11935980-11936060 1.0000 80 chrX:12169502-12169582 1.0000 80 chrI:14730801-14730881 1.0000 80 chrIII:2628462-2628542 1.0000 80 chrIII:8265951-8266031 1.0000 80 chrX:4617977-4618057 1.0000 80 chrX:8603165-8603245 1.0000 80 chrI:2829306-2829386 1.0000 80 chrIII:2988152-2988232 1.0000 80 chrII:1228662-1228742 1.0000 80 chrV:205739-205819 1.0000 80 chrX:6928756-6928836 1.0000 80 chrIV:1911781-1911861 1.0000 80 chrI:14478233-14478313 1.0000 80 chrX:10396943-10397023 1.0000 80 chrII:13216486-13216566 1.0000 80 chrX:8925613-8925693 1.0000 80 chrV:189445-189525 1.0000 80 chrIII:5264329-5264409 1.0000 80 chrI:814504-814584 1.0000 80 chrIV:3258218-3258298 1.0000 80 chrIII:1165714-1165794 1.0000 80 chrV:12331929-12332009 1.0000 80 chrI:11526452-11526532 1.0000 80 chrIV:14621638-14621718 1.0000 80 chrIV:1358372-1358452 1.0000 80 chrI:11583989-11584069 1.0000 80 chrV:5284556-5284636 1.0000 80 chrX:12692292-12692372 1.0000 80 chrI:11670231-11670311 1.0000 80 chrX:8151576-8151656 1.0000 80 chrIII:880715-880795 1.0000 80 chrII:10163890-10163970 1.0000 80 chrIII:5027477-5027557 1.0000 80 chrI:4209437-4209517 1.0000 80 chrX:7227192-7227272 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ceh-83/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-83.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.281 C 0.216 G 0.218 T 0.284 Background letter frequencies (from file dataset with add-one prior applied): A 0.281 C 0.216 G 0.218 T 0.284 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF ARAAAAWT MEME-1 width = 8 sites = 57 llr = 418 E-value = 7.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARAAAAWT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 55aaaa6: pos.-specific C 1::::::: probability G 25:::::2 matrix T 2:::::48 bits 2.2 2.0 1.8 **** 1.5 **** Relative 1.3 **** Entropy 1.1 ***** * (10.6 bits) 0.9 ******* 0.7 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel AAAAAAAT consensus GG TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAAAAWT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:14968150-14968230 51 3.05e-05 TTTCATTTCC AGAAAAAT AATTAGGTTT chrX:10924654-10924734 61 3.05e-05 CTGATAACGG AGAAAAAT TGAACACATT chrI:4209437-4209517 3 6.98e-05 AA AAAAAAAT GAAACGACAC chrII:10163890-10163970 43 6.98e-05 AGTTTAACAC AAAAAAAT CAAATCACAG chrIII:880715-880795 10 6.98e-05 AAAATTTAA AAAAAAAT TTTATTATGT chrIII:2988152-2988232 43 6.98e-05 ACAATTCGCA AAAAAAAT ATGAGGGGAA chrIII:13473962-13474042 49 6.98e-05 GATTGACTCT AAAAAAAT TTTTTTAAAA chrIII:12368697-12368777 17 6.98e-05 ATTCTTTTCT AAAAAAAT TAGTTTTGTT chrV:4963091-4963171 10 6.98e-05 TTACCCTGA AAAAAAAT GAGAAAAATC chrI:13284652-13284732 65 6.98e-05 CGATTTTGGC AAAAAAAT TCTTTTTT chrIV:9126875-9126955 36 6.98e-05 ATTTTCAAAA AAAAAAAT CATAAATACC chrI:2210203-2210283 52 6.98e-05 TTTTTTGGGC AAAAAAAT AATTTCTCTG chrV:14510297-14510377 73 6.98e-05 AGGCTTTCAG AAAAAAAT chrIII:945906-945986 48 6.98e-05 TTTCGTTGAC AAAAAAAT GGAGAATTTC chrIV:4015386-4015466 56 6.98e-05 AAAAATAGGA AAAAAAAT CAGATTTTAT chrX:7227192-7227272 20 1.01e-04 AGCCAACCAG AGAAAATT CTCCATCTAT chrX:12693294-12693374 71 1.01e-04 AGCACAAGTG AGAAAATT GT chrII:2330698-2330778 69 1.01e-04 ggaaaatttt agaaaatt ttgg chrIV:12262706-12262786 20 1.40e-04 AGAAAAGGTT AAAAAATT TGAACGAAAA chrIV:13668192-13668272 21 1.40e-04 agaagcttct aaaaaatt cgagaaaatt chrII:14651485-14651565 10 1.40e-04 tttgctttt aaaaaatt tgcatggcac chrV:2595580-2595660 19 1.40e-04 CTCATCTTGT AAAAAATT CAGTTATGGT chrIII:2628462-2628542 65 1.64e-04 ccgatttgcc ggaaaaat cgttagct chrI:2614251-2614331 46 1.64e-04 CGGGCTCTGC GGAAAAAT CCGATTTGTC chrIII:11387092-11387172 71 1.64e-04 ctgatgtgcc ggaaaaat ca