******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-82.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:6658944-6659024 1.0000 80 chrI:12966450-12966530 1.0000 80 chrV:6656818-6656898 1.0000 80 chrIV:9196893-9196973 1.0000 80 chrI:6542023-6542103 1.0000 80 chrII:2748402-2748482 1.0000 80 chrIII:10905281-10905361 1.0000 80 chrIV:15696901-15696981 1.0000 80 chrV:9273680-9273760 1.0000 80 chrIV:4093281-4093361 1.0000 80 chrIV:6809949-6810029 1.0000 80 chrIII:5640030-5640110 1.0000 80 chrII:8796586-8796666 1.0000 80 chrX:16930971-16931051 1.0000 80 chrIV:1070491-1070571 1.0000 80 chrIV:11524369-11524449 1.0000 80 chrII:2280317-2280397 1.0000 80 chrV:20829032-20829112 1.0000 80 chrX:1909556-1909636 1.0000 80 chrIV:255592-255672 1.0000 80 chrI:6835329-6835409 1.0000 80 chrX:17181384-17181464 1.0000 80 chrIV:1274716-1274796 1.0000 80 chrV:15136902-15136982 1.0000 80 chrIV:2676422-2676502 1.0000 80 chrI:12206679-12206759 1.0000 80 chrV:7237285-7237365 1.0000 80 chrIV:6839121-6839201 1.0000 80 chrII:7642235-7642315 1.0000 80 chrIV:7623865-7623945 1.0000 80 chrIV:12372042-12372122 1.0000 80 chrII:24607-24687 1.0000 80 chrX:4145668-4145748 1.0000 80 chrV:18079313-18079393 1.0000 80 chrIV:3338835-3338915 1.0000 80 chrV:4827163-4827243 1.0000 80 chrII:4999315-4999395 1.0000 80 chrV:14366644-14366724 1.0000 80 chrX:10576591-10576671 1.0000 80 chrX:2971583-2971663 1.0000 80 chrX:17420168-17420248 1.0000 80 chrII:13157121-13157201 1.0000 80 chrI:9422350-9422430 1.0000 80 chrX:4395610-4395690 1.0000 80 chrI:12179547-12179627 1.0000 80 chrX:13144718-13144798 1.0000 80 chrX:16024838-16024918 1.0000 80 chrI:9343853-9343933 1.0000 80 chrI:12575777-12575857 1.0000 80 chrI:13951773-13951853 1.0000 80 chrII:13335237-13335317 1.0000 80 chrIII:1950337-1950417 1.0000 80 chrIV:6919489-6919569 1.0000 80 chrI:12728070-12728150 1.0000 80 chrIII:9546126-9546206 1.0000 80 chrIII:1785916-1785996 1.0000 80 chrX:9337962-9338042 1.0000 80 chrI:6215571-6215651 1.0000 80 chrX:15535446-15535526 1.0000 80 chrX:1856352-1856432 1.0000 80 chrIII:10634179-10634259 1.0000 80 chrII:1247037-1247117 1.0000 80 chrX:4458044-4458124 1.0000 80 chrX:3116356-3116436 1.0000 80 chrV:14136220-14136300 1.0000 80 chrIII:10284368-10284448 1.0000 80 chrIV:12724796-12724876 1.0000 80 chrX:8021832-8021912 1.0000 80 chrIII:11007871-11007951 1.0000 80 chrIV:11809876-11809956 1.0000 80 chrIV:7402203-7402283 1.0000 80 chrIV:1709899-1709979 1.0000 80 chrIV:10503874-10503954 1.0000 80 chrI:6314848-6314928 1.0000 80 chrV:14200262-14200342 1.0000 80 chrII:14383780-14383860 1.0000 80 chrV:16965807-16965887 1.0000 80 chrIII:8130507-8130587 1.0000 80 chrIV:8379436-8379516 1.0000 80 chrIII:2528776-2528856 1.0000 80 chrX:11473630-11473710 1.0000 80 chrIV:3520556-3520636 1.0000 80 chrII:156070-156150 1.0000 80 chrIV:8432284-8432364 1.0000 80 chrI:9076258-9076338 1.0000 80 chrV:11239334-11239414 1.0000 80 chrIII:5706411-5706491 1.0000 80 chrIII:11142264-11142344 1.0000 80 chrX:13396728-13396808 1.0000 80 chrI:12920702-12920782 1.0000 80 chrX:14640135-14640215 1.0000 80 chrI:9097763-9097843 1.0000 80 chrI:2291218-2291298 1.0000 80 chrII:4044506-4044586 1.0000 80 chrX:1323199-1323279 1.0000 80 chrV:11228834-11228914 1.0000 80 chrIV:3384701-3384781 1.0000 80 chrIV:10734660-10734740 1.0000 80 chrV:7776273-7776353 1.0000 80 chrIII:25698-25778 1.0000 80 chrX:10419898-10419978 1.0000 80 chrIV:7791348-7791428 1.0000 80 chrX:11467575-11467655 1.0000 80 chrII:6347863-6347943 1.0000 80 chrI:11934296-11934376 1.0000 80 chrV:17921554-17921634 1.0000 80 chrIII:12599061-12599141 1.0000 80 chrII:5725261-5725341 1.0000 80 chrV:15189709-15189789 1.0000 80 chrX:4190727-4190807 1.0000 80 chrX:2364860-2364940 1.0000 80 chrX:17184496-17184576 1.0000 80 chrIV:11522690-11522770 1.0000 80 chrI:2996345-2996425 1.0000 80 chrX:4960641-4960721 1.0000 80 chrIV:8587188-8587268 1.0000 80 chrX:17544488-17544568 1.0000 80 chrIII:9780772-9780852 1.0000 80 chrX:2237565-2237645 1.0000 80 chrV:18723763-18723843 1.0000 80 chrIV:11566311-11566391 1.0000 80 chrI:5699150-5699230 1.0000 80 chrV:14347376-14347456 1.0000 80 chrIII:4018213-4018293 1.0000 80 chrIII:11657349-11657429 1.0000 80 chrX:15189487-15189567 1.0000 80 chrIII:1080714-1080794 1.0000 80 chrX:6840989-6841069 1.0000 80 chrI:1481712-1481792 1.0000 80 chrI:12524456-12524536 1.0000 80 chrX:1389492-1389572 1.0000 80 chrX:14016947-14017027 1.0000 80 chrIII:9631487-9631567 1.0000 80 chrX:2536589-2536669 1.0000 80 chrIII:8797255-8797335 1.0000 80 chrIV:11149737-11149817 1.0000 80 chrX:15607013-15607093 1.0000 80 chrV:18990413-18990493 1.0000 80 chrIV:14464238-14464318 1.0000 80 chrV:10715907-10715987 1.0000 80 chrIV:2177716-2177796 1.0000 80 chrIII:5855954-5856034 1.0000 80 chrI:9113128-9113208 1.0000 80 chrI:14945808-14945888 1.0000 80 chrIII:13466416-13466496 1.0000 80 chrI:9380332-9380412 1.0000 80 chrV:15766349-15766429 1.0000 80 chrII:9646268-9646348 1.0000 80 chrI:2401628-2401708 1.0000 80 chrII:15010583-15010663 1.0000 80 chrX:2688710-2688790 1.0000 80 chrX:4389036-4389116 1.0000 80 chrV:15511768-15511848 1.0000 80 chrV:6879628-6879708 1.0000 80 chrV:2600692-2600772 1.0000 80 chrII:13872647-13872727 1.0000 80 chrIII:3068069-3068149 1.0000 80 chrIII:6375151-6375231 1.0000 80 chrI:12995747-12995827 1.0000 80 chrX:14841174-14841254 1.0000 80 chrIII:6608298-6608378 1.0000 80 chrX:9999920-10000000 1.0000 80 chrII:10548971-10549051 1.0000 80 chrV:1474671-1474751 1.0000 80 chrIV:16492432-16492512 1.0000 80 chrI:15034054-15034134 1.0000 80 chrX:7181773-7181853 1.0000 80 chrIII:5785763-5785843 1.0000 80 chrI:382491-382571 1.0000 80 chrX:10637529-10637609 1.0000 80 chrII:7945309-7945389 1.0000 80 chrI:7021441-7021521 1.0000 80 chrX:15607706-15607786 1.0000 80 chrI:10553916-10553996 1.0000 80 chrX:5729234-5729314 1.0000 80 chrII:13447768-13447848 1.0000 80 chrII:6250924-6251004 1.0000 80 chrIV:4445845-4445925 1.0000 80 chrIII:6421167-6421247 1.0000 80 chrIII:4754315-4754395 1.0000 80 chrII:411010-411090 1.0000 80 chrIV:14767868-14767948 1.0000 80 chrIV:10919396-10919476 1.0000 80 chrI:13514328-13514408 1.0000 80 chrI:1067099-1067179 1.0000 80 chrII:13976322-13976402 1.0000 80 chrV:773389-773469 1.0000 80 chrX:14312608-14312688 1.0000 80 chrI:4584828-4584908 1.0000 80 chrIII:3863055-3863135 1.0000 80 chrI:8816549-8816629 1.0000 80 chrI:13337274-13337354 1.0000 80 chrIII:1926608-1926688 1.0000 80 chrII:11224085-11224165 1.0000 80 chrI:4270522-4270602 1.0000 80 chrIII:5228112-5228192 1.0000 80 chrV:10894781-10894861 1.0000 80 chrIV:5657287-5657367 1.0000 80 chrIV:15471557-15471637 1.0000 80 chrII:9113036-9113116 1.0000 80 chrX:17513707-17513787 1.0000 80 chrV:10965640-10965720 1.0000 80 chrX:14146907-14146987 1.0000 80 chrX:16298252-16298332 1.0000 80 chrII:10872657-10872737 1.0000 80 chrX:1454481-1454561 1.0000 80 chrI:8813389-8813469 1.0000 80 chrV:6053443-6053523 1.0000 80 chrX:16147913-16147993 1.0000 80 chrIV:4390634-4390714 1.0000 80 chrIII:7208059-7208139 1.0000 80 chrX:8368300-8368380 1.0000 80 chrIV:1420302-1420382 1.0000 80 chrI:3516468-3516548 1.0000 80 chrV:12728401-12728481 1.0000 80 chrIV:8432911-8432991 1.0000 80 chrIII:9456246-9456326 1.0000 80 chrI:13653911-13653991 1.0000 80 chrV:13565361-13565441 1.0000 80 chrIII:7179800-7179880 1.0000 80 chrIV:7580385-7580465 1.0000 80 chrIII:13463068-13463148 1.0000 80 chrX:10568547-10568627 1.0000 80 chrIV:15472528-15472608 1.0000 80 chrX:7334525-7334605 1.0000 80 chrV:13086110-13086190 1.0000 80 chrX:14708340-14708420 1.0000 80 chrX:2242926-2243006 1.0000 80 chrIV:16865680-16865760 1.0000 80 chrI:9163478-9163558 1.0000 80 chrII:11747101-11747181 1.0000 80 chrX:7068520-7068600 1.0000 80 chrI:1873922-1874002 1.0000 80 chrI:6799635-6799715 1.0000 80 chrX:13514549-13514629 1.0000 80 chrIV:2725974-2726054 1.0000 80 chrI:13756494-13756574 1.0000 80 chrII:11874830-11874910 1.0000 80 chrII:10868932-10869012 1.0000 80 chrV:11610624-11610704 1.0000 80 chrV:13715407-13715487 1.0000 80 chrI:8426840-8426920 1.0000 80 chrIII:10707173-10707253 1.0000 80 chrIII:8164012-8164092 1.0000 80 chrIV:6790572-6790652 1.0000 80 chrII:8185159-8185239 1.0000 80 chrV:10536984-10537064 1.0000 80 chrIII:13061288-13061368 1.0000 80 chrIII:8447123-8447203 1.0000 80 chrV:5917894-5917974 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ceh-82/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-82.