******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-8.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:8250739-8250819 1.0000 80 chrII:6101634-6101714 1.0000 80 chrV:11156748-11156828 1.0000 80 chrIV:10437273-10437353 1.0000 80 chrIV:10429288-10429368 1.0000 80 chrIII:447019-447099 1.0000 80 chrV:8681168-8681248 1.0000 80 chrI:5341342-5341422 1.0000 80 chrV:14554644-14554724 1.0000 80 chrV:11204077-11204157 1.0000 80 chrII:340343-340423 1.0000 80 chrIV:3770929-3771009 1.0000 80 chrI:3651373-3651453 1.0000 80 chrV:15294142-15294222 1.0000 80 chrX:12957080-12957160 1.0000 80 chrII:377259-377339 1.0000 80 chrX:16563465-16563545 1.0000 80 chrV:1933787-1933867 1.0000 80 chrV:8981118-8981198 1.0000 80 chrIV:3348509-3348589 1.0000 80 chrX:8332613-8332693 1.0000 80 chrV:1720055-1720135 1.0000 80 chrII:2903861-2903941 1.0000 80 chrV:11590018-11590098 1.0000 80 chrX:8528761-8528841 1.0000 80 chrV:8921923-8922003 1.0000 80 chrII:5239486-5239566 1.0000 80 chrI:7297237-7297317 1.0000 80 chrIII:802190-802270 1.0000 80 chrX:11276352-11276432 1.0000 80 chrIII:7026037-7026117 1.0000 80 chrII:13018370-13018450 1.0000 80 chrX:4816166-4816246 1.0000 80 chrI:10752695-10752775 1.0000 80 chrV:2037232-2037312 1.0000 80 chrI:12688523-12688603 1.0000 80 chrV:2050942-2051022 1.0000 80 chrX:9831412-9831492 1.0000 80 chrIV:2689058-2689138 1.0000 80 chrII:11765678-11765758 1.0000 80 chrX:14344828-14344908 1.0000 80 chrX:6197943-6198023 1.0000 80 chrIII:9984754-9984834 1.0000 80 chrIV:3846759-3846839 1.0000 80 chrII:6579007-6579087 1.0000 80 chrIV:403216-403296 1.0000 80 chrX:13775609-13775689 1.0000 80 chrX:12907074-12907154 1.0000 80 chrV:15384770-15384850 1.0000 80 chrX:1364582-1364662 1.0000 80 chrII:11513898-11513978 1.0000 80 chrIII:448646-448726 1.0000 80 chrIV:1522490-1522570 1.0000 80 chrI:8029788-8029868 1.0000 80 chrI:8247612-8247692 1.0000 80 chrI:9487475-9487555 1.0000 80 chrIII:10019985-10020065 1.0000 80 chrI:7117642-7117722 1.0000 80 chrV:12389275-12389355 1.0000 80 chrV:14583085-14583165 1.0000 80 chrV:11706514-11706594 1.0000 80 chrX:13303497-13303577 1.0000 80 chrIV:9493865-9493945 1.0000 80 chrV:10154032-10154112 1.0000 80 chrX:8927018-8927098 1.0000 80 chrV:12576015-12576095 1.0000 80 chrIII:1647613-1647693 1.0000 80 chrII:10737203-10737283 1.0000 80 chrI:6005558-6005638 1.0000 80 chrX:3987860-3987940 1.0000 80 chrII:13936913-13936993 1.0000 80 chrX:13280868-13280948 1.0000 80 chrX:8523159-8523239 1.0000 80 chrIV:9012672-9012752 1.0000 80 chrIV:100945-101025 1.0000 80 chrX:3002782-3002862 1.0000 80 chrX:8329625-8329705 1.0000 80 chrX:12595393-12595473 1.0000 80 chrI:12558034-12558114 1.0000 80 chrV:14405806-14405886 1.0000 80 chrV:20094063-20094143 1.0000 80 chrV:5482553-5482633 1.0000 80 chrV:16017106-16017186 1.0000 80 chrV:11710214-11710294 1.0000 80 chrX:13932309-13932389 1.0000 80 chrIV:6850985-6851065 1.0000 80 chrV:842752-842832 1.0000 80 chrX:3726688-3726768 1.0000 80 chrII:11034639-11034719 1.0000 80 chrI:921496-921576 1.0000 80 chrX:12551819-12551899 1.0000 80 chrIII:3765565-3765645 1.0000 80 chrII:6002344-6002424 1.0000 80 chrX:11942822-11942902 1.0000 80 chrX:11304219-11304299 1.0000 80 chrX:11769647-11769727 1.0000 80 chrII:6288383-6288463 1.0000 80 chrV:11636540-11636620 1.0000 80 chrX:7371021-7371101 1.0000 80 chrIV:8141957-8142037 1.0000 80 chrX:10514194-10514274 1.0000 80 chrI:8253234-8253314 1.0000 80 chrX:8953131-8953211 1.0000 80 chrX:4638544-4638624 1.0000 80 chrI:9496757-9496837 1.0000 80 chrII:12530478-12530558 1.0000 80 chrV:4432987-4433067 1.0000 80 chrX:8438571-8438651 1.0000 80 chrIV:2998064-2998144 1.0000 80 chrII:5994107-5994187 1.0000 80 chrX:7300614-7300694 1.0000 80 chrIII:10030633-10030713 1.0000 80 chrX:2734842-2734922 1.0000 80 chrV:12021886-12021966 1.0000 80 chrI:14034380-14034460 1.0000 80 chrI:14581596-14581676 1.0000 80 chrV:15023783-15023863 1.0000 80 chrX:8341612-8341692 1.0000 80 chrI:8538345-8538425 1.0000 80 chrIV:605591-605671 1.0000 80 chrII:3777951-3778031 1.0000 80 chrV:1850120-1850200 1.0000 80 chrI:10835387-10835467 1.0000 80 chrIII:788020-788100 1.0000 80 chrX:10163233-10163313 1.0000 80 chrIV:12134994-12135074 1.0000 80 chrX:5970247-5970327 1.0000 80 chrV:16693157-16693237 1.0000 80 chrIII:1639504-1639584 1.0000 80 chrX:1778225-1778305 1.0000 80 chrII:4663371-4663451 1.0000 80 chrIII:7243127-7243207 1.0000 80 chrI:7710954-7711034 1.0000 80 chrV:1946073-1946153 1.0000 80 chrIII:8413693-8413773 1.0000 80 chrV:16989-17069 1.0000 80 chrIII:9585454-9585534 1.0000 80 chrIII:6077539-6077619 1.0000 80 chrX:10387608-10387688 1.0000 80 chrIV:7268086-7268166 1.0000 80 chrI:6628730-6628810 1.0000 80 chrX:12306418-12306498 1.0000 80 chrV:19817790-19817870 1.0000 80 chrIII:11611827-11611907 1.0000 80 chrX:13615130-13615210 1.0000 80 chrX:11050497-11050577 1.0000 80 chrI:6403418-6403498 1.0000 80 chrIII:3271395-3271475 1.0000 80 chrIV:1232580-1232660 1.0000 80 chrV:4640660-4640740 1.0000 80 chrV:4387676-4387756 1.0000 80 chrV:1949543-1949623 1.0000 80 chrIII:8199000-8199080 1.0000 80 chrIII:444122-444202 1.0000 80 chrV:10260998-10261078 1.0000 80 chrI:4591215-4591295 1.0000 80 chrIII:10241589-10241669 1.0000 80 chrX:10553193-10553273 1.0000 80 chrX:9629701-9629781 1.0000 80 chrX:3725596-3725676 1.0000 80 chrII:5136459-5136539 1.0000 80 chrIV:7269112-7269192 1.0000 80 chrI:1342765-1342845 1.0000 80 chrIII:353181-353261 1.0000 80 chrII:6229714-6229794 1.0000 80 chrIV:426799-426879 1.0000 80 chrX:8921468-8921548 1.0000 80 chrX:10650277-10650357 1.0000 80 chrII:12494319-12494399 1.0000 80 chrV:13884654-13884734 1.0000 80 chrIV:8630411-8630491 1.0000 80 chrI:849356-849436 1.0000 80 chrX:7643640-7643720 1.0000 80 chrV:3884674-3884754 1.0000 80 chrIV:12525637-12525717 1.0000 80 chrIV:4920007-4920087 1.0000 80 chrIII:8962634-8962714 1.0000 80 chrIII:13019879-13019959 1.0000 80 chrIV:3386008-3386088 1.0000 80 chrI:5722338-5722418 1.0000 80 chrI:14990109-14990189 1.0000 80 chrV:1718370-1718450 1.0000 80 chrII:8396254-8396334 1.0000 80 chrI:11736132-11736212 1.0000 80 chrII:9690226-9690306 1.0000 80 chrV:10947335-10947415 1.0000 80 chrX:1204551-1204631 