******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-63.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:3673743-3673823 1.0000 80 chrV:11971896-11971976 1.0000 80 chrX:3677078-3677158 1.0000 80 chrII:5124417-5124497 1.0000 80 chrIV:10655044-10655124 1.0000 80 chrV:1126448-1126528 1.0000 80 chrX:3046271-3046351 1.0000 80 chrI:7330317-7330397 1.0000 80 chrIV:10598296-10598376 1.0000 80 chrX:5772682-5772762 1.0000 80 chrII:5662759-5662839 1.0000 80 chrIV:4490302-4490382 1.0000 80 chrX:3686576-3686656 1.0000 80 chrIII:8648149-8648229 1.0000 80 chrV:12312530-12312610 1.0000 80 chrI:8120759-8120839 1.0000 80 chrIII:9219596-9219676 1.0000 80 chrII:2716307-2716387 1.0000 80 chrII:8555692-8555772 1.0000 80 chrI:7360579-7360659 1.0000 80 chrV:7112370-7112450 1.0000 80 chrII:10677401-10677481 1.0000 80 chrX:9653657-9653737 1.0000 80 chrV:18717518-18717598 1.0000 80 chrI:7025937-7026017 1.0000 80 chrI:7042179-7042259 1.0000 80 chrV:11696059-11696139 1.0000 80 chrX:688751-688831 1.0000 80 chrX:4897264-4897344 1.0000 80 chrX:9577265-9577345 1.0000 80 chrV:114797-114877 1.0000 80 chrV:5746380-5746460 1.0000 80 chrIII:9768631-9768711 1.0000 80 chrX:13615338-13615418 1.0000 80 chrX:9996204-9996284 1.0000 80 chrII:8303378-8303458 1.0000 80 chrX:7002089-7002169 1.0000 80 chrX:6687933-6688013 1.0000 80 chrIII:11921156-11921236 1.0000 80 chrIV:15520712-15520792 1.0000 80 chrX:15605354-15605434 1.0000 80 chrX:8776685-8776765 1.0000 80 chrX:6131396-6131476 1.0000 80 chrI:1574374-1574454 1.0000 80 chrIV:10520057-10520137 1.0000 80 chrX:12511250-12511330 1.0000 80 chrX:13323673-13323753 1.0000 80 chrII:10978517-10978597 1.0000 80 chrV:11210810-11210890 1.0000 80 chrII:13933678-13933758 1.0000 80 chrIII:6351588-6351668 1.0000 80 chrIII:723572-723652 1.0000 80 chrIII:12082136-12082216 1.0000 80 chrIII:4952223-4952303 1.0000 80 chrII:14940597-14940677 1.0000 80 chrX:3385878-3385958 1.0000 80 chrII:14390900-14390980 1.0000 80 chrIV:1875794-1875874 1.0000 80 chrX:10300955-10301035 1.0000 80 chrII:10298287-10298367 1.0000 80 chrX:7534579-7534659 1.0000 80 chrV:8916399-8916479 1.0000 80 chrV:14391725-14391805 1.0000 80 chrV:11696875-11696955 1.0000 80 chrI:14497851-14497931 1.0000 80 chrI:7031456-7031536 1.0000 80 chrIII:13461491-13461571 1.0000 80 chrX:15651180-15651260 1.0000 80 chrIV:17279163-17279243 1.0000 80 chrIII:13638377-13638457 1.0000 80 chrIV:1475150-1475230 1.0000 80 chrV:3616246-3616326 1.0000 80 chrI:4055462-4055542 1.0000 80 chrIII:12370933-12371013 1.0000 80 chrII:5337605-5337685 1.0000 80 chrIII:12687573-12687653 1.0000 80 chrII:6995710-6995790 1.0000 80 chrII:11749143-11749223 1.0000 80 chrX:3671951-3672031 1.0000 80 chrII:5821855-5821935 1.0000 80 chrIV:2656679-2656759 1.0000 80 chrII:7920307-7920387 1.0000 80 chrI:9166133-9166213 1.0000 80 chrX:13506205-13506285 1.0000 80 chrIV:12360090-12360170 1.0000 80 chrX:12210801-12210881 1.0000 80 chrV:9895958-9896038 1.0000 80 chrX:2050407-2050487 1.0000 80 chrIII:11286875-11286955 1.0000 80 chrIV:5803756-5803836 1.0000 80 chrX:9989781-9989861 1.0000 80 chrV:7894203-7894283 1.0000 80 chrX:14799722-14799802 1.0000 80 chrI:788164-788244 1.0000 80 chrII:14469131-14469211 1.0000 80 chrX:3678829-3678909 1.0000 80 chrI:7363935-7364015 1.0000 80 chrV:10393928-10394008 1.0000 80 chrIV:14071493-14071573 1.0000 80 chrX:9322068-9322148 1.0000 80 chrX:4146290-4146370 1.0000 80 chrX:6702265-6702345 1.0000 80 chrX:15668812-15668892 1.0000 80 chrV:6099459-6099539 1.0000 80 chrII:14037548-14037628 1.0000 80 chrI:9792184-9792264 1.0000 80 chrV:6225044-6225124 1.0000 80 chrV:5050255-5050335 1.0000 80 chrII:5389292-5389372 1.0000 80 chrV:14686575-14686655 1.0000 80 chrIII:3560434-3560514 1.0000 80 chrV:4732690-4732770 1.0000 80 chrV:12024547-12024627 1.0000 80 chrV:1418015-1418095 1.0000 80 chrIV:15040216-15040296 1.0000 80 chrI:6283644-6283724 1.0000 80 chrIII:345564-345644 1.0000 80 chrIII:12728335-12728415 1.0000 80 chrX:3694359-3694439 1.0000 80 chrIV:12843119-12843199 1.0000 80 chrX:5774360-5774440 1.0000 80 chrII:14561189-14561269 1.0000 80 chrIV:1056102-1056182 1.0000 80 chrI:13421164-13421244 1.0000 80 chrIV:12114726-12114806 1.0000 80 chrIII:12663857-12663937 1.0000 80 chrIII:9623664-9623744 1.0000 80 chrX:12419465-12419545 1.0000 80 chrX:15264590-15264670 1.0000 80 chrV:1575348-1575428 1.0000 80 chrIII:6879429-6879509 1.0000 80 chrI:4218590-4218670 1.0000 80 chrV:18724973-18725053 1.0000 80 chrIII:13061000-13061080 1.0000 80 chrIII:13626284-13626364 1.0000 80 chrIII:884252-884332 1.0000 80 chrIII:5225798-5225878 1.0000 80 chrIV:3337829-3337909 1.0000 80 chrI:10040336-10040416 1.0000 80 chrV:18722993-18723073 1.0000 80 chrIII:5044972-5045052 1.0000 80 chrI:6288694-6288774 1.0000 80 chrI:467058-467138 1.0000 80 chrIV:16415774-16415854 1.0000 80 chrII:6141105-6141185 1.0000 80 chrI:13422803-13422883 1.0000 80 chrX:910493-910573 1.0000 80 chrIII:13621992-13622072 1.0000 80 chrII:5782986-5783066 1.0000 80 chrIII:11358426-11358506 1.0000 80 chrI:9665435-9665515 1.0000 80 chrX:13696305-13696385 1.0000 80 chrI:2072015-2072095 1.0000 80 chrX:9426481-9426561 1.0000 80 chrIII:7335990-7336070 1.0000 80 chrV:5981933-5982013 1.0000 80 chrIII:668393-668473 1.0000 80 chrIII:11091801-11091881 1.0000 80 chrIII:6990976-6991056 