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.247 C 0.254 G 0.251 T 0.248 Background letter frequencies (from file dataset with add-one prior applied): A 0.247 C 0.254 G 0.251 T 0.248 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AGACGCAG MEME-1 width = 8 sites = 30 llr = 296 E-value = 3.2e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGACGCAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A a:a11:9: pos.-specific C :::9:9:: probability G :a::911a matrix T :::::::: bits 2.0 * * * 1.8 *** * 1.6 ***** ** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (14.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGACGCAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:15472528-15472608 56 1.54e-05 AGAGAGTACG AGACGCAG AAATCGTTGG chrIV:8432911-8432991 38 1.54e-05 AACCAGTCAG AGACGCAG ACATTGCTCT chrI:8813389-8813469 54 1.54e-05 ACAAACGTGG AGACGCAG ACGATTGTAC chrIV:15471557-15471637 57 1.54e-05 AGAGAGTACG AGACGCAG AGATCGTTGG chrIV:5657287-5657367 13 1.54e-05 TCCAATGGGA AGACGCAG AGGTAAAAAA chrIII:6421167-6421247 19 1.54e-05 GGTTTGATAG AGACGCAG GCATCGACCG chrX:10637529-10637609 48 1.54e-05 TGAGTGGAAG AGACGCAG AGTGCAGCAA chrIV:16492432-16492512 48 1.54e-05 ATCCGTGTAG AGACGCAG AATGTTCGGA chrII:13872647-13872727 30 1.54e-05 CAAAACGAGG AGACGCAG AGTTGGGTCT chrX:2237565-2237645 47 1.54e-05 CGGCTAGTAG AGACGCAG ATAGAAAAGG chrIV:11522690-11522770 7 1.54e-05 ACTCAT AGACGCAG ACATTCTCTG chrX:4190727-4190807 28 1.54e-05 AAGAGACGGC AGACGCAG TAAGAAACGG chrI:2291218-2291298 43 1.54e-05 AATACAAAAG AGACGCAG ACGCGGCACC chrV:16965807-16965887 41 1.54e-05 GGAAAGGTGG AGACGCAG ACGAGAAAGG chrX:4458044-4458124 69 1.54e-05 GTCACTGCTG AGACGCAG AAAC chrII:13335237-13335317 67 1.54e-05 aaacgcagag agacgcag aCAACG chrI:9422350-9422430 1 1.54e-05 . AGACGCAG ACATATGTCG chrIV:1070491-1070571 51 1.54e-05 AACCAGCATG AGACGCAG AGAGTCGCAG chrIV:6809949-6810029 36 1.54e-05 AAGCCTAAAT AGACGCAG GCAGTAAAAG chrII:2748402-2748482 30 1.54e-05 CTGAAAAAAG AGACGCAG ACAGCTTGCG chrIII:9456246-9456326 30 3.06e-05 TGAAAATAAG AGACGGAG GCGCATGATA chrV:7776273-7776353 16 3.06e-05 GTAGCGGCGA AGACGGAG AAAAAACGGC chrIV:7402203-7402283 3 3.06e-05 AG AGACGGAG AGAGATGGAG chrI:13756494-13756574 46 7.63e-05 AGAGAGCGAG AGACACAG AGACTTGCTG chrIII:7208059-7208139 34 7.63e-05 CACCGTAGTC AGACGCGG GTCTCGCCGC chrV:6053443-6053523 13 7.63e-05 AGATGAATAG AGACGCGG AGATGTGCAC chrI:9380332-9380412 35 7.63e-05 GGCAGGGAGG AGAAGCAG AGCGACGAGA chrV:9273680-9273760 20 7.63e-05 GAGTGCGTGG AGACACAG ATACACGCTC chrIV:9196893-9196973 57 7.63e-05 GGGAAGCCGC AGAAGCAG CAGCAGTCGT chrV:13565361-13565441 63 9.14e-05 GGAAAGTGAG AAACGCAG AGAAAAAGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:15472528-15472608 1.5e-05 55_[+1]_17 chrIV:8432911-8432991 1.5e-05 37_[+1]_35 chrI:8813389-8813469 1.5e-05 53_[+1]_19 chrIV:15471557-15471637 1.5e-05 56_[+1]_16 chrIV:5657287-5657367 1.5e-05 12_[+1]_60 chrIII:6421167-6421247 1.5e-05 18_[+1]_54 chrX:10637529-10637609 1.5e-05 47_[+1]_25 chrIV:16492432-16492512 1.5e-05 47_[+1]_25 chrII:13872647-13872727 1.5e-05 29_[+1]_43 chrX:2237565-2237645 1.5e-05 46_[+1]_26 chrIV:11522690-11522770 1.5e-05 6_[+1]_66 chrX:4190727-4190807 1.5e-05 27_[+1]_45 chrI:2291218-2291298 1.5e-05 42_[+1]_30 chrV:16965807-16965887 1.5e-05 40_[+1]_32 chrX:4458044-4458124 1.5e-05 68_[+1]_4 chrII:13335237-13335317 1.5e-05 66_[+1]_6 chrI:9422350-9422430 1.5e-05 [+1]_72 chrIV:1070491-1070571 1.5e-05 50_[+1]_22 chrIV:6809949-6810029 1.5e-05 35_[+1]_37 chrII:2748402-2748482 1.5e-05 29_[+1]_43 chrIII:9456246-9456326 3.1e-05 29_[+1]_43 chrV:7776273-7776353 3.1e-05 15_[+1]_57 chrIV:7402203-7402283 3.1e-05 2_[+1]_70 chrI:13756494-13756574 7.6e-05 45_[+1]_27 chrIII:7208059-7208139 7.6e-05 33_[+1]_39 chrV:6053443-6053523 7.6e-05 12_[+1]_60 chrI:9380332-9380412 7.6e-05 34_[+1]_38 chrV:9273680-9273760 7.6e-05 19_[+1]_53 chrIV:9196893-9196973 7.6e-05 56_[+1]_16 chrV:13565361-13565441 9.1e-05 62_[+1]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGACGCAG width=8 seqs=30 chrIV:15472528-15472608 ( 56) AGACGCAG 1 chrIV:8432911-8432991 ( 38) AGACGCAG 1 chrI:8813389-8813469 ( 54) AGACGCAG 1 chrIV:15471557-15471637 ( 57) AGACGCAG 1 chrIV:5657287-5657367 ( 13) AGACGCAG 1 chrIII:6421167-6421247 ( 19) AGACGCAG 1 chrX:10637529-10637609 ( 48) AGACGCAG 1 chrIV:16492432-16492512 ( 48) AGACGCAG 1 chrII:13872647-13872727 ( 30) AGACGCAG 1 chrX:2237565-2237645 ( 47) AGACGCAG 1 chrIV:11522690-11522770 ( 7) AGACGCAG 1 chrX:4190727-4190807 ( 28) AGACGCAG 1 chrI:2291218-2291298 ( 43) AGACGCAG 1 chrV:16965807-16965887 ( 41) AGACGCAG 1 chrX:4458044-4458124 ( 69) AGACGCAG 1 chrII:13335237-13335317 ( 67) AGACGCAG 1 chrI:9422350-9422430 ( 1) AGACGCAG 1 chrIV:1070491-1070571 ( 51) AGACGCAG 1 chrIV:6809949-6810029 ( 36) AGACGCAG 1 chrII:2748402-2748482 ( 30) AGACGCAG 1 chrIII:9456246-9456326 ( 30) AGACGGAG 1 chrV:7776273-7776353 ( 16) AGACGGAG 1 chrIV:7402203-7402283 ( 3) AGACGGAG 1 chrI:13756494-13756574 ( 46) AGACACAG 1 chrIII:7208059-7208139 ( 34) AGACGCGG 1 chrV:6053443-6053523 ( 13) AGACGCGG 1 chrI:9380332-9380412 ( 35) AGAAGCAG 1 chrV:9273680-9273760 ( 20) AGACACAG 1 chrIV:9196893-9196973 ( 57) AGAAGCAG 1 chrV:13565361-13565441 ( 63) AAACGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.92146 E= 3.2e-019 202 -1155 -1155 -1155 -289 -1155 194 -1155 202 -1155 -1155 -1155 -189 188 -1155 -1155 -189 -1155 189 -1155 -1155 183 -133 -1155 192 -1155 -191 -1155 -1155 -1155 199 -1155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 3.2e-019 1.000000 0.000000 0.000000 0.000000 0.033333 0.000000 0.966667 0.000000 1.000000 0.000000 0.000000 0.000000 0.066667 0.933333 0.000000 0.000000 0.066667 0.000000 0.933333 0.000000 0.000000 0.900000 0.100000 0.000000 0.933333 0.000000 0.066667 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-1 regular expression -------------------------------------------------------------------------------- AGACGCAG -------------------------------------------------------------------------------- Time 5.52 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTBYSTC MEME-2 width = 8 sites = 62 llr = 492 E-value = 1.8e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTBYSTC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::1:: pos.-specific C :8:364:a probability G :::4:6:: matrix T a2a24:a: bits 2.0 * * ** 1.8 * * ** 1.6 * * ** 1.4 * * ** Relative 1.2 *** ** Entropy 1.0 *** * ** (11.4 bits) 0.8 *** **** 0.6 *** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTGCGTC consensus CTC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTBYSTC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:13061288-13061368 50 1.57e-05 TGTCAAGCTA TCTGCGTC TCTGTCGTTG chrII:9113036-9113116 6 1.57e-05 GTCTA TCTGCGTC TATGGATGTC chrV:773389-773469 28 1.57e-05 GATTATTTTC TCTGCGTC TCTCTCCTTC chrI:13514328-13514408 46 1.57e-05 GCGTCAACTC TCTGCGTC TCTACTCTCT chrIV:14767868-14767948 18 1.57e-05 GCTTGCATAC TCTGCGTC TCGTCTTTTT chrIII:6421167-6421247 55 1.57e-05 GCCCTCACTG TCTGCGTC TCCACGGCGT chrII:6250924-6251004 27 1.57e-05 TCTGCGCCTC TCTGCGTC TTGCATTGCC chrII:10548971-10549051 15 1.57e-05 GGCTTGAGTC TCTGCGTC TCCTGCCTAA chrX:14016947-14017027 19 1.57e-05 TCTTCGCTTC TCTGCGTC GTTTTATTCA chrIII:11657349-11657429 58 1.57e-05 TGATGGACTG TCTGCGTC TCTCCATTTT chrI:5699150-5699230 13 1.57e-05 TGCCAAACTA TCTGCGTC TTTCTCTTGT chrX:17184496-17184576 70 1.57e-05 TGTCGAACCG TCTGCGTC TCT chrV:17921554-17921634 47 1.57e-05 TAATTTCATG TCTGCGTC TCTTCTCTCT chrI:11934296-11934376 28 1.57e-05 CTTCTGTGTG TCTGCGTC TCTTCAGTTC chrIII:25698-25778 55 1.57e-05 TCCCCGCATC