chrIV:184117-184197 6 1.64e-04 TTGTT GGAAAAAT TACTGTTGGT chrIII:4491931-4492011 62 1.94e-04 ATGAGGAAGG GAAAAAAT GAGAGGAAAT chrX:1615444-1615524 17 2.18e-04 TAGCTAGCCA AGAAAAAG CTGCACGATC chrV:189445-189525 55 2.48e-04 TAGGAGTGCT AAAAAAAG CGATAGAGGA chrI:11770944-11771024 16 2.48e-04 ACTGCAATCA AAAAAAAG AGCAAACTCC chrII:13013515-13013595 41 2.48e-04 AAAACAAGAA AAAAAAAG TTTCATGAGC chrI:6288399-6288479 51 2.48e-04 AGTCCTGTAC AAAAAAAG CGAGAAGACC chrIII:5264329-5264409 30 3.03e-04 GTTTTGGTAT GGAAAATT GTATTTGTTC chrIV:1911781-1911861 69 3.03e-04 GCCTTGTCCT GGAAAATT GTTT chrX:8603165-8603245 65 3.03e-04 gggaaaatgg ggaaaatt agggaaaa chrI:4685357-4685437 72 3.03e-04 ATTCTATTTC TGAAAAAT A chrII:9258332-9258412 11 3.03e-04 GGAGTATGAG TGAAAAAT GCCAATAGAT chrI:1608013-1608093 52 3.03e-04 GACATGGCCT GGAAAATT TGGAATTTGA chrIII:2147170-2147250 53 3.03e-04 aaatttgcaa tgaaaaat gcaaaaaaac chrIII:8674824-8674904 65 3.73e-04 CGATTCGCCT GAAAAATT TTGAAAAT chrIV:1913556-1913636 73 3.73e-04 CATTAACAAT TAAAAAAT chrX:12169502-12169582 57 3.97e-04 CCAGAAAACA AGAAAATG GTAGCACGCT chrIV:6978132-6978212 11 3.97e-04 CGGTGTATCA AGAAAATG GAGCCGCTTC chrIII:4194117-4194197 50 3.97e-04 AGTCAGGAGG AGAAAATG GATCGTCGGA chrI:11395840-11395920 62 4.51e-04 ttcaaaattt cgaaaaat atttgggtcc chrX:3907816-3907896 16 5.30e-04 GAATTTAAAA CAAAAAAT ACAGTACTAG chrII:11537740-11537820 41 5.30e-04 TATCACCGGG TGAAAATT CGCATGGGTC chrX:16403478-16403558 49 5.30e-04 TTTTGATGAT Ggaaaaag atgaaaaagc chrI:12010747-12010827 11 5.30e-04 ttgctggatt tgaaaatt tccggcaaat chrIII:5188179-5188259 63 5.30e-04 GCTCTGTATT CAAAAAAT CTCAAAAAAT chrIII:8265951-8266031 1 5.94e-04 . TAAAAATT TTCAAGATGC chrII:12989549-12989629 32 5.94e-04 TTCCCGGGGC GAAAAAAG GAAACAGAGA chrI:2739262-2739342 18 5.94e-04 GTGAAGCATT TAAAAATT AATTCGAGTA chrIII:12895938-12896018 36 6.17e-04 ttgccgcaat cgaaaatt tccggcaaat chrIII:12368471-12368551 23 6.90e-04 CACATATGAT TGAAAAAG CGCGCGCACC chrIII:2961363-2961443 36 6.90e-04 TTTTTTTGGC CAAAAATT ATTCCACATA chrV:12331929-12332009 25 7.44e-04 TTTGAAAACC TAAAAAAG TTTCGCTCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAAAAWT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:14968150-14968230 3e-05 50_[+1]_22 chrX:10924654-10924734 3e-05 60_[+1]_12 chrI:4209437-4209517 7e-05 2_[+1]_70 chrII:10163890-10163970 7e-05 42_[+1]_30 chrIII:880715-880795 7e-05 9_[+1]_63 chrIII:2988152-2988232 7e-05 42_[+1]_30 chrIII:13473962-13474042 7e-05 48_[+1]_24 chrIII:12368697-12368777 7e-05 16_[+1]_56 chrV:4963091-4963171 7e-05 9_[+1]_63 chrI:13284652-13284732 7e-05 64_[+1]_8 chrIV:9126875-9126955 7e-05 35_[+1]_37 chrI:2210203-2210283 7e-05 51_[+1]_21 chrV:14510297-14510377 7e-05 72_[+1] chrIII:945906-945986 7e-05 47_[+1]_25 chrIV:4015386-4015466 7e-05 55_[+1]_17 chrX:7227192-7227272 0.0001 19_[+1]_53 chrX:12693294-12693374 0.0001 70_[+1]_2 chrII:2330698-2330778 0.0001 68_[+1]_4 chrIV:12262706-12262786 0.00014 19_[+1]_53 chrIV:13668192-13668272 0.00014 20_[+1]_52 chrII:14651485-14651565 0.00014 9_[+1]_63 chrV:2595580-2595660 0.00014 18_[+1]_54 chrIII:2628462-2628542 0.00016 64_[+1]_8 chrI:2614251-2614331 0.00016 45_[+1]_27 chrIII:11387092-11387172 0.00016 70_[+1]_2 chrIV:184117-184197 0.00016 5_[+1]_67 chrIII:4491931-4492011 0.00019 61_[+1]_11 chrX:1615444-1615524 0.00022 16_[+1]_56 chrV:189445-189525 0.00025 54_[+1]_18 chrI:11770944-11771024 0.00025 15_[+1]_57 chrII:13013515-13013595 0.00025 40_[+1]_32 chrI:6288399-6288479 0.00025 50_[+1]_22 chrIII:5264329-5264409 0.0003 29_[+1]_43 chrIV:1911781-1911861 0.0003 68_[+1]_4 chrX:8603165-8603245 0.0003 64_[+1]_8 chrI:4685357-4685437 0.0003 71_[+1]_1 chrII:9258332-9258412 0.0003 10_[+1]_62 chrI:1608013-1608093 