1.0000 80 chrI:5589114-5589194 1.0000 80 chrX:15633815-15633895 1.0000 80 chrV:11533781-11533861 1.0000 80 chrIII:13426656-13426736 1.0000 80 chrIII:3476384-3476464 1.0000 80 chrV:11638811-11638891 1.0000 80 chrV:15083619-15083699 1.0000 80 chrII:13369773-13369853 1.0000 80 chrII:5950812-5950892 1.0000 80 chrV:4961498-4961578 1.0000 80 chrV:7105426-7105506 1.0000 80 chrV:6461560-6461640 1.0000 80 chrV:5917863-5917943 1.0000 80 chrV:10178335-10178415 1.0000 80 chrIII:12558211-12558291 1.0000 80 chrX:967817-967897 1.0000 80 chrI:7083245-7083325 1.0000 80 chrV:727484-727564 1.0000 80 chrII:11637044-11637124 1.0000 80 chrIII:10856953-10857033 1.0000 80 chrI:11138503-11138583 1.0000 80 chrI:12920892-12920972 1.0000 80 chrX:13154734-13154814 1.0000 80 chrIII:5755253-5755333 1.0000 80 chrI:3987238-3987318 1.0000 80 chrI:2710591-2710671 1.0000 80 chrI:11518025-11518105 1.0000 80 chrIV:2990658-2990738 1.0000 80 chrI:7518408-7518488 1.0000 80 chrI:7084132-7084212 1.0000 80 chrX:15535439-15535519 1.0000 80 chrV:9155-9235 1.0000 80 chrIII:3139217-3139297 1.0000 80 chrI:2668374-2668454 1.0000 80 chrIII:5758939-5759019 1.0000 80 chrX:7300648-7300728 1.0000 80 chrV:2638695-2638775 1.0000 80 chrII:5836462-5836542 1.0000 80 chrX:2464173-2464253 1.0000 80 chrIII:5068963-5069043 1.0000 80 chrV:11641658-11641738 1.0000 80 chrX:3115410-3115490 1.0000 80 chrIII:2033047-2033127 1.0000 80 chrX:5724686-5724766 1.0000 80 chrIV:7575578-7575658 1.0000 80 chrII:6347900-6347980 1.0000 80 chrX:15127103-15127183 1.0000 80 chrIV:1691745-1691825 1.0000 80 chrIV:761949-762029 1.0000 80 chrV:13715484-13715564 1.0000 80 chrIII:10270928-10271008 1.0000 80 chrV:6226921-6227001 1.0000 80 chrIV:8008016-8008096 1.0000 80 chrIII:10460715-10460795 1.0000 80 chrX:17544524-17544604 1.0000 80 chrIII:13187905-13187985 1.0000 80 chrV:18709912-18709992 1.0000 80 chrIV:10511957-10512037 1.0000 80 chrIII:13474669-13474749 1.0000 80 chrI:470966-471046 1.0000 80 chrX:2972547-2972627 1.0000 80 chrIII:6551835-6551915 1.0000 80 chrX:11643882-11643962 1.0000 80 chrIII:11317269-11317349 1.0000 80 chrV:2127187-2127267 1.0000 80 chrIII:5940967-5941047 1.0000 80 chrIII:6135583-6135663 1.0000 80 chrX:2598552-2598632 1.0000 80 chrV:13468314-13468394 1.0000 80 chrIII:11946491-11946571 1.0000 80 chrV:11039665-11039745 1.0000 80 chrIV:11871900-11871980 1.0000 80 chrI:3829770-3829850 1.0000 80 chrII:6913464-6913544 1.0000 80 chrV:5284756-5284836 1.0000 80 chrV:13313153-13313233 1.0000 80 chrI:7772597-7772677 1.0000 80 chrIV:9074378-9074458 1.0000 80 chrV:14055194-14055274 1.0000 80 chrV:12870084-12870164 1.0000 80 chrX:13358790-13358870 1.0000 80 chrV:12510282-12510362 1.0000 80 chrX:11241716-11241796 1.0000 80 chrII:12211961-12212041 1.0000 80 chrI:461707-461787 1.0000 80 chrIII:9052001-9052081 1.0000 80 chrI:1823109-1823189 1.0000 80 chrIII:13275973-13276053 1.0000 80 chrIII:11119447-11119527 1.0000 80 chrV:12465537-12465617 1.0000 80 chrX:601499-601579 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ceh-63/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-63.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.284 C 0.214 G 0.216 T 0.286 Background letter frequencies (from file dataset with add-one prior applied): A 0.284 C 0.214 G 0.216 T 0.286 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GAARAAAA MEME-1 width = 8 sites = 68 llr = 484 E-value = 2.7e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAARAAAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :976a77a pos.-specific C 212::::: probability G 8:14:33: matrix T :::::::: bits 2.2 2.0 1.8 * * 1.6 * * * Relative 1.3 ** * * Entropy 1.1 ** ***** (10.3 bits) 0.9 ** ***** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAAAAAAA consensus C CG GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAARAAAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:6551835-6551915 19 3.22e-05 AAAAAAAGAC GAAAAAAA GGAGTTCGGC chrIII:13474669-13474749 49 3.22e-05 GAAATTCATG GAAAAAAA GGCGGAGCCT chrIII:3560434-3560514 27 3.22e-05 ACAAAAAGTT GAAAAAAA GAGCATGATG chrX:15651180-15651260 8 3.22e-05 CGAGAAA GAAAAAAA ACCAACCCAA chrV:18717518-18717598 40 3.22e-05 GTTGTCATCT GAAAAAAA AAGAATTTAG chrIV:10598296-10598376 72 3.22e-05 TCAGAAAATT GAAAAAAA A chrI:4218590-4218670 48 5.67e-05 CGTTAAAGAA GAAGAAAA CGACGTCTTC chrII:8303378-8303458 37 5.67e-05 AACAGCTTTC GAAGAAAA ACGATTAACG chrX:688751-688831 6 5.67e-05 CTTCT GAAGAAAA AGAAGTATTC chrX:2972547-2972627 1 1.06e-04 . GAAAAGAA AAGTGGGAAC chrI:11138503-11138583 73 1.06e-04 GAAGCACACG GAAAAGAA chrX:967817-967897 9 1.06e-04 CACAGAGA GAAAAGAA AAGTGAGACG chrV:7105426-7105506 11 1.06e-04 ACGAATGAGG GAAAAAGA AAGGTGATTA chrX:910493-910573 65 1.06e-04 cgaagatgag gaaaaaga agaagaag chrV:11210810-11210890 35 1.06e-04 GCGACAGCTA GAAAAAGA AAAAAGGCAG chrIII:8648149-8648229 19 1.06e-04 GCTAATTTTT GAAAAAGA AGCAGGAACT chrV:12870084-12870164 40 1.43e-04 CGGCGGGATG GAAGAGAA AACGCGCGCA chrI:11518025-11518105 58 1.43e-04 AACGGAACTT GAAGAAGA ATTGGCTGCT chrIII:13426656-13426736 46 1.43e-04 CAGCTGCCAA GAAGAAGA TTCTGGCTGA chrV:12024547-12024627 38 1.43e-04 CCCCGGAACA GAAGAGAA AAGGAGACGA chrX:9989781-9989861 34 1.43e-04 GAATTCCTTG GAAGAAGA ATCTCCATTT chrX:13506205-13506285 19 1.43e-04 GTGGGAAGAA GAAGAAGA AGCACATCTG