1.0000 80 chrII:6995748-6995828 1.0000 80 chrV:10874603-10874683 1.0000 80 chrX:11279555-11279635 1.0000 80 chrIII:10633198-10633278 1.0000 80 chrX:11400156-11400236 1.0000 80 chrII:12526671-12526751 1.0000 80 chrIV:10084725-10084805 1.0000 80 chrII:13469742-13469822 1.0000 80 chrV:8342850-8342930 1.0000 80 chrV:19541057-19541137 1.0000 80 chrII:14087116-14087196 1.0000 80 chrV:13646089-13646169 1.0000 80 chrII:8611385-8611465 1.0000 80 chrIV:15854242-15854322 1.0000 80 chrI:6746255-6746335 1.0000 80 chrI:14838596-14838676 1.0000 80 chrIII:11467755-11467835 1.0000 80 chrX:14514549-14514629 1.0000 80 chrI:13707396-13707476 1.0000 80 chrI:1817734-1817814 1.0000 80 chrI:800026-800106 1.0000 80 chrI:11061072-11061152 1.0000 80 chrI:881853-881933 1.0000 80 chrV:1935681-1935761 1.0000 80 chrII:7588452-7588532 1.0000 80 chrIV:1709130-1709210 1.0000 80 chrIV:2127525-2127605 1.0000 80 chrV:14325009-14325089 1.0000 80 chrI:13546150-13546230 1.0000 80 chrII:6468267-6468347 1.0000 80 chrV:19805721-19805801 1.0000 80 chrX:15651179-15651259 1.0000 80 chrV:14556375-14556455 1.0000 80 chrX:11920875-11920955 1.0000 80 chrX:6353911-6353991 1.0000 80 chrV:1199365-1199445 1.0000 80 chrX:9711999-9712079 1.0000 80 chrX:9287372-9287452 1.0000 80 chrII:5956197-5956277 1.0000 80 chrV:14319490-14319570 1.0000 80 chrI:2377183-2377263 1.0000 80 chrV:14336868-14336948 1.0000 80 chrV:8680139-8680219 1.0000 80 chrX:2731573-2731653 1.0000 80 chrX:8805650-8805730 1.0000 80 chrIV:4264823-4264903 1.0000 80 chrI:8250087-8250167 1.0000 80 chrIV:5902873-5902953 1.0000 80 chrX:4383747-4383827 1.0000 80 chrV:7379551-7379631 1.0000 80 chrII:12260675-12260755 1.0000 80 chrX:1704930-1705010 1.0000 80 chrI:8244834-8244914 1.0000 80 chrIV:1521447-1521527 1.0000 80 chrII:5951701-5951781 1.0000 80 chrX:8337143-8337223 1.0000 80 chrX:12034862-12034942 1.0000 80 chrX:2464196-2464276 1.0000 80 chrII:9838752-9838832 1.0000 80 chrI:10167617-10167697 1.0000 80 chrII:6813979-6814059 1.0000 80 chrV:10465604-10465684 1.0000 80 chrV:1252744-1252824 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ceh-8/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-8.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.301 C 0.195 G 0.211 T 0.294 Background letter frequencies (from file dataset with add-one prior applied): A 0.301 C 0.195 G 0.211 T 0.294 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CCSCCCSC MEME-1 width = 8 sites = 24 llr = 224 E-value = 2.5e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCSCCCSC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::2:2 pos.-specific C aa48a578 probability G ::6::13: matrix T :::2:1:: bits 2.4 ** * 2.1 ** * 1.9 ** * 1.7 ** ** * Relative 1.4 ***** ** Entropy 1.2 ***** ** (13.5 bits) 0.9 ***** ** 0.7 ***** ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCGCCCCC consensus C AG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCCSC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:2127525-2127605 39 2.26e-06 tccacctcct ccgccccc gcatccacct chrV:19541057-19541137 69 2.26e-06 ccccccccga ccgccccc AATT chrIII:11467755-11467835 43 4.35e-06 CTTccccccc cccccccc ctcccctccA chrI:849356-849436 1 4.35e-06 . cccccccc AAAAAGTGCG chrX:13775609-13775689 47 4.35e-06 cccccccccc cccccccc ccccTCTCCC chrIV:3348509-3348589 20 4.35e-06 AGCACCACCC CCCCCCCC CCCGCAAATT chrIV:3386008-3386088 48 6.80e-06 AAGATGGAGG CCGCCCGC GAGGACGAGT chrII:12494319-12494399 70 1.26e-05 GCAGCATCCT CCGCCACC TCC chrV:4432987-4433067 46 1.26e-05 gccgccgcca ccgccacc tcctccgcat chrII:14087116-14087196 47 1.50e-05 AACTCCACCG CCGCCGCC GCCGGCGGAG chrV:15023783-15023863 47 2.16e-05 GCTGAAATGC CCGCCTCC TATCTTGAAA chrV:12576015-12576095 42 2.16e-05 tcctccacct ccgcctcc gcatcctcca chrII:11765678-11765758 4 2.73e-05 CCC CCGTCCCC CTCATGGGGG chrX:11279555-11279635 4 3.08e-05 ACT CCGCCCCA TATGCAGTAC chrIV:605591-605671 2 3.08e-05 G CCGCCCCA GCTGAAGCAG chrV:1199365-1199445 62 3.77e-05 AAAATTGGCG CCGCCAGC CGACAGCCGC chrII:2903861-2903941 23 3.77e-05 GCCTGCTCAG CCGCCAGC TCCACGAGAT chrI:921496-921576 45 4.09e-05 ACTTTCAATT CCCTCCCC TAATTATCCG chrI:1817734-1817814 47 4.68e-05 TGCACCGACG CCGCCGGC GCTTCTCAAT chrX:8805650-8805730 52 5.03e-05 CGGCGACGAT CCCCCAGC TCTTGATTTC chrI:881853-881933 35 5.39e-05 GAAGACGAGT CCGCCTGC GTCTCTGCAG chrI:800026-800106 54 7.07e-05 GGGAAGGGAC CCCTCCGC GCGACACCTC chrV:8981118-8981198 55 1.55e-04 TGATTAAAAT CCCTCCCA TGGGATTTTA chrIV:4264823-4264903 33 1.94e-04 CCACCAGGAT CCCCCGGA GCACCCGGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCCSC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:2127525-2127605 2.3e-06 38_[+1]_34 chrV:19541057-19541137 2.3e-06 68_[+1]_4 chrIII:11467755-11467835 4.4e-06 42_[+1]_30 chrI:849356-849436 4.4e-06 [+1]_72 chrX:13775609-13775689 4.4e-06 46_[+1]_26 chrIV:3348509-3348589 4.4e-06 19_[+1]_53 chrIV:3386008-3386088 6.8e-06 47_[+1]_25 chrII:12494319-12494399 1.3e-05 69_[+1]_3 chrV:4432987-4433067 1.3e-05 45_[+1]_27 chrII:14087116-14087196 1.5e-05 46_[+1]_26 chrV:15023783-15023863 2.2e-05 46_[+1]_26 chrV:12576015-12576095 2.2e-05 41_[+1]_31 chrII:11765678-11765758 2.7e-05 3_[+1]_69 chrX:11279555-11279635 3.1e-05 3_[+1]_69 chrIV:605591-605671 3.1e-05 1_[+1]_71 chrV:1199365-1199445 3.8e-05 61_[+1]_11 chrII:2903861-2903941 3.8e-05 22_[+1]_50 chrI:921496-921576 4.1e-05 44_[+1]_28 chrI:1817734-1817814 4.7e-05 46_[+1]_26 chrX:8805650-8805730 5e-05 51_[+1]_21 chrI:881853-881933 5.4e-05 34_[+1]_38 chrI:800026-800106 7.1e-05 53_[+1]_19 chrV:8981118-8981198 0.00015 54_[+1]_18 chrIV:4264823-4264903 0.00019 32_[+1]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCCSC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCSCCCSC width=8 seqs=24 chrIV:2127525-2127605 ( 39) CCGCCCCC 1 chrV:19541057-19541137 ( 69) CCGCCCCC 1 chrIII:11467755-11467835 ( 43) CCCCCCCC 1 chrI:849356-849436 ( 1) CCCCCCCC 1 chrX:13775609-13775689 ( 47) CCCCCCCC 1 chrIV:3348509-3348589 ( 20) CCCCCCCC 1 chrIV:3386008-3386088 ( 48) CCGCCCGC 1 chrII:12494319-12494399 ( 70) CCGCCACC 1 chrV:4432987-4433067 ( 46) CCGCCACC 1 chrII:14087116-14087196 ( 47) CCGCCGCC 1 chrV:15023783-15023863 ( 47) CCGCCTCC 1 