0.0003 51_[+1]_21 chrIII:2147170-2147250 0.0003 52_[+1]_20 chrIII:8674824-8674904 0.00037 64_[+1]_8 chrIV:1913556-1913636 0.00037 72_[+1] chrX:12169502-12169582 0.0004 56_[+1]_16 chrIV:6978132-6978212 0.0004 10_[+1]_62 chrIII:4194117-4194197 0.0004 49_[+1]_23 chrI:11395840-11395920 0.00045 61_[+1]_11 chrX:3907816-3907896 0.00053 15_[+1]_57 chrII:11537740-11537820 0.00053 40_[+1]_32 chrX:16403478-16403558 0.00053 48_[+1]_24 chrI:12010747-12010827 0.00053 10_[+1]_62 chrIII:5188179-5188259 0.00053 62_[+1]_10 chrIII:8265951-8266031 0.00059 [+1]_72 chrII:12989549-12989629 0.00059 31_[+1]_41 chrI:2739262-2739342 0.00059 17_[+1]_55 chrIII:12895938-12896018 0.00062 35_[+1]_37 chrIII:12368471-12368551 0.00069 22_[+1]_50 chrIII:2961363-2961443 0.00069 35_[+1]_37 chrV:12331929-12332009 0.00074 24_[+1]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAAAAWT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARAAAAWT width=8 seqs=57 chrI:14968150-14968230 ( 51) AGAAAAAT 1 chrX:10924654-10924734 ( 61) AGAAAAAT 1 chrI:4209437-4209517 ( 3) AAAAAAAT 1 chrII:10163890-10163970 ( 43) AAAAAAAT 1 chrIII:880715-880795 ( 10) AAAAAAAT 1 chrIII:2988152-2988232 ( 43) AAAAAAAT 1 chrIII:13473962-13474042 ( 49) AAAAAAAT 1 chrIII:12368697-12368777 ( 17) AAAAAAAT 1 chrV:4963091-4963171 ( 10) AAAAAAAT 1 chrI:13284652-13284732 ( 65) AAAAAAAT 1 chrIV:9126875-9126955 ( 36) AAAAAAAT 1 chrI:2210203-2210283 ( 52) AAAAAAAT 1 chrV:14510297-14510377 ( 73) AAAAAAAT 1 chrIII:945906-945986 ( 48) AAAAAAAT 1 chrIV:4015386-4015466 ( 56) AAAAAAAT 1 chrX:7227192-7227272 ( 20) AGAAAATT 1 chrX:12693294-12693374 ( 71) AGAAAATT 1 chrII:2330698-2330778 ( 69) AGAAAATT 1 chrIV:12262706-12262786 ( 20) AAAAAATT 1 chrIV:13668192-13668272 ( 21) AAAAAATT 1 chrII:14651485-14651565 ( 10) AAAAAATT 1 chrV:2595580-2595660 ( 19) AAAAAATT 1 chrIII:2628462-2628542 ( 65) GGAAAAAT 1 chrI:2614251-2614331 ( 46) GGAAAAAT 1 chrIII:11387092-11387172 ( 71) GGAAAAAT 1 chrIV:184117-184197 ( 6) GGAAAAAT 1 chrIII:4491931-4492011 ( 62) GAAAAAAT 1 chrX:1615444-1615524 ( 17) AGAAAAAG 1 chrV:189445-189525 ( 55) AAAAAAAG 1 chrI:11770944-11771024 ( 16) AAAAAAAG 1 chrII:13013515-13013595 ( 41) AAAAAAAG 1 chrI:6288399-6288479 ( 51) AAAAAAAG 1 chrIII:5264329-5264409 ( 30) GGAAAATT 1 chrIV:1911781-1911861 ( 69) GGAAAATT 1 chrX:8603165-8603245 ( 65) GGAAAATT 1 chrI:4685357-4685437 ( 72) TGAAAAAT 1 chrII:9258332-9258412 ( 11) TGAAAAAT 1 chrI:1608013-1608093 ( 52) GGAAAATT 1 chrIII:2147170-2147250 ( 53) TGAAAAAT 1 chrIII:8674824-8674904 ( 65) GAAAAATT 1 chrIV:1913556-1913636 ( 73) TAAAAAAT 1 chrX:12169502-12169582 ( 57) AGAAAATG 1 chrIV:6978132-6978212 ( 11) AGAAAATG 1 chrIII:4194117-4194197 ( 50) AGAAAATG 1 chrI:11395840-11395920 ( 62) CGAAAAAT 1 chrX:3907816-3907896 ( 16) CAAAAAAT 1 chrII:11537740-11537820 ( 41) TGAAAATT 1 chrX:16403478-16403558 ( 49) GGAAAAAG 1 chrI:12010747-12010827 ( 11) TGAAAATT 1 chrIII:5188179-5188259 ( 63) CAAAAAAT 1 chrIII:8265951-8266031 ( 1) TAAAAATT 1 chrII:12989549-12989629 ( 32) GAAAAAAG 1 chrI:2739262-2739342 ( 18) TAAAAATT 1 chrIII:12895938-12896018 ( 36) CGAAAATT 1 chrIII:12368471-12368551 ( 23) TGAAAAAG 1 chrIII:2961363-2961443 ( 36) CAAAAATT 1 chrV:12331929-12332009 ( 25) TAAAAAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAAAAWT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.55676 E= 7.3e+000 90 -130 -5 -70 95 -1248 106 -1248 183 -1248 -1248 -1248 183 -1248 -1248 -1248 183 -1248 -1248 -1248 183 -1248 -1248 -1248 117 -1248 -1248 37 -1248 -1248 -5 147 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAAAAWT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 57 E= 7.3e+000 0.526316 0.087719 