chrIV:10520057-10520137 18 1.43e-04 ATTGATGGTT GAAGAGAA CCGTTTTTAT chrIII:11091801-11091881 26 1.67e-04 ACTGAAAAAT GACAAAAA TTAGGGTATT chrI:6288694-6288774 72 1.67e-04 TCTGCTCGCT GACAAAAA A chrX:12210801-12210881 48 1.67e-04 TTTTTTCTGT GACAAAAA AGTTTAATCA chrII:11749143-11749223 38 1.67e-04 AAAGTTCTCA GACAAAAA TAGGCCAATT chrX:8776685-8776765 24 1.67e-04 GCGCGTGTCT GACAAAAA AGACATTGCC chrX:15264590-15264670 63 2.04e-04 GTGAGTGCAA GAAAAGGA AATAATTTTC chrIV:12114726-12114806 34 2.04e-04 TTTGGAAAGA GAAAAGGA TGAAAGGAGC chrI:9166133-9166213 14 2.04e-04 AGTTCTTTCC GACGAAAA CATGCGCGGA chrII:7920307-7920387 5 2.04e-04 GCAT GACGAAAA CTGGCTTTTT chrV:11533781-11533861 70 2.50e-04 ATGATAGGTA CAAAAAAA TAT chrIII:12663857-12663937 71 2.50e-04 TTTTTTTGGG CAAAAAAA AT chrX:5774360-5774440 38 2.50e-04 TGCATTTTCA CAAAAAAA CATTCAGGTA chrV:4732690-4732770 73 2.50e-04 TGGAGAAGAC GAAGAGGA chrV:11696875-11696955 25 2.50e-04 GATATAAGAT CAAAAAAA TGTTGGAAGA chrIII:9768631-9768711 67 2.50e-04 ACACAAACTA CAAAAAAA TGTTCA chrIII:5225798-5225878 24 2.87e-04 CCAGGCTCTT GACAAGAA GTTCTCTGGA chrIII:12728335-12728415 46 3.39e-04 GAGTTATCAC GACGAGAA CTCCGGTCGC chrIII:6135583-6135663 53 4.12e-04 CTGCACACGG CAAAAAGA TGAACCTAAT chrIV:1691745-1691825 18 4.12e-04 GAATCGTGCC GCAAAAAA GATTAAATTC chrI:7084132-7084212 30 4.12e-04 GACGAAATAC GCAAAAAA TCAGAGAAAA chrI:7518408-7518488 44 4.12e-04 GAGAGCTTCG CAAAAAGA AATCGTGTGC chrII:6141105-6141185 22 4.12e-04 GAGAAGATGG CAAAAAGA GGCAGTAAAA chrV:1126448-1126528 28 4.12e-04 CGACGAAAGT GCAAAAAA CCTTTGTAAA chrII:5836462-5836542 25 4.51e-04 AACGATTTGT GAGAAAAA TTAGTTGTCT chrX:3678829-3678909 70 4.51e-04 GAACACGGAG GACAAGGA CGT chrIV:1475150-1475230 1 4.51e-04 . GAGAAAAA TGACGCGGAA chrV:11696059-11696139 15 4.51e-04 TCTACGTAAG GAGAAAAA GTCGTAAAAT chrI:8120759-8120839 68 4.51e-04 GAAGAGGCGA GAGAAAAA GTGTC chrIII:11317269-11317349 57 5.06e-04 TGTTAAATGT GCAGAAAA AATTGATTTT chrIV:2990658-2990738 27 5.06e-04 GAGGCGCCGC CAAGAGAA CGCAACGGGC chrII:13369773-13369853 40 5.06e-04 CGAAAAAGTG CAAGAAGA GCTCTCCAAG chrII:5662759-5662839 58 5.06e-04 CTCCCTCAAT CAAGAGAA CCAAAACGGC chrX:3046271-3046351 17 5.06e-04 TCAATTCAAT CAAGAGAA GTGGAAGTGG chrIV:10655044-10655124 66 5.06e-04 GTTAGTGGAG CAAGAGAA GAGAGCA chrIII:10270928-10271008 49 5.59e-04 AATCGACAGG GACGAGGA GAATTCTAGG chrV:5917863-5917943 30 5.59e-04 CGGTCGTGTG GACGAGGA AGCAAATGAG chrV:14391725-14391805 54 5.59e-04 TTCTCTGGGA CACAAAAA GGGTAATAAC chrIII:11921156-11921236 19 5.59e-04 TAACATTTTC GACGAGGA GGGAGCCGCT chrI:2668374-2668454 7 6.33e-04 GCGAGG GCAAAAGA TCAGTGTTTT chrIII:11286875-11286955 6 6.33e-04 TTTTC CACGAAAA CAAAATTGAT chrX:13615338-13615418 64 6.33e-04 GGGAGTACGA GCAAAAGA TGACTCTTC chrV:1418015-1418095 58 6.70e-04 TTGTGACCCC GAGAAGAA TTACAAAATG chrV:3616246-3616326 11 7.12e-04 TTCCCAACAA GCAGAGAA CACGCATTCC chrI:2072015-2072095 41 8.51e-04 ACAGCAAGAA GCCGAAAA AGCGAGATAC chrX:2050407-2050487 13 8.65e-04 TAGTTATCGA GAGAAGGA AGCGAGGCTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAARAAAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:6551835-6551915 3.2e-05 18_[+1]_54 chrIII:13474669-13474749 3.2e-05 48_[+1]_24 chrIII:3560434-3560514 3.2e-05 26_[+1]_46 chrX:15651180-15651260 3.2e-05 7_[+1]_65 chrV:18717518-18717598 3.2e-05 39_[+1]_33 chrIV:10598296-10598376 3.2e-05 71_[+1]_1 chrI:4218590-4218670 5.7e-05 47_[+1]_25 chrII:8303378-8303458 5.7e-05 36_[+1]_36 chrX:688751-688831 5.7e-05 5_[+1]_67 chrX:2972547-2972627 0.00011 [+1]_72 chrI:11138503-11138583 0.00011 72_[+1] chrX:967817-967897 0.00011 8_[+1]_64 chrV:7105426-7105506 0.00011 10_[+1]_62 chrX:910493-910573 0.00011 64_[+1]_8 chrV:11210810-11210890 0.00011 34_[+1]_38 chrIII:8648149-8648229 0.00011 18_[+1]_54 chrV:12870084-12870164 0.00014 39_[+1]_33 chrI:11518025-11518105 0.00014 57_[+1]_15 chrIII:13426656-13426736 0.00014 45_[+1]_27 chrV:12024547-12024627 0.00014 37_[+1]_35 chrX:9989781-9989861 0.00014 33_[+1]_39 chrX:13506205-13506285 0.00014 18_[+1]_54 chrIV:10520057-10520137 0.00014 17_[+1]_55 chrIII:11091801-11091881 0.00017 25_[+1]_47 chrI:6288694-6288774 0.00017 71_[+1]_1 chrX:12210801-12210881 0.00017 47_[+1]_25 chrII:11749143-11749223 0.00017 37_[+1]_35 chrX:8776685-8776765 0.00017 23_[+1]_49 chrX:15264590-15264670 0.0002 62_[+1]_10 chrIV:12114726-12114806 0.0002 33_[+1]_39 chrI:9166133-9166213 0.0002 13_[+1]_59 chrII:7920307-7920387 0.0002 4_[+1]_68 chrV:11533781-11533861 0.00025 69_[+1]_3 chrIII:12663857-12663937 0.00025 70_[+1]_2 chrX:5774360-5774440 0.00025 37_[+1]_35 chrV:4732690-4732770 0.00025 72_[+1] chrV:11696875-11696955 0.00025 24_[+1]_48 chrIII:9768631-9768711 0.00025 66_[+1]_6 chrIII:5225798-5225878 0.00029 23_[+1]_49 chrIII:12728335-12728415 0.00034 45_[+1]_27 chrIII:6135583-6135663 0.00041 52_[+1]_20 chrIV:1691745-1691825 0.00041 17_[+1]_55 chrI:7084132-7084212 0.00041 29_[+1]_43 chrI:7518408-7518488 0.00041 43_[+1]_29 chrII:6141105-6141185 0.00041 21_[+1]_51 chrV:1126448-1126528 0.00041 27_[+1]_45 chrII:5836462-5836542 0.00045 24_[+1]_48 chrX:3678829-3678909 0.00045 69_[+1]_3 chrIV:1475150-1475230 0.00045 [+1]_72 chrV:11696059-11696139 0.00045 14_[+1]_58 chrI:8120759-8120839 0.00045 67_[+1]_5 chrIII:11317269-11317349 0.00051 56_[+1]_16 chrIV:2990658-2990738 0.00051 26_[+1]_46 chrII:13369773-13369853 0.00051 