chrV:12576015-12576095 ( 42) CCGCCTCC 1 chrII:11765678-11765758 ( 4) CCGTCCCC 1 chrX:11279555-11279635 ( 4) CCGCCCCA 1 chrIV:605591-605671 ( 2) CCGCCCCA 1 chrV:1199365-1199445 ( 62) CCGCCAGC 1 chrII:2903861-2903941 ( 23) CCGCCAGC 1 chrI:921496-921576 ( 45) CCCTCCCC 1 chrI:1817734-1817814 ( 47) CCGCCGGC 1 chrX:8805650-8805730 ( 52) CCCCCAGC 1 chrI:881853-881933 ( 35) CCGCCTGC 1 chrI:800026-800106 ( 54) CCCTCCGC 1 chrV:8981118-8981198 ( 55) CCCTCCCA 1 chrIV:4264823-4264903 ( 33) CCCCCGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCCSC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.477 E= 2.5e-005 -1123 236 -1123 -1123 -1123 236 -1123 -1123 -1123 95 157 -1123 -1123 210 -1123 -82 -1123 236 -1123 -1123 -53 148 -75 -123 -1123 178 66 -1123 -85 210 -1123 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCCSC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 2.5e-005 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.375000 0.625000 0.000000 0.000000 0.833333 0.000000 0.166667 0.000000 1.000000 0.000000 0.000000 0.208333 0.541667 0.125000 0.125000 0.000000 0.666667 0.333333 0.000000 0.166667 0.833333 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCSCCCSC MEME-1 regular expression -------------------------------------------------------------------------------- CC[GC]CC[CA][CG]C -------------------------------------------------------------------------------- Time 8.74 secs. ******************************************************************************** ******************************************************************************** MOTIF GGSGGGGG MEME-2 width = 8 sites = 22 llr = 217 E-value = 1.4e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGSGGGGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::21: pos.-specific C ::6:::3: probability G aa4aa86a matrix T :::::::: bits 2.4 * * 2.1 * * 1.9 ** ** * 1.7 ** ** * Relative 1.4 ****** * Entropy 1.2 ****** * (14.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCGGGGG consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGGGGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:8805650-8805730 1 3.63e-06 . GGCGGGGG TGTCCGCGGA chrIII:7026037-7026117 67 3.63e-06 TGGAGGCGGC GGCGGGGG TCCTCC chrX:4383747-4383827 4 7.56e-06 ggg gggggggg ggggCTTTTC chrX:2731573-2731653 16 7.56e-06 aagggggggg gggggggg ggggATAACT chrI:800026-800106 17 7.56e-06 AGCAAGAGGG GGGGGGGG GGGTCTAATC chrIII:10633198-10633278 8 7.56e-06 TCggggg gggggggg ggggggCCAG chrI:849356-849436 58 7.56e-06 gggagggggg gggggggg gggggCTGTG chrI:1342765-1342845 35 7.56e-06 Tgggggaggg gggggggg gggggggggg chrV:16693157-16693237 32 7.56e-06 gggagggggg gggggggg ggggCAGTGG chrI:11736132-11736212 57 1.09e-05 aagcggtagc ggcgggcg gtagcgggcg chrV:842752-842832 44 1.09e-05 agcgggcgtc ggcgggcg tcagcgggcg chrV:2050942-2051022 34 1.09e-05 cggaggtggt ggcgggcg tccccatggt chrI:5341342-5341422 66 1.09e-05 CGGCTGGGGA GGCGGGCG AGGTGGA chrII:11765678-11765758 17 1.45e-05 TCCCCCTCAT GGGGGGCG AGGGACGCCC chrI:2377183-2377263 30 1.97e-05 CGGATTCGGA GGCGGAGG AGGAGGAACA chrII:14087116-14087196 58 1.97e-05 CGCCGCCGCC GGCGGAGG AGCAGAAGcc chrIII:8962634-8962714 28 1.97e-05 cggtggagga ggcggagg atgcggagga chrX:2734842-2734922 35 3.05e-05 ATTTCCAGTT GGCGGGAG ACCTTTTTCC chrV:13646089-13646169 9 4.76e-05 cgggcgcg ggcgcggg cacgagcacg chrX:10514194-10514274 15 4.76e-05 AGTATAAGTT GGCCGGGG AGTGACTTTT chrV:1850120-1850200 25 8.18e-05 agcgggcgtc agcgggcg tcagcgggcg chrIII:11467755-11467835 20 1.09e-04 AGAAGAAGAA GGGGGAAG GAGGTCTTcc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGGGGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:8805650-8805730 3.6e-06 [+2]_72 chrIII:7026037-7026117 3.6e-06 66_[+2]_6 chrX:4383747-4383827 7.6e-06 3_[+2]_69 chrX:2731573-2731653 7.6e-06 15_[+2]_57 chrI:800026-800106 7.6e-06 16_[+2]_56 chrIII:10633198-10633278 7.6e-06 7_[+2]_65 chrI:849356-849436 7.6e-06 57_[+2]_15 chrI:1342765-1342845 7.6e-06 34_[+2]_38 chrV:16693157-16693237 7.6e-06 31_[+2]_41 chrI:11736132-11736212 1.1e-05 56_[+2]_16 chrV:842752-842832 1.1e-05 43_[+2]_29 chrV:2050942-2051022 1.1e-05 33_[+2]_39 chrI:5341342-5341422 1.1e-05 65_[+2]_7 chrII:11765678-11765758 1.5e-05 16_[+2]_56 chrI:2377183-2377263 2e-05 29_[+2]_43 chrII:14087116-14087196 2e-05 57_[+2]_15 chrIII:8962634-8962714 2e-05 27_[+2]_45 chrX:2734842-2734922 3.1e-05 34_[+2]_38 chrV:13646089-13646169 4.8e-05 8_[+2]_64 chrX:10514194-10514274 4.8e-05 14_[+2]_58 chrV:1850120-1850200 8.2e-05 24_[+2]_48 chrIII:11467755-11467835 0.00011 19_[+2]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGGGGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGSGGGGG width=8 seqs=22 chrX:8805650-8805730 ( 1) GGCGGGGG 1 chrIII:7026037-7026117 ( 67) GGCGGGGG 1 chrX:4383747-4383827 ( 4) GGGGGGGG 1 chrX:2731573-2731653 ( 16) GGGGGGGG 1 chrI:800026-800106 ( 17) GGGGGGGG 1 chrIII:10633198-10633278 ( 8) GGGGGGGG 1 chrI:849356-849436 ( 58) GGGGGGGG 1 chrI:1342765-1342845 ( 35) GGGGGGGG 1 chrV:16693157-16693237 ( 32) GGGGGGGG 1 chrI:11736132-11736212 ( 57) GGCGGGCG 1 chrV:842752-842832 ( 44) GGCGGGCG 1 chrV:2050942-2051022 ( 34) GGCGGGCG 1 chrI:5341342-5341422 ( 66) GGCGGGCG 1 chrII:11765678-11765758 ( 17) GGGGGGCG 1 chrI:2377183-2377263 ( 30) GGCGGAGG 1 chrII:14087116-14087196 ( 58) GGCGGAGG 1 chrIII:8962634-8962714 ( 28) GGCGGAGG 1 chrX:2734842-2734922 ( 35) GGCGGGAG 1 chrV:13646089-13646169 ( 9) GGCGCGGG 1 chrX:10514194-10514274 ( 15) GGCCGGGG 1 chrV:1850120-1850200 ( 25) AGCGGGCG 1 chrIII:11467755-11467835 ( 20) GGGGGAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGGGGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.229 E= 1.4e-008 -272 -1110 218 -1110 -1110 -1110 225 -1110 -1110 160 96 -1110 -1110 -210 218 -1110 -1110 -210 218 -1110 -73 -1110 196 -1110 -173 49 160 -1110 -1110 -1110 225 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGGGGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 1.4e-008 0.045455 0.000000 0.954545 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.590909 0.409091 0.000000 0.000000 0.045455 0.954545 0.000000 0.000000 0.045455 0.954545 0.000000 0.181818 0.000000 0.818182 0.000000 0.090909 0.272727 0.636364 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGGGGG MEME-2 regular expression -------------------------------------------------------------------------------- GG[CG]GGG[GC]G -------------------------------------------------------------------------------- Time 12.50 secs. ******************************************************************************** ******************************************************************************** MOTIF GGAGSYGG MEME-3 width = 8 sites = 24 llr = 212 E-value = 9.9e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAGSYGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::6::::: pos.