******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-79.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIV:4480531-4480611 1.0000 80 chrV:9689489-9689569 1.0000 80 chrIV:2891758-2891838 1.0000 80 chrIII:4152033-4152113 1.0000 80 chrIV:9563815-9563895 1.0000 80 chrIII:63964-64044 1.0000 80 chrV:18707094-18707174 1.0000 80 chrI:1154077-1154157 1.0000 80 chrI:13359782-13359862 1.0000 80 chrIII:12607524-12607604 1.0000 80 chrIII:9760220-9760300 1.0000 80 chrI:542198-542278 1.0000 80 chrIV:8188875-8188955 1.0000 80 chrIV:3032198-3032278 1.0000 80 chrIV:9322658-9322738 1.0000 80 chrIII:8898367-8898447 1.0000 80 chrIII:7495344-7495424 1.0000 80 chrV:10238217-10238297 1.0000 80 chrIV:2770966-2771046 1.0000 80 chrIII:2811487-2811567 1.0000 80 chrII:8568358-8568438 1.0000 80 chrIV:15473922-15474002 1.0000 80 chrIII:9442866-9442946 1.0000 80 chrIV:2765247-2765327 1.0000 80 chrIV:6793159-6793239 1.0000 80 chrI:12906007-12906087 1.0000 80 chrIV:15050264-15050344 1.0000 80 chrV:15186461-15186541 1.0000 80 chrIV:388025-388105 1.0000 80 chrX:17420948-17421028 1.0000 80 chrII:11742597-11742677 1.0000 80 chrV:6356-6436 1.0000 80 chrI:2755222-2755302 1.0000 80 chrII:5056787-5056867 1.0000 80 chrIII:11246642-11246722 1.0000 80 chrV:14688318-14688398 1.0000 80 chrIV:6524836-6524916 1.0000 80 chrII:11651133-11651213 1.0000 80 chrV:6453242-6453322 1.0000 80 chrI:4645411-4645491 1.0000 80 chrIII:7495144-7495224 1.0000 80 chrIII:795307-795387 1.0000 80 chrIV:4652712-4652792 1.0000 80 chrV:727675-727755 1.0000 80 chrV:16024506-16024586 1.0000 80 chrIII:1625839-1625919 1.0000 80 chrIII:4172411-4172491 1.0000 80 chrV:8415304-8415384 1.0000 80 chrV:4689433-4689513 1.0000 80 chrV:8223643-8223723 1.0000 80 chrIV:8890999-8891079 1.0000 80 chrV:6615372-6615452 1.0000 80 chrI:10776530-10776610 1.0000 80 chrI:2318173-2318253 1.0000 80 chrV:10343043-10343123 1.0000 80 chrI:5372397-5372477 1.0000 80 chrII:13289998-13290078 1.0000 80 chrIV:8226175-8226255 1.0000 80 chrIII:4015551-4015631 1.0000 80 chrII:8745336-8745416 1.0000 80 chrIV:11820652-11820732 1.0000 80 chrIV:13369370-13369450 1.0000 80 chrX:6334854-6334934 1.0000 80 chrIV:2608111-2608191 1.0000 80 chrIV:6325970-6326050 1.0000 80 chrII:9617429-9617509 1.0000 80 chrIII:5506403-5506483 1.0000 80 chrIII:4651863-4651943 1.0000 80 chrI:7019730-7019810 1.0000 80 chrIII:5009264-5009344 1.0000 80 chrI:8676567-8676647 1.0000 80 chrII:6252928-6253008 1.0000 80 chrI:541356-541436 1.0000 80 chrI:13942657-13942737 1.0000 80 chrV:4823729-4823809 1.0000 80 chrI:8815909-8815989 1.0000 80 chrIV:3296934-3297014 1.0000 80 chrV:4435655-4435735 1.0000 80 chrI:12861806-12861886 1.0000 80 chrIV:8377600-8377680 1.0000 80 chrI:14718919-14718999 1.0000 80 chrV:10021632-10021712 1.0000 80 chrIV:3799135-3799215 1.0000 80 chrX:16300625-16300705 1.0000 80 chrV:9340362-9340442 1.0000 80 chrI:13953358-13953438 1.0000 80 chrIII:11921803-11921883 1.0000 80 chrV:18575256-18575336 1.0000 80 chrIII:12906946-12907026 1.0000 80 chrIII:8362570-8362650 1.0000 80 chrV:1875690-1875770 1.0000 80 chrIV:11146182-11146262 1.0000 80 chrI:109680-109760 1.0000 80 chrV:5275807-5275887 1.0000 80 chrII:1322140-1322220 1.0000 80 chrI:2304285-2304365 1.0000 80 chrV:6335365-6335445 1.0000 80 chrI:2689163-2689243 1.0000 80 chrIII:9782216-9782296 1.0000 80 chrII:8020808-8020888 1.0000 80 chrV:5502894-5502974 1.0000 80 chrI:3909740-3909820 1.0000 80 chrIV:3336717-3336797 1.0000 80 chrIII:5230640-5230720 1.0000 80 chrIV:4468168-4468248 1.0000 80 chrX:9024431-9024511 1.0000 80 chrV:5284761-5284841 1.0000 80 chrII:2979848-2979928 1.0000 80 chrV:14354461-14354541 1.0000 80 chrIV:13398829-13398909 1.0000 80 chrX:12662872-12662952 1.0000 80 chrV:20848000-20848080 1.0000 80 chrX:17421169-17421249 1.0000 80 chrV:19610464-19610544 1.0000 80 chrIII:852419-852499 1.0000 80 chrII:4042612-4042692 1.0000 80 chrII:4891684-4891764 1.0000 80 chrII:4708877-4708957 1.0000 80 chrIV:10934006-10934086 1.0000 80 chrX:13470018-13470098 1.0000 80 chrIV:1711228-1711308 1.0000 80 chrII:8441674-8441754 1.0000 80 chrII:4042884-4042964 1.0000 80 chrI:10553016-10553096 1.0000 80 chrIII:12977649-12977729 1.0000 80 chrV:14412975-14413055 1.0000 80 chrIV:991347-991427 1.0000 80 chrII:11917848-11917928 1.0000 80 chrIII:11831184-11831264 1.0000 80 chrIV:16503731-16503811 1.0000 80 chrI:9271116-9271196 1.0000 