39_[+1]_33 chrII:5662759-5662839 0.00051 57_[+1]_15 chrX:3046271-3046351 0.00051 16_[+1]_56 chrIV:10655044-10655124 0.00051 65_[+1]_7 chrIII:10270928-10271008 0.00056 48_[+1]_24 chrV:5917863-5917943 0.00056 29_[+1]_43 chrV:14391725-14391805 0.00056 53_[+1]_19 chrIII:11921156-11921236 0.00056 18_[+1]_54 chrI:2668374-2668454 0.00063 6_[+1]_66 chrIII:11286875-11286955 0.00063 5_[+1]_67 chrX:13615338-13615418 0.00063 63_[+1]_9 chrV:1418015-1418095 0.00067 57_[+1]_15 chrV:3616246-3616326 0.00071 10_[+1]_62 chrI:2072015-2072095 0.00085 40_[+1]_32 chrX:2050407-2050487 0.00087 12_[+1]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAARAAAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAARAAAA width=8 seqs=68 chrIII:6551835-6551915 ( 19) GAAAAAAA 1 chrIII:13474669-13474749 ( 49) GAAAAAAA 1 chrIII:3560434-3560514 ( 27) GAAAAAAA 1 chrX:15651180-15651260 ( 8) GAAAAAAA 1 chrV:18717518-18717598 ( 40) GAAAAAAA 1 chrIV:10598296-10598376 ( 72) GAAAAAAA 1 chrI:4218590-4218670 ( 48) GAAGAAAA 1 chrII:8303378-8303458 ( 37) GAAGAAAA 1 chrX:688751-688831 ( 6) GAAGAAAA 1 chrX:2972547-2972627 ( 1) GAAAAGAA 1 chrI:11138503-11138583 ( 73) GAAAAGAA 1 chrX:967817-967897 ( 9) GAAAAGAA 1 chrV:7105426-7105506 ( 11) GAAAAAGA 1 chrX:910493-910573 ( 65) GAAAAAGA 1 chrV:11210810-11210890 ( 35) GAAAAAGA 1 chrIII:8648149-8648229 ( 19) GAAAAAGA 1 chrV:12870084-12870164 ( 40) GAAGAGAA 1 chrI:11518025-11518105 ( 58) GAAGAAGA 1 chrIII:13426656-13426736 ( 46) GAAGAAGA 1 chrV:12024547-12024627 ( 38) GAAGAGAA 1 chrX:9989781-9989861 ( 34) GAAGAAGA 1 chrX:13506205-13506285 ( 19) GAAGAAGA 1 chrIV:10520057-10520137 ( 18) GAAGAGAA 1 chrIII:11091801-11091881 ( 26) GACAAAAA 1 chrI:6288694-6288774 ( 72) GACAAAAA 1 chrX:12210801-12210881 ( 48) GACAAAAA 1 chrII:11749143-11749223 ( 38) GACAAAAA 1 chrX:8776685-8776765 ( 24) GACAAAAA 1 chrX:15264590-15264670 ( 63) GAAAAGGA 1 chrIV:12114726-12114806 ( 34) GAAAAGGA 1 chrI:9166133-9166213 ( 14) GACGAAAA 1 chrII:7920307-7920387 ( 5) GACGAAAA 1 chrV:11533781-11533861 ( 70) CAAAAAAA 1 chrIII:12663857-12663937 ( 71) CAAAAAAA 1 chrX:5774360-5774440 ( 38) CAAAAAAA 1 chrV:4732690-4732770 ( 73) GAAGAGGA 1 chrV:11696875-11696955 ( 25) CAAAAAAA 1 chrIII:9768631-9768711 ( 67) CAAAAAAA 1 chrIII:5225798-5225878 ( 24) GACAAGAA 1 chrIII:12728335-12728415 ( 46) GACGAGAA 1 chrIII:6135583-6135663 ( 53) CAAAAAGA 1 chrIV:1691745-1691825 ( 18) GCAAAAAA 1 chrI:7084132-7084212 ( 30) GCAAAAAA 1 chrI:7518408-7518488 ( 44) CAAAAAGA 1 chrII:6141105-6141185 ( 22) CAAAAAGA 1 chrV:1126448-1126528 ( 28) GCAAAAAA 1 chrII:5836462-5836542 ( 25) GAGAAAAA 1 chrX:3678829-3678909 ( 70) GACAAGGA 1 chrIV:1475150-1475230 ( 1) GAGAAAAA 1 chrV:11696059-11696139 ( 15) GAGAAAAA 1 chrI:8120759-8120839 ( 68) GAGAAAAA 1 chrIII:11317269-11317349 ( 57) GCAGAAAA 1 chrIV:2990658-2990738 ( 27) CAAGAGAA 1 chrII:13369773-13369853 ( 40) CAAGAAGA 1 chrII:5662759-5662839 ( 58) CAAGAGAA 1 chrX:3046271-3046351 ( 17) CAAGAGAA 1 chrIV:10655044-10655124 ( 66) CAAGAGAA 1 chrIII:10270928-10271008 ( 49) GACGAGGA 1 chrV:5917863-5917943 ( 30) GACGAGGA 1 chrV:14391725-14391805 ( 54) CACAAAAA 1 chrIII:11921156-11921236 ( 19) GACGAGGA 1 chrI:2668374-2668454 ( 7) GCAAAAGA 1 chrIII:11286875-11286955 ( 6) CACGAAAA 1 chrX:13615338-13615418 ( 64) GCAAAAGA 1 chrV:1418015-1418095 ( 58) GAGAAGAA 1 chrV:3616246-3616326 ( 11) GCAGAGAA 1 chrI:2072015-2072095 ( 41) GCCGAAAA 1 chrX:2050407-2050487 ( 13) GAGAAGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAARAAAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.43105 E= 2.7e-001 -1273 5 185 -1273 163 -86 -1273 -1273 125 14 -129 -1273 112 -1273 82 -1273 182 -1273 -1273 -1273 125 -1273 58 -1273 125 -1273 58 -1273 182 -1273 -1273 -1273 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAARAAAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 68 E= 2.7e-001 0.000000 0.220588 0.779412 0.000000 0.882353 0.117647 0.000000 0.000000 0.676471 0.235294 0.088235 0.000000 0.617647 0.000000 0.382353 0.000000 1.000000 0.000000 0.000000 0.000000 0.676471 0.000000 0.323529 0.000000 0.676471 0.000000 0.323529 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAARAAAA MEME-1 regular expression -------------------------------------------------------------------------------- [GC]A[AC][AG]A[AG][AG]A -------------------------------------------------------------------------------- Time 7.55 secs. ******************************************************************************** ******************************************************************************** MOTIF CACCACMM MEME-2 width = 8 sites = 14 llr = 135 E-value = 1.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACCACMM MEME-2 Description -------------------------------------------------------------------------------- Simplified A :8::a:45 pos.-specific C a2aa:a65 probability G :::::::: matrix T :::::::: bits 2.2 * ** * 2.0 * ** * 1.8 * **** 1.6 * **** Relative 1.3 * **** Entropy 1.1 ******** (14.