0.210526 0.175439 0.543860 0.000000 0.456140 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.631579 0.000000 0.000000 0.368421 0.000000 0.000000 0.210526 0.789474 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAAAAWT MEME-1 regular expression -------------------------------------------------------------------------------- [AG][AG]AAAA[AT][TG] -------------------------------------------------------------------------------- Time 9.03 secs. ******************************************************************************** ******************************************************************************** MOTIF CCACCACC MEME-2 width = 8 sites = 2 llr = 23 E-value = 3.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCACCACC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::a::a:: pos.-specific C aa:aa:aa probability G :::::::: matrix T :::::::: bits 2.2 ** ** ** 2.0 ** ** ** 1.8 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCACCACC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCACC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:4986208-4986288 19 8.02e-06 GCCAGCGTAC CCACCACC ACAACGGGGT chrI:14104012-14104092 39 8.02e-06 AGGATTCGGA CCACCACC TCCAGGAGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCACC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:4986208-4986288 8e-06 18_[+2]_54 chrI:14104012-14104092 8e-06 38_[+2]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCACC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCACCACC width=8 seqs=2 chrII:4986208-4986288 ( 19) CCACCACC 1 chrI:14104012-14104092 ( 39) CCACCACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCACC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 3.6e+004 -765 220 -765 -765 -765 220 -765 -765 182 -765 -765 -765 -765 220 -765 -765 -765 220 -765 -765 182 -765 -765 -765 -765 220 -765 -765 -765 220 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCACC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.6e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACCACC MEME-2 regular expression -------------------------------------------------------------------------------- CCACCACC -------------------------------------------------------------------------------- Time 12.92 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCGCAAT MEME-3 width = 8 sites = 10 llr = 103 E-value = 4.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCGCAAT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::a7: pos.-specific C :a7:a:3: probability G a:3a:::: matrix T :::::::a bits 2.2 ** ** 2.0 ** ** 1.8 ** *** * 1.5 ** *** * Relative 1.3 ****** * Entropy 1.1 ******** (14.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCCGCAAT consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCAAT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:189445-189525 29 1.07e-05 acggcgaGCC GCCGCAAT TTCAGCAATA chrII:8985687-8985767 16 1.07e-05 TGCTCAACAC GCCGCAAT GTCCCTCAAC chrX:13951301-13951381 1 1.07e-05 . GCCGCAAT ATTTGCCAGG chrIII:12895938-12896018 28 1.07e-05 ccgacacatt gccgcaat cgaaaatttc chrV:4513176-4513256 33 1.07e-05 TCAAACTTTA GCCGCAAT CGGATTGTTC chrIV:17103061-17103141 17 1.90e-05 ATTTTTCCGT GCCGCACT TGCAAAATTC chrIV:405484-405564 48 1.90e-05 cgggttccct gccgcact atatattcgg chrI:11526452-11526532 73 2.98e-05 TCGAATCGAC GCGGCAAT chrV:20740847-20740927 43 2.98e-05 Ccaggggtgg gcggcaat tgccattcgg chrX:812001-812081 73 3.82e-05 ttcttccgtc gcggcact -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCAAT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:189445-189525 1.1e-05 28_[+3]_44 chrII:8985687-8985767 1.1e-05 15_[+3]_57 chrX:13951301-13951381 1.1e-05 [+3]_72 