80 chrV:6425974-6426054 1.0000 80 chrV:4186524-4186604 1.0000 80 chrV:13654023-13654103 1.0000 80 chrV:14412169-14412249 1.0000 80 chrII:11774387-11774467 1.0000 80 chrI:9787833-9787913 1.0000 80 chrV:14319135-14319215 1.0000 80 chrIV:2658836-2658916 1.0000 80 chrIV:14072190-14072270 1.0000 80 chrIII:8443748-8443828 1.0000 80 chrIV:7962139-7962219 1.0000 80 chrI:8022907-8022987 1.0000 80 chrII:5353818-5353898 1.0000 80 chrV:123717-123797 1.0000 80 chrX:5713660-5713740 1.0000 80 chrII:12058403-12058483 1.0000 80 chrII:9934006-9934086 1.0000 80 chrX:1452775-1452855 1.0000 80 chrIII:8354837-8354917 1.0000 80 chrIII:1420031-1420111 1.0000 80 chrI:7656568-7656648 1.0000 80 chrV:20267030-20267110 1.0000 80 chrX:6867871-6867951 1.0000 80 chrII:15273078-15273158 1.0000 80 chrII:1323214-1323294 1.0000 80 chrII:10657704-10657784 1.0000 80 chrV:6278476-6278556 1.0000 80 chrI:7868999-7869079 1.0000 80 chrI:1157657-1157737 1.0000 80 chrI:10187492-10187572 1.0000 80 chrII:6346560-6346640 1.0000 80 chrIII:2425014-2425094 1.0000 80 chrIII:3869554-3869634 1.0000 80 chrI:2878528-2878608 1.0000 80 chrIV:5946762-5946842 1.0000 80 chrIII:13464663-13464743 1.0000 80 chrIV:5541464-5541544 1.0000 80 chrV:13986788-13986868 1.0000 80 chrIII:1616694-1616774 1.0000 80 chrIII:3902877-3902957 1.0000 80 chrIV:15900214-15900294 1.0000 80 chrII:15226276-15226356 1.0000 80 chrIV:11528083-11528163 1.0000 80 chrX:8151633-8151713 1.0000 80 chrIV:6526610-6526690 1.0000 80 chrV:15000403-15000483 1.0000 80 chrII:12726819-12726899 1.0000 80 chrII:2921044-2921124 1.0000 80 chrIII:6373879-6373959 1.0000 80 chrIII:11463937-11464017 1.0000 80 chrIII:6969914-6969994 1.0000 80 chrI:6847123-6847203 1.0000 80 chrIII:12499479-12499559 1.0000 80 chrIV:6326173-6326253 1.0000 80 chrII:2860392-2860472 1.0000 80 chrI:8530155-8530235 1.0000 80 chrIV:2678215-2678295 1.0000 80 chrIII:931517-931597 1.0000 80 chrIII:5853314-5853394 1.0000 80 chrIII:8449621-8449701 1.0000 80 chrV:5667462-5667542 1.0000 80 chrI:12964305-12964385 1.0000 80 chrII:3567689-3567769 1.0000 80 chrV:6559750-6559830 1.0000 80 chrI:6094518-6094598 1.0000 80 chrIII:89355-89435 1.0000 80 chrV:9318289-9318369 1.0000 80 chrIII:9748937-9749017 1.0000 80 chrI:378890-378970 1.0000 80 chrIV:866906-866986 1.0000 80 chrI:6164215-6164295 1.0000 80 chrII:11376607-11376687 1.0000 80 chrI:12654739-12654819 1.0000 80 chrV:8936236-8936316 1.0000 80 chrIII:699027-699107 1.0000 80 chrIV:17281357-17281437 1.0000 80 chrV:11541348-11541428 1.0000 80 chrII:14155829-14155909 1.0000 80 chrIII:7977456-7977536 1.0000 80 chrII:8747542-8747622 1.0000 80 chrI:13547396-13547476 1.0000 80 chrIII:4491404-4491484 1.0000 80 chrIV:2664270-2664350 1.0000 80 chrV:775044-775124 1.0000 80 chrI:7872462-7872542 1.0000 80 chrIII:10711485-10711565 1.0000 80 chrIV:14889084-14889164 1.0000 80 chrIV:6481114-6481194 1.0000 80 chrIV:7083407-7083487 1.0000 80 chrIII:11091219-11091299 1.0000 80 chrV:20497696-20497776 1.0000 80 chrX:5106506-5106586 1.0000 80 chrIII:10817188-10817268 1.0000 80 chrIII:7278661-7278741 1.0000 80 chrX:12348044-12348124 1.0000 80 chrIII:1951590-1951670 1.0000 80 chrII:3439387-3439467 1.0000 80 chrIII:5305888-5305968 1.0000 80 chrV:4823940-4824020 1.0000 80 chrIV:7984088-7984168 1.0000 80 chrIV:10366169-10366249 1.0000 80 chrV:1875897-1875977 1.0000 80 chrIV:16399243-16399323 1.0000 80 chrV:1158307-1158387 1.0000 80 chrV:16592310-16592390 1.0000 80 chrIII:9630003-9630083 1.0000 80 chrI:852152-852232 1.0000 80 chrI:13652802-13652882 1.0000 80 chrIII:6360985-6361065 1.0000 80 chrI:7015824-7015904 1.0000 80 chrIII:7338787-7338867 1.0000 80 chrX:15297688-15297768 1.0000 80 chrIII:835882-835962 1.0000 80 chrV:10526029-10526109 1.0000 80 chrI:8867657-8867737 1.0000 80 chrIV:2665751-2665831 1.0000 80 chrI:13576096-13576176 1.0000 80 chrIV:7789758-7789838 1.0000 80 chrX:10821225-10821305 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ceh-79/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-79.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.286 C 0.218 G 0.219 T 0.277 Background letter frequencies (from file dataset with add-one prior applied): A 0.286 C 0.218 G 0.219 T 0.277 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF BCWTTTTT MEME-1 width = 8 sites = 44 llr = 342 E-value = 3.