TCTGCGTC TCTCCCCCCT chrIV:3384701-3384781 8 1.57e-05 CTAACCG TCTGCGTC TCCGTCTCAT chrX:1323199-1323279 33 1.57e-05 AACCTAGTGT TCTGCGTC TCTTACACAA chrIII:11007871-11007951 9 1.57e-05 ACGAATTG TCTGCGTC TCCACTCTCT chrIV:6919489-6919569 58 1.57e-05 ACTCGCACTT TCTGCGTC TCACTCTCTA chrI:12206679-12206759 50 1.57e-05 TCTCCATCTC TCTGCGTC TCTCACCATT chrX:7334525-7334605 32 6.30e-05 CGGCCTCGTT TCTGCCTC TGTACGTCAC chrX:14312608-14312688 26 6.30e-05 AATTCAGCTG TCTCCGTC TCTTCCTCGT chrX:14640135-14640215 31 6.30e-05 GTGCTGCTCT TCTGCCTC TTTCATCTCC chrIII:5640030-5640110 14 6.30e-05 TCTCACGTCG TCTGTGTC TCTTTCGAGC chrV:1474671-1474751 54 7.86e-05 TCGCTCTATC TCTTCGTC TCTTCATTTT chrX:4389036-4389116 64 7.86e-05 CTCTGCACTC TCTTCGTC TATCCACAA chrII:5725261-5725341 57 7.86e-05 CACAACCGCT TCTTCGTC TTCTTTCGCT chrV:14200262-14200342 4 7.86e-05 GCA TCTTCGTC TCGCACACTC chrI:9343853-9343933 18 7.86e-05 GTCTGTAGTC TCTTCGTC GTTCCCACTC chrX:2536589-2536669 39 1.26e-04 tctctctctc tctccctc tctctctctc chrI:9097763-9097843 70 1.26e-04 TGTTTCTCTA TCTCTGTC ACT chrV:14366644-14366724 24 1.26e-04 CAACTTTCCA TCTCTGTC GTCTCTTCAT chrV:15136902-15136982 25 1.26e-04 AGCGCCCGTT TCTCTGTC GTCTCGAATC chrIII:10905281-10905361 19 1.26e-04 tctctttctc tctccctc tctctctttc chrX:16147913-16147993 34 1.72e-04 TGAGGGCCCC TCTCTCTC TCACTGGGCT chrX:14146907-14146987 56 1.72e-04 tatctctatt tctctctc atctctctTG chrV:6879628-6879708 34 1.72e-04 GGGCCCTCTT TCTCTCTC GGTACCCTCC chrI:12524456-12524536 26 1.72e-04 tctttctctc tctctctc tcGGCGCCAC chrV:18079313-18079393 51 1.72e-04 TTTTCTCTCG TCTCTCTC AGCTCTCAAT chrIV:6839121-6839201 27 1.72e-04 ttcatcactc tctctctc tctctTTTTC chrX:17181384-17181464 39 1.72e-04 ACActctctc tctctctc tctctTCACT chrIV:15696901-15696981 29 1.72e-04 tctcgctagc tctctctc tcactTTTTG chrV:13086110-13086190 2 1.88e-04 T TCTTTCTC TATATCTCTT chrX:16298252-16298332 12 1.88e-04 GCAAGTCTAC TCTTTCTC TCGTTTCTTT chrI:1481712-1481792 49 1.88e-04 CTTGTGtctc tctttctc taatactctc chrI:6835329-6835409 6 1.88e-04 TTTCC TCTTTCTC TGCTTTCTCT chrV:2600692-2600772 55 2.03e-04 CGTCGCGGTG TTTGCGTC ACAGACTTCA chrIII:13466416-13466496 12 2.49e-04 GCGATGTTTG TTTGTGTC TCTCAAATCT chrX:11473630-11473710 54 2.49e-04 TCTATGTCAC TTTCCGTC TTTTCCTGCT chrIII:1785916-1785996 70 2.80e-04 GCGCACACTC TCTGCATC TCT chrX:17513707-17513787 39 3.26e-04 TCTTTCACAG TTTCCCTC CAACATGCAT chrX:14841174-14841254 48 3.87e-04 TGGAGACTCA TTTTTGTC TGTTTGTCTG chrX:2688710-2688790 56 3.87e-04 TGGGGCTGCC TTTTCCTC GGGTTTGCAC chrI:14945808-14945888 60 3.87e-04 CTCCTTGGCG TTTTCCTC CTAATCTAGA chrX:16930971-16931051 17 3.87e-04 CTCATCGCTG TCTGTATC TCAATACCAG chrII:13447768-13447848 64 4.18e-04 CAGCCGTTTT TCTTCATC AGCTGACAT chrIV:1274716-1274796 35 4.18e-04 CTCGCCTTGA TTTCTCTC GCCTCTCCAC chrIV:4093281-4093361 28 4.18e-04 CCCGAACCTT TTTCTCTC GACACTCTCC chrIII:6608298-6608378 65 4.48e-04 TCAAATCACA TTTTTCTC AGCAAGTC chrII:1247037-1247117 55 4.48e-04 CCTCCGACGC TCTCTATC TCTCCGCTGG chrV:4827163-4827243 61 4.48e-04 ACGCGGCGCG TTTTTCTC TTGAATTATT chrX:15535446-15535526 58 4.79e-04 AGGTCCGCTG TCTACGTC ATATGACATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTBYSTC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:13061288-13061368 1.6e-05 49_[+2]_23 chrII:9113036-9113116 1.6e-05 5_[+2]_67 chrV:773389-773469 1.6e-05 27_[+2]_45 chrI:13514328-13514408 1.6e-05 45_[+2]_27 chrIV:14767868-14767948 1.6e-05 17_[+2]_55 chrIII:6421167-6421247 1.6e-05 54_[+2]_18 chrII:6250924-6251004 1.6e-05 26_[+2]_46 chrII:10548971-10549051 1.6e-05 14_[+2]_58 chrX:14016947-14017027 1.6e-05 18_[+2]_54 chrIII:11657349-11657429 1.6e-05 57_[+2]_15 chrI:5699150-5699230 1.6e-05 12_[+2]_60 chrX:17184496-17184576 1.6e-05 69_[+2]_3 chrV:17921554-17921634 1.6e-05 46_[+2]_26 chrI:11934296-11934376 1.6e-05 27_[+2]_45 chrIII:25698-25778 1.6e-05 54_[+2]_18 chrIV:3384701-3384781 1.6e-05 7_[+2]_65 chrX:1323199-1323279 1.6e-05 32_[+2]_40 chrIII:11007871-11007951 1.6e-05 8_[+2]_64 chrIV:6919489-6919569 1.6e-05 57_[+2]_15 chrI:12206679-12206759 1.6e-05 49_[+2]_23 chrX:7334525-7334605 6.3e-05 31_[+2]_41 chrX:14312608-14312688 6.3e-05 25_[+2]_47 chrX:14640135-14640215 6.3e-05 30_[+2]_42 chrIII:5640030-5640110 6.3e-05 13_[+2]_59 chrV:1474671-1474751 7.9e-05 53_[+2]_19 chrX:4389036-4389116 7.9e-05 63_[+2]_9 chrII:5725261-5725341 7.9e-05 56_[+2]_16 chrV:14200262-14200342 7.9e-05 3_[+2]_69 chrI:9343853-9343933 7.9e-05 17_[+2]_55 chrX:2536589-2536669 0.00013 38_[+2]_34 chrI:9097763-9097843 0.00013 69_[+2]_3 chrV:14366644-14366724 0.00013 23_[+2]_49 chrV:15136902-15136982 0.00013 24_[+2]_48 chrIII:10905281-10905361 0.00013 18_[+2]_54 chrX:16147913-16147993 0.00017 33_[+2]_39 chrX:14146907-14146987 0.00017 55_[+2]_17 chrV:6879628-6879708 0.00017 33_[+2]_39 chrI:12524456-12524536 0.00017 25_[+2]_47 chrV:18079313-18079393 0.00017 50_[+2]_22 chrIV:6839121-6839201 0.00017 26_[+2]_46 chrX:17181384-17181464 0.00017 38_[+2]_34 chrIV:15696901-15696981 0.00017 28_[+2]_44 chrV:13086110-13086190 0.00019 1_[+2]_71 chrX:16298252-16298332 0.00019 11_[+2]_61 chrI:1481712-1481792 0.00019 48_[+2]_24 chrI:6835329-6835409 0.00019 5_[+2]_67 chrV:2600692-2600772 0.0002 54_[+2]_18 chrIII:13466416-13466496 0.00025 11_[+2]_61 chrX:11473630-11473710 0.00025 53_[+2]_19 chrIII:1785916-1785996 0.00028 69_[+2]_3 chrX:17513707-17513787 0.00033 38_[+2]_34 chrX:14841174-14841254 0.00039 47_[+2]_25 chrX:2688710-2688790 0.00039 55_[+2]_17 chrI:14945808-14945888 0.00039 59_[+2]_13 chrX:16930971-16931051 0.00039 16_[+2]_56 chrII:13447768-13447848 0.00042 63_[+2]_9 chrIV:1274716-1274796 0.00042 34_[+2]_38 chrIV:4093281-4093361 0.00042 27_[+2]_45 chrIII:6608298-6608378 0.00045 64_[+2]_8 chrII:1247037-1247117 0.00045 54_[+2]_18 chrV:4827163-4827243 0.00045 60_[+2]_12 chrX:15535446-15535526 0.00048 57_[+2]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTBYSTC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTBYSTC width=8 seqs=62 chrIII:13061288-13061368 ( 50) TCTGCGTC 1 chrII:9113036-9113116 ( 6) TCTGCGTC 1 chrV:773389-773469 ( 28) TCTGCGTC 1 chrI:13514328-13514408 ( 46) TCTGCGTC 1 chrIV:14767868-14767948 ( 18) TCTGCGTC 1 chrIII:6421167-6421247 ( 55) TCTGCGTC 1 chrII:6250924-6251004 ( 27) TCTGCGTC 1 chrII:10548971-10549051 ( 15) TCTGCGTC 1 chrX:14016947-14017027 ( 19) TCTGCGTC 1 chrIII:11657349-11657429 ( 58) TCTGCGTC 1 chrI:5699150-5699230 ( 13) TCTGCGTC 1 chrX:17184496-17184576 ( 70) TCTGCGTC 1 chrV:17921554-17921634 ( 47) TCTGCGTC 1 chrI:11934296-11934376 ( 28) TCTGCGTC 1 chrIII:25698-25778 ( 55) TCTGCGTC 1 chrIV:3384701-3384781 ( 8) TCTGCGTC 1 chrX:1323199-1323279 ( 33) TCTGCGTC 1 chrIII:11007871-11007951 ( 9) TCTGCGTC 1 chrIV:6919489-6919569 ( 58) TCTGCGTC 1 chrI:12206679-12206759 ( 50) TCTGCGTC 1 chrX:7334525-7334605 ( 32) TCTGCCTC 1 chrX:14312608-14312688 ( 26) TCTCCGTC 1 chrX:14640135-14640215 ( 31) TCTGCCTC 1 chrIII:5640030-5640110 ( 14) TCTGTGTC 1 chrV:1474671-1474751 ( 54) TCTTCGTC 1 chrX:4389036-4389116 ( 64) TCTTCGTC 1 chrII:5725261-5725341 ( 57) TCTTCGTC 1 chrV:14200262-14200342 ( 4) TCTTCGTC 1 chrI:9343853-9343933 ( 18) TCTTCGTC 1 chrX:2536589-2536669 ( 39) TCTCCCTC 1 chrI:9097763-9097843 ( 70) TCTCTGTC 1 chrV:14366644-14366724 ( 24) TCTCTGTC 1 chrV:15136902-15136982 ( 25) TCTCTGTC 1 chrIII:10905281-10905361 ( 19) TCTCCCTC 1 chrX:16147913-16147993 ( 34) TCTCTCTC 1 chrX:14146907-14146987 ( 56) TCTCTCTC 1 chrV:6879628-6879708 ( 34) TCTCTCTC 1 chrI:12524456-12524536 ( 26) TCTCTCTC 1 chrV:18079313-18079393 ( 51) TCTCTCTC 1 chrIV:6839121-6839201 ( 27) TCTCTCTC 1 chrX:17181384-17181464 ( 39) TCTCTCTC 1 chrIV:15696901-15696981 ( 29) TCTCTCTC 1 chrV:13086110-13086190 ( 2) TCTTTCTC 1 chrX:16298252-16298332 ( 12) TCTTTCTC 1 chrI:1481712-1481792 ( 49) TCTTTCTC 1 chrI:6835329-6835409 ( 6) TCTTTCTC 1 chrV:2600692-2600772 ( 55) TTTGCGTC 1 chrIII:13466416-13466496 ( 12) TTTGTGTC 1 chrX:11473630-11473710 ( 54) TTTCCGTC 1 chrIII:1785916-1785996 ( 70) TCTGCATC 1 chrX:17513707-17513787 ( 39) TTTCCCTC 1 chrX:14841174-14841254 ( 48) TTTTTGTC 1 chrX:2688710-2688790 ( 56) TTTTCCTC 1 chrI:14945808-14945888 ( 60) TTTTCCTC 1 chrX:16930971-16931051 ( 17) TCTGTATC 1 chrII:13447768-13447848 ( 64) TCTTCATC 1 chrIV:1274716-1274796 ( 35) TTTCTCTC 1 chrIV:4093281-4093361 ( 28) TTTCTCTC 1 chrIII:6608298-6608378 ( 65) TTTTTCTC 1 chrII:1247037-1247117 ( 55) TCTCTATC 1 chrV:4827163-4827243 ( 61) TTTTTCTC 1 chrX:15535446-15535526 ( 58) TCTACGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTBYSTC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.49826 E= 1.8e-019 -1260 -1260 -1260 201 -1260 170 -1260 -48 -1260 -1260 -1260 201 -393 27 79 -3 -1260 127 -1260 64 -194 55 117 -1260 -1260 -1260 -1260 201 -1260 198 -1260 -1260 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTBYSTC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 62 E= 1.8e-019 0.000000 0.000000 0.000000 1.000000 0.000000 0.822581 0.000000 0.177419 0.000000 0.000000 0.000000 1.000000 0.016129 0.306452 0.435484 0.241935 0.000000 0.612903 0.000000 0.387097 0.064516 0.370968 0.564516 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTBYSTC MEME-2 regular expression -------------------------------------------------------------------------------- TCT[GCT][CT][GC]TC -------------------------------------------------------------------------------- Time 9.36 secs. ******************************************************************************** ******************************************************************************** MOTIF ARAGARAR MEME-3 width = 8 sites = 65 llr = 494 E-value = 5.2e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARAGARAR MEME-3 Description -------------------------------------------------------------------------------- Simplified A 65a3a4a4 pos.-specific C 2::::::: probability G 25:7:6:6 matrix T :::::::: bits 2.0 * * * 1.8 * * * 1.6 * * * 1.4 * * * Relative 1.2 *** * Entropy 1.0 ******* (11.0 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGAGAGAG consensus GA A A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAGARAR MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:7580385-7580465 51 2.93e-05 GCATGGAGTG AAAGAGAG TATACGTATG chrX:16147913-16147993 4 2.93e-05 gac agagagag aTTTAGATTC chrII:9113036-9113116 63 2.93e-05 AGAGATAGAA AAAGAGAG AAAAAGGAAA chrX:5729234-5729314 40 2.93e-05 AGGGACGTGG AGAGAGAG AAGGCTCGCG chrIII:1080714-1080794 4 2.93e-05 GGA AAAGAGAG CGATGGAGCG chrI:9097763-9097843 39 2.93e-05 TTCAGATTGA AAAGAGAG GAAAAAACAA chrV:14136220-14136300 34 2.93e-05 GAGAAGAAAG AGAGAGAG AAAGAAGAAC chrII:13335237-13335317 21 2.93e-05 ggagagagag agagagag ggagggagag chrII:4999315-4999395 60 2.93e-05 TGTTTGCGGA AGAGAGAG GCAAGATGAA chrV:9273680-9273760 5 2.93e-05 ACCC AGAGAGAG TGCGTGGAGA chrII:9646268-9646348 10 5.82e-05 ACGTGCCGA AGAGAAAG GATTCGCGAA chrX:2536589-2536669 2 5.82e-05 g agagaaag aaagagggag chrII:13157121-13157201 25 5.82e-05 AGAAACGCGC AAAGAAAG TTTGCTGGCG chrV:6658944-6659024 16 5.82e-05 GGTGGAAACG AGAGAAAG CAAGGCACAT chrIV:6790572-6790652 71 8.70e-05 ACGAATGGTG AGAGAGAA TT chrX:14841174-14841254 10 8.70e-05 agacgagct agagagaA ATGACGACGC chrX:14016947-14017027 72 8.70e-05 AGATGTTGGG AGAGAGAA A chrX:10419898-10419978 65 8.70e-05 TGGTGCGCGC AGAGAGAA GAAAGAGG chrI:9076258-9076338 44 8.70e-05 agagagatac agagagaa aaagagCACA chrI:12179547-12179627 53 8.70e-05 GCTGTTTGGA AAAGAGAA GAATGAAAAT chrX:17420168-17420248 44 8.70e-05 AGAAGATATG AAAGAGAA GAGTCGTCTT chrII:8796586-8796666 2 8.70e-05 g agagagaA TAGGCGGACC chrV:13715407-13715487 11 1.15e-04 AAACAAAGCA AAAGAAAA AATTCATTTA chrIV:15472528-15472608 8 1.15e-04 TAATTAA AAAGAAAA CAATGCAAGT chrII:15010583-15010663 9 1.15e-04 CCCTCCGA AAAGAAAA TGAAAATCAA chrV:15189709-15189789 21 1.15e-04 TCTGCTGATG AAAGAAAA CCTTATTCAA chrX:11467575-11467655 30 1.15e-04 agaagatgaa aaagaaaa agaaaaagga chrIV:3338835-3338915 14 1.15e-04 CGAAAACCAC AGAGAAAA GGGTTACACG chrIV:6839121-6839201 51 1.15e-04 TTTCATTCAA AAAGAAAA GCGACATGAC chrIV:9196893-9196973 27 1.15e-04 AGAGTCGCAG AAAGAAAA GTAGGGAAGT chrV:13565361-13565441 73 1.74e-04 AAACGCAGAG AAAAAGAG chrX:1454481-1454561 70 1.74e-04 TGTGTTGTga gaagagag gag chrI:13337274-13337354 55 1.74e-04 GCCTCACAGT GGAGAGAG TACTCGGAAG chrIII:3863055-3863135 69 1.74e-04 AAAGCGGAGA GGAGAGAG CGCC chrII:5725261-5725341 16 1.74e-04 CGTTGCTCAC GGAGAGAG ATAGAAACGC chrII:6347863-6347943 28 1.74e-04 CTAGTAAGGC AAAAAGAG CATGAGCAAG chrV:11228834-11228914 33 1.74e-04 CGGAACGAGT AAAAAGAG TACGCATCAG chrX:11473630-11473710 8 1.74e-04 GCACAGA AAAAAGAG CAATTCGCCT chrIII:2528776-2528856 38 1.74e-04 GTCTCGCAGG GAAGAGAG CCAACATGGC chrX:2971583-2971663 64 1.74e-04 ACGTGCCTGG AAAAAGAG ACGTCAACT chrX:1909556-1909636 70 1.74e-04 AGGGAGAGGG GAAGAGAG CGA chrIV:11524369-11524449 59 1.74e-04 AGGAAGGGGA GGAGAGAG GCCGATTTGG chrI:8426840-8426920 26 2.04e-04 CACACACAAA CGAGAGAG CACACATTTT chrII:10868932-10869012 54 2.04e-04 GGTGGAGGGA CGAGAGAG TGAGAGAAAC chrIII:9456246-9456326 8 2.04e-04 TTGCAGG CGAGAGAG CGTGTGAAAA chrII:13872647-13872727 8 2.04e-04 TAAAAAG CGAGAGAG CACACAAAAC chrX:4190727-4190807 46 2.04e-04 TAAGAAACGG CAAGAGAG CGCACGCAGA chrX:4145668-4145748 3 2.04e-04 GG CGAGAGAG TGTGGGAGGG chrIV:10503874-10503954 73 2.62e-04 GGTTTTCGGG AGAAAAAG chrIV:6919489-6919569 10 2.62e-04 GCCAACCAC AGAAAAAG CGTCAATCAA chrX:4395610-4395690 38 2.62e-04 ATGGACGGGA GGAGAAAG ATGGAGAACA chrIV:11522690-11522770 56 3.20e-04 TTTAGAATTT GAAGAGAA TCAGAAATTT chrIV:6809949-6810029 56 3.20e-04 AGTAAAAGGA AAAAAGAA GACGAAGAAG chrV:16965807-16965887 50 3.49e-04 GAGACGCAGA CGAGAAAG GTGCAGTGGA chrX:15607706-15607786 73 4.36e-04 TATTAAAAAA AAAAAAAA chrIV:11809876-11809956 32 4.36e-04 agaagatgaa gaagaaaa ataagaagaa chrIII:1950337-1950417 13 4.36e-04 TTTTTAAAAC AAAAAAAA ACCAAAATCA chrX:4458044-4458124 44 4.65e-04 GACGGAGGAG GGAAAGAG TGTGTGTGTC chrV:15766349-15766429 7 4.94e-04 AAAATG CGAGAAAA TCGAGAGATG chrIII:7179800-7179880 35 5.53e-04 TCATTTCCAT GGAAAAAG TCGCTACGCA chrII:2748402-2748482 22 5.53e-04 GAGCCAATCT GAAAAAAG AGACGCAGAC chrI:13756494-13756574 3 6.11e-04 at cgaaaaAG CAAGCGCGCT chrX:14146907-14146987 15 6.11e-04 CCTGCCGCAG CAAAAAAG GTCACATCCC chrI:13951773-13951853 8 6.68e-04 AAAGTTT GGAAAAAA ATAAAATCCA chrX:4960641-4960721 14 6.97e-04 TTTCAGTTCC CAAAAAAA TGTGTGACGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAGARAR MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:7580385-7580465 2.9e-05 50_[+3]_22 chrX:16147913-16147993 2.9e-05 3_[+3]_69 chrII:9113036-9113116 2.9e-05 62_[+3]_10 chrX:5729234-5729314 2.9e-05 39_[+3]_33 chrIII:1080714-1080794 2.9e-05 3_[+3]_69 chrI:9097763-9097843 2.9e-05 38_[+3]_34 chrV:14136220-14136300 2.9e-05 33_[+3]_39 chrII:13335237-13335317 2.9e-05 20_[+3]_52 chrII:4999315-4999395 2.9e-05 59_[+3]_13 chrV:9273680-9273760 2.9e-05 4_[+3]_68 chrII:9646268-9646348 5.8e-05 9_[+3]_63 chrX:2536589-2536669 5.8e-05 1_[+3]_71 chrII:13157121-13157201 5.8e-05 24_[+3]_48 chrV:6658944-6659024 5.8e-05 15_[+3]_57 chrIV:6790572-6790652 8.7e-05 70_[+3]_2 chrX:14841174-14841254 8.7e-05 9_[+3]_63 chrX:14016947-14017027 8.7e-05 71_[+3]_1 chrX:10419898-10419978 8.7e-05 64_[+3]_8 chrI:9076258-9076338 8.7e-05 43_[+3]_29 chrI:12179547-12179627 8.7e-05 52_[+3]_20 chrX:17420168-17420248 8.7e-05 43_[+3]_29 chrII:8796586-8796666 8.7e-05 1_[+3]_71 chrV:13715407-13715487 0.00012 10_[+3]_62 chrIV:15472528-15472608 0.00012 7_[+3]_65 chrII:15010583-15010663 0.00012 8_[+3]_64 chrV:15189709-15189789 0.00012 20_[+3]_52 chrX:11467575-11467655 0.00012 29_[+3]_43 chrIV:3338835-3338915 0.00012 13_[+3]_59 chrIV:6839121-6839201 0.00012 50_[+3]_22 chrIV:9196893-9196973 0.00012 26_[+3]_46 chrV:13565361-13565441 0.00017 72_[+3] chrX:1454481-1454561 0.00017 69_[+3]_3 chrI:13337274-13337354 0.00017 54_[+3]_18 chrIII:3863055-3863135 0.00017 68_[+3]_4 chrII:5725261-5725341 0.00017 15_[+3]_57 chrII:6347863-6347943 0.00017 27_[+3]_45 chrV:11228834-11228914 0.00017 32_[+3]_40 chrX:11473630-11473710 0.00017 7_[+3]_65 chrIII:2528776-2528856 0.00017 37_[+3]_35 chrX:2971583-2971663 0.00017 63_[+3]_9 chrX:1909556-1909636 0.00017 69_[+3]_3 