-specific C :32:55:: probability G a72a52aa matrix T :::::4:: bits 2.4 * * ** 2.1 * * ** 1.9 * * ** 1.7 * * ** Relative 1.4 ** ** ** Entropy 1.2 ** ** ** (12.8 bits) 0.9 ** ** ** 0.7 ** ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGAGGCGG consensus CC CT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGSYGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:14319490-14319570 54 9.97e-06 agctggttct ggagccgg agctggagct chrIV:1709130-1709210 35 9.97e-06 ATGTGGAACC GGAGCCGG AAGCTGTCGA chrIII:8962634-8962714 1 9.97e-06 . ggaggcgg cggaggatgc chrIV:605591-605671 34 9.97e-06 AGCCGCCGAA GGAGCCGG AGGAGGAGCC chrV:2050942-2051022 16 9.97e-06 tggtggtcct ggaggcgg cggaggtggt chrIII:7026037-7026117 4 9.97e-06 cca ggaggcgg cggaggtggt chrI:3651373-3651453 29 9.97e-06 tgctggagct ggagccgg ttcaggggcg chrI:5341342-5341422 51 9.97e-06 CGGAGGCCGC GGAGGCGG CTGGGGAGGC chrIII:11611827-11611907 25 1.64e-05 CCACGGTCGC GGCGCCGG TCTCAGCGGT chrV:14325009-14325089 34 3.14e-05 tgctggtgct ggagctgg cgctggttct chrIII:13019879-13019959 44 3.14e-05 AGGATCGTCG GGAGGTGG CCGTCCGGGA chrI:849356-849436 49 5.84e-05 GAGAAAATCg ggaggggg gggggggggg chrV:16693157-16693237 23 5.84e-05 CTGCgggggg ggaggggg gggggggggg chrX:8805650-8805730 28 6.82e-05 AACTCTTGGT GGCGGTGG GGGTGGCGGC chrI:1817734-1817814 12 7.41e-05 CGTTGACGCT GCCGGCGG CGCTTCTCAA chrIII:10633198-10633278 57 8.80e-05 CGCCAAGGCA GCAGCTGG CTCGGTGCCA chrV:4432987-4433067 13 8.80e-05 gtaggcagca gcagctgg agcAACAGCG chrX:2731573-2731653 58 9.86e-05 TCCACCGTGG GGGGCTGG GTTTCGCGAG chrI:11736132-11736212 32 1.05e-04 gcgggtggca gcgggcgg tagcggcaag chrV:13646089-13646169 39 1.12e-04 cgcaaatgcc ggcgcggg ttcaggcggg chrI:1342765-1342845 43 1.39e-04 gggggggggg gggggggg gggggTCTCG chrIV:1232580-1232660 68 1.39e-04 TGGGggagct gccggtgg agctg chrV:1199365-1199445 2 1.48e-04 T GCGGCTGG TACAGCCAGC chrII:5994107-5994187 3 2.19e-04 AA GCTGGTGG GAATGAGAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGSYGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:14319490-14319570 1e-05 53_[+3]_19 chrIV:1709130-1709210 1e-05 34_[+3]_38 chrIII:8962634-8962714 1e-05 [+3]_72 chrIV:605591-605671 1e-05 33_[+3]_39 chrV:2050942-2051022 1e-05 15_[+3]_57 chrIII:7026037-7026117 1e-05 3_[+3]_69 chrI:3651373-3651453 1e-05 28_[+3]_44 chrI:5341342-5341422 1e-05 50_[+3]_22 chrIII:11611827-11611907 1.6e-05 24_[+3]_48 chrV:14325009-14325089 3.1e-05 33_[+3]_39 chrIII:13019879-13019959 3.1e-05 43_[+3]_29 chrI:849356-849436 5.8e-05 48_[+3]_24 chrV:16693157-16693237 5.8e-05 22_[+3]_50 chrX:8805650-8805730 6.8e-05 27_[+3]_45 chrI:1817734-1817814 7.4e-05 11_[+3]_61 chrIII:10633198-10633278 8.8e-05 56_[+3]_16 chrV:4432987-4433067 8.8e-05 12_[+3]_60 chrX:2731573-2731653 9.9e-05 57_[+3]_15 chrI:11736132-11736212 0.00011 31_[+3]_41 chrV:13646089-13646169 0.00011 38_[+3]_34 chrI:1342765-1342845 0.00014 42_[+3]_30 chrIV:1232580-1232660 0.00014 67_[+3]_5 chrV:1199365-1199445 0.00015 1_[+3]_71 chrII:5994107-5994187 0.00022 2_[+3]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGSYGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAGSYGG width=8 seqs=24 chrV:14319490-14319570 ( 54) GGAGCCGG 1 chrIV:1709130-1709210 ( 35) GGAGCCGG 1 chrIII:8962634-8962714 ( 1) GGAGGCGG 1 chrIV:605591-605671 ( 34) GGAGCCGG 1 chrV:2050942-2051022 ( 16) GGAGGCGG 1 chrIII:7026037-7026117 ( 4) GGAGGCGG 1 chrI:3651373-3651453 ( 29) GGAGCCGG 1 chrI:5341342-5341422 ( 51) GGAGGCGG 1 chrIII:11611827-11611907 ( 25) GGCGCCGG 1 chrV:14325009-14325089 ( 34) GGAGCTGG 1 chrIII:13019879-13019959 ( 44) GGAGGTGG 1 chrI:849356-849436 ( 49) GGAGGGGG 1 chrV:16693157-16693237 ( 23) GGAGGGGG 1 chrX:8805650-8805730 ( 28) GGCGGTGG 1 chrI:1817734-1817814 ( 12) GCCGGCGG 1 chrIII:10633198-10633278 ( 57) GCAGCTGG 1 chrV:4432987-4433067 ( 13) GCAGCTGG 1 chrX:2731573-2731653 ( 58) GGGGCTGG 1 chrI:11736132-11736212 ( 32) GCGGGCGG 1 chrV:13646089-13646169 ( 39) GGCGCGGG 1 chrI:1342765-1342845 ( 43) GGGGGGGG 1 chrIV:1232580-1232660 ( 68) GCCGGTGG 1 chrV:1199365-1199445 ( 2) GCGGCTGG 1 chrII:5994107-5994187 ( 3) GCTGGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGSYGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.155 E= 9.9e+000 -1123 -1123 225 -1123 -1123 58 175 -1123 95 10 -34 -281 -1123 -1123 225 -1123 -1123 124 136 -1123 -1123 124 -34 35 -1123 -1123 225 -1123 -1123 -1123 225 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGSYGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 9.9e+000 0.000000 0.000000 1.000000 0.000000 0.000000 0.291667 0.708333 0.000000 0.583333 0.208333 0.166667 0.041667 0.000000 0.000000 1.000000 0.000000 0.000000 0.458333 0.541667 0.000000 0.000000 0.458333 0.166667 0.375000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGSYGG MEME-3 regular expression -------------------------------------------------------------------------------- G[GC][AC]G[GC][CT]GG -------------------------------------------------------------------------------- Time 16.18 secs. ******************************************************************************** ******************************************************************************** MOTIF WTYTAATT MEME-4 width = 8 sites = 119 llr = 727 E-value = 1.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif WTYTAATT MEME-4 Description -------------------------------------------------------------------------------- Simplified A 422:8a:: pos.