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif BCWTTTTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2:4::::: pos.-specific C 3a:::::2 probability G 3::::::2 matrix T 2:6aaaa6 bits 2.2 * 2.0 * 1.8 * **** 1.5 * **** Relative 1.3 * **** Entropy 1.1 * **** (11.2 bits) 0.9 ****** 0.7 ******* 0.4 ******* 0.2 ******* 0.0 -------- Multilevel GCTTTTTT consensus C A G sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCWTTTTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:17281357-17281437 29 2.16e-05 AAGGATGGCA GCTTTTTT TCAGAATCGG chrV:5667462-5667542 73 2.16e-05 GACCATGATG GCTTTTTT chrIII:12499479-12499559 70 2.16e-05 AAAAAACGTT GCTTTTTT CCA chrII:5353818-5353898 66 2.16e-05 GACCACGGAG GCTTTTTT AATTTAT chrV:8415304-8415384 41 2.16e-05 agattctcga gctttttt aaagacgcac chrIV:6524836-6524916 58 2.16e-05 ACGCAAACAT GCTTTTTT AGGAAAAAAA chrIII:6360985-6361065 28 4.30e-05 ATTTTTCACC CCTTTTTT CTCGCCCTTC chrV:123717-123797 14 4.30e-05 ATTGAGTGTA CCTTTTTT GCCAACAAAG chrV:14412169-14412249 44 4.30e-05 TCGGCGAACT CCTTTTTT GAATTAGGAG chrV:8223643-8223723 30 4.30e-05 AAGGCTGCCG CCTTTTTT GGCACTGTTT chrI:542198-542278 13 4.30e-05 AAATTTTGAG CCTTTTTT GTTGTTTTAG chrI:7015824-7015904 16 6.53e-05 ATTCAAACTT GCATTTTT AGTCAGAATA chrV:20497696-20497776 27 6.53e-05 aaaaaatccc gcattttt tgtagatcaa chrIII:3902877-3902957 54 9.26e-05 TATTCTCTCT TCTTTTTT TCATTTTCAA chrX:16300625-16300705 41 9.26e-05 AGATCACCTG TCTTTTTT GGTTATTGAA chrI:2755222-2755302 38 9.26e-05 CGGATTCGTA TCTTTTTT GAAGAGAGAG chrIV:15473922-15474002 49 9.26e-05 CCTGGAAATG TCTTTTTT TCGGCTAAAA chrI:7019730-7019810 63 1.15e-04 AGCGTGACGC CCATTTTT CTGGGTCTTT chrII:13289998-13290078 20 1.15e-04 GCTGCATTCT CCATTTTT AGACCAGCGG chrI:13359782-13359862 44 1.15e-04 TGCCGCAATG CCATTTTT CTAAAATCCG chrIII:89355-89435 60 1.77e-04 ACTGCAGCGA ACTTTTTT GTCGAAGAGT chrIV:991347-991427 62 1.77e-04 CAATCAGGCA GCTTTTTC AAACGGTCAA chrIV:6325970-6326050 55 1.77e-04 TTGTTATGGT GCTTTTTC CTTTGTTCAG chrIII:1625839-1625919 53 1.77e-04 CTCTGCAGCA GCTTtttc tcacgaacat chrIII:12607524-12607604 66 1.77e-04 CTTTTTAAAT GCTTTTTC TCGAGAT chrV:15000403-15000483 59 2.22e-04 AGTCCTTGTC CCTTTTTG CAGTGAGCGA chrII:8441674-8441754 34 2.22e-04 GCAAGGCTTT TCATTTTT TGGGTATACT chrII:2979848-2979928 29 2.22e-04 TGTTATTTTG TCATTTTT ATTGGATGTT chrI:8676567-8676647 57 2.22e-04 TTTGTTAAAA TCATTTTT ATAAATTTGA chrII:5056787-5056867 16 2.22e-04 ACATTTGGCT TCATTTTT AGCACAAGTT chrIV:6326173-6326253 43 2.39e-04 AAAGCTTCTC CCTTTTTC TCCTTCGTTT chrII:6252928-6253008 28 2.57e-04 GTGGGGGTTG GCATTTTG AAGAGAGCTC chrIII:7495144-7495224 22 2.57e-04 GTAAATCGTC GCATTTTG TTACTTTCAT chrV:1158307-1158387 32 3.25e-04 GGAAAGGTTC ACATTTTT TTGCCGGAAA chrV:4823940-4824020 39 3.25e-04 GTACTTCATA TCTTTTTG AAAAAAACCA chrII:2860392-2860472 34 3.25e-04 TCTCTTCAGT TCTTTTTG TAGCTATTTT chrV:4186524-4186604 14 3.25e-04 TTTTCTCGTG GCATTTTC CAAGAGAGGC chrV:4823729-4823809 55 3.25e-04 TTCTCCAGAA ACATTTTT GGCGAAAAAA chrI:4645411-4645491 15 3.81e-04 ATTAGAATAC CCATTTTC AATTCACAAC chrIII:2811487-2811567 1 3.81e-04 . CCATTTTC TTCGTTTTCC chrIV:2664270-2664350 31 4.03e-04 AGGGTTCGAA ACTTTTTG GGGCAAATCT chrV:6278476-6278556 56 4.03e-04 caaacctttg actttttg ccatagtgca chrII:4042612-4042692 65 4.03e-04 ctgtaatttc actttttg gaatttct chrII:11917848-11917928 58 4.93e-04 TGAAAAAAAA ACATTTTG AATACGATTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCWTTTTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:17281357-17281437 2.2e-05 28_[+1]_44 chrV:5667462-5667542 2.2e-05 72_[+1] chrIII:12499479-12499559 2.2e-05 69_[+1]_3 chrII:5353818-5353898 2.2e-05 65_[+1]_7 chrV:8415304-8415384 2.2e-05 40_[+1]_32 chrIV:6524836-6524916 2.2e-05 57_[+1]_15 chrIII:6360985-6361065 4.3e-05 27_[+1]_45 chrV:123717-123797 4.3e-05 13_[+1]_59 chrV:14412169-14412249 4.3e-05 43_[+1]_29 chrV:8223643-8223723 4.3e-05 29_[+1]_43 chrI:542198-542278 4.3e-05 12_[+1]_60 chrI:7015824-7015904 6.5e-05 15_[+1]_57 chrV:20497696-20497776 6.5e-05 26_[+1]_46 chrIII:3902877-3902957 9.3e-05 53_[+1]_19 chrX:16300625-16300705 9.3e-05 40_[+1]_32 chrI:2755222-2755302 9.3e-05 37_[+1]_35 chrIV:15473922-15474002 9.3e-05 48_[+1]_24 chrI:7019730-7019810 0.00011 62_[+1]_10 chrII:13289998-13290078 0.00011 19_[+1]_53 chrI:13359782-13359862 0.00011 43_[+1]_29 chrIII:89355-89435 0.00018 59_[+1]_13 chrIV:991347-991427 0.00018 61_[+1]_11 chrIV:6325970-6326050 0.00018 54_[+1]_18 chrIII:1625839-1625919 0.00018 52_[+1]_20 