chrIII:12895938-12896018 1.1e-05 27_[+3]_45 chrV:4513176-4513256 1.1e-05 32_[+3]_40 chrIV:17103061-17103141 1.9e-05 16_[+3]_56 chrIV:405484-405564 1.9e-05 47_[+3]_25 chrI:11526452-11526532 3e-05 72_[+3] chrV:20740847-20740927 3e-05 42_[+3]_30 chrX:812001-812081 3.8e-05 72_[+3] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCAAT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCGCAAT width=8 seqs=10 chrV:189445-189525 ( 29) GCCGCAAT 1 chrII:8985687-8985767 ( 16) GCCGCAAT 1 chrX:13951301-13951381 ( 1) GCCGCAAT 1 chrIII:12895938-12896018 ( 28) GCCGCAAT 1 chrV:4513176-4513256 ( 33) GCCGCAAT 1 chrIV:17103061-17103141 ( 17) GCCGCACT 1 chrIV:405484-405564 ( 48) GCCGCACT 1 chrI:11526452-11526532 ( 73) GCGGCAAT 1 chrV:20740847-20740927 ( 43) GCGGCAAT 1 chrX:812001-812081 ( 73) GCGGCACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCAAT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0846 E= 4.0e+003 -997 -997 220 -997 -997 221 -997 -997 -997 169 46 -997 -997 -997 220 -997 -997 221 -997 -997 183 -997 -997 -997 131 47 -997 -997 -997 -997 -997 181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCAAT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 4.0e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.700000 0.300000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.700000 0.300000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGCAAT MEME-3 regular expression -------------------------------------------------------------------------------- GC[CG]GCA[AC]T -------------------------------------------------------------------------------- Time 16.56 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCCCACA MEME-4 width = 8 sites = 2 llr = 23 E-value = 3.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCCCACA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::a:a pos.-specific C aaaaa:a: probability G :::::::: matrix T :::::::: bits 2.2 ***** * 2.0 ***** * 1.8 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCCCACA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCACA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:6154552-6154632 42 8.02e-06 CTCCTCTTCA CCCCCACA CACAAATCTT chrIII:1446906-1446986 36 8.02e-06 CCGCCTCTTC CCCCCACA CACGCCTCCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCACA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:6154552-6154632 8e-06 41_[+4]_31 chrIII:1446906-1446986 8e-06 35_[+4]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCACA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCCCACA width=8 seqs=2 chrI:6154552-6154632 ( 42) CCCCCACA 1 chrIII:1446906-1446986 ( 36) CCCCCACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCACA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 3.6e+004 -765 220 -765 -765 -765 220 -765 -765 -765 220 -765 -765 -765 220 -765 -765 -765 220 -765 -765 182 -765 -765 -765 -765 220 -765 -765 182 -765 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCACA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.6e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCCACA MEME-4 regular expression -------------------------------------------------------------------------------- CCCCCACA -------------------------------------------------------------------------------- Time 20.19 secs. ******************************************************************************** ******************************************************************************** MOTIF CCRCCGCC MEME-5 width = 8 sites = 2 llr = 23 E-value = 6.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCRCCGCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::5::::: pos.