-specific C 2:53:::: probability G :2::2::: matrix T 4547::aa bits 2.4 2.1 1.9 1.7 *** Relative 1.4 *** Entropy 1.2 ***** (8.8 bits) 0.9 ***** 0.7 ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTCTAATT consensus AATC sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTYTAATT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:6628730-6628810 40 3.88e-05 GACACAGAAC TTCTAATT ATGACTGAAA chrI:7710954-7711034 8 3.88e-05 ATCTGAC TTCTAATT CAATAATTCA chrIV:100945-101025 45 3.88e-05 AATCTGTCGT TTCTAATT TGCATTTTTT chrX:13280868-13280948 63 3.88e-05 GTTTTATTCA TTCTAATT TTGATTCAAT chrIII:353181-353261 72 7.85e-05 ATCTAACGTC ATCTAATT T chrIV:12134994-12135074 73 7.85e-05 TCTGTACTTA ATCTAATT chrX:8953131-8953211 9 7.85e-05 AGCTAATC ATCTAATT GAAAATAATG chrX:3987860-3987940 63 7.85e-05 AGCAATTTGC ATCTAATT GACTTTTACT chrX:9287372-9287452 19 1.91e-04 GACGCGACTC TGCTAATT AAATTGCAAT chrX:11920875-11920955 15 1.91e-04 TGTTTCTTAA TGCTAATT GTCTTCAATT chrV:10947335-10947415 46 1.91e-04 AGTTCTGTCA TGCTAATT AAAATATTTC chrV:3884674-3884754 18 1.91e-04 TCGCATCACT TTTTAATT TACTAATTAT chrII:6229714-6229794 59 1.91e-04 TTCGTCATTT TGCTAATT GAGCTATGAT chrI:4591215-4591295 66 1.91e-04 TGTTTTTAAT TTTTAATT GATAGGC chrX:8341612-8341692 21 1.91e-04 TTAATGGATG TTTTAATT TCGACCAGCA chrV:11636540-11636620 52 1.91e-04 GGTTACCGAC TGCTAATT GGGAATGAGT chrV:11710214-11710294 11 1.91e-04 CACAGATTTA TGCTAATT TGTACCCAAA chrV:5482553-5482633 69 1.91e-04 TTCATTCGCT TTTTAATT TTGT chrV:8921923-8922003 50 1.91e-04 ATTAAATTAC TTTTAATT GAGCAATGAT chrV:8981118-8981198 68 1.91e-04 TCCCATGGGA TTTTAATT TTAAG chrV:1933787-1933867 6 1.91e-04 TAATG TTTTAATT AATTCTTTAC chrV:11156748-11156828 29 1.91e-04 GACAAAGCAT TTTTAATT GTAATGTGCA chrII:5956197-5956277 41 3.31e-04 TTTTGTATTT CTCTAATT AGGTTTGTTA chrII:12526671-12526751 8 3.31e-04 aaatata atttaatt taaAAATGAG chrII:9690226-9690306 35 3.31e-04 CGCCTCAATT ATCCAATT ATCCCATTAG chrIII:10241589-10241669 38 3.31e-04 GTGTCTACAA ATCCAATT ATTCCATTAG chrV:4640660-4640740 5 3.31e-04 GCGT ATCCAATT CTCTCGTGAT chrX:12306418-12306498 31 3.31e-04 AATCAATCTT CTCTAATT GGTTTCTGGT chrIII:7243127-7243207 48 3.31e-04 AACCATTGAA ATTTAATT AATCACCGTG chrX:10514194-10514274 58 3.31e-04 CGAGCGACTA ATTTAATT TATTCACTAA chrV:20094063-20094143 10 3.31e-04 TAGCGCATT ATTTAATT GAATTACCAT chrI:8029788-8029868 46 3.31e-04 TAGATAACGA AGCTAATT ATTTCTTTAA chrIII:9984754-9984834 68 3.31e-04 ATACGGATTT ATCCAATT ACTGT chrX:14344828-14344908 46 3.31e-04 AGTCACCGTA ATTTAATT ATCATGCAGC chrI:10752695-10752775 48 3.31e-04 CGGTACTTTA ATTTAATT GTCATTCCAC chrX:8528761-8528841 17 3.31e-04 ATCGTTGTAC AGCTAATT GCTCAAAAGT chrX:12034862-12034942 6 3.71e-04 GGGCA TACTAATT AGCAAAATAC chrI:13546150-13546230 73 3.71e-04 TATTATAGTA TACTAATT chrV:15384770-15384850 62 3.71e-04 TCGTTTCTTC TACTAATT TCAATATGTT chrII:377259-377339 39 3.71e-04 ATCCCATTAT TACTAATT TTCATGATTT chrII:5951701-5951781 29 5.11e-04 CTCAAAATTA TGCCAATT AAACATGCGC chrV:14336868-14336948 23 5.11e-04 TCAAATTATC TTTCAATT CTCTACTCCT chrIII:6077539-6077619 66 5.11e-04 AAATTGAATT TTTCAATT TCAAAAA chrII:4663371-4663451 42 5.11e-04 CTTTTATACT TTTCAATT ATTCAATTAT chrI:921496-921576 37 5.11e-04 CGAAAAAAAC TTTCAATT CCCTCCCCTA chrIV:1521447-1521527 20 7.14e-04 GATTCCCCAC TTCTGATT CAACACTTCT chrI:2377183-2377263 12 7.14e-04 GATAGACGGA TTCTGATT CGGATTCGGA chrX:9711999-9712079 13 7.14e-04 AGTTAGGTGA AGCCAATT TGAGTCAGTT chrI:13707396-13707476 47 7.14e-04 AAAATTAACA ATTCAATT AACTCAGATA chrX:11400156-11400236 67 7.14e-04 TTAAACGGTA ATTCAATT ACACGC chrII:12494319-12494399 44 7.14e-04 GGTCCGGCGG CTCCAATT CCGCAAGAGC chrIII:8199000-8199080 39 7.14e-04 GCACATTAAA AGCCAATT TGAATATGTT chrX:13615130-13615210 18 7.14e-04 GCTCCTCGTT ATTCAATT AGTCAATTCA chrI:8538345-8538425 1 7.14e-04 . AGTTAATT AAGTTAAGAG chrI:8253234-8253314 40 7.14e-04 ACAACAAGAA ATTCAATT GAAGTGAAAA chrX:11304219-11304299 64 7.14e-04 TAGACACAAT TTCTGATT TATTCGTTT chrX:12551819-12551899 46 7.14e-04 CAGGCGGAAA AGTTAATT TTCAGATTCT chrIV:6850985-6851065 65 7.14e-04 AAAAAGGAGG AGCCAATT AGAGAAGT chrV:10154032-10154112 42 7.14e-04 AGAACCAATC CGCTAATT ATTCATTCAA chrV:12389275-12389355 18 7.14e-04 TTATAATCAT TTCTGATT CATTTCATCG chrI:9487475-9487555 7 7.14e-04 TGTCTG CGCTAATT GAGTTACTGC chrV:14554644-14554724 25 7.14e-04 GTATTCCATT ATTCAATT AATTAGTTTT chrIV:10429288-10429368 34 7.14e-04 ACAAAAGAGT ATTCAATT AGTGCAGAGC chrX:1364582-1364662 20 7.42e-04 AAAAATCCAA ATCTGATT AACATTTGCG chrII:5239486-5239566 15 7.42e-04 GAAAAAAATT ATCTGATT TGGAATAAGG chrI:14990109-14990189 17 8.88e-04 TTTTTCAACT TTATAATT GAGTACAAAT chrX:7300614-7300694 61 8.88e-04 TAGGCAGTTG TATTAATT GGTCGGCACT chrII:13936913-13936993 55 8.88e-04 TTATTGAATA TTATAATT ACTTGTCATC chrI:8247612-8247692 42 8.88e-04 ATCTACCGTA TACCAATT AGTAAGTTGT chrIV:1522490-1522570 24 8.88e-04 AATCGTATGA TTATAATT AACAAGTACA chrII:6579007-6579087 44 8.88e-04 GTGAGTTGAT TATTAATT TTAACTCATT chrI:6746255-6746335 49 1.06e-03 AGGAAATCAA ATATAATT GTCGTTTCAT chrX:7643640-7643720 55 1.06e-03 TACAGTATAC CACTAATT CGCTTGACAA chrIII:444122-444202 28 1.06e-03 TGACGTCAAT CACTAATT AATGTTCCCA chrIII:788020-788100 55 1.06e-03 AGAGTGGGGT CACTAATT GTTGTCTTGT chrIII:10030633-10030713 14 1.06e-03 GTGTGTAACA AACCAATT TCCAAATGAG chrIV:2998064-2998144 36 1.06e-03 GACGATGCCT CACTAATT AAGTAAAAAG chrX:13932309-13932389 2 1.06e-03 C AATTAATT ATCAGATGAC chrV:16017106-16017186 31 1.06e-03 CATTTTTCGT AATTAATT TCAACTAGTC chrI:12558034-12558114 70 1.06e-03 CGTCACGTAC AATTAATT AGT chrX:8329625-8329705 21 1.06e-03 GTCGCTTGGG AATTAATT ATCTCTGACG chrX:3002782-3002862 64 1.06e-03 TTAGCAGACT CACTAATT GTTTATTGA chrI:12688523-12688603 41 1.06e-03 CCAACAATCC CACTAATT GAAAGTATGA chrV:1720055-1720135 61 1.06e-03 TGTGAGTAAT ATATAATT ATGTTTTGTA chrI:8250739-8250819 38 1.06e-03 AATAATTTGG ATATAATT TGACAAAATA chrX:6353911-6353991 54 1.26e-03 CAATTACTCA TGCTGATT CAGATGATGA chrX:14514549-14514629 36 1.26e-03 AGATTTCATA CGTTAATT AGTCATTTTT chrI:5722338-5722418 52 1.26e-03 TCGTAATTAG TTTTGATT GCGTCGTGGT chrX:10163233-10163313 15 1.26e-03 TATTCTTCAA CTTCAATT TGGTTCTAAC chrX:8438571-8438651 71 1.26e-03 TTCACTTTTA TTTTGATT CT chrV:11706514-11706594 23 1.26e-03 AGTTGTTTTC AGTCAATT TCGGACCCTA chrX:11276352-11276432 61 1.26e-03 TTCGTCACGT TTTTGATT GTCATCCTGC chrX:8332613-8332693 58 