chrIV:11524369-11524449 0.00017 58_[+3]_14 chrI:8426840-8426920 0.0002 25_[+3]_47 chrII:10868932-10869012 0.0002 53_[+3]_19 chrIII:9456246-9456326 0.0002 7_[+3]_65 chrII:13872647-13872727 0.0002 7_[+3]_65 chrX:4190727-4190807 0.0002 45_[+3]_27 chrX:4145668-4145748 0.0002 2_[+3]_70 chrIV:10503874-10503954 0.00026 72_[+3] chrIV:6919489-6919569 0.00026 9_[+3]_63 chrX:4395610-4395690 0.00026 37_[+3]_35 chrIV:11522690-11522770 0.00032 55_[+3]_17 chrIV:6809949-6810029 0.00032 55_[+3]_17 chrV:16965807-16965887 0.00035 49_[+3]_23 chrX:15607706-15607786 0.00044 72_[+3] chrIV:11809876-11809956 0.00044 31_[+3]_41 chrIII:1950337-1950417 0.00044 12_[+3]_60 chrX:4458044-4458124 0.00046 43_[+3]_29 chrV:15766349-15766429 0.00049 6_[+3]_66 chrIII:7179800-7179880 0.00055 34_[+3]_38 chrII:2748402-2748482 0.00055 21_[+3]_51 chrI:13756494-13756574 0.00061 2_[+3]_70 chrX:14146907-14146987 0.00061 14_[+3]_58 chrI:13951773-13951853 0.00067 7_[+3]_65 chrX:4960641-4960721 0.0007 13_[+3]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAGARAR MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARAGARAR width=8 seqs=65 chrIV:7580385-7580465 ( 51) AAAGAGAG 1 chrX:16147913-16147993 ( 4) AGAGAGAG 1 chrII:9113036-9113116 ( 63) AAAGAGAG 1 chrX:5729234-5729314 ( 40) AGAGAGAG 1 chrIII:1080714-1080794 ( 4) AAAGAGAG 1 chrI:9097763-9097843 ( 39) AAAGAGAG 1 chrV:14136220-14136300 ( 34) AGAGAGAG 1 chrII:13335237-13335317 ( 21) AGAGAGAG 1 chrII:4999315-4999395 ( 60) AGAGAGAG 1 chrV:9273680-9273760 ( 5) AGAGAGAG 1 chrII:9646268-9646348 ( 10) AGAGAAAG 1 chrX:2536589-2536669 ( 2) AGAGAAAG 1 chrII:13157121-13157201 ( 25) AAAGAAAG 1 chrV:6658944-6659024 ( 16) AGAGAAAG 1 chrIV:6790572-6790652 ( 71) AGAGAGAA 1 chrX:14841174-14841254 ( 10) AGAGAGAA 1 chrX:14016947-14017027 ( 72) AGAGAGAA 1 chrX:10419898-10419978 ( 65) AGAGAGAA 1 chrI:9076258-9076338 ( 44) AGAGAGAA 1 chrI:12179547-12179627 ( 53) AAAGAGAA 1 chrX:17420168-17420248 ( 44) AAAGAGAA 1 chrII:8796586-8796666 ( 2) AGAGAGAA 1 chrV:13715407-13715487 ( 11) AAAGAAAA 1 chrIV:15472528-15472608 ( 8) AAAGAAAA 1 chrII:15010583-15010663 ( 9) AAAGAAAA 1 chrV:15189709-15189789 ( 21) AAAGAAAA 1 chrX:11467575-11467655 ( 30) AAAGAAAA 1 chrIV:3338835-3338915 ( 14) AGAGAAAA 1 chrIV:6839121-6839201 ( 51) AAAGAAAA 1 chrIV:9196893-9196973 ( 27) AAAGAAAA 1 chrV:13565361-13565441 ( 73) AAAAAGAG 1 chrX:1454481-1454561 ( 70) GAAGAGAG 1 chrI:13337274-13337354 ( 55) GGAGAGAG 1 chrIII:3863055-3863135 ( 69) GGAGAGAG 1 chrII:5725261-5725341 ( 16) GGAGAGAG 1 chrII:6347863-6347943 ( 28) AAAAAGAG 1 chrV:11228834-11228914 ( 33) AAAAAGAG 1 chrX:11473630-11473710 ( 8) AAAAAGAG 1 chrIII:2528776-2528856 ( 38) GAAGAGAG 1 chrX:2971583-2971663 ( 64) AAAAAGAG 1 chrX:1909556-1909636 ( 70) GAAGAGAG 1 chrIV:11524369-11524449 ( 59) GGAGAGAG 1 chrI:8426840-8426920 ( 26) CGAGAGAG 1 chrII:10868932-10869012 ( 54) CGAGAGAG 1 chrIII:9456246-9456326 ( 8) CGAGAGAG 1 chrII:13872647-13872727 ( 8) CGAGAGAG 1 chrX:4190727-4190807 ( 46) CAAGAGAG 1 chrX:4145668-4145748 ( 3) CGAGAGAG 1 chrIV:10503874-10503954 ( 73) AGAAAAAG 1 chrIV:6919489-6919569 ( 10) AGAAAAAG 1 chrX:4395610-4395690 ( 38) GGAGAAAG 1 chrIV:11522690-11522770 ( 56) GAAGAGAA 1 chrIV:6809949-6810029 ( 56) AAAAAGAA 1 chrV:16965807-16965887 ( 50) CGAGAAAG 1 chrX:15607706-15607786 ( 73) AAAAAAAA 1 chrIV:11809876-11809956 ( 32) GAAGAAAA 1 chrIII:1950337-1950417 ( 13) AAAAAAAA 1 chrX:4458044-4458124 ( 44) GGAAAGAG 1 chrV:15766349-15766429 ( 7) CGAGAAAA 1 chrIII:7179800-7179880 ( 35) GGAAAAAG 1 chrII:2748402-2748482 ( 22) GAAAAAAG 1 chrI:13756494-13756574 ( 3) CGAAAAAG 1 chrX:14146907-14146987 ( 15) CAAAAAAG 1 chrI:13951773-13951853 ( 8) GGAAAAAA 1 chrX:4960641-4960721 ( 14) CAAAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAGARAR MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1364 E= 5.2e-013 132 -58 -22 -1267 95 -1267 106 -1267 202 -1267 -1267 -1267 8 -1267 156 -1267 202 -1267 -1267 -1267 69 -1267 126 -1267 202 -1267 -1267 -1267 58 -1267 133 -1267 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAGARAR MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 65 E= 5.2e-013 0.615385 0.169231 0.215385 0.000000 0.476923 0.000000 0.523077 0.000000 1.000000 0.000000 0.000000 0.000000 0.261538 0.000000 0.738462 0.000000 1.000000 0.000000 0.000000 0.000000 0.400000 0.000000 0.600000 0.000000 1.000000 0.000000 0.000000 0.000000 0.369231 0.000000 0.630769 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAGARAR MEME-3 regular expression -------------------------------------------------------------------------------- [AG][GA]A[GA]A[GA]A[GA] -------------------------------------------------------------------------------- Time 13.31 secs. ******************************************************************************** ******************************************************************************** MOTIF CRCKCTCT MEME-4 width = 8 sites = 70 llr = 502 E-value = 3.3e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CRCKCTCT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :4:1:::: pos.-specific C 8:9:a:8: probability G :4:3:2:: matrix T 2216:82a bits 2.0 1.8 * * 1.6 * * * 1.4 * ** * Relative 1.2 * * **** Entropy 1.0 * * **** (10.3 bits) 0.8 * * **** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACTCTCT consensus TG G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCKCTCT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:773389-773469 49 1.57e-05 CTCCTTCGCA CACTCTCT GCCTCGCTCG chrX:4389036-4389116 41 1.57e-05 CGTCTCTTCT CACTCTCT GCTCTCTCTG chrV:18723763-18723843 38 1.57e-05 CACATTTCTG CACTCTCT CGCCTACTTA chrV:14200262-14200342 17 1.57e-05 TCGTCTCGCA CACTCTCT CGCCCATCCA chrIII:11007871-11007951 19 1.57e-05 TCTGCGTCTC CACTCTCT GGGATGTGGG chrI:12728070-12728150 12 1.57e-05 TGTCTCCCCG CACTCTCT CGCTGGTTCT chrIV:6919489-6919569 67 1.57e-05 TTCTGCGTCT CACTCTCT AATTAT chrI:9343853-9343933 31 1.57e-05 TCGTCGTTCC CACTCTCT ACACACCTGG chrIV:6839121-6839201 10 1.57e-05 TTTTCAtct cactctct tcatcactct chrI:12206679-12206759 35 1.57e-05 TCATCGATCT CACTCTCT CCATCTCTCT chrIV:1274716-1274796 60 1.57e-05 CACTCCCCAA CACTCTCT CGTCGCGCTG chrX:17181384-17181464 30 1.57e-05 GCGGCACCAA CActctct ctctctctct chrX:17513707-17513787 9 3.16e-05 CGTCTCTG CGCTCTCT CAATGTTCAG chrX:15189487-15189567 49 3.16e-05 ACAAGTTTCG CGCTCTCT CACGCCCAAA chrIV:6790572-6790652 27 4.75e-05 TAAATGCAAA CACGCTCT ATAGACAAAA chrV:15189709-15189789 6 4.75e-05 GTAAG CACGCTCT GCTGATGAAA chrIII:11142264-11142344 44 6.36e-05 AAATTGCAAG CGCGCTCT ACTGCAAGGA chrX:1856352-1856432 52 6.36e-05 GGGGGGAATG CGCGCTCT ATTGAGAAGG chrI:6542023-6542103 26 6.36e-05 TTAATGCAAG CGCGCTCT TTCGTCACGC chrX:2536589-2536669 30 7.94e-05 agCGCGTCAt ctctctct ctctccctct chrIII:5640030-5640110 71 7.94e-05 TCTTCATTTt ctctctct tt chrIII:10905281-10905361 69 7.94e-05 ttgtccgttc ctctctct gcgc chrX:17184496-17184576 4 9.47e-05 tct cactcTTT CCCTGTGTGA chrI:6314848-6314928 46 1.10e-04 TTGGCGCCAA CGCTCTTT ATTGGCGCCT chrI:13514328-13514408 56 1.41e-04 TCTGCGTCTC TACTCTCT ACGGCGTGGC chrI:1481712-1481792 60 1.41e-04 ctttctctaa tactctct atttctctaa chrI:5699150-5699230 34 1.41e-04 CTCTTGTATG TACTCTCT CGTTTTGTTC chrII:11747101-11747181 8 1.89e-04 CCTCgct cgctcgct gcttctgctg chrV:1474671-1474751 43 1.89e-04 TTGTCACTAT CTCGCTCT ATCTCTTCGT chrIII:13466416-13466496 33 1.89e-04 CAAATCTCTA TGCTCTCT TGTTTGCGCA chrX:15607013-15607093 68 1.89e-04 TCTCTAACGT CTCGCTCT CGGTG chrX:2237565-2237645 71 1.89e-04 AAGGAAACAC TGCTCTCT TC chrV:18079313-18079393 68 1.89e-04 CAGCTCTCAA TGCTCTCT AATCG chrI:1067099-1067179 4 2.20e-04 AGT CACGCTTT TTAAGCGCAA chrIV:8432284-8432364 34 2.20e-04 CTTCAGTTTA CACACTCT AACATTGAAT chrII:411010-411090 6 2.52e-04 CTTCT CGCGCTTT TTCAATAGAG chrIV:14464238-14464318 1 2.52e-04 . CGCACTCT GTAATTGCGG chrIII:9631487-9631567 17 2.52e-04 TCTTGAAATG CGCGCTTT TTCAAATTTT chrV:7776273-7776353 50 2.52e-04 CTGCGAGACC CGCGCTTT CGCTGCGTAC chrX:13396728-13396808 54 2.52e-04 CTAAACAATG CGCGCTTT TTGTGTAGAT chrV:7237285-7237365 41 2.52e-04 