chrIII:12607524-12607604 0.00018 65_[+1]_7 chrV:15000403-15000483 0.00022 58_[+1]_14 chrII:8441674-8441754 0.00022 33_[+1]_39 chrII:2979848-2979928 0.00022 28_[+1]_44 chrI:8676567-8676647 0.00022 56_[+1]_16 chrII:5056787-5056867 0.00022 15_[+1]_57 chrIV:6326173-6326253 0.00024 42_[+1]_30 chrII:6252928-6253008 0.00026 27_[+1]_45 chrIII:7495144-7495224 0.00026 21_[+1]_51 chrV:1158307-1158387 0.00032 31_[+1]_41 chrV:4823940-4824020 0.00032 38_[+1]_34 chrII:2860392-2860472 0.00032 33_[+1]_39 chrV:4186524-4186604 0.00032 13_[+1]_59 chrV:4823729-4823809 0.00032 54_[+1]_18 chrI:4645411-4645491 0.00038 14_[+1]_58 chrIII:2811487-2811567 0.00038 [+1]_72 chrIV:2664270-2664350 0.0004 30_[+1]_42 chrV:6278476-6278556 0.0004 55_[+1]_17 chrII:4042612-4042692 0.0004 64_[+1]_8 chrII:11917848-11917928 0.00049 57_[+1]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCWTTTTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BCWTTTTT width=8 seqs=44 chrIV:17281357-17281437 ( 29) GCTTTTTT 1 chrV:5667462-5667542 ( 73) GCTTTTTT 1 chrIII:12499479-12499559 ( 70) GCTTTTTT 1 chrII:5353818-5353898 ( 66) GCTTTTTT 1 chrV:8415304-8415384 ( 41) GCTTTTTT 1 chrIV:6524836-6524916 ( 58) GCTTTTTT 1 chrIII:6360985-6361065 ( 28) CCTTTTTT 1 chrV:123717-123797 ( 14) CCTTTTTT 1 chrV:14412169-14412249 ( 44) CCTTTTTT 1 chrV:8223643-8223723 ( 30) CCTTTTTT 1 chrI:542198-542278 ( 13) CCTTTTTT 1 chrI:7015824-7015904 ( 16) GCATTTTT 1 chrV:20497696-20497776 ( 27) GCATTTTT 1 chrIII:3902877-3902957 ( 54) TCTTTTTT 1 chrX:16300625-16300705 ( 41) TCTTTTTT 1 chrI:2755222-2755302 ( 38) TCTTTTTT 1 chrIV:15473922-15474002 ( 49) TCTTTTTT 1 chrI:7019730-7019810 ( 63) CCATTTTT 1 chrII:13289998-13290078 ( 20) CCATTTTT 1 chrI:13359782-13359862 ( 44) CCATTTTT 1 chrIII:89355-89435 ( 60) ACTTTTTT 1 chrIV:991347-991427 ( 62) GCTTTTTC 1 chrIV:6325970-6326050 ( 55) GCTTTTTC 1 chrIII:1625839-1625919 ( 53) GCTTTTTC 1 chrIII:12607524-12607604 ( 66) GCTTTTTC 1 chrV:15000403-15000483 ( 59) CCTTTTTG 1 chrII:8441674-8441754 ( 34) TCATTTTT 1 chrII:2979848-2979928 ( 29) TCATTTTT 1 chrI:8676567-8676647 ( 57) TCATTTTT 1 chrII:5056787-5056867 ( 16) TCATTTTT 1 chrIV:6326173-6326253 ( 43) CCTTTTTC 1 chrII:6252928-6253008 ( 28) GCATTTTG 1 chrIII:7495144-7495224 ( 22) GCATTTTG 1 chrV:1158307-1158387 ( 32) ACATTTTT 1 chrV:4823940-4824020 ( 39) TCTTTTTG 1 chrII:2860392-2860472 ( 34) TCTTTTTG 1 chrV:4186524-4186604 ( 14) GCATTTTC 1 chrV:4823729-4823809 ( 55) ACATTTTT 1 chrI:4645411-4645491 ( 15) CCATTTTC 1 chrIII:2811487-2811567 ( 1) CCATTTTC 1 chrIV:2664270-2664350 ( 31) ACTTTTTG 1 chrV:6278476-6278556 ( 56) ACTTTTTG 1 chrII:4042612-4042692 ( 65) ACTTTTTG 1 chrII:11917848-11917928 ( 58) ACATTTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCWTTTTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.72094 E= 3.1e-001 -84 33 64 -29 -1210 220 -1210 -1210 44 -1210 -1210 115 -1210 -1210 -1210 185 -1210 -1210 -1210 185 -1210 -1210 -1210 185 -1210 -1210 -1210 185 -1210 -26 -10 115 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCWTTTTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 3.1e-001 0.159091 0.272727 0.340909 0.227273 0.000000 1.000000 0.000000 0.000000 0.386364 0.000000 0.000000 0.613636 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.181818 0.204545 0.613636 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BCWTTTTT MEME-1 regular expression -------------------------------------------------------------------------------- [GCT]C[TA]TTTT[TG] -------------------------------------------------------------------------------- Time 5.89 secs. ******************************************************************************** ******************************************************************************** MOTIF GGAGCCCC MEME-2 width = 8 sites = 4 llr = 48 E-value = 1.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAGCCCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::a::::: pos.