1.26e-03 ACGTAAATAA TGCTGATT ATCGTGTTAC chrII:8611385-8611465 11 1.36e-03 TTCCTTATCC CTCTGATT ATTAAATTAA chrV:10260998-10261078 8 1.36e-03 ACCTGCA ATTTGATT AAAAATTATA chrV:8342850-8342930 53 1.49e-03 AGAAAAATGT TGATAATT GAGTTAGCAA chrIV:4920007-4920087 29 1.49e-03 TACTCATATT TATCAATT TATCAGGAAG chrIV:9493865-9493945 62 1.49e-03 TATCAAATGA TTACAATT AGTATTCTCT chrII:5136459-5136539 1 1.74e-03 . AATCAATT GGCTTAATTT chrI:6403418-6403498 69 1.74e-03 ATTTTAATAA ATACAATT CGAG chrII:3777951-3778031 16 1.74e-03 ATTCGAAAGC CTATAATT GATCACAAAA chrIII:447019-447099 17 1.76e-03 TCTAAACGTC AACTGATT CATCAGTCAT chrV:10465604-10465684 14 1.91e-03 TCATTAAAAT TAATAATT TCATTGTGCG chrII:6995748-6995828 40 1.91e-03 TGTTTTATTT CGTCAATT TCTTTTTTCC chrIV:7269112-7269192 37 1.91e-03 CAATGCTTGT TTTCGATT AAAAACTCGT chrII:5994107-5994187 46 1.91e-03 AACGATGACG TGCCGATT TTTTGACTTG chrX:8927018-8927098 11 1.91e-03 GAATGTATAA TAATAATT AGCTAAATTC chrIV:1709130-1709210 73 2.10e-03 GACACGAATC CTCCGATT chrII:13469742-13469822 59 2.10e-03 ACAATCATGT AAATAATT GATGATGATG chrII:6002344-6002424 40 2.10e-03 CGCCAACTCA AAATAATT CCTAACGTTG chrIV:3846759-3846839 30 2.10e-03 GTTGCGGAAT AAATAATT TATTTACTGC chrIV:3770929-3771009 36 2.10e-03 TTATTATGTT AGTTGATT GATTAATGAA chrI:14581596-14581676 70 2.13e-03 AGTTGTCATA TGACAATT GTC chrII:13018370-13018450 34 2.13e-03 GCACTTTTCG TGACAATT TTCACAGTTT chrIV:5902873-5902953 39 2.34e-03 TGAACCCAAT TACCGATT TATTCAGTTG chrII:7588452-7588532 37 2.34e-03 ATCGTCGATG CGATAATT TGACAAGAGG chrX:12957080-12957160 48 2.34e-03 ATCAAAAGTC TTATGATT GCACTTGAAA chrII:10737203-10737283 46 2.46e-03 CAGAGGGTAA ATATGATT TATTCAAAAA chrI:7117642-7117722 49 2.46e-03 AATTAATACA AATTGATT TTCTAAGAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTYTAATT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:6628730-6628810 3.9e-05 39_[+4]_33 chrI:7710954-7711034 3.9e-05 7_[+4]_65 chrIV:100945-101025 3.9e-05 44_[+4]_28 chrX:13280868-13280948 3.9e-05 62_[+4]_10 chrIII:353181-353261 7.9e-05 71_[+4]_1 chrIV:12134994-12135074 7.9e-05 72_[+4] chrX:8953131-8953211 7.9e-05 8_[+4]_64 chrX:3987860-3987940 7.9e-05 62_[+4]_10 chrX:9287372-9287452 0.00019 18_[+4]_54 chrX:11920875-11920955 0.00019 14_[+4]_58 chrV:10947335-10947415 0.00019 45_[+4]_27 chrV:3884674-3884754 0.00019 17_[+4]_55 chrII:6229714-6229794 0.00019 58_[+4]_14 chrI:4591215-4591295 0.00019 65_[+4]_7 chrX:8341612-8341692 0.00019 20_[+4]_52 chrV:11636540-11636620 0.00019 51_[+4]_21 chrV:11710214-11710294 0.00019 10_[+4]_62 chrV:5482553-5482633 0.00019 68_[+4]_4 chrV:8921923-8922003 0.00019 49_[+4]_23 chrV:8981118-8981198 0.00019 67_[+4]_5 chrV:1933787-1933867 0.00019 5_[+4]_67 chrV:11156748-11156828 0.00019 28_[+4]_44 chrII:5956197-5956277 0.00033 40_[+4]_32 chrII:12526671-12526751 0.00033 7_[+4]_65 chrII:9690226-9690306 0.00033 34_[+4]_38 chrIII:10241589-10241669 0.00033 37_[+4]_35 chrV:4640660-4640740 0.00033 4_[+4]_68 chrX:12306418-12306498 0.00033 30_[+4]_42 chrIII:7243127-7243207 0.00033 47_[+4]_25 chrX:10514194-10514274 0.00033 57_[+4]_15 chrV:20094063-20094143 0.00033 9_[+4]_63 chrI:8029788-8029868 0.00033 45_[+4]_27 chrIII:9984754-9984834 0.00033 67_[+4]_5 chrX:14344828-14344908 0.00033 45_[+4]_27 chrI:10752695-10752775 0.00033 47_[+4]_25 chrX:8528761-8528841 0.00033 16_[+4]_56 chrX:12034862-12034942 0.00037 5_[+4]_67 chrI:13546150-13546230 0.00037 72_[+4] chrV:15384770-15384850 0.00037 61_[+4]_11 chrII:377259-377339 0.00037 38_[+4]_34 chrII:5951701-5951781 0.00051 28_[+4]_44 chrV:14336868-14336948 0.00051 22_[+4]_50 chrIII:6077539-6077619 0.00051 65_[+4]_7 chrII:4663371-4663451 0.00051 41_[+4]_31 chrI:921496-921576 0.00051 36_[+4]_36 chrIV:1521447-1521527 0.00071 19_[+4]_53 chrI:2377183-2377263 0.00071 11_[+4]_61 chrX:9711999-9712079 0.00071 12_[+4]_60 chrI:13707396-13707476 0.00071 46_[+4]_26 chrX:11400156-11400236 0.00071 66_[+4]_6 chrII:12494319-12494399 0.00071 43_[+4]_29 chrIII:8199000-8199080 0.00071 38_[+4]_34 chrX:13615130-13615210 0.00071 17_[+4]_55 chrI:8538345-8538425 0.00071 [+4]_72 chrI:8253234-8253314 0.00071 39_[+4]_33 chrX:11304219-11304299 0.00071 63_[+4]_9 chrX:12551819-12551899 0.00071 45_[+4]_27 chrIV:6850985-6851065 0.00071 64_[+4]_8 chrV:10154032-10154112 0.00071 41_[+4]_31 chrV:12389275-12389355 0.00071 17_[+4]_55 chrI:9487475-9487555 0.00071 6_[+4]_66 chrV:14554644-14554724 0.00071 24_[+4]_48 chrIV:10429288-10429368 0.00071 33_[+4]_39 chrX:1364582-1364662 0.00074 19_[+4]_53 chrII:5239486-5239566 0.00074 14_[+4]_58 chrI:14990109-14990189 0.00089 16_[+4]_56 chrX:7300614-7300694 0.00089 60_[+4]_12 chrII:13936913-13936993 0.00089 54_[+4]_18 chrI:8247612-8247692 0.00089 41_[+4]_31 chrIV:1522490-1522570 0.00089 23_[+4]_49 chrII:6579007-6579087 0.00089 43_[+4]_29 chrI:6746255-6746335 0.0011 48_[+4]_24 chrX:7643640-7643720 0.0011 54_[+4]_18 chrIII:444122-444202 0.0011 27_[+4]_45 chrIII:788020-788100 0.0011 54_[+4]_18 chrIII:10030633-10030713 0.0011 13_[+4]_59 chrIV:2998064-2998144 0.0011 35_[+4]_37 chrX:13932309-13932389 0.0011 1_[+4]_71 chrV:16017106-16017186 0.0011 30_[+4]_42 chrI:12558034-12558114 0.0011 69_[+4]_3 chrX:8329625-8329705 0.0011 20_[+4]_52 chrX:3002782-3002862 0.0011 63_[+4]_9 chrI:12688523-12688603 0.0011 40_[+4]_32 chrV:1720055-1720135 0.0011 60_[+4]_12 chrI:8250739-8250819 0.0011 37_[+4]_35 chrX:6353911-6353991 0.0013 53_[+4]_19 chrX:14514549-14514629 0.0013 35_[+4]_37 chrI:5722338-5722418 0.0013 51_[+4]_21 chrX:10163233-10163313 0.0013 14_[+4]_58 chrX:8438571-8438651 0.0013 70_[+4]_2 chrV:11706514-11706594 0.0013 22_[+4]_50 chrX:11276352-11276432 0.0013 60_[+4]_12 chrX:8332613-8332693 0.0013 57_[+4]_15 chrII:8611385-8611465 0.0014 10_[+4]_62 chrV:10260998-10261078 0.0014 7_[+4]_65 chrV:8342850-8342930 0.0015 52_[+4]_20 chrIV:4920007-4920087 0.0015 28_[+4]_44 chrIV:9493865-9493945 0.0015 61_[+4]_11 chrII:5136459-5136539 0.0017 [+4]_72 chrI:6403418-6403498 0.0017 68_[+4]_4 chrII:3777951-3778031 0.0017 15_[+4]_57 chrIII:447019-447099 0.0018 16_[+4]_56 chrV:10465604-10465684 0.0019 13_[+4]_59 chrII:6995748-6995828 0.0019 39_[+4]_33 chrIV:7269112-7269192 0.0019 36_[+4]_36 chrII:5994107-5994187 0.0019 45_[+4]_27 