TTGAACCTGG CGCGCTTT CTGGCGTTCA chrIV:4093281-4093361 64 2.52e-04 CGCACTATCT CGCACTCT GTGATATTT chrV:13086110-13086190 61 2.99e-04 CCTCGGCCTC CTCTCTTT TCCACCTGCC chrX:7181773-7181853 27 2.99e-04 GTCAATTAGA TACGCTCT GACTACACAC chrI:12524456-12524536 13 2.99e-04 TGTGTGTGGt ctctcttt ctctctctct chrI:6799635-6799715 54 3.31e-04 ATGATGCATT TGCGCTCT ATCGGTCATT chrIV:4390634-4390714 64 3.31e-04 GCGCCTTTTG CGCGCGCT GTTTGAAAT chrIV:15471557-15471637 26 3.31e-04 ATAATGCAAG TGCGCTCT ATCTGCACGC chrI:15034054-15034134 73 3.31e-04 ATTTGTTTTT CGCGCGCT chrIV:7623865-7623945 38 3.31e-04 TCCGAGCCCG CGCGCGCT CAAGCTTTGA chrV:17921554-17921634 57 3.62e-04 TCTGCGTCTC TTCTCTCT CGCACGTAGc chrII:11874830-11874910 26 3.93e-04 ACTACGGTAA CACTCGTT TCAGCTGTGT chrX:2242926-2243006 42 3.93e-04 ACTACGGTAA CACTCGTT TCTGGCTGTG chrIII:6375151-6375231 18 3.93e-04 TATACGGTAA CACTCGTT TTGCGTGTGT chrIII:8130507-8130587 19 3.93e-04 AGTACGGTAA CACTCGTT TCAAGTGTGT chrIV:11522690-11522770 16 4.70e-04 TAGACGCAGA CATTCTCT GCACAAATTC chrI:4270522-4270602 20 5.79e-04 CGCATTAGAG CGCACTTT CCTCAATAAT chrIII:6608298-6608378 25 5.79e-04 GCGTGAATTC TGCTCGCT GCGAGACCCA chrI:6215571-6215651 56 5.79e-04 TCCGAAAACA TTCGCTCT CCGTTTTTTC chrV:13715407-13715487 65 6.41e-04 TGACACGTCA CACACGCT GTGGGAAA chrIII:5855954-5856034 36 6.41e-04 AGAGACATTC TACGCTTT TCGGGGAGGA chrX:5729234-5729314 56 7.04e-04 AGAAGGCTCG CGCACGCT GTGGCGTCTT chrIII:9780772-9780852 23 7.04e-04 CACTGCATTT CGCACGCT ACGCAGCCGC chrV:11610624-11610704 12 8.13e-04 ATATACAATG TGCGCGCT CATCTTGCAA chrIV:3384701-3384781 66 8.13e-04 TCTCCCCGCT CACTTTCT CTAATTC chrII:10548971-10549051 72 8.44e-04 AATGTTCGAG CGCTTTCT T chrII:1247037-1247117 2 8.44e-04 G CTTTCTCT GGTCAGCTCT chrI:6835329-6835409 16 8.44e-04 TCTTTCTCTG CTTTCTCT CAAGCTCTTA chrV:13565361-13565441 4 9.20e-04 AAT CGTTCTTT TCTCACTCAA chrV:15136902-15136982 42 1.63e-03 CGTCTCGAAT CTCTCTCG CGTAGCAACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCKCTCT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:773389-773469 1.6e-05 48_[+4]_24 chrX:4389036-4389116 1.6e-05 40_[+4]_32 chrV:18723763-18723843 1.6e-05 37_[+4]_35 chrV:14200262-14200342 1.6e-05 16_[+4]_56 chrIII:11007871-11007951 1.6e-05 18_[+4]_54 chrI:12728070-12728150 1.6e-05 11_[+4]_61 chrIV:6919489-6919569 1.6e-05 66_[+4]_6 chrI:9343853-9343933 1.6e-05 30_[+4]_42 chrIV:6839121-6839201 1.6e-05 9_[+4]_63 chrI:12206679-12206759 1.6e-05 34_[+4]_38 chrIV:1274716-1274796 1.6e-05 59_[+4]_13 chrX:17181384-17181464 1.6e-05 29_[+4]_43 chrX:17513707-17513787 3.2e-05 8_[+4]_64 chrX:15189487-15189567 3.2e-05 48_[+4]_24 chrIV:6790572-6790652 4.7e-05 26_[+4]_46 chrV:15189709-15189789 4.7e-05 5_[+4]_67 chrIII:11142264-11142344 6.4e-05 43_[+4]_29 chrX:1856352-1856432 6.4e-05 51_[+4]_21 chrI:6542023-6542103 6.4e-05 25_[+4]_47 chrX:2536589-2536669 7.9e-05 29_[+4]_43 chrIII:5640030-5640110 7.9e-05 70_[+4]_2 chrIII:10905281-10905361 7.9e-05 68_[+4]_4 chrX:17184496-17184576 9.5e-05 3_[+4]_69 chrI:6314848-6314928 0.00011 45_[+4]_27 chrI:13514328-13514408 0.00014 55_[+4]_17 chrI:1481712-1481792 0.00014 59_[+4]_13 chrI:5699150-5699230 0.00014 33_[+4]_39 chrII:11747101-11747181 0.00019 7_[+4]_65 chrV:1474671-1474751 0.00019 42_[+4]_30 chrIII:13466416-13466496 0.00019 32_[+4]_40 chrX:15607013-15607093 0.00019 67_[+4]_5 chrX:2237565-2237645 0.00019 70_[+4]_2 chrV:18079313-18079393 0.00019 67_[+4]_5 chrI:1067099-1067179 0.00022 3_[+4]_69 chrIV:8432284-8432364 0.00022 33_[+4]_39 chrII:411010-411090 0.00025 5_[+4]_67 chrIV:14464238-14464318 0.00025 [+4]_72 chrIII:9631487-9631567 0.00025 16_[+4]_56 chrV:7776273-7776353 0.00025 49_[+4]_23 chrX:13396728-13396808 0.00025 53_[+4]_19 chrV:7237285-7237365 0.00025 40_[+4]_32 chrIV:4093281-4093361 0.00025 63_[+4]_9 chrV:13086110-13086190 0.0003 60_[+4]_12 chrX:7181773-7181853 0.0003 26_[+4]_46 chrI:12524456-12524536 0.0003 12_[+4]_60 chrI:6799635-6799715 0.00033 53_[+4]_19 chrIV:4390634-4390714 0.00033 63_[+4]_9 chrIV:15471557-15471637 0.00033 25_[+4]_47 chrI:15034054-15034134 0.00033 72_[+4] chrIV:7623865-7623945 0.00033 37_[+4]_35 chrV:17921554-17921634 0.00036 56_[+4]_16 chrII:11874830-11874910 0.00039 25_[+4]_47 chrX:2242926-2243006 0.00039 41_[+4]_31 chrIII:6375151-6375231 0.00039 17_[+4]_55 chrIII:8130507-8130587 0.00039 18_[+4]_54 chrIV:11522690-11522770 0.00047 15_[+4]_57 chrI:4270522-4270602 0.00058 19_[+4]_53 chrIII:6608298-6608378 0.00058 24_[+4]_48 chrI:6215571-6215651 0.00058 55_[+4]_17 chrV:13715407-13715487 0.00064 64_[+4]_8 chrIII:5855954-5856034 0.00064 35_[+4]_37 chrX:5729234-5729314 0.0007 55_[+4]_17 chrIII:9780772-9780852 0.0007 22_[+4]_50 chrV:11610624-11610704 0.00081 11_[+4]_61 chrIV:3384701-3384781 0.00081 65_[+4]_7 chrII:10548971-10549051 0.00084 71_[+4]_1 chrII:1247037-1247117 0.00084 1_[+4]_71 chrI:6835329-6835409 0.00084 15_[+4]_57 chrV:13565361-13565441 0.00092 3_[+4]_69 chrV:15136902-15136982 0.0016 41_[+4]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCKCTCT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CRCKCTCT width=8 seqs=70 chrV:773389-773469 ( 49) CACTCTCT 1 chrX:4389036-4389116 ( 41) CACTCTCT 1 chrV:18723763-18723843 ( 38) CACTCTCT 1 chrV:14200262-14200342 ( 17) CACTCTCT 1 chrIII:11007871-11007951 ( 19) CACTCTCT 1 chrI:12728070-12728150 ( 12) CACTCTCT 1 chrIV:6919489-6919569 ( 67) CACTCTCT 1 chrI:9343853-9343933 ( 31) CACTCTCT 1 chrIV:6839121-6839201 ( 10) CACTCTCT 1 chrI:12206679-12206759 ( 35) CACTCTCT 1 chrIV:1274716-1274796 ( 60) CACTCTCT 1 chrX:17181384-17181464 ( 30) CACTCTCT 1 chrX:17513707-17513787 ( 9) CGCTCTCT 1 chrX:15189487-15189567 ( 49) CGCTCTCT 1 chrIV:6790572-6790652 ( 27) CACGCTCT 1 chrV:15189709-15189789 ( 6) CACGCTCT 1 chrIII:11142264-11142344 ( 44) CGCGCTCT 1 chrX:1856352-1856432 ( 52) CGCGCTCT 1 chrI:6542023-6542103 ( 26) CGCGCTCT 1 chrX:2536589-2536669 ( 30) CTCTCTCT 1 chrIII:5640030-5640110 ( 71) CTCTCTCT 1 chrIII:10905281-10905361 ( 69) CTCTCTCT 1 chrX:17184496-17184576 ( 4) CACTCTTT 1 chrI:6314848-6314928 ( 46) CGCTCTTT 1 chrI:13514328-13514408 ( 56) TACTCTCT 1 chrI:1481712-1481792 ( 60) TACTCTCT 1 chrI:5699150-5699230 ( 34) TACTCTCT 1 chrII:11747101-11747181 ( 8) CGCTCGCT 1 chrV:1474671-1474751 ( 43) CTCGCTCT 1 chrIII:13466416-13466496 ( 33) TGCTCTCT 1 chrX:15607013-15607093 ( 68) CTCGCTCT 1 chrX:2237565-2237645 ( 71) TGCTCTCT 1 chrV:18079313-18079393 ( 68) TGCTCTCT 1 chrI:1067099-1067179 ( 4) CACGCTTT 1 chrIV:8432284-8432364 ( 34) CACACTCT 1 chrII:411010-411090 ( 6) CGCGCTTT 1 chrIV:14464238-14464318 ( 1) CGCACTCT 1 chrIII:9631487-9631567 ( 17) CGCGCTTT 1 chrV:7776273-7776353 ( 50) CGCGCTTT 1 chrX:13396728-13396808 ( 54) CGCGCTTT 1 chrV:7237285-7237365 ( 41) CGCGCTTT 1 chrIV:4093281-4093361 ( 64) CGCACTCT 1 chrV:13086110-13086190 ( 61) CTCTCTTT 1 chrX:7181773-7181853 ( 27) TACGCTCT 1 chrI:12524456-12524536 ( 13) CTCTCTTT 1 chrI:6799635-6799715 ( 54) TGCGCTCT 1 chrIV:4390634-4390714 ( 64) CGCGCGCT 1 chrIV:15471557-15471637 ( 26) TGCGCTCT 1 chrI:15034054-15034134 ( 73) CGCGCGCT 1 chrIV:7623865-7623945 ( 38) CGCGCGCT 1 chrV:17921554-17921634 ( 57) TTCTCTCT 1 chrII:11874830-11874910 ( 26) CACTCGTT 1 chrX:2242926-2243006 ( 42) CACTCGTT 1 chrIII:6375151-6375231 ( 18) CACTCGTT 1 chrIII:8130507-8130587 ( 19) CACTCGTT 1 chrIV:11522690-11522770 ( 16) CATTCTCT 1 chrI:4270522-4270602 ( 20) CGCACTTT 1 chrIII:6608298-6608378 ( 25) TGCTCGCT 1 chrI:6215571-6215651 ( 56) TTCGCTCT 1 chrV:13715407-13715487 ( 65) CACACGCT 1 chrIII:5855954-5856034 ( 36) TACGCTTT 1 chrX:5729234-5729314 ( 56) CGCACGCT 1 chrIII:9780772-9780852 ( 23) CGCACGCT 1 chrV:11610624-11610704 ( 12) TGCGCGCT 1 chrIV:3384701-3384781 ( 66) CACTTTCT 1 chrII:10548971-10549051 ( 72) CGCTTTCT 1 chrII:1247037-1247117 ( 2) CTTTCTCT 1 chrI:6835329-6835409 ( 16) CTTTCTCT 1 chrV:13565361-13565441 ( 4) CGTTCTTT 1 chrV:15136902-15136982 ( 42) CTCTCTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCKCTCT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.84505 E= 3.3e-005 -1277 166 -1277 -31 75 -1277 72 -53 -1277 189 -1277 -212 -130 -1277 32 124 -1277 194 -1277 -312 -1277 -1277 -44 172 -1277 158 -1277 -3 -1277 -1277 -413 199 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCKCTCT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 70 E= 3.3e-005 0.000000 0.800000 0.000000 0.200000 0.414286 0.000000 0.414286 0.171429 0.000000 0.942857 0.000000 0.057143 0.100000 0.000000 0.314286 0.585714 0.000000 0.971429 0.000000 0.028571 0.000000 0.000000 0.185714 0.814286 0.000000 0.757143 0.000000 0.242857 0.000000 0.000000 0.014286 0.985714 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCKCTCT MEME-4 regular expression -------------------------------------------------------------------------------- [CT][AG]C[TG]CT[CT]T -------------------------------------------------------------------------------- Time 16.91 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGAGACC MEME-5 width = 8 sites = 15 llr = 160 E-value = 4.0e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGAGACC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::a:a:: pos.