-specific C ::::aaaa probability G aa:a:::: matrix T :::::::: bits 2.2 ** ***** 2.0 ** ***** 1.8 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGAGCCCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGCCCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:11541348-11541428 70 6.78e-06 CAACGGCTAT GGAGCCCC TAT chrIV:13398829-13398909 39 6.78e-06 GCTGTTATTT GGAGCCCC GCACGTGGTG chrX:6334854-6334934 47 6.78e-06 CGGTGGACCA GGAGCCCC AGGATTAGGC chrIV:9563815-9563895 51 6.78e-06 AGGTGCACCA GGAGCCCC AGGACACCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGCCCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:11541348-11541428 6.8e-06 69_[+2]_3 chrIV:13398829-13398909 6.8e-06 38_[+2]_34 chrX:6334854-6334934 6.8e-06 46_[+2]_26 chrIV:9563815-9563895 6.8e-06 50_[+2]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGCCCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAGCCCC width=8 seqs=4 chrV:11541348-11541428 ( 70) GGAGCCCC 1 chrIV:13398829-13398909 ( 39) GGAGCCCC 1 chrX:6334854-6334934 ( 47) GGAGCCCC 1 chrIV:9563815-9563895 ( 51) GGAGCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGCCCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.1553 E= 1.0e+004 -865 -865 219 -865 -865 -865 219 -865 181 -865 -865 -865 -865 -865 219 -865 -865 220 -865 -865 -865 220 -865 -865 -865 220 -865 -865 -865 220 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGCCCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.0e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGCCCC MEME-2 regular expression -------------------------------------------------------------------------------- GGAGCCCC -------------------------------------------------------------------------------- Time 9.81 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCCGCGG MEME-3 width = 8 sites = 3 llr = 37 E-value = 2.7e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCCGCGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:aa:a:: probability G :a::a:aa matrix T :::::::: bits 2.2 ******** 2.0 ******** 1.8 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.6 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGCCGCGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCGCGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:5305888-5305968 8 5.20e-06 CTTCTCT CGCCGCGG CGCCCTTATA chrIV:14889084-14889164 51 5.20e-06 TCCAGAGGGG CGCCGCGG TGGGAAAATA chrV:5502894-5502974 29 5.20e-06 GAGCCGTCAC CGCCGCGG TTACCCGCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCGCGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:5305888-5305968 5.2e-06 7_[+3]_65 chrIV:14889084-14889164 5.2e-06 50_[+3]_22 chrV:5502894-5502974 5.2e-06 28_[+3]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCGCGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCCGCGG width=8 seqs=3 chrIII:5305888-5305968 ( 8) CGCCGCGG 1 chrIV:14889084-14889164 ( 51) CGCCGCGG 1 chrV:5502894-5502974 ( 29) CGCCGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCGCGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.2293 E= 2.7e+004 -823 220 -823 -823 -823 -823 218 -823 -823 220 -823 -823 -823 220 -823 -823 -823 -823 218 -823 -823 220 -823 -823 -823 -823 218 -823 -823 -823 218 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCGCGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 2.7e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCGCGG MEME-3 regular expression -------------------------------------------------------------------------------- CGCCGCGG -------------------------------------------------------------------------------- Time 13.83 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGTTCGA MEME-4 width = 8 sites = 6 llr = 66 E-value = 5.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGTTCGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C :::2:a:: probability G aaa:::a: matrix T :::8a::: bits 2.2 *** ** 2.0 *** ** 1.8 *** **** 1.5 *** **** Relative 1.3 ******** Entropy 1.1 ******** (15.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGTTCGA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTCGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:852152-852232 22 1.10e-05 AGGGAGTCGC GGGTTCGA ACCAGTGAGG chrIV:2664270-2664350 22 1.10e-05 AGGAGGTCAA GGGTTCGA AACTTTTTGG chrII:2860392-2860472 9 1.10e-05 GGGGGCGT GGGTTCGA ATCCCACTCT chrX:5713660-5713740 42 1.10e-05 TTAAGGTCAG GGGTTCGA GTCCCCTAGG chrI:541356-541436 7 1.10e-05 GGCAAT GGGTTCGA AGTCTGGACC chrII:3439387-3439467 18 1.97e-05 GCCCAATGCG GGGCTCGA ACCCGCGACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTCGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:852152-852232 1.1e-05 21_[+4]_51 chrIV:2664270-2664350 1.1e-05 21_[+4]_51 chrII:2860392-2860472 1.1e-05 8_[+4]_64 chrX:5713660-5713740 1.1e-05 41_[+4]_31 chrI:541356-541436 1.1e-05 6_[+4]_66 