******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-62.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrM:13142-13222 1.0000 80 chrM:634-714 1.0000 80 chrM:13602-13682 1.0000 80 chrM:6790-6870 1.0000 80 chrM:6527-6607 1.0000 80 chrM:10458-10538 1.0000 80 chrM:7655-7735 1.0000 80 chrM:5534-5614 1.0000 80 chrM:4027-4107 1.0000 80 chrM:2672-2752 1.0000 80 chrM:9672-9752 1.0000 80 chrX:1503617-1503697 1.0000 80 chrM:3625-3705 1.0000 80 chrM:11474-11554 1.0000 80 chrM:2457-2537 1.0000 80 chrI:7082495-7082575 1.0000 80 chrI:8702020-8702100 1.0000 80 chrM:1593-1673 1.0000 80 chrIV:8431805-8431885 1.0000 80 chrM:4702-4782 1.0000 80 chrM:9382-9462 1.0000 80 chrM:1315-1395 1.0000 80 chrM:12413-12493 1.0000 80 chrIII:13296738-13296818 1.0000 80 chrM:2197-2277 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ceh-62/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-62.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 25 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 2000 N= 25 sample: seed= 0 hsfrac= 0 searchsize= 2000 norand= no csites= 1000 Letter frequencies in dataset: A 0.323 C 0.0855 G 0.135 T 0.458 Background letter frequencies (from file dataset with add-one prior applied): A 0.322 C 0.0858 G 0.135 T 0.457 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RGSKMCAS MEME-1 width = 8 sites = 7 llr = 71 E-value = 4.7e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGSKMCAS MEME-1 Description -------------------------------------------------------------------------------- Simplified A 31::6:a: pos.-specific C 1:4:47:6 probability G 6966:3:4 matrix T :::4:::: bits 3.5 3.2 2.8 2.5 * Relative 2.1 ** * * Entropy 1.8 ** *** (14.6 bits) 1.4 *** **** 1.1 ******** 0.7 ******** 0.4 ******** 0.0 -------- Multilevel GGGGACAC consensus A CTCG G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGSKMCAS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrM:4702-4782 48 2.84e-07 TCATTTTAAT GGGGCCAG GTTATTTTTT chrX:1503617-1503697 27 3.27e-06 taggtgaagt agcgccag tggggatttt chrM:3625-3705 43 4.27e-06 GGTGTAGCAC CGCTCCAC TTTTGAATTT chrM:13142-13222 25 6.94e-06 TAATTCTAAG GGGTACAC CTTATTTTTA chrM:12413-12493 48 2.21e-05 TGGTAGCCTT GAGGACAC TTTCACAAAT chrI:8702020-8702100 15 2.29e-05 ACAACGAGAG AGCGAGAC TTCGTGAGAA chrM:10458-10538 21 4.33e-05 TAGAAACAAA GGGTAGAG TAAATATTAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGSKMCAS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrM:4702-4782 2.8e-07 47_[+1]_25 chrX:1503617-1503697 3.3e-06 26_[+1]_46 chrM:3625-3705 4.3e-06 42_[+1]_30 chrM:13142-13222 6.9e-06 24_[+1]_48 chrM:12413-12493 2.2e-05 47_[+1]_25 chrI:8702020-8702100 2.3e-05 14_[+1]_58 chrM:10458-10538 4.3e-05 20_[+1]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGSKMCAS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGSKMCAS width=8 seqs=7 chrM:4702-4782 ( 48) GGGGCCAG 1 chrX:1503617-1503697 ( 27) AGCGCCAG 1 chrM:3625-3705 ( 43) CGCTCCAC 1 chrM:13142-13222 ( 25) GGGTACAC 1 chrM:12413-12493 ( 48) GAGGACAC 1 chrI:8702020-8702100 ( 15) AGCGAGAC 1 chrM:10458-10538 ( 21) GGGTAGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGSKMCAS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 1825 bayes= 7.86403 E= 4.7e-002 -17 73 208 -945 -117 -945 267 -945 -945 232 208 -945 -945 -945 208 -9 83 232 -945 -945 -945 306 108 -945 163 -945 -945 -945 -945 273 167 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGSKMCAS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.7e-002 0.285714 0.142857 0.571429 0.000000 0.142857 0.000000 0.857143 0.000000 0.000000 0.428571 0.571429 0.000000 0.000000 0.000000 0.571429 0.428571 0.571429 0.428571 0.000000 0.000000 0.000000 0.714286 0.285714 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.571429 0.428571 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGSKMCAS MEME-1 regular expression -------------------------------------------------------------------------------- [GA]G[GC][GT][AC][CG]A[CG] -------------------------------------------------------------------------------- Time 1.36 secs. ******************************************************************************** ******************************************************************************** MOTIF YCWGCRCC MEME-2 width = 8 sites = 2 llr = 28 E-value = 2.4e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif YCWGCRCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::5::5:: pos.