-specific C :9::::aa probability G a:a:a::: matrix T :1:::::: bits 2.0 * ****** 1.8 * ****** 1.6 * ****** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (15.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGAGACC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGACC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:8447123-8447203 41 1.58e-05 GTACATCGTT GCGAGACC CATGTAAAAT chrII:11874830-11874910 62 1.58e-05 CGCGTTCGCT GCGAGACC CGACGCTCTT chrIII:13463068-13463148 48 1.58e-05 TGCGAGCGTG GCGAGACC TGCAAAGTGC chrI:13653911-13653991 45 1.58e-05 CCTAATCGTG GCGAGACC CATCGAGATA chrIII:5228112-5228192 60 1.58e-05 CCATTTCGTT GCGAGACC CGCTGCCCCG chrIV:4445845-4445925 45 1.58e-05 CCACCTCGTT GCGAGACC CTTGCGTATC chrI:10553916-10553996 17 1.58e-05 TCAGCACGTG GCGAGACC CGACCTCGCA chrIII:6608298-6608378 33 1.58e-05 TCTGCTCGCT GCGAGACC CACGCGGCGG chrIV:11566311-11566391 43 1.58e-05 GCAAATCGCT GCGAGACC CAGCGTGCTG chrV:7776273-7776353 42 1.58e-05 GCTCTTCGCT GCGAGACC CGCGCTTTCG chrV:11228834-11228914 72 1.58e-05 AGATATCGCT GCGAGACC T chrIII:8130507-8130587 57 1.58e-05 ATAGATCGCT GCGAGACC AAACCGTCAG chrI:9422350-9422430 21 1.58e-05 ATATGTCGCC GCGAGACC GCATTCTGTC chrIII:1080714-1080794 58 3.12e-05 GCCTGTCGTG GTGAGACC CGATGGCGCG chrIII:5706411-5706491 27 3.12e-05 TCTCTTCTGT GTGAGACC CATAGGGGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGACC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:8447123-8447203 1.6e-05 40_[+5]_32 chrII:11874830-11874910 1.6e-05 61_[+5]_11 chrIII:13463068-13463148 1.6e-05 47_[+5]_25 chrI:13653911-13653991 1.6e-05 44_[+5]_28 chrIII:5228112-5228192 1.6e-05 59_[+5]_13 chrIV:4445845-4445925 1.6e-05 44_[+5]_28 chrI:10553916-10553996 1.6e-05 16_[+5]_56 chrIII:6608298-6608378 1.6e-05 32_[+5]_40 chrIV:11566311-11566391 1.6e-05 42_[+5]_30 chrV:7776273-7776353 1.6e-05 41_[+5]_31 chrV:11228834-11228914 1.6e-05 71_[+5]_1 chrIII:8130507-8130587 1.6e-05 56_[+5]_16 chrI:9422350-9422430 1.6e-05 20_[+5]_52 chrIII:1080714-1080794 3.1e-05 57_[+5]_15 chrIII:5706411-5706491 3.1e-05 26_[+5]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGACC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGAGACC width=8 seqs=15 chrIII:8447123-8447203 ( 41) GCGAGACC 1 chrII:11874830-11874910 ( 62) GCGAGACC 1 chrIII:13463068-13463148 ( 48) GCGAGACC 1 chrI:13653911-13653991 ( 45) GCGAGACC 1 chrIII:5228112-5228192 ( 60) GCGAGACC 1 chrIV:4445845-4445925 ( 45) GCGAGACC 1 chrI:10553916-10553996 ( 17) GCGAGACC 1 chrIII:6608298-6608378 ( 33) GCGAGACC 1 chrIV:11566311-11566391 ( 43) GCGAGACC 1 chrV:7776273-7776353 ( 42) GCGAGACC 1 chrV:11228834-11228914 ( 72) GCGAGACC 1 chrIII:8130507-8130587 ( 57) GCGAGACC 1 chrI:9422350-9422430 ( 21) GCGAGACC 1 chrIII:1080714-1080794 ( 58) GTGAGACC 1 chrIII:5706411-5706491 ( 27) GTGAGACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGACC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1725 E= 4.0e-004 -1055 -1055 199 -1055 -1055 177 -1055 -89 -1055 -1055 199 -1055 202 -1055 -1055 -1055 -1055 -1055 199 -1055 202 -1055 -1055 -1055 -1055 198 -1055 -1055 -1055 198 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGACC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 4.0e-004 0.000000 0.000000 1.000000 0.000000 0.000000 0.866667 0.000000 0.133333 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGAGACC MEME-5 regular expression -------------------------------------------------------------------------------- GCGAGACC -------------------------------------------------------------------------------- Time 20.34 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:6658944-6659024 3.97e-02 15_[+3(5.82e-05)]_57 chrI:12966450-12966530 8.27e-01 80 chrV:6656818-6656898 2.23e-01 80 chrIV:9196893-9196973 1.77e-02 56_[+1(7.63e-05)]_16 chrI:6542023-6542103 2.33e-03 25_[+4(6.36e-05)]_47 chrII:2748402-2748482 1.83e-03 29_[+1(1.54e-05)]_43 chrIII:10905281-10905361 3.22e-02 23_[+4(7.94e-05)]_37_[+4(7.94e-05)]_\ 4 chrIV:15696901-15696981 3.61e-02 27_[+4(7.94e-05)]_45 chrV:9273680-9273760 1.28e-03 4_[+3(2.93e-05)]_7_[+1(7.63e-05)]_\ 53 chrIV:4093281-4093361 1.21e-01 80 chrIV:6809949-6810029 1.92e-02 35_[+1(1.54e-05)]_37 chrIII:5640030-5640110 1.79e-02 13_[+2(6.30e-05)]_49_[+4(7.94e-05)]_\ 2 chrII:8796586-8796666 3.26e-02 1_[+3(8.70e-05)]_71 chrX:16930971-16931051 2.00e-01 80 chrIV:1070491-1070571 2.70e-02 50_[+1(1.54e-05)]_22 chrIV:11524369-11524449 1.53e-02 80 chrII:2280317-2280397 5.68e-01 80 chrV:20829032-20829112 8.01e-01 80 chrX:1909556-1909636 1.96e-01 80 chrIV:255592-255672 6.20e-01 80 chrI:6835329-6835409 2.31e-03 80 chrX:17181384-17181464 2.74e-03 29_[+4(1.57e-05)]_[+4(7.94e-05)]_35 chrIV:1274716-1274796 2.44e-02 59_[+4(1.57e-05)]_13 chrV:15136902-15136982 3.41e-02 80 chrIV:2676422-2676502 3.67e-01 80 chrI:12206679-12206759 2.49e-03 34_[+4(1.57e-05)]_7_[+2(1.57e-05)]_\ 23 chrV:7237285-7237365 2.09e-01 80 chrIV:6839121-6839201 1.75e-04 9_[+4(1.57e-05)]_4_[+4(1.57e-05)]_\ [+4(7.94e-05)]_43 chrII:7642235-7642315 7.48e-01 80 chrIV:7623865-7623945 5.31e-02 80 chrIV:12372042-12372122 4.93e-01 80 chrII:24607-24687 3.31e-01 80 chrX:4145668-4145748 2.27e-01 80 chrV:18079313-18079393 3.52e-03 80 chrIV:3338835-3338915 1.09e-01 80 chrV:4827163-4827243 9.35e-02 80 chrII:4999315-4999395 1.29e-02 59_[+3(2.93e-05)]_13 chrV:14366644-14366724 3.69e-01 80 chrX:10576591-10576671 3.51e-01 80 chrX:2971583-2971663 1.47e-02 80 chrX:17420168-17420248 1.29e-01 43_[+3(8.70e-05)]_29 chrII:13157121-13157201 5.63e-02 24_[+3(5.82e-05)]_48 chrI:9422350-9422430 1.13e-04 [+1(1.54e-05)]_12_[+5(1.58e-05)]_52 chrX:4395610-4395690 5.15e-02 80 chrI:12179547-12179627 1.92e-01 52_[+3(8.70e-05)]_20 chrX:13144718-13144798 5.47e-01 80 chrX:16024838-16024918 6.35e-02 80 chrI:9343853-9343933 3.48e-03 17_[+2(7.86e-05)]_5_[+4(1.57e-05)]_\ 42 chrI:12575777-12575857 4.76e-01 80 chrI:13951773-13951853 6.00e-01 80 chrII:13335237-13335317 6.83e-04 12_[+3(2.93e-05)]_[+3(2.93e-05)]_28_\ [+1(9.14e-05)]_2_[+1(1.54e-05)]_6 chrIII:1950337-1950417 3.06e-01 80 chrIV:6919489-6919569 3.07e-05 57_[+2(1.57e-05)]_1_[+4(1.57e-05)]_\ 6 chrI:12728070-12728150 6.69e-03 11_[+4(1.57e-05)]_61 chrIII:9546126-9546206 2.42e-01 80 chrIII:1785916-1785996 1.01e-02 64_[+4(1.57e-05)]_8 chrX:9337962-9338042 9.87e-01 80 chrI:6215571-6215651 1.57e-01 80 chrX:15535446-15535526 2.14e-01 80 chrX:1856352-1856432 4.32e-02 51_[+4(6.36e-05)]_21 chrIII:10634179-10634259 5.49e-01 80 chrII:1247037-1247117 3.85e-02 51_[+4(3.16e-05)]_21 chrX:4458044-4458124 7.59e-04 32_[+1(3.06e-05)]_28_[+1(1.54e-05)]_\ 4 chrX:3116356-3116436 8.17e-01 80 chrV:14136220-14136300 1.99e-02 29_[+3(2.93e-05)]_[+3(5.82e-05)]_35 chrIII:10284368-10284448 2.26e-01 80 chrIV:12724796-12724876 6.77e-01 80 chrX:8021832-8021912 6.97e-01 80 chrIII:11007871-11007951 1.60e-03 8_[+2(1.57e-05)]_2_[+4(1.57e-05)]_\ 54 chrIV:11809876-11809956 1.25e-01 80 chrIV:7402203-7402283 2.69e-03 2_[+1(3.06e-05)]_70 chrIV:1709899-1709979 9.52e-01 80 