chrII:3439387-3439467 2e-05 17_[+4]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTCGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGTTCGA width=8 seqs=6 chrI:852152-852232 ( 22) GGGTTCGA 1 chrIV:2664270-2664350 ( 22) GGGTTCGA 1 chrII:2860392-2860472 ( 9) GGGTTCGA 1 chrX:5713660-5713740 ( 42) GGGTTCGA 1 chrI:541356-541436 ( 7) GGGTTCGA 1 chrII:3439387-3439467 ( 18) GGGCTCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTCGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.229 E= 5.0e+004 -923 -923 219 -923 -923 -923 219 -923 -923 -923 219 -923 -923 -38 -923 159 -923 -923 -923 185 -923 220 -923 -923 -923 -923 219 -923 181 -923 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTCGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 5.0e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.166667 0.000000 0.833333 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGTTCGA MEME-4 regular expression -------------------------------------------------------------------------------- GGGTTCGA -------------------------------------------------------------------------------- Time 17.70 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTTCTCS MEME-5 width = 8 sites = 6 llr = 64 E-value = 7.7e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTTCTCS MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a::a:a7 probability G :::::::3 matrix T a:aa:a:: bits 2.2 * * * 2.0 * * * 1.8 ******* 1.5 ******* Relative 1.3 ******** Entropy 1.1 ******** (15.3 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTTCTCC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTCTCS MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:6360985-6361065 44 1.33e-05 TTCTCGCCCT TCTTCTCC ACTTCCCGAC chrI:13547396-13547476 47 1.33e-05 TTCTCCAATT TCTTCTCC TTCTAGAGAG chrII:8568358-8568438 60 1.33e-05 TGGAGCTCCA TCTTCTCC ACATTGTCCT chrIII:9760220-9760300 40 1.33e-05 AGTGCAAGTC TCTTCTCC AAAAATGCTA chrV:8936236-8936316 45 2.67e-05 CCATCATATT TCTTCTCG AAGACTCCCG chrIV:388025-388105 70 2.67e-05 ACAAAAAATG TCTTCTCG ATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTCTCS MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:6360985-6361065 1.3e-05 43_[+5]_29 chrI:13547396-13547476 1.3e-05 46_[+5]_26 chrII:8568358-8568438 1.3e-05 59_[+5]_13 chrIII:9760220-9760300 1.3e-05 39_[+5]_33 chrV:8936236-8936316 2.7e-05 44_[+5]_28 chrIV:388025-388105 2.7e-05 69_[+5]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTCTCS MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTTCTCS width=8 seqs=6 chrIII:6360985-6361065 ( 44) TCTTCTCC 1 chrI:13547396-13547476 ( 47) TCTTCTCC 1 chrII:8568358-8568438 ( 60) TCTTCTCC 1 chrIII:9760220-9760300 ( 40) TCTTCTCC 1 chrV:8936236-8936316 ( 45) TCTTCTCG 1 chrIV:388025-388105 ( 70) TCTTCTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTCTCS MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.0178 E= 7.7e+004 -923 -923 -923 185 -923 220 -923 -923 -923 -923 -923 185 -923 -923 -923 185 -923 220 -923 -923 -923 -923 -923 185 -923 220 -923 -923 -923 161 60 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTCTCS MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 7.7e+004 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.666667 0.333333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTTCTCS MEME-5 regular expression -------------------------------------------------------------------------------- TCTTCTC[CG] -------------------------------------------------------------------------------- Time 21.55 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:4480531-4480611 2.61e-01 80 chrV:9689489-9689569 8.23e-01 80 chrIV:2891758-2891838 1.67e-02 80 chrIII:4152033-4152113 2.35e-01 80 chrIV:9563815-9563895 3.50e-02 50_[+2(6.78e-06)]_22 chrIII:63964-64044 4.84e-01 80 chrV:18707094-18707174 3.09e-01 80 chrI:1154077-1154157 1.29e-01 80 chrI:13359782-13359862 2.37e-01 80 chrIII:12607524-12607604 9.69e-02 80 chrIII:9760220-9760300 1.90e-02 39_[+5(1.33e-05)]_33 chrI:542198-542278 1.76e-01 12_[+1(4.30e-05)]_60 chrIV:8188875-8188955 4.72e-01 80 chrIV:3032198-3032278 7.37e-01 80 chrIV:9322658-9322738 9.59e-01 80 chrIII:8898367-8898447 2.23e-01 80 chrIII:7495344-7495424 7.18e-01 80 chrV:10238217-10238297 9.97e-01 80 chrIV:2770966-2771046 5.22e-01 80 chrIII:2811487-2811567 1.38e-01 80 chrII:8568358-8568438 2.31e-03 59_[+5(1.33e-05)]_13 