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACCACCA consensus C AC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCACMM MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:13187905-13187985 59 7.75e-06 GTTTCTAGGT CACCACCC GTGTACTACA chrII:14469131-14469211 71 7.75e-06 CTCCTCCTAC CACCACCC TT chrV:12312530-12312610 20 7.75e-06 AGAACCACGC CACCACCC GCTCTTTAAC chrI:4218590-4218670 25 1.80e-05 AAGAGCCCCA CACCACCA GAACCCGTTA chrIII:12728335-12728415 64 1.80e-05 CTCCGGTCGC CACCACCA TGGTGCAAC chrV:9895958-9896038 44 1.80e-05 TCATTTTTAT CACCACCA CAAAACACAA chrII:5337605-5337685 39 1.80e-05 CGATCATACA CACCACCA CATCAGTCAG chrIII:12558211-12558291 46 2.83e-05 TGGTGCTGAC CACCACAC GGGTCACTCA chrI:470966-471046 9 4.20e-05 tacggatt caccacaa tgggtctccc chrX:9426481-9426561 69 4.20e-05 TGGGTAGCTC CACCACAA ATGT chrII:5821855-5821935 44 4.20e-05 CGTGCATATC CACCACAA CCAGGTCGTG chrX:2598552-2598632 66 4.78e-05 CTATCAGTGT CCCCACCC ATAAATT chrV:9155-9235 69 6.33e-05 AGCGCcacgc ccccacac acac chrIII:5755253-5755333 42 6.33e-05 CCGTTGACTC CCCCACAC CGCTCACTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCACMM MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:13187905-13187985 7.7e-06 58_[+2]_14 chrII:14469131-14469211 7.7e-06 70_[+2]_2 chrV:12312530-12312610 7.7e-06 19_[+2]_53 chrI:4218590-4218670 1.8e-05 24_[+2]_48 chrIII:12728335-12728415 1.8e-05 63_[+2]_9 chrV:9895958-9896038 1.8e-05 43_[+2]_29 chrII:5337605-5337685 1.8e-05 38_[+2]_34 chrIII:12558211-12558291 2.8e-05 45_[+2]_27 chrI:470966-471046 4.2e-05 8_[+2]_64 chrX:9426481-9426561 4.2e-05 68_[+2]_4 chrII:5821855-5821935 4.2e-05 43_[+2]_29 chrX:2598552-2598632 4.8e-05 65_[+2]_7 chrV:9155-9235 6.3e-05 68_[+2]_4 chrIII:5755253-5755333 6.3e-05 41_[+2]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCACMM MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACCACMM width=8 seqs=14 chrIII:13187905-13187985 ( 59) CACCACCC 1 chrII:14469131-14469211 ( 71) CACCACCC 1 chrV:12312530-12312610 ( 20) CACCACCC 1 chrI:4218590-4218670 ( 25) CACCACCA 1 chrIII:12728335-12728415 ( 64) CACCACCA 1 chrV:9895958-9896038 ( 44) CACCACCA 1 chrII:5337605-5337685 ( 39) CACCACCA 1 chrIII:12558211-12558291 ( 46) CACCACAC 1 chrI:470966-471046 ( 9) CACCACAA 1 chrX:9426481-9426561 ( 69) CACCACAA 1 chrII:5821855-5821935 ( 44) CACCACAA 1 chrX:2598552-2598632 ( 66) CCCCACCC 1 chrV:9155-9235 ( 69) CCCCACAC 1 chrIII:5755253-5755333 ( 42) CCCCACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCACMM MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.5702 E= 1.0e+003 -1045 223 -1045 -1045 147 0 -1045 -1045 -1045 223 -1045 -1045 -1045 223 -1045 -1045 181 -1045 -1045 -1045 -1045 223 -1045 -1045 59 142 -1045 -1045 81 123 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCACMM MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.0e+003 0.000000 1.000000 0.000000 0.000000 0.785714 0.214286 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.428571 0.571429 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCACMM MEME-2 regular expression -------------------------------------------------------------------------------- C[AC]CCAC[CA][AC] -------------------------------------------------------------------------------- Time 11.23 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGCGGCC MEME-3 width = 8 sites = 2 llr = 25 E-value = 2.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGCGGCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aa:a::aa probability G ::a:aa:: matrix T :::::::: bits 2.2 ******** 2.0 ******** 1.8 ******** 1.6 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCGCGGCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGGCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:461707-461787 37 4.52e-06 CCTAACATCT CCGCGGCC GCCCAGTGGT chrV:2638695-2638775 12 4.52e-06 TTTGCGGTGG CCGCGGCC GTGAAAATGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGGCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:461707-461787 4.5e-06 36_[+3]_36 chrV:2638695-2638775 4.5e-06 11_[+3]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGGCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGCGGCC width=8 seqs=2 chrI:461707-461787 ( 37) CCGCGGCC 1 chrV:2638695-2638775 ( 12) CCGCGGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGGCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 2.5e+004 -765 222 -765 -765 -765 222 -765 -765 -765 -765 220 -765 -765 222 -765 -765 -765 -765 220 -765 -765 -765 220 -765 -765 222 -765 -765 -765 222 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGGCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.5e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCGGCC MEME-3 regular expression -------------------------------------------------------------------------------- CCGCGGCC -------------------------------------------------------------------------------- Time 14.85 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCTCCCC MEME-4 width = 8 sites = 2 llr = 24 E-value = 2.7e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCTCCCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aaa:aaaa probability G :::::::: matrix T :::a:::: bits 2.2 *** **** 2.0 *** **** 1.8 ******** 1.6 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCTCCCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTCCCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:7575578-7575658 12 5.88e-06 GTAATCATCA CCCTCCCC ATAATCCCAT chrII:5337605-5337685 7 5.88e-06 CATTCC CCCTCCCC TTCCAACAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTCCCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:7575578-7575658 