-specific C aa:aa:aa probability G ::5::a:: matrix T :::::::: bits 2.2 ** ***** 2.0 ** ***** 1.8 ** ***** 1.5 ** ***** Relative 1.3 ** ***** Entropy 1.1 ******** (16.5 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCACCGCC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRCCGCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:1054300-1054380 41 4.83e-06 CGTAACGAGG CCGCCGCC CGGCCAGCCG chrI:14104012-14104092 72 1.10e-05 AGCCTACGGA CCACCGCC A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRCCGCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:1054300-1054380 4.8e-06 40_[+5]_32 chrI:14104012-14104092 1.1e-05 71_[+5]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRCCGCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCRCCGCC width=8 seqs=2 chrIII:1054300-1054380 ( 41) CCGCCGCC 1 chrI:14104012-14104092 ( 72) CCACCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRCCGCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 6.0e+004 -765 220 -765 -765 -765 220 -765 -765 83 -765 119 -765 -765 220 -765 -765 -765 220 -765 -765 -765 -765 219 -765 -765 220 -765 -765 -765 220 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRCCGCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 6.0e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCRCCGCC MEME-5 regular expression -------------------------------------------------------------------------------- CC[AG]CCGCC -------------------------------------------------------------------------------- Time 23.80 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:7338376-7338456 9.72e-01 80 chrII:3340317-3340397 7.28e-01 80 chrIII:4459043-4459123 5.85e-01 80 chrIV:556188-556268 9.96e-01 80 chrI:6288399-6288479 5.06e-01 80 chrI:5350046-5350126 8.28e-01 80 chrV:2595580-2595660 4.78e-01 80 chrI:1736398-1736478 9.97e-01 80 chrV:19685790-19685870 1.41e-02 80 chrIII:4501299-4501379 9.99e-01 80 chrIII:11466493-11466573 9.99e-01 80 chrV:11767499-11767579 9.96e-01 80 chrI:14592384-14592464 9.99e-01 80 chrV:4513176-4513256 4.87e-02 32_[+3(1.07e-05)]_40 chrI:9357303-9357383 4.40e-01 80 chrIV:2154330-2154410 8.90e-01 80 chrI:14718569-14718649 9.03e-01 80 chrI:9358723-9358803 9.31e-01 80 chrI:9906028-9906108 9.53e-01 80 chrIII:5188179-5188259 8.07e-02 80 chrIV:13191897-13191977 9.65e-01 80 chrIII:1446906-1446986 3.46e-04 35_[+4(8.02e-06)]_37 chrX:14116710-14116790 9.71e-01 80 chrI:2739262-2739342 5.18e-01 80 chrIV:8083275-8083355 7.11e-01 80 chrIII:12895938-12896018 3.94e-03 27_[+3(1.07e-05)]_45 chrII:11975783-11975863 8.73e-01 80 chrX:11041135-11041215 9.90e-01 80 chrIV:3299393-3299473 4.63e-04 29_[+2(8.02e-06)]_19_[+2(8.02e-06)]_\ 16 chrIV:405484-405564 3.33e-02 47_[+3(1.90e-05)]_25 chrII:2340147-2340227 7.24e-01 80 chrIII:4276622-4276702 9.17e-01 80 chrIV:17103061-17103141 5.12e-02 16_[+3(1.90e-05)]_56 chrII:14651485-14651565 3.45e-01 80 chrI:12010747-12010827 2.02e-01 80 chrX:1615444-1615524 1.90e-01 80 chrX:17288556-17288636 9.35e-01 80 chrI:11085278-11085358 9.65e-01 80 chrIV:10866345-10866425 5.92e-01 80 chrIV:4015386-4015466 2.00e-01 55_[+1(6.98e-05)]_17 chrI:7038888-7038968 3.21e-01 80 chrX:2429907-2429987 5.53e-01 80 chrV:1582667-1582747 6.08e-01 80 chrI:5874034-5874114 4.23e-01 80 chrV:20740847-20740927 2.13e-01 42_[+3(2.98e-05)]_30 chrIII:945906-945986 3.04e-01 47_[+1(6.98e-05)]_25 chrX:10924654-10924734 2.65e-01 60_[+1(3.05e-05)]_12 chrIII:2147170-2147250 2.74e-01 80 chrI:3243402-3243482 4.43e-01 80 chrV:2186114-2186194 7.12e-02 80 chrI:3242270-3242350 5.77e-01 80 chrX:14583272-14583352 8.28e-01 80 chrII:10999760-10999840 8.42e-01 80 chrX:10352875-10352955 6.50e-03 80 chrX:13951301-13951381 1.43e-02 [+3(1.07e-05)]_72 chrI:818557-818637 5.94e-01 80 