chrIV:15473922-15474002 2.62e-01 48_[+1(9.26e-05)]_24 chrIII:9442866-9442946 4.36e-01 34_[+4(9.59e-05)]_38 chrIV:2765247-2765327 3.76e-01 80 chrIV:6793159-6793239 4.25e-01 80 chrI:12906007-12906087 6.45e-01 80 chrIV:15050264-15050344 9.81e-01 80 chrV:15186461-15186541 8.72e-01 80 chrIV:388025-388105 1.75e-01 69_[+5(2.67e-05)]_3 chrX:17420948-17421028 9.00e-01 80 chrII:11742597-11742677 2.92e-01 80 chrV:6356-6436 5.53e-01 80 chrI:2755222-2755302 3.58e-02 37_[+1(9.26e-05)]_35 chrII:5056787-5056867 3.06e-01 80 chrIII:11246642-11246722 8.60e-01 80 chrV:14688318-14688398 6.78e-01 80 chrIV:6524836-6524916 1.90e-01 57_[+1(2.16e-05)]_15 chrII:11651133-11651213 5.40e-01 80 chrV:6453242-6453322 2.86e-01 80 chrI:4645411-4645491 5.49e-01 80 chrIII:7495144-7495224 4.01e-01 80 chrIII:795307-795387 8.47e-01 80 chrIV:4652712-4652792 1.19e-01 45_[+5(6.10e-05)]_27 chrV:727675-727755 6.87e-01 80 chrV:16024506-16024586 3.64e-01 80 chrIII:1625839-1625919 2.60e-02 80 chrIII:4172411-4172491 8.72e-01 80 chrV:8415304-8415384 1.10e-01 40_[+1(2.16e-05)]_32 chrV:4689433-4689513 8.25e-01 80 chrV:8223643-8223723 1.47e-01 29_[+1(4.30e-05)]_43 chrIV:8890999-8891079 9.65e-01 80 chrV:6615372-6615452 5.63e-01 80 chrI:10776530-10776610 3.35e-01 80 chrI:2318173-2318253 2.24e-01 80 chrV:10343043-10343123 9.77e-01 80 chrI:5372397-5372477 9.59e-01 80 chrII:13289998-13290078 1.07e-01 80 chrIV:8226175-8226255 3.62e-01 80 chrIII:4015551-4015631 5.02e-01 80 chrII:8745336-8745416 7.24e-01 80 chrIV:11820652-11820732 8.01e-01 80 chrIV:13369370-13369450 9.10e-01 80 chrX:6334854-6334934 8.28e-03 46_[+2(6.78e-06)]_26 chrIV:2608111-2608191 9.66e-01 80 chrIV:6325970-6326050 8.83e-02 80 chrII:9617429-9617509 7.95e-01 80 chrIII:5506403-5506483 9.96e-01 80 chrIII:4651863-4651943 3.28e-01 80 chrI:7019730-7019810 4.31e-02 80 chrIII:5009264-5009344 1.00e+00 80 chrI:8676567-8676647 7.49e-02 80 chrII:6252928-6253008 2.49e-01 80 chrI:541356-541436 4.64e-02 6_[+4(1.10e-05)]_66 chrI:13942657-13942737 8.97e-01 80 chrV:4823729-4823809 2.25e-01 80 chrI:8815909-8815989 3.27e-01 80 chrIV:3296934-3297014 5.41e-01 80 chrV:4435655-4435735 6.35e-01 80 chrI:12861806-12861886 8.50e-01 80 chrIV:8377600-8377680 8.17e-01 80 chrI:14718919-14718999 6.27e-01 80 chrV:10021632-10021712 7.20e-01 80 chrIV:3799135-3799215 7.64e-01 80 chrX:16300625-16300705 3.28e-02 40_[+1(9.26e-05)]_32 chrV:9340362-9340442 1.39e-01 80 chrI:13953358-13953438 3.79e-01 80 chrIII:11921803-11921883 8.18e-01 80 chrV:18575256-18575336 7.58e-01 80 chrIII:12906946-12907026 4.92e-02 80 chrIII:8362570-8362650 9.51e-01 80 chrV:1875690-1875770 2.23e-01 80 chrIV:11146182-11146262 1.02e-01 30_[+5(6.10e-05)]_42 chrI:109680-109760 5.81e-01 80 chrV:5275807-5275887 5.68e-01 80 chrII:1322140-1322220 3.33e-01 80 chrI:2304285-2304365 1.36e-01 80 chrV:6335365-6335445 3.18e-01 80 chrI:2689163-2689243 9.79e-01 80 chrIII:9782216-9782296 5.23e-03 80 chrII:8020808-8020888 9.84e-01 80 chrV:5502894-5502974 1.61e-02 28_[+3(5.20e-06)]_44 chrI:3909740-3909820 6.51e-01 80 chrIV:3336717-3336797 7.43e-01 80 chrIII:5230640-5230720 2.70e-01 80 chrIV:4468168-4468248 2.50e-01 80 chrX:9024431-9024511 7.60e-01 80 chrV:5284761-5284841 9.83e-01 80 chrII:2979848-2979928 4.64e-01 80 chrV:14354461-14354541 8.81e-01 80 chrIV:13398829-13398909 3.22e-02 38_[+2(6.78e-06)]_34 chrX:12662872-12662952 2.29e-01 80 chrV:20848000-20848080 6.22e-01 80 chrX:17421169-17421249 6.29e-01 80 chrV:19610464-19610544 6.73e-01 80 chrIII:852419-852499 9.99e-01 80 chrII:4042612-4042692 5.68e-01 80 chrII:4891684-4891764 7.47e-01 80 chrII:4708877-4708957 4.15e-01 80 chrIV:10934006-10934086 2.66e-01 80 chrX:13470018-13470098 9.71e-01 80 chrIV:1711228-1711308 8.39e-02 80 chrII:8441674-8441754 4.48e-01 80 chrII:4042884-4042964 3.74e-01 80 chrI:10553016-10553096 9.99e-01 80 chrIII:12977649-12977729 1.82e-01 80 chrV:14412975-14413055 1.00e+00 80 chrIV:991347-991427 2.01e-01 80 chrII:11917848-11917928 4.61e-01 80 chrIII:11831184-11831264 5.67e-01 80 chrIV:16503731-16503811 8.31e-01 80 chrI:9271116-9271196 9.88e-01 80 chrV:6425974-6426054 7.64e-01 80 chrV:4186524-4186604 5.84e-02 80 chrV:13654023-13654103 9.38e-01 80 chrV:14412169-14412249 5.90e-02 43_[+1(4.30e-05)]_29 chrII:11774387-11774467 1.93e-01 80 chrI:9787833-9787913 6.30e-01 80 chrV:14319135-14319215 3.14e-02 68_[+5(6.10e-05)]_4 chrIV:2658836-2658916 3.99e-01 80 