5.9e-06 11_[+4]_61 chrII:5337605-5337685 5.9e-06 6_[+4]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTCCCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCTCCCC width=8 seqs=2 chrIV:7575578-7575658 ( 12) CCCTCCCC 1 chrII:5337605-5337685 ( 7) CCCTCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTCCCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 2.7e+004 -765 222 -765 -765 -765 222 -765 -765 -765 222 -765 -765 -765 -765 -765 180 -765 222 -765 -765 -765 222 -765 -765 -765 222 -765 -765 -765 222 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTCCCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.7e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCTCCCC MEME-4 regular expression -------------------------------------------------------------------------------- CCCTCCCC -------------------------------------------------------------------------------- Time 18.45 secs. ******************************************************************************** ******************************************************************************** MOTIF CWTTTTCT MEME-5 width = 8 sites = 24 llr = 203 E-value = 8.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CWTTTTCT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :3:::::1 pos.-specific C a2:1::a: probability G :::::::1 matrix T :5a9aa:8 bits 2.2 * * 2.0 * * 1.8 * * *** 1.6 * * *** Relative 1.3 * ***** Entropy 1.1 * ***** (12.2 bits) 0.9 * ****** 0.7 * ****** 0.4 * ****** 0.2 ******** 0.0 -------- Multilevel CTTTTTCT consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWTTTTCT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:12465537-12465617 24 2.51e-05 CTTTTCATAT CTTTTTCT GTTTCTCTCA chrX:11643882-11643962 1 2.51e-05 . CTTTTTCT CCCTCTTGGC chrII:14561189-14561269 67 2.51e-05 GCTCTCTTTT CTTTTTCT GACATT chrV:14391725-14391805 40 2.51e-05 TAGCCGACCA CTTTTTCT CTGGGACACA chrIII:5940967-5941047 1 4.99e-05 . CATTTTCT ATTTTTTCAG chrI:11138503-11138583 34 4.99e-05 AAGGCTTCTC CATTTTCT AGAAGAAGCT chrX:910493-910573 12 4.99e-05 AGAAAACCTG CATTTTCT GTATATGTCT chrX:9989781-9989861 47 4.99e-05 GAAGAATCTC CATTTTCT CAGCTCACAC chrII:6995710-6995790 40 4.99e-05 CCTGAGCCAA CATTTTCT AATCGAATCA chrX:15651180-15651260 37 4.99e-05 ATGCGACCAT CATTTTCT TTTTACACTA chrIII:13275973-13276053 13 6.87e-05 TTTGGCTCTT CCTTTTCT CTCTCTCGTG chrX:3385878-3385958 14 6.87e-05 tcttTTCCTT CCTTTTCT TTCGAGAAGA chrX:8776685-8776765 44 6.87e-05 ACATTGCCTC CCTTTTCT TGGCGGTTTT chrI:7042179-7042259 44 6.87e-05 CATTTTCATT CCTTTTCT CTAATTTTGG chrX:13358790-13358870 45 8.76e-05 GCGCGTTGCA CTTTTTCG CTTTTGGCAA chrX:3115410-3115490 47 1.06e-04 CGGAAGTATT CTTCTTCT CTGGTGGCGC chrIII:668393-668473 7 1.06e-04 CTGCTC CTTCTTCT TCCTCTACCC chrI:4218590-4218670 62 1.06e-04 AAAACGACGT CTTCTTCT TGCCTTCGAG chrX:15127103-15127183 54 1.50e-04 AGATGTCTGG CTTTTTCA AGTGGTGTCC chrIII:13061000-13061080 31 1.50e-04 CTCCAATTTC CATTTTCG TAATGCCAAA chrII:7920307-7920387 17 1.50e-04 CGAAAACTGG CTTTTTCA ACAAAAAAAA chrIV:2656679-2656759 49 1.50e-04 CTTCAAATTG CTTTTTCA CGTGTTTCTC chrI:7025937-7026017 11 1.50e-04 TGTCATTTTA CATTTTCG ATTAATTTTG chrV:13468314-13468394 52 2.12e-04 CGAATGTGTG CGTTTTCT AGGCCATTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWTTTTCT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:12465537-12465617 2.5e-05 23_[+5]_49 chrX:11643882-11643962 2.5e-05 [+5]_72 chrII:14561189-14561269 2.5e-05 66_[+5]_6 chrV:14391725-14391805 2.5e-05 39_[+5]_33 chrIII:5940967-5941047 5e-05 [+5]_72 chrI:11138503-11138583 5e-05 33_[+5]_39 chrX:910493-910573 5e-05 11_[+5]_61 chrX:9989781-9989861 5e-05 46_[+5]_26 chrII:6995710-6995790 5e-05 39_[+5]_33 chrX:15651180-15651260 5e-05 36_[+5]_36 chrIII:13275973-13276053 6.9e-05 12_[+5]_60 chrX:3385878-3385958 6.9e-05 13_[+5]_59 chrX:8776685-8776765 6.9e-05 43_[+5]_29 chrI:7042179-7042259 6.9e-05 43_[+5]_29 chrX:13358790-13358870 8.8e-05 44_[+5]_28 chrX:3115410-3115490 0.00011 46_[+5]_26 chrIII:668393-668473 0.00011 6_[+5]_66 chrI:4218590-4218670 0.00011 61_[+5]_11 chrX:15127103-15127183 0.00015 53_[+5]_19 chrIII:13061000-13061080 0.00015 30_[+5]_42 chrII:7920307-7920387 0.00015 16_[+5]_56 chrIV:2656679-2656759 0.00015 48_[+5]_24 chrI:7025937-7026017 0.00015 10_[+5]_62 chrV:13468314-13468394 0.00021 51_[+5]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWTTTTCT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CWTTTTCT width=8 seqs=24 chrV:12465537-12465617 ( 24) CTTTTTCT 1 chrX:11643882-11643962 ( 1) CTTTTTCT 1 chrII:14561189-14561269 ( 67) CTTTTTCT 1 chrV:14391725-14391805 ( 40) CTTTTTCT 1 chrIII:5940967-5941047 ( 1) CATTTTCT 1 chrI:11138503-11138583 ( 34) CATTTTCT 1 chrX:910493-910573 ( 12) CATTTTCT 1 chrX:9989781-9989861 ( 47) CATTTTCT 1 chrII:6995710-6995790 ( 40) CATTTTCT 1 chrX:15651180-15651260 ( 37) CATTTTCT 1 chrIII:13275973-13276053 ( 13) CCTTTTCT 1 chrX:3385878-3385958 ( 14) CCTTTTCT 1 chrX:8776685-8776765 ( 44) CCTTTTCT 1 chrI:7042179-7042259 ( 44) CCTTTTCT 1 chrX:13358790-13358870 ( 45) CTTTTTCG 1 chrX:3115410-3115490 ( 47) CTTCTTCT 1 chrIII:668393-668473 ( 7) CTTCTTCT 1 chrI:4218590-4218670 ( 62) CTTCTTCT 1 chrX:15127103-15127183 ( 54) CTTTTTCA 1 chrIII:13061000-13061080 ( 31) CATTTTCG 1 chrII:7920307-7920387 ( 17) CTTTTTCA 1 chrIV:2656679-2656759 ( 49) CTTTTTCA 