chrX:8927018-8927098 0.0019 10_[+4]_62 chrIV:1709130-1709210 0.0021 72_[+4] chrII:13469742-13469822 0.0021 58_[+4]_14 chrII:6002344-6002424 0.0021 39_[+4]_33 chrIV:3846759-3846839 0.0021 29_[+4]_43 chrIV:3770929-3771009 0.0021 35_[+4]_37 chrI:14581596-14581676 0.0021 69_[+4]_3 chrII:13018370-13018450 0.0021 33_[+4]_39 chrIV:5902873-5902953 0.0023 38_[+4]_34 chrII:7588452-7588532 0.0023 36_[+4]_36 chrX:12957080-12957160 0.0023 47_[+4]_25 chrII:10737203-10737283 0.0025 45_[+4]_27 chrI:7117642-7117722 0.0025 48_[+4]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTYTAATT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WTYTAATT width=8 seqs=119 chrI:6628730-6628810 ( 40) TTCTAATT 1 chrI:7710954-7711034 ( 8) TTCTAATT 1 chrIV:100945-101025 ( 45) TTCTAATT 1 chrX:13280868-13280948 ( 63) TTCTAATT 1 chrIII:353181-353261 ( 72) ATCTAATT 1 chrIV:12134994-12135074 ( 73) ATCTAATT 1 chrX:8953131-8953211 ( 9) ATCTAATT 1 chrX:3987860-3987940 ( 63) ATCTAATT 1 chrX:9287372-9287452 ( 19) TGCTAATT 1 chrX:11920875-11920955 ( 15) TGCTAATT 1 chrV:10947335-10947415 ( 46) TGCTAATT 1 chrV:3884674-3884754 ( 18) TTTTAATT 1 chrII:6229714-6229794 ( 59) TGCTAATT 1 chrI:4591215-4591295 ( 66) TTTTAATT 1 chrX:8341612-8341692 ( 21) TTTTAATT 1 chrV:11636540-11636620 ( 52) TGCTAATT 1 chrV:11710214-11710294 ( 11) TGCTAATT 1 chrV:5482553-5482633 ( 69) TTTTAATT 1 chrV:8921923-8922003 ( 50) TTTTAATT 1 chrV:8981118-8981198 ( 68) TTTTAATT 1 chrV:1933787-1933867 ( 6) TTTTAATT 1 chrV:11156748-11156828 ( 29) TTTTAATT 1 chrII:5956197-5956277 ( 41) CTCTAATT 1 chrII:12526671-12526751 ( 8) ATTTAATT 1 chrII:9690226-9690306 ( 35) ATCCAATT 1 chrIII:10241589-10241669 ( 38) ATCCAATT 1 chrV:4640660-4640740 ( 5) ATCCAATT 1 chrX:12306418-12306498 ( 31) CTCTAATT 1 chrIII:7243127-7243207 ( 48) ATTTAATT 1 chrX:10514194-10514274 ( 58) ATTTAATT 1 chrV:20094063-20094143 ( 10) ATTTAATT 1 chrI:8029788-8029868 ( 46) AGCTAATT 1 chrIII:9984754-9984834 ( 68) ATCCAATT 1 chrX:14344828-14344908 ( 46) ATTTAATT 1 chrI:10752695-10752775 ( 48) ATTTAATT 1 chrX:8528761-8528841 ( 17) AGCTAATT 1 chrX:12034862-12034942 ( 6) TACTAATT 1 chrI:13546150-13546230 ( 73) TACTAATT 1 chrV:15384770-15384850 ( 62) TACTAATT 1 chrII:377259-377339 ( 39) TACTAATT 1 chrII:5951701-5951781 ( 29) TGCCAATT 1 chrV:14336868-14336948 ( 23) TTTCAATT 1 chrIII:6077539-6077619 ( 66) TTTCAATT 1 chrII:4663371-4663451 ( 42) TTTCAATT 1 chrI:921496-921576 ( 37) TTTCAATT 1 chrIV:1521447-1521527 ( 20) TTCTGATT 1 chrI:2377183-2377263 ( 12) TTCTGATT 1 chrX:9711999-9712079 ( 13) AGCCAATT 1 chrI:13707396-13707476 ( 47) ATTCAATT 1 chrX:11400156-11400236 ( 67) ATTCAATT 1 chrII:12494319-12494399 ( 44) CTCCAATT 1 chrIII:8199000-8199080 ( 39) AGCCAATT 1 chrX:13615130-13615210 ( 18) ATTCAATT 1 chrI:8538345-8538425 ( 1) AGTTAATT 1 chrI:8253234-8253314 ( 40) ATTCAATT 1 chrX:11304219-11304299 ( 64) TTCTGATT 1 chrX:12551819-12551899 ( 46) AGTTAATT 1 chrIV:6850985-6851065 ( 65) AGCCAATT 1 chrV:10154032-10154112 ( 42) CGCTAATT 1 chrV:12389275-12389355 ( 18) TTCTGATT 1 chrI:9487475-9487555 ( 7) CGCTAATT 1 chrV:14554644-14554724 ( 25) ATTCAATT 1 chrIV:10429288-10429368 ( 34) ATTCAATT 1 chrX:1364582-1364662 ( 20) ATCTGATT 1 chrII:5239486-5239566 ( 15) ATCTGATT 1 chrI:14990109-14990189 ( 17) TTATAATT 1 chrX:7300614-7300694 ( 61) TATTAATT 1 chrII:13936913-13936993 ( 55) TTATAATT 1 chrI:8247612-8247692 ( 42) TACCAATT 1 chrIV:1522490-1522570 ( 24) TTATAATT 1 chrII:6579007-6579087 ( 44) TATTAATT 1 chrI:6746255-6746335 ( 49) ATATAATT 1 chrX:7643640-7643720 ( 55) CACTAATT 1 chrIII:444122-444202 ( 28) CACTAATT 1 chrIII:788020-788100 ( 55) CACTAATT 1 chrIII:10030633-10030713 ( 14) AACCAATT 1 chrIV:2998064-2998144 ( 36) CACTAATT 1 chrX:13932309-13932389 ( 2) AATTAATT 1 chrV:16017106-16017186 ( 31) AATTAATT 1 chrI:12558034-12558114 ( 70) AATTAATT 1 chrX:8329625-8329705 ( 21) AATTAATT 1 chrX:3002782-3002862 ( 64) CACTAATT 1 chrI:12688523-12688603 ( 41) CACTAATT 1 chrV:1720055-1720135 ( 61) ATATAATT 1 chrI:8250739-8250819 ( 38) ATATAATT 1 chrX:6353911-6353991 ( 54) TGCTGATT 1 chrX:14514549-14514629 ( 36) CGTTAATT 1 chrI:5722338-5722418 ( 52) TTTTGATT 1 chrX:10163233-10163313 ( 15) CTTCAATT 1 chrX:8438571-8438651 ( 71) TTTTGATT 1 chrV:11706514-11706594 ( 23) AGTCAATT 1 chrX:11276352-11276432 ( 61) TTTTGATT 1 chrX:8332613-8332693 ( 58) TGCTGATT 1 chrII:8611385-8611465 ( 11) CTCTGATT 1 chrV:10260998-10261078 ( 8) ATTTGATT 1 chrV:8342850-8342930 ( 53) TGATAATT 1 chrIV:4920007-4920087 ( 29) TATCAATT 1 chrIV:9493865-9493945 ( 62) TTACAATT 1 chrII:5136459-5136539 ( 1) AATCAATT 1 chrI:6403418-6403498 ( 69) ATACAATT 1 chrII:3777951-3778031 ( 16) CTATAATT 1 chrIII:447019-447099 ( 17) AACTGATT 1 chrV:10465604-10465684 ( 14) TAATAATT 1 chrII:6995748-6995828 ( 40) CGTCAATT 1 chrIV:7269112-7269192 ( 37) TTTCGATT 1 chrII:5994107-5994187 ( 46) TGCCGATT 1 chrX:8927018-8927098 ( 11) TAATAATT 1 chrIV:1709130-1709210 ( 73) CTCCGATT 1 chrII:13469742-13469822 ( 59) AAATAATT 1 chrII:6002344-6002424 ( 40) AAATAATT 1 chrIV:3846759-3846839 ( 30) AAATAATT 1 chrIV:3770929-3771009 ( 36) AGTTGATT 1 chrI:14581596-14581676 ( 70) TGACAATT 1 chrII:13018370-13018450 ( 34) TGACAATT 1 chrIV:5902873-5902953 ( 39) TACCGATT 1 chrII:7588452-7588532 ( 37) CGATAATT 1 chrX:12957080-12957160 ( 48) TTATGATT 1 chrII:10737203-10737283 ( 46) ATATGATT 1 chrI:7117642-7117722 ( 49) AATTGATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTYTAATT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.95894 E= 1.1e+003 42 -36 -1354 60 -36 -1354 11 87 -84 122 -1354 36 -1354 55 -1354 128 144 -1354 -19 -1354 173 -1354 -1354 -1354 -1354 -1354 -1354 177 -1354 -1354 -1354 177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTYTAATT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 119 E= 1.1e+003 0.403361 0.151261 0.000000 0.445378 0.235294 0.000000 0.226891 0.537815 0.168067 0.453782 0.000000 0.378151 0.000000 0.285714 0.000000 0.714286 0.815126 0.000000 0.184874 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTYTAATT MEME-4 regular expression -------------------------------------------------------------------------------- [TA][TAG][CT][TC]AATT -------------------------------------------------------------------------------- Time 19.82 secs. ******************************************************************************** ******************************************************************************** MOTIF SCTCCTCC MEME-5 width = 8 sites = 9 llr = 92 E-value = 3.