chrIV:13668192-13668272 3.58e-01 80 chrI:11089401-11089481 2.21e-04 48_[+2(8.02e-06)]_24 chrI:7689495-7689575 8.29e-01 80 chrIII:4447684-4447764 8.91e-01 80 chrI:1608013-1608093 6.08e-01 80 chrIII:11614067-11614147 1.24e-02 67_[+4(4.90e-05)]_5 chrV:4166333-4166413 8.49e-01 80 chrI:14968150-14968230 2.32e-01 50_[+1(3.05e-05)]_22 chrIV:1918323-1918403 8.25e-01 80 chrII:8898580-8898660 9.25e-01 80 chrIII:11007274-11007354 7.46e-01 80 chrX:16403478-16403558 6.91e-01 80 chrIV:184117-184197 4.21e-01 80 chrII:10999532-10999612 8.85e-01 80 chrII:8985687-8985767 2.46e-02 15_[+3(1.07e-05)]_57 chrX:12505738-12505818 7.47e-01 80 chrIII:6329627-6329707 8.04e-01 80 chrX:16967906-16967986 7.11e-01 80 chrV:671726-671806 9.94e-01 80 chrI:8767411-8767491 3.38e-01 80 chrX:2539715-2539795 9.49e-01 80 chrIII:6589061-6589141 9.75e-01 80 chrIV:3766780-3766860 8.32e-01 80 chrV:16027942-16028022 8.34e-01 80 chrII:4153052-4153132 6.81e-03 10_[+2(4.90e-05)]_62 chrIII:11387092-11387172 6.66e-02 80 chrIV:13892733-13892813 6.51e-01 80 chrI:12207247-12207327 9.61e-01 80 chrX:8159548-8159628 1.40e-05 48_[+5(4.83e-06)]_24 chrV:5401864-5401944 4.84e-01 80 chrII:4589229-4589309 2.15e-01 80 chrII:2445337-2445417 3.15e-03 1_[+4(4.90e-05)]_71 chrV:17743950-17744030 1.00e+00 80 chrII:1674194-1674274 8.03e-01 80 chrII:3991708-3991788 7.47e-01 80 chrIII:9225179-9225259 8.26e-01 80 chrII:11537740-11537820 2.12e-02 80 chrI:13508969-13509049 9.97e-01 80 chrX:1514819-1514899 7.39e-01 80 chrIII:8465925-8466005 3.95e-01 80 chrIII:8804931-8805011 7.58e-03 80 chrV:1860578-1860658 8.17e-01 80 chrI:13402223-13402303 8.10e-01 80 chrI:446835-446915 8.74e-01 80 chrIV:12553185-12553265 5.31e-01 80 chrIV:12546858-12546938 9.91e-01 80 chrIV:3743966-3744046 1.68e-01 80 chrV:4734122-4734202 3.04e-04 29_[+2(8.02e-06)]_43 chrII:167827-167907 9.93e-01 80 chrV:14510297-14510377 3.23e-02 72_[+1(6.98e-05)] chrI:4689486-4689566 1.00e+00 80 chrIII:13780938-13781018 4.10e-01 80 chrV:12038512-12038592 6.82e-01 80 chrIV:12262706-12262786 2.18e-01 80 chrIV:1913556-1913636 5.72e-01 80 chrIV:1903771-1903851 3.30e-03 80 chrI:11791052-11791132 9.48e-01 80 chrI:2210203-2210283 2.08e-01 51_[+1(6.98e-05)]_21 chrV:12510424-12510504 1.00e+00 80 chrII:13904311-13904391 7.57e-01 80 chrII:12968590-12968670 2.29e-01 80 chrIII:8674824-8674904 2.07e-01 80 chrV:4507228-4507308 3.28e-01 80 chrI:10433018-10433098 9.53e-01 80 chrIV:579907-579987 4.34e-01 80 chrX:3907816-3907896 6.91e-01 80 chrIV:3166483-3166563 9.69e-01 80 chrIV:6887235-6887315 8.13e-01 80 chrIII:2961363-2961443 8.03e-03 80 chrIII:7734736-7734816 6.41e-01 80 chrII:12989549-12989629 2.82e-01 80 chrIV:3890470-3890550 9.73e-01 80 chrX:5823258-5823338 5.19e-01 80 chrII:13013515-13013595 4.46e-01 80 chrIII:3302910-3302990 9.84e-01 80 chrIII:8805844-8805924 9.14e-01 80 chrII:14079534-14079614 3.98e-01 80 chrIII:13658075-13658155 2.57e-01 80 chrI:14137935-14138015 4.12e-01 80 chrI:2836275-2836355 9.08e-01 80 chrII:1734699-1734779 1.40e-01 80 chrIV:9126875-9126955 1.44e-01 35_[+1(6.98e-05)]_37 chrX:8803180-8803260 9.97e-01 80 chrV:12353072-12353152 5.08e-02 80 chrI:549893-549973 9.42e-01 80 chrIII:2978637-2978717 8.52e-03 80 chrI:11770944-11771024 5.16e-03 80 chrI:13284652-13284732 3.28e-01 64_[+1(6.98e-05)]_8 chrI:14526654-14526734 9.39e-01 80 chrX:14877948-14878028 1.00e+00 80 chrIV:11726087-11726167 8.67e-01 80 chrII:9295268-9295348 8.76e-01 80 chrI:13842768-13842848 9.99e-01 80 chrI:8905553-8905633 9.64e-01 80 chrIII:4491931-4492011 3.30e-01 80 chrV:3758793-3758873 4.49e-01 80 chrIII:10673205-10673285 5.41e-01 80 chrI:14048835-14048915 7.86e-01 80 chrII:11589380-11589460 9.94e-01 80 chrIII:12368471-12368551 