1 chrI:7025937-7026017 ( 11) CATTTTCG 1 chrV:13468314-13468394 ( 52) CGTTTTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWTTTTCT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.2272 E= 8.0e+004 -1123 223 -1123 -1123 23 -36 -237 68 -1123 -1123 -1123 181 -1123 -77 -1123 161 -1123 -1123 -1123 181 -1123 -1123 -1123 181 -1123 223 -1123 -1123 -118 -1123 -79 139 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWTTTTCT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 8.0e+004 0.000000 1.000000 0.000000 0.000000 0.333333 0.166667 0.041667 0.458333 0.000000 0.000000 0.000000 1.000000 0.000000 0.125000 0.000000 0.875000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.125000 0.000000 0.125000 0.750000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CWTTTTCT MEME-5 regular expression -------------------------------------------------------------------------------- C[TA]TTTTCT -------------------------------------------------------------------------------- Time 22.05 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:3673743-3673823 8.05e-01 80 chrV:11971896-11971976 9.84e-01 80 chrX:3677078-3677158 7.01e-01 80 chrII:5124417-5124497 7.29e-01 80 chrIV:10655044-10655124 4.90e-01 80 chrV:1126448-1126528 1.81e-01 80 chrX:3046271-3046351 7.41e-01 80 chrI:7330317-7330397 5.74e-01 80 chrIV:10598296-10598376 1.25e-01 71_[+1(3.22e-05)]_1 chrX:5772682-5772762 6.55e-02 80 chrII:5662759-5662839 3.19e-01 80 chrIV:4490302-4490382 4.50e-01 80 chrX:3686576-3686656 8.72e-01 80 chrIII:8648149-8648229 4.10e-01 80 chrV:12312530-12312610 2.00e-02 19_[+2(7.75e-06)]_53 chrI:8120759-8120839 3.54e-01 80 chrIII:9219596-9219676 7.46e-01 80 chrII:2716307-2716387 9.97e-01 80 chrII:8555692-8555772 6.51e-01 80 chrI:7360579-7360659 9.55e-01 80 chrV:7112370-7112450 8.46e-01 80 chrII:10677401-10677481 6.80e-01 80 chrX:9653657-9653737 7.19e-01 80 chrV:18717518-18717598 1.28e-01 39_[+1(3.22e-05)]_33 chrI:7025937-7026017 2.87e-01 80 chrI:7042179-7042259 7.76e-02 43_[+5(6.87e-05)]_29 chrV:11696059-11696139 6.35e-01 80 chrX:688751-688831 3.24e-01 5_[+1(5.67e-05)]_67 chrX:4897264-4897344 6.68e-01 80 chrX:9577265-9577345 9.17e-01 80 chrV:114797-114877 9.37e-01 80 chrV:5746380-5746460 9.26e-01 80 chrIII:9768631-9768711 4.10e-02 80 chrX:13615338-13615418 1.91e-01 80 chrX:9996204-9996284 6.60e-01 80 chrII:8303378-8303458 1.39e-01 36_[+1(5.67e-05)]_36 chrX:7002089-7002169 4.09e-01 80 chrX:6687933-6688013 2.53e-01 80 chrIII:11921156-11921236 3.32e-02 80 chrIV:15520712-15520792 7.75e-01 80 chrX:15605354-15605434 2.37e-01 80 chrX:8776685-8776765 8.14e-03 43_[+5(6.87e-05)]_29 chrX:6131396-6131476 8.39e-01 80 chrI:1574374-1574454 9.97e-01 80 chrIV:10520057-10520137 1.38e-01 80 chrX:12511250-12511330 7.97e-01 80 chrX:13323673-13323753 6.57e-01 80 chrII:10978517-10978597 1.06e-01 80 chrV:11210810-11210890 3.84e-01 80 chrII:13933678-13933758 6.90e-01 80 chrIII:6351588-6351668 3.73e-02 80 chrIII:723572-723652 1.66e-01 80 chrIII:12082136-12082216 2.22e-02 51_[+4(2.06e-05)]_21 chrIII:4952223-4952303 7.84e-01 80 chrII:14940597-14940677 9.16e-01 80 chrX:3385878-3385958 1.77e-01 13_[+5(6.87e-05)]_59 chrII:14390900-14390980 2.50e-01 80 chrIV:1875794-1875874 1.00e+00 80 chrX:10300955-10301035 8.45e-01 80 chrII:10298287-10298367 9.95e-01 80 chrX:7534579-7534659 3.45e-01 80 chrV:8916399-8916479 4.46e-01 80 chrV:14391725-14391805 1.07e-02 39_[+5(2.51e-05)]_33 chrV:11696875-11696955 4.27e-01 80 chrI:14497851-14497931 2.28e-01 80 chrI:7031456-7031536 1.15e-01 80 chrIII:13461491-13461571 8.91e-01 80 chrX:15651180-15651260 1.50e-03 7_[+1(3.22e-05)]_21_[+5(4.99e-05)]_\ 36 chrIV:17279163-17279243 9.37e-01 80 chrIII:13638377-13638457 3.36e-01 80 chrIV:1475150-1475230 6.37e-01 80 chrV:3616246-3616326 3.62e-01 80 chrI:4055462-4055542 9.56e-01 80 chrIII:12370933-12371013 8.20e-01 80 chrII:5337605-5337685 6.51e-05 6_[+4(5.88e-06)]_24_[+2(1.80e-05)]_\ 34 chrIII:12687573-12687653 2.68e-01 80 chrII:6995710-6995790 9.61e-02 39_[+5(4.99e-05)]_33 chrII:11749143-11749223 2.45e-01 80 chrX:3671951-3672031 3.47e-01 80 chrII:5821855-5821935 5.77e-02 43_[+2(4.20e-05)]_29 chrIV:2656679-2656759 2.64e-01 80 chrII:7920307-7920387 4.28e-02 80 chrI:9166133-9166213 1.25e-02 80 chrX:13506205-13506285 1.17e-02 80 chrIV:12360090-12360170 8.45e-01 80 chrX:12210801-12210881 1.74e-01 80 chrV:9895958-9896038 4.30e-03 43_[+2(1.80e-05)]_29 chrX:2050407-2050487 6.28e-01 80 chrIII:11286875-11286955 1.06e-02 80 chrIV:5803756-5803836 3.52e-01 80 chrX:9989781-9989861 1.40e-02 46_[+5(4.99e-05)]_26 chrV:7894203-7894283 9.95e-01 80 chrX:14799722-14799802 5.03e-01 80 chrI:788164-788244 6.47e-01 80 chrII:14469131-14469211 7.19e-03 70_[+2(7.75e-06)]_2 chrX:3678829-3678909 6.52e-01 80 chrI:7363935-7364015 4.74e-01 80 chrV:10393928-10394008 2.78e-01 80 chrIV:14071493-14071573 4.43e-01 80 chrX:9322068-9322148 7.41e-01 80 chrX:4146290-4146370 1.65e-01 80 chrX:6702265-6702345 4.95e-01 80 chrX:15668812-15668892 3.44e-01 80 chrV:6099459-6099539 4.54e-01 80 chrII:14037548-14037628 5.30e-01 80 chrI:9792184-9792264 1.16e-01 80 chrV:6225044-6225124 8.58e-01 80 chrV:5050255-5050335 7.44e-01 80 chrII:5389292-5389372 2.53e-01 80 chrV:14686575-14686655 6.62e-01 80 chrIII:3560434-3560514 2.00e-01 26_[+1(3.22e-05)]_46 chrV:4732690-4732770 1.42e-01 