chrIV:14072190-14072270 3.82e-01 80 chrIII:8443748-8443828 9.06e-01 80 chrIV:7962139-7962219 9.85e-01 80 chrI:8022907-8022987 8.17e-01 80 chrII:5353818-5353898 1.02e-02 65_[+1(2.16e-05)]_7 chrV:123717-123797 1.91e-01 13_[+1(4.30e-05)]_59 chrX:5713660-5713740 8.94e-03 41_[+4(1.10e-05)]_31 chrII:12058403-12058483 9.59e-01 80 chrII:9934006-9934086 8.33e-01 80 chrX:1452775-1452855 5.49e-01 80 chrIII:8354837-8354917 6.00e-01 80 chrIII:1420031-1420111 8.87e-01 80 chrI:7656568-7656648 6.28e-01 80 chrV:20267030-20267110 9.38e-02 80 chrX:6867871-6867951 3.60e-01 80 chrII:15273078-15273158 2.02e-01 80 chrII:1323214-1323294 1.24e-01 80 chrII:10657704-10657784 1.51e-01 80 chrV:6278476-6278556 4.10e-01 80 chrI:7868999-7869079 9.97e-01 80 chrI:1157657-1157737 4.10e-01 80 chrI:10187492-10187572 8.07e-01 80 chrII:6346560-6346640 8.17e-01 80 chrIII:2425014-2425094 8.41e-01 80 chrIII:3869554-3869634 9.99e-01 80 chrI:2878528-2878608 5.96e-01 80 chrIV:5946762-5946842 2.41e-02 80 chrIII:13464663-13464743 8.97e-01 80 chrIV:5541464-5541544 5.32e-01 80 chrV:13986788-13986868 7.56e-01 80 chrIII:1616694-1616774 6.48e-01 80 chrIII:3902877-3902957 1.20e-01 53_[+1(9.26e-05)]_19 chrIV:15900214-15900294 3.71e-01 80 chrII:15226276-15226356 1.94e-01 80 chrIV:11528083-11528163 4.88e-01 80 chrX:8151633-8151713 7.41e-01 80 chrIV:6526610-6526690 8.77e-01 80 chrV:15000403-15000483 1.19e-01 80 chrII:12726819-12726899 3.00e-01 80 chrII:2921044-2921124 1.88e-01 80 chrIII:6373879-6373959 8.37e-01 80 chrIII:11463937-11464017 2.88e-01 80 chrIII:6969914-6969994 9.21e-01 80 chrI:6847123-6847203 3.91e-02 80 chrIII:12499479-12499559 9.04e-02 69_[+1(2.16e-05)]_3 chrIV:6326173-6326253 6.97e-02 80 chrII:2860392-2860472 5.13e-03 8_[+4(1.10e-05)]_64 chrI:8530155-8530235 6.86e-01 80 chrIV:2678215-2678295 6.28e-01 80 chrIII:931517-931597 8.91e-01 80 chrIII:5853314-5853394 8.36e-01 80 chrIII:8449621-8449701 9.16e-01 80 chrV:5667462-5667542 3.29e-03 72_[+1(2.16e-05)] chrI:12964305-12964385 2.78e-01 80 chrII:3567689-3567769 8.69e-01 80 chrV:6559750-6559830 1.97e-02 68_[+2(2.37e-05)]_4 chrI:6094518-6094598 2.90e-01 80 chrIII:89355-89435 3.20e-01 80 chrV:9318289-9318369 8.47e-01 80 chrIII:9748937-9749017 5.93e-01 80 chrI:378890-378970 8.71e-01 80 chrIV:866906-866986 9.41e-01 80 chrI:6164215-6164295 2.59e-01 80 chrII:11376607-11376687 9.12e-01 80 chrI:12654739-12654819 5.91e-01 80 chrV:8936236-8936316 7.22e-02 44_[+5(2.67e-05)]_28 chrIII:699027-699107 9.37e-01 80 chrIV:17281357-17281437 1.18e-01 28_[+1(2.16e-05)]_44 chrV:11541348-11541428 3.69e-02 69_[+2(6.78e-06)]_3 chrII:14155829-14155909 5.20e-01 80 chrIII:7977456-7977536 5.81e-01 80 chrII:8747542-8747622 6.60e-01 80 chrI:13547396-13547476 9.21e-04 46_[+5(1.33e-05)]_26 chrIII:4491404-4491484 9.99e-01 80 chrIV:2664270-2664350 1.25e-02 21_[+4(1.10e-05)]_51 chrV:775044-775124 8.71e-01 80 chrI:7872462-7872542 5.45e-01 80 chrIII:10711485-10711565 1.05e-01 80 chrIV:14889084-14889164 9.87e-03 50_[+3(5.20e-06)]_22 chrIV:6481114-6481194 8.31e-01 80 chrIV:7083407-7083487 3.94e-01 80 chrIII:11091219-11091299 1.59e-01 80 chrV:20497696-20497776 3.07e-01 26_[+1(6.53e-05)]_46 chrX:5106506-5106586 3.84e-01 80 chrIII:10817188-10817268 4.61e-02 80 chrIII:7278661-7278741 9.76e-01 80 chrX:12348044-12348124 8.80e-01 80 chrIII:1951590-1951670 2.95e-01 80 chrII:3439387-3439467 9.83e-02 17_[+4(1.97e-05)]_55 chrIII:5305888-5305968 3.98e-03 7_[+3(5.20e-06)]_65 chrV:4823940-4824020 3.87e-01 80 chrIV:7984088-7984168 6.24e-01 80 chrIV:10366169-10366249 9.92e-01 80 chrV:1875897-1875977 1.94e-01 80 chrIV:16399243-16399323 7.60e-01 80 chrV:1158307-1158387 4.54e-01 80 chrV:16592310-16592390 8.29e-01 80 chrIII:9630003-9630083 7.79e-01 80 chrI:852152-852232 1.48e-02 21_[+4(1.10e-05)]_51 chrI:13652802-13652882 6.88e-01 80 chrIII:6360985-6361065 4.42e-03 27_[+1(4.30e-05)]_8_[+5(1.33e-05)]_\ 29 chrI:7015824-7015904 1.02e-01 15_[+1(6.53e-05)]_57 chrIII:7338787-7338867 3.52e-01 80 chrX:15297688-15297768 9.14e-01 80 chrIII:835882-835962 7.23e-01 80 chrV:10526029-10526109 2.02e-01 80 chrI:8867657-8867737 8.82e-01 80 chrIV:2665751-2665831 5.04e-01 80 chrI:13576096-13576176 6.87e-01 80 chrIV:7789758-7789838 9.36e-01 80 chrX:10821225-10821305 8.56e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n12.farnam.hpc.yale.internal ********************************************************************************