1.68e-03 80 chrIII:9948172-9948252 5.81e-01 80 chrI:14104012-14104092 3.98e-05 38_[+2(8.02e-06)]_25_[+5(1.10e-05)]_\ 1 chrI:14391730-14391810 3.42e-03 80 chrII:9258332-9258412 6.54e-01 80 chrIV:4760111-4760191 9.45e-01 80 chrI:12173828-12173908 9.93e-01 80 chrIII:4194117-4194197 5.61e-01 80 chrIV:6121589-6121669 4.50e-01 80 chrI:4685357-4685437 5.49e-01 80 chrV:13159400-13159480 5.43e-03 80 chrII:13932977-13933057 4.21e-01 80 chrIV:9207260-9207340 5.60e-02 80 chrIII:13779506-13779586 9.43e-01 80 chrII:2330698-2330778 3.58e-01 80 chrIII:8301160-8301240 9.52e-01 80 chrII:4986208-4986288 4.11e-04 18_[+2(8.02e-06)]_54 chrII:9258618-9258698 8.92e-01 80 chrII:11466673-11466753 9.60e-01 80 chrIII:12840065-12840145 5.98e-01 80 chrIII:12127318-12127398 8.97e-01 80 chrX:434003-434083 9.71e-01 80 chrV:8247509-8247589 9.40e-01 80 chrIV:8902583-8902663 5.87e-02 80 chrX:4962828-4962908 9.22e-01 80 chrIV:8334516-8334596 8.81e-02 80 chrV:4963091-4963171 1.93e-01 9_[+1(6.98e-05)]_1_[+1(3.05e-05)]_\ 54 chrII:11614749-11614829 8.19e-01 80 chrI:6154552-6154632 3.74e-03 41_[+4(8.02e-06)]_31 chrV:13814984-13815064 9.78e-01 80 chrI:11934642-11934722 1.00e+00 80 chrIV:3337502-3337582 2.38e-04 59_[+5(2.21e-05)]_13 chrI:11395840-11395920 2.91e-01 80 chrV:6026478-6026558 8.04e-01 80 chrI:6668517-6668597 9.94e-01 80 chrIV:7487757-7487837 9.72e-01 80 chrV:6835755-6835835 9.65e-01 80 chrX:812001-812081 4.49e-02 72_[+3(3.82e-05)] chrX:2843766-2843846 1.06e-01 80 chrII:3437430-3437510 9.35e-01 80 chrI:2614251-2614331 3.66e-01 80 chrI:7706142-7706222 4.35e-01 80 chrII:1226542-1226622 9.57e-01 80 chrI:13645036-13645116 9.24e-01 80 chrIII:10672051-10672131 1.33e-01 80 chrIV:1204574-1204654 1.32e-01 80 chrII:15230442-15230522 3.36e-02 80 chrV:13113638-13113718 8.57e-01 80 chrX:12693294-12693374 1.77e-01 80 chrI:12504525-12504605 5.32e-01 80 chrIII:1054300-1054380 1.09e-03 40_[+5(4.83e-06)]_32 chrII:8467215-8467295 8.92e-01 80 chrIII:13581806-13581886 9.96e-01 80 chrIII:11458070-11458150 8.13e-01 80 chrIII:12368697-12368777 3.88e-01 16_[+1(6.98e-05)]_56 chrIII:13473962-13474042 3.12e-01 48_[+1(6.98e-05)]_24 chrIV:6978132-6978212 8.61e-02 80 chrI:2735116-2735196 1.28e-01 80 chrIII:12608371-12608451 1.95e-01 80 chrIII:11935980-11936060 2.43e-03 80 chrX:12169502-12169582 5.84e-01 80 chrI:14730801-14730881 1.78e-01 80 chrIII:2628462-2628542 1.34e-01 80 chrIII:8265951-8266031 7.30e-01 80 chrX:4617977-4618057 8.19e-01 80 chrX:8603165-8603245 4.94e-01 80 chrI:2829306-2829386 9.95e-01 80 chrIII:2988152-2988232 2.51e-01 42_[+1(6.98e-05)]_30 chrII:1228662-1228742 5.88e-01 80 chrV:205739-205819 3.73e-01 80 chrX:6928756-6928836 4.74e-01 80 chrIV:1911781-1911861 2.31e-03 80 chrI:14478233-14478313 9.97e-01 80 chrX:10396943-10397023 5.20e-01 80 chrII:13216486-13216566 9.98e-01 80 chrX:8925613-8925693 6.45e-01 80 chrV:189445-189525 1.78e-05 28_[+3(1.07e-05)]_44 chrIII:5264329-5264409 5.83e-01 80 chrI:814504-814584 1.00e+00 80 chrIV:3258218-3258298 9.97e-01 80 chrIII:1165714-1165794 8.71e-01 80 chrV:12331929-12332009 5.30e-02 80 chrI:11526452-11526532 2.14e-02 72_[+3(2.98e-05)] chrIV:14621638-14621718 9.24e-01 80 chrIV:1358372-1358452 9.64e-01 80 chrI:11583989-11584069 7.38e-01 80 chrV:5284556-5284636 9.91e-01 80 chrX:12692292-12692372 6.07e-02 80 chrI:11670231-11670311 9.12e-01 80 chrX:8151576-8151656 1.73e-01 80 chrIII:880715-880795 1.45e-01 9_[+1(6.98e-05)]_63 chrII:10163890-10163970 1.73e-02 22_[+1(6.98e-05)]_12_[+1(6.98e-05)]_\ 30 chrIII:5027477-5027557 1.62e-01 80 chrI:4209437-4209517 2.45e-01 2_[+1(6.98e-05)]_70 chrX:7227192-7227272 1.56e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************