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCTCCTCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::2::1:: pos.-specific C 7a:a8:aa probability G 3:::2::: matrix T ::8::9:: bits 2.4 * * ** 2.1 * * ** 1.9 * * ** 1.7 * ** ** Relative 1.4 ** ** ** Entropy 1.2 ** ***** (14.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCTCCTCC consensus G A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCTCCTCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:4432987-4433067 64 4.75e-06 tcctccgcat cctcctcc gcaggctgg chrV:12576015-12576095 66 4.75e-06 tccacctcct cctcctcc gcatcct chrII:14087116-14087196 2 9.89e-06 G GCTCCTCC ACAGAAAGTG chrIV:2689058-2689138 67 9.89e-06 tcctccacgg gctcctcc acgagc chrIV:2127525-2127605 51 1.48e-05 gcccccgcat ccacctcc acatccgcct chrII:4663371-4663451 25 1.48e-05 GCACAGTGAT CCACCTCC TTTTATACTT chrI:5722338-5722418 72 1.99e-05 GTCGTGGTCC CCTCGTCC C chrII:11765678-11765758 66 1.99e-05 GGGGGACGCC CCTCGTCC CCGATGT chrI:11061072-11061152 66 4.61e-05 ACTCGACGAT GCTCCACC CGACGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCTCCTCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:4432987-4433067 4.8e-06 63_[+5]_9 chrV:12576015-12576095 4.8e-06 65_[+5]_7 chrII:14087116-14087196 9.9e-06 1_[+5]_71 chrIV:2689058-2689138 9.9e-06 66_[+5]_6 chrIV:2127525-2127605 1.5e-05 50_[+5]_22 chrII:4663371-4663451 1.5e-05 24_[+5]_48 chrI:5722338-5722418 2e-05 71_[+5]_1 chrII:11765678-11765758 2e-05 65_[+5]_7 chrI:11061072-11061152 4.6e-05 65_[+5]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCTCCTCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCTCCTCC width=8 seqs=9 chrV:4432987-4433067 ( 64) CCTCCTCC 1 chrV:12576015-12576095 ( 66) CCTCCTCC 1 chrII:14087116-14087196 ( 2) GCTCCTCC 1 chrIV:2689058-2689138 ( 67) GCTCCTCC 1 chrIV:2127525-2127605 ( 51) CCACCTCC 1 chrII:4663371-4663451 ( 25) CCACCTCC 1 chrI:5722338-5722418 ( 72) CCTCGTCC 1 chrII:11765678-11765758 ( 66) CCTCGTCC 1 chrI:11061072-11061152 ( 66) GCTCCACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCTCCTCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.3898 E= 3.1e+004 -982 178 66 -982 -982 236 -982 -982 -44 -982 -982 140 -982 236 -982 -982 -982 200 8 -982 -144 -982 -982 160 -982 236 -982 -982 -982 236 -982 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCTCCTCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 3.1e+004 0.000000 0.666667 0.333333 0.000000 0.000000 1.000000 0.000000 0.000000 0.222222 0.000000 0.000000 0.777778 0.000000 1.000000 0.000000 0.000000 0.000000 0.777778 0.222222 0.000000 0.111111 0.000000 0.000000 0.888889 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCTCCTCC MEME-5 regular expression -------------------------------------------------------------------------------- [CG]C[TA]C[CG]TCC -------------------------------------------------------------------------------- Time 23.26 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:8250739-8250819 8.51e-01 80 chrII:6101634-6101714 7.54e-01 80 chrV:11156748-11156828 2.84e-01 80 chrIV:10437273-10437353 9.97e-01 80 chrIV:10429288-10429368 5.03e-01 80 chrIII:447019-447099 8.09e-01 80 chrV:8681168-8681248 9.98e-01 80 chrI:5341342-5341422 1.15e-03 5_[+3(1.64e-05)]_7_[+3(3.14e-05)]_\ 10_[+2(1.97e-05)]_4_[+3(9.97e-06)]_4_[+3(9.97e-06)]_10 chrV:14554644-14554724 7.63e-01 80 chrV:11204077-11204157 1.34e-01 80 chrII:340343-340423 1.78e-01 80 chrIV:3770929-3771009 8.78e-01 80 chrI:3651373-3651453 1.32e-02 28_[+3(9.97e-06)]_25_[+3(8.80e-05)]_\ 11 chrV:15294142-15294222 9.77e-01 80 chrX:12957080-12957160 9.47e-01 80 chrII:377259-377339 3.89e-01 80 chrX:16563465-16563545 9.34e-01 80 chrV:1933787-1933867 5.42e-01 80 chrV:8981118-8981198 5.21e-02 80 chrIV:3348509-3348589 6.96e-06 16_[+1(4.35e-06)]_[+1(9.06e-06)]_48 chrX:8332613-8332693 7.81e-01 80 chrV:1720055-1720135 7.40e-01 80 chrII:2903861-2903941 1.46e-03 22_[+1(3.77e-05)]_50 chrV:11590018-11590098 9.91e-01 80 chrX:8528761-8528841 6.29e-01 80 chrV:8921923-8922003 5.23e-01 80 chrII:5239486-5239566 7.22e-01 80 chrI:7297237-7297317 4.02e-01 80 chrIII:802190-802270 9.73e-01 80 chrX:11276352-11276432 5.06e-01 80 chrIII:7026037-7026117 7.42e-06 3_[+3(9.97e-06)]_1_[+3(3.14e-05)]_\ 37_[+3(9.97e-06)]_1_[+2(3.63e-06)]_6 chrII:13018370-13018450 9.35e-01 80 chrX:4816166-4816246 5.53e-02 80 chrI:10752695-10752775 1.94e-01 80 chrV:2037232-2037312 5.76e-01 80 chrI:12688523-12688603 3.28e-01 80 chrV:2050942-2051022 8.49e-05 15_[+3(9.97e-06)]_1_[+3(3.14e-05)]_\ 1_[+2(1.09e-05)]_22_[+3(6.82e-05)]_9 chrX:9831412-9831492 5.75e-01 80 chrIV:2689058-2689138 1.06e-02 6_[+5(9.89e-06)]_40_[+5(9.89e-06)]_\ 4_[+5(9.89e-06)]_6 chrII:11765678-11765758 1.63e-06 3_[+1(2.73e-05)]_5_[+2(1.45e-05)]_\ 11_[+1(2.73e-05)]_5_[+2(5.28e-05)]_9_[+5(1.99e-05)]_7 chrX:14344828-14344908 3.09e-01 80 chrX:6197943-6198023 8.88e-01 80 chrIII:9984754-9984834 1.83e-01 80 chrIV:3846759-3846839 8.23e-01 80 chrII:6579007-6579087 8.45e-01 80 chrIV:403216-403296 9.89e-01 80 chrX:13775609-13775689 2.53e-03 32_[+1(4.35e-06)]_[+1(4.35e-06)]_\ [+1(4.35e-06)]_24 chrX:12907074-12907154 1.71e-01 80 chrV:15384770-15384850 3.01e-01 80 chrX:1364582-1364662 4.36e-01 80 chrII:11513898-11513978 6.30e-01 80 chrIII:448646-448726 9.50e-01 80 chrIV:1522490-1522570 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chrV:7379551-7379631 1.00e+00 80 chrII:12260675-12260755 7.11e-01 80 chrX:1704930-1705010 3.25e-01 80 chrI:8244834-8244914 5.92e-01 80 chrIV:1521447-1521527 1.45e-01 80 chrII:5951701-5951781 2.44e-01 80 chrX:8337143-8337223 3.22e-01 80 chrX:12034862-12034942 1.01e-01 80 chrX:2464196-2464276 9.90e-01 80 chrII:9838752-9838832 9.55e-01 80 chrI:10167617-10167697 9.98e-01 80 chrII:6813979-6814059 9.99e-01 80 chrV:10465604-10465684 6.91e-01 80 chrV:1252744-1252824 2.59e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************