80 chrV:12024547-12024627 1.17e-01 80 chrV:1418015-1418095 3.25e-01 80 chrIV:15040216-15040296 2.33e-01 80 chrI:6283644-6283724 9.48e-01 80 chrIII:345564-345644 8.78e-01 80 chrIII:12728335-12728415 4.68e-03 63_[+2(1.80e-05)]_9 chrX:3694359-3694439 2.19e-01 80 chrIV:12843119-12843199 6.84e-01 80 chrX:5774360-5774440 6.19e-02 80 chrII:14561189-14561269 2.03e-01 66_[+5(2.51e-05)]_6 chrIV:1056102-1056182 6.05e-01 80 chrI:13421164-13421244 8.14e-01 80 chrIV:12114726-12114806 5.84e-01 80 chrIII:12663857-12663937 2.08e-01 80 chrIII:9623664-9623744 4.62e-01 80 chrX:12419465-12419545 8.19e-01 80 chrX:15264590-15264670 3.50e-01 80 chrV:1575348-1575428 7.77e-01 80 chrIII:6879429-6879509 1.83e-01 80 chrI:4218590-4218670 1.41e-05 24_[+2(1.80e-05)]_15_[+1(5.67e-05)]_\ 25 chrV:18724973-18725053 6.78e-01 80 chrIII:13061000-13061080 1.05e-01 80 chrIII:13626284-13626364 8.76e-01 80 chrIII:884252-884332 2.32e-01 80 chrIII:5225798-5225878 4.85e-02 80 chrIV:3337829-3337909 3.93e-01 80 chrI:10040336-10040416 1.57e-01 80 chrV:18722993-18723073 1.00e+00 80 chrIII:5044972-5045052 7.78e-01 80 chrI:6288694-6288774 7.72e-02 80 chrI:467058-467138 2.74e-01 80 chrIV:16415774-16415854 7.56e-01 80 chrII:6141105-6141185 5.18e-01 80 chrI:13422803-13422883 5.82e-01 80 chrX:910493-910573 9.99e-03 11_[+5(4.99e-05)]_61 chrIII:13621992-13622072 8.13e-01 80 chrII:5782986-5783066 6.84e-01 80 chrIII:11358426-11358506 4.37e-02 80 chrI:9665435-9665515 3.95e-01 80 chrX:13696305-13696385 1.72e-01 80 chrI:2072015-2072095 3.67e-01 80 chrX:9426481-9426561 1.83e-02 68_[+2(4.20e-05)]_4 chrIII:7335990-7336070 6.03e-01 80 chrV:5981933-5982013 9.06e-01 80 chrIII:668393-668473 2.04e-02 80 chrIII:11091801-11091881 2.42e-01 80 chrIII:6990976-6991056 4.06e-01 80 chrI:5589114-5589194 8.98e-02 80 chrX:15633815-15633895 4.78e-01 80 chrV:11533781-11533861 1.51e-01 80 chrIII:13426656-13426736 1.19e-01 80 chrIII:3476384-3476464 9.67e-01 80 chrV:11638811-11638891 8.01e-01 80 chrV:15083619-15083699 6.24e-01 80 chrII:13369773-13369853 4.69e-01 80 chrII:5950812-5950892 9.22e-01 80 chrV:4961498-4961578 4.75e-01 80 chrV:7105426-7105506 1.90e-01 80 chrV:6461560-6461640 8.22e-01 80 chrV:5917863-5917943 5.31e-01 80 chrV:10178335-10178415 8.16e-01 80 chrIII:12558211-12558291 3.96e-03 45_[+2(2.83e-05)]_27 chrX:967817-967897 3.27e-01 80 chrI:7083245-7083325 6.97e-01 80 chrV:727484-727564 9.22e-01 80 chrII:11637044-11637124 7.30e-01 80 chrIII:10856953-10857033 9.29e-01 80 chrI:11138503-11138583 1.02e-02 33_[+5(4.99e-05)]_39 chrI:12920892-12920972 9.28e-01 80 chrX:13154734-13154814 3.79e-01 80 chrIII:5755253-5755333 1.48e-02 41_[+2(6.33e-05)]_31 chrI:3987238-3987318 2.93e-01 80 chrI:2710591-2710671 9.52e-01 80 chrI:11518025-11518105 3.69e-01 80 chrIV:2990658-2990738 1.35e-01 80 chrI:7518408-7518488 6.00e-01 80 chrI:7084132-7084212 7.15e-01 80 chrX:15535439-15535519 4.29e-01 80 chrV:9155-9235 5.73e-03 68_[+2(6.33e-05)]_4 chrIII:3139217-3139297 9.13e-02 80 chrI:2668374-2668454 1.47e-01 80 chrIII:5758939-5759019 9.61e-01 80 chrX:7300648-7300728 9.52e-01 80 chrV:2638695-2638775 2.06e-02 11_[+3(4.52e-06)]_61 chrII:5836462-5836542 6.05e-01 80 chrX:2464173-2464253 6.71e-01 80 chrIII:5068963-5069043 9.58e-02 80 chrV:11641658-11641738 6.55e-01 80 chrX:3115410-3115490 3.03e-01 80 chrIII:2033047-2033127 7.76e-01 80 chrX:5724686-5724766 7.26e-01 80 chrIV:7575578-7575658 1.31e-04 11_[+4(5.88e-06)]_61 chrII:6347900-6347980 9.89e-01 80 chrX:15127103-15127183 1.61e-01 80 chrIV:1691745-1691825 2.34e-01 80 chrIV:761949-762029 1.00e+00 80 chrV:13715484-13715564 5.91e-01 80 chrIII:10270928-10271008 3.61e-01 80 chrV:6226921-6227001 7.10e-02 80 chrIV:8008016-8008096 1.00e+00 80 chrIII:10460715-10460795 4.28e-01 80 chrX:17544524-17544604 5.58e-01 80 chrIII:13187905-13187985 9.53e-03 58_[+2(7.75e-06)]_14 chrV:18709912-18709992 6.95e-01 80 chrIV:10511957-10512037 8.47e-01 80 chrIII:13474669-13474749 1.85e-01 48_[+1(3.22e-05)]_24 chrI:470966-471046 3.78e-02 8_[+2(4.20e-05)]_64 chrX:2972547-2972627 2.67e-01 80 chrIII:6551835-6551915 8.40e-02 7_[+1(3.22e-05)]_3_[+1(3.22e-05)]_\ 54 chrX:11643882-11643962 1.62e-03 [+5(2.51e-05)]_72 chrIII:11317269-11317349 6.69e-01 80 chrV:2127187-2127267 2.68e-01 80 chrIII:5940967-5941047 1.26e-01 [+5(4.99e-05)]_72 chrIII:6135583-6135663 1.95e-01 80 chrX:2598552-2598632 1.18e-02 65_[+2(4.78e-05)]_7 chrV:13468314-13468394 2.12e-01 80 chrIII:11946491-11946571 6.56e-02 80 chrV:11039665-11039745 9.38e-01 80 chrIV:11871900-11871980 1.88e-01 80 chrI:3829770-3829850 4.04e-01 80 chrII:6913464-6913544 8.45e-01 80 chrV:5284756-5284836 1.00e+00 80 chrV:13313153-13313233 7.89e-01 80 chrI:7772597-7772677 6.65e-01 80 chrIV:9074378-9074458 1.48e-01 80 chrV:14055194-14055274 1.42e-01 80 chrV:12870084-12870164 2.33e-02 80 chrX:13358790-13358870 2.14e-01 44_[+5(8.76e-05)]_28 chrV:12510282-12510362 1.00e+00 80 chrX:11241716-11241796 7.31e-01 80 chrII:12211961-12212041 5.38e-01 80 chrI:461707-461787 1.27e-02 36_[+3(4.52e-06)]_36 chrIII:9052001-9052081 5.13e-01 80 chrI:1823109-1823189 8.46e-01 80 chrIII:13275973-13276053 3.08e-01 12_[+5(6.87e-05)]_60 chrIII:11119447-11119527 6.66e-01 80 chrV:12465537-12465617 1.85e-01 23_[+5(2.51e-05)]_49 chrX:601499-601579 7.70e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************