chrIV:10503874-10503954 1.31e-01 80 chrI:6314848-6314928 1.42e-01 80 chrV:14200262-14200342 1.39e-03 3_[+2(7.86e-05)]_5_[+4(1.57e-05)]_\ 56 chrII:14383780-14383860 5.81e-01 80 chrV:16965807-16965887 1.86e-03 40_[+1(1.54e-05)]_32 chrIII:8130507-8130587 1.31e-02 56_[+5(1.58e-05)]_16 chrIV:8379436-8379516 5.95e-01 80 chrIII:2528776-2528856 2.54e-01 80 chrX:11473630-11473710 3.47e-03 80 chrIV:3520556-3520636 9.36e-01 80 chrII:156070-156150 6.26e-01 80 chrIV:8432284-8432364 3.49e-01 80 chrI:9076258-9076338 1.96e-02 43_[+3(8.70e-05)]_29 chrV:11239334-11239414 8.85e-01 80 chrIII:5706411-5706491 1.59e-02 26_[+5(3.12e-05)]_46 chrIII:11142264-11142344 9.60e-03 43_[+4(6.36e-05)]_29 chrX:13396728-13396808 1.25e-01 80 chrI:12920702-12920782 8.63e-01 80 chrX:14640135-14640215 2.52e-01 30_[+2(6.30e-05)]_42 chrI:9097763-9097843 2.02e-03 38_[+3(2.93e-05)]_34 chrI:2291218-2291298 3.90e-03 42_[+1(1.54e-05)]_30 chrII:4044506-4044586 9.41e-01 80 chrX:1323199-1323279 6.93e-02 32_[+2(1.57e-05)]_40 chrV:11228834-11228914 1.62e-03 71_[+5(1.58e-05)]_1 chrIV:3384701-3384781 2.33e-02 7_[+2(1.57e-05)]_65 chrIV:10734660-10734740 8.71e-01 80 chrV:7776273-7776353 9.21e-06 15_[+1(3.06e-05)]_18_[+5(1.58e-05)]_\ 31 chrIII:25698-25778 1.19e-01 54_[+2(1.57e-05)]_18 chrX:10419898-10419978 2.30e-02 64_[+3(8.70e-05)]_8 chrIV:7791348-7791428 4.06e-01 80 chrX:11467575-11467655 4.15e-02 80 chrII:6347863-6347943 8.68e-02 80 chrI:11934296-11934376 4.97e-02 27_[+2(1.57e-05)]_45 chrV:17921554-17921634 2.19e-02 46_[+2(1.57e-05)]_26 chrIII:12599061-12599141 7.41e-01 80 chrII:5725261-5725341 2.86e-03 56_[+2(7.86e-05)]_16 chrV:15189709-15189789 4.22e-03 5_[+4(4.75e-05)]_67 chrX:4190727-4190807 8.44e-03 27_[+1(1.54e-05)]_45 chrX:2364860-2364940 9.49e-01 80 chrX:17184496-17184576 4.85e-03 3_[+4(9.47e-05)]_58_[+2(1.57e-05)]_\ 3 chrIV:11522690-11522770 8.56e-04 6_[+1(1.54e-05)]_66 chrI:2996345-2996425 7.15e-01 80 chrX:4960641-4960721 2.03e-01 80 chrIV:8587188-8587268 2.26e-02 80 chrX:17544488-17544568 4.33e-01 80 chrIII:9780772-9780852 3.92e-01 80 chrX:2237565-2237645 8.42e-04 46_[+1(1.54e-05)]_26 chrV:18723763-18723843 2.24e-02 19_[+4(1.57e-05)]_10_[+4(1.57e-05)]_\ 35 chrIV:11566311-11566391 4.55e-03 42_[+5(1.58e-05)]_30 chrI:5699150-5699230 1.07e-02 12_[+2(1.57e-05)]_60 chrV:14347376-14347456 7.36e-01 80 chrIII:4018213-4018293 6.65e-01 80 chrIII:11657349-11657429 3.35e-02 57_[+2(1.57e-05)]_15 chrX:15189487-15189567 1.07e-02 48_[+4(3.16e-05)]_24 chrIII:1080714-1080794 7.98e-04 3_[+3(2.93e-05)]_46_[+5(3.12e-05)]_\ 15 chrX:6840989-6841069 5.15e-01 80 chrI:1481712-1481792 5.93e-02 80 chrI:12524456-12524536 3.57e-02 20_[+4(7.94e-05)]_52 chrX:1389492-1389572 5.34e-01 80 chrX:14016947-14017027 5.14e-04 18_[+2(1.57e-05)]_45_[+3(8.70e-05)]_\ 1 chrIII:9631487-9631567 3.80e-01 80 chrX:2536589-2536669 4.79e-06 1_[+3(5.82e-05)]_20_[+4(7.94e-05)]_\ 6_[+4(7.94e-05)]_29 chrIII:8797255-8797335 7.18e-01 80 chrIV:11149737-11149817 9.92e-01 80 chrX:15607013-15607093 1.73e-01 80 chrV:18990413-18990493 6.59e-01 80 chrIV:14464238-14464318 7.03e-02 80 chrV:10715907-10715987 2.58e-02 80 chrIV:2177716-2177796 3.29e-01 80 chrIII:5855954-5856034 3.56e-01 80 chrI:9113128-9113208 5.58e-01 80 chrI:14945808-14945888 3.14e-01 80 chrIII:13466416-13466496 8.34e-02 80 chrI:9380332-9380412 6.18e-02 34_[+1(7.63e-05)]_38 chrV:15766349-15766429 4.14e-01 80 chrII:9646268-9646348 2.00e-01 9_[+3(5.82e-05)]_63 chrI:2401628-2401708 8.49e-01 80 chrII:15010583-15010663 2.61e-02 80 chrX:2688710-2688790 9.31e-02 80 chrX:4389036-4389116 5.53e-03 40_[+4(1.57e-05)]_1_[+4(7.94e-05)]_\ 1_[+4(1.57e-05)]_14 chrV:15511768-15511848 5.13e-01 80 chrV:6879628-6879708 6.48e-02 80 chrV:2600692-2600772 3.10e-01 80 chrII:13872647-13872727 6.34e-04 29_[+1(1.54e-05)]_43 chrIII:3068069-3068149 6.95e-01 80 chrIII:6375151-6375231 3.51e-02 80 chrI:12995747-12995827 4.95e-01 80 chrX:14841174-14841254 2.83e-03 9_[+3(8.70e-05)]_63 chrIII:6608298-6608378 1.55e-03 32_[+5(1.58e-05)]_40 chrX:9999920-10000000 1.82e-01 80 chrII:10548971-10549051 3.44e-02 14_[+2(1.57e-05)]_58 chrV:1474671-1474751 4.14e-02 53_[+2(7.86e-05)]_19 chrIV:16492432-16492512 3.66e-02 47_[+1(1.54e-05)]_25 chrI:15034054-15034134 1.52e-01 80 chrX:7181773-7181853 3.46e-01 80 chrIII:5785763-5785843 7.39e-01 80 chrI:382491-382571 5.06e-01 80 chrX:10637529-10637609 1.18e-02 47_[+1(1.54e-05)]_25 chrII:7945309-7945389 8.41e-01 80 chrI:7021441-7021521 1.90e-01 80 chrX:15607706-15607786 1.41e-01 80 chrI:10553916-10553996 3.15e-02 16_[+5(1.58e-05)]_56 chrX:5729234-5729314 5.65e-04 39_[+3(2.93e-05)]_33 chrII:13447768-13447848 2.21e-01 80 chrII:6250924-6251004 1.01e-01 26_[+2(1.57e-05)]_46 chrIV:4445845-4445925 1.59e-01 44_[+5(1.58e-05)]_28 chrIII:6421167-6421247 3.85e-04 18_[+1(1.54e-05)]_28_[+2(1.57e-05)]_\ 18 chrIII:4754315-4754395 3.34e-01 80 chrII:411010-411090 1.22e-02 80 chrIV:14767868-14767948 2.19e-02 17_[+2(1.57e-05)]_55 chrIV:10919396-10919476 1.50e-01 80 chrI:13514328-13514408 9.32e-03 45_[+2(1.57e-05)]_27 chrI:1067099-1067179 1.21e-01 80 chrII:13976322-13976402 9.92e-01 80 chrV:773389-773469 7.92e-04 27_[+2(1.57e-05)]_13_[+4(1.57e-05)]_\ 24 chrX:14312608-14312688 1.53e-01 25_[+2(6.30e-05)]_47 chrI:4584828-4584908 5.10e-01 80 chrIII:3863055-3863135 5.57e-02 80 chrI:8816549-8816629 9.73e-01 80 chrI:13337274-13337354 2.47e-01 80 chrIII:1926608-1926688 8.77e-01 80 chrII:11224085-11224165 9.58e-01 80 chrI:4270522-4270602 4.57e-01 80 chrIII:5228112-5228192 9.39e-03 59_[+5(1.58e-05)]_13 chrV:10894781-10894861 8.07e-01 80 chrIV:5657287-5657367 2.12e-02 12_[+1(1.54e-05)]_48_[+1(7.63e-05)]_\ 4 chrIV:15471557-15471637 5.16e-04 56_[+1(1.54e-05)]_16 chrII:9113036-9113116 1.48e-04 5_[+2(1.57e-05)]_27_[+3(5.82e-05)]_\ 14_[+3(2.93e-05)]_10 chrX:17513707-17513787 3.23e-02 8_[+4(3.16e-05)]_64 chrV:10965640-10965720 8.54e-01 80 chrX:14146907-14146987 7.84e-03 80 chrX:16298252-16298332 6.16e-02 80 chrII:10872657-10872737 8.78e-01 80 chrX:1454481-1454561 1.46e-01 80 chrI:8813389-8813469 1.40e-02 53_[+1(1.54e-05)]_19 chrV:6053443-6053523 1.37e-01 12_[+1(7.63e-05)]_60 chrX:16147913-16147993 6.02e-05 3_[+3(2.93e-05)]_21_[+4(7.94e-05)]_\ 40 chrIV:4390634-4390714 4.61e-01 80 chrIII:7208059-7208139 1.03e-01 33_[+1(7.63e-05)]_39 chrX:8368300-8368380 2.04e-01 80 chrIV:1420302-1420382 4.82e-01 80 chrI:3516468-3516548 2.17e-01 80 chrV:12728401-12728481 2.25e-01 80 chrIV:8432911-8432991 1.51e-02 37_[+1(1.54e-05)]_35 chrIII:9456246-9456326 3.90e-03 29_[+1(3.06e-05)]_43 chrI:13653911-13653991 4.75e-02 44_[+5(1.58e-05)]_28 chrV:13565361-13565441 1.46e-04 62_[+1(9.14e-05)]_10 chrIII:7179800-7179880 3.70e-01 80 chrIV:7580385-7580465 6.40e-02 50_[+3(2.93e-05)]_22 chrIII:13463068-13463148 3.86e-02 47_[+5(1.58e-05)]_25 chrX:10568547-10568627 9.38e-01 80 chrIV:15472528-15472608 3.17e-04 55_[+1(1.54e-05)]_17 chrX:7334525-7334605 8.16e-02 31_[+2(6.30e-05)]_41 chrV:13086110-13086190 9.20e-02 80 chrX:14708340-14708420 9.35e-01 80 chrX:2242926-2243006 9.00e-02 80 chrIV:16865680-16865760 7.84e-01 80 chrI:9163478-9163558 6.08e-01 80 chrII:11747101-11747181 6.89e-02 80 chrX:7068520-7068600 8.14e-01 80 chrI:1873922-1874002 7.31e-01 80 chrI:6799635-6799715 2.84e-01 80 chrX:13514549-13514629 9.75e-01 80 chrIV:2725974-2726054 8.16e-01 80 chrI:13756494-13756574 1.03e-02 45_[+1(7.63e-05)]_27 chrII:11874830-11874910 1.01e-02 61_[+5(1.58e-05)]_11 chrII:10868932-10869012 2.90e-02 80 chrV:11610624-11610704 1.05e-01 80 chrV:13715407-13715487 3.26e-02 80 chrI:8426840-8426920 5.50e-02 80 chrIII:10707173-10707253 7.91e-01 80 chrIII:8164012-8164092 9.52e-01 80 chrIV:6790572-6790652 2.19e-03 26_[+4(4.75e-05)]_36_[+3(8.70e-05)]_\ 2 chrII:8185159-8185239 8.83e-01 80 chrV:10536984-10537064 4.60e-01 80 chrIII:13061288-13061368 5.26e-03 49_[+2(1.57e-05)]_23 chrIII:8447123-8447203 3.43e-02 40_[+5(1.58e-05)]_32 chrV:5917894-5917974 8.01e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c23n05.farnam.hpc.yale.internal ********************************************************************************