-specific C 5a::a:aa probability G :::a:5:: matrix T 5:5::::: bits 3.5 * * ** 3.2 * * ** 2.8 * ** ** 2.5 * ** ** Relative 2.1 * ** ** Entropy 1.8 * ** ** (20.0 bits) 1.4 ** ***** 1.1 ** ***** 0.7 ** ***** 0.4 ******** 0.0 -------- Multilevel CCAGCACC consensus T T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCWGCRCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:13296738-13296818 7 6.60e-08 AAAGTG CCTGCGCC TTTAAATTTT chrM:7655-7735 24 9.22e-07 TGTAGGGTTT TCAGCACC ATTAGTCTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCWGCRCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:13296738-13296818 6.6e-08 6_[+2]_66 chrM:7655-7735 9.2e-07 23_[+2]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCWGCRCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YCWGCRCC width=8 seqs=2 chrIII:13296738-13296818 ( 7) CCTGCGCC 1 chrM:7655-7735 ( 24) TCAGCACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCWGCRCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 1825 bayes= 9.8321 E= 2.4e+001 -765 254 -765 13 -765 354 -765 -765 63 -765 -765 13 -765 -765 289 -765 -765 354 -765 -765 63 -765 189 -765 -765 354 -765 -765 -765 354 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCWGCRCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.4e+001 0.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCWGCRCC MEME-2 regular expression -------------------------------------------------------------------------------- [CT]C[AT]GC[AG]CC -------------------------------------------------------------------------------- Time 1.73 secs. ******************************************************************************** ******************************************************************************** MOTIF CRMAAMGM MEME-3 width = 8 sites = 5 llr = 50 E-value = 1.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CRMAAMGM MEME-3 Description -------------------------------------------------------------------------------- Simplified A 244aa4:6 pos.-specific C 8:4::6:4 probability G :62:::a: matrix T :::::::: bits 3.5 3.2 2.8 * 2.5 * * Relative 2.1 * * Entropy 1.8 * **** (14.4 bits) 1.4 ** ***** 1.1 ******** 0.7 ******** 0.4 ******** 0.0 -------- Multilevel CGAAACGA consensus AAC A C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRMAAMGM MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:13296738-13296818 46 4.87e-07 TTTGTTTCTA CGCAACGA TTTTTCTTCT chrI:7082495-7082575 4 8.36e-06 TCA CGGAAAGC ACTTTTCTTC chrIV:8431805-8431885 42 1.07e-05 TCAACTATTT CGAAAAGC TTTAAAACAT chrX:1503617-1503697 68 1.56e-05 tatgctgatc caaaacga ccgaa chrI:8702020-8702100 4 4.32e-05 TGC AACAACGA GAGAGCGAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRMAAMGM MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:13296738-13296818 4.9e-07 45_[+3]_27 chrI:7082495-7082575 8.4e-06 3_[+3]_69 chrIV:8431805-8431885 1.1e-05 41_[+3]_31 chrX:1503617-1503697 1.6e-05 67_[+3]_5 chrI:8702020-8702100 4.3e-05 3_[+3]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRMAAMGM MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CRMAAMGM width=8 seqs=5 chrIII:13296738-13296818 ( 46) CGCAACGA 1 chrI:7082495-7082575 ( 4) CGGAAAGC 1 chrIV:8431805-8431885 ( 42) CGAAAAGC 1 chrX:1503617-1503697 ( 68) CAAAACGA 1 chrI:8702020-8702100 ( 4) AACAACGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRMAAMGM MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 1825 bayes= 9.45311 E= 1.1e+002 -69 322 -897 -897 31 -897 215 -897 31 222 57 -897 163 -897 -897 -897 163 -897 -897 -897 31 280 -897 -897 -897 -897 289 -897 89 222 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRMAAMGM MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.1e+002 0.200000 0.800000 0.000000 0.000000 0.400000 0.000000 0.600000 0.000000 0.400000 0.400000 0.200000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.400000 0.600000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.600000 0.400000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRMAAMGM MEME-3 regular expression -------------------------------------------------------------------------------- [CA][GA][ACG]AA[CA]G[AC] -------------------------------------------------------------------------------- Time 2.10 secs. ******************************************************************************** ******************************************************************************** MOTIF GWGGKAAM MEME-4 width = 8 sites = 5 llr = 47 E-value = 9.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GWGGKAAM MEME-4 Description -------------------------------------------------------------------------------- Simplified A :6:2:a84 pos.-specific C :::::::6 probability G a:a84:2: matrix T :4::6::: bits 3.5 3.2 2.8 * * 2.5 * * Relative 2.1 * * Entropy 1.8 * ** * * (13.6 bits) 1.4 * ** * * 1.1 * ** *** 0.7 * ****** 0.4 ******** 0.0 -------- Multilevel GAGGTAAC consensus T AG GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGGKAAM MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrM:1593-1673 37 5.92e-06 AACATGTTTT GAGGTAAC TCGTAGTTTT chrM:4027-4107 56 1.60e-05 TTTTCTCATT GAGGGAAA TTTTTAAATA chrM:12413-12493 37 1.79e-05 TTTGAAGAAG GTGGTAGC CTTGAGGACA chrM:4702-4782 6 3.88e-05 TGTAT GAGGTAAA TTTTGGATGA chrI:8702020-8702100 26 4.30e-05 GCGAGACTTC GTGAGAAC ATAAGAATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGGKAAM MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrM:1593-1673 5.9e-06 36_[+4]_36 chrM:4027-4107 1.6e-05 55_[+4]_17 chrM:12413-12493 1.8e-05 36_[+4]_36 chrM:4702-4782 3.9e-05 5_[+4]_67 chrI:8702020-8702100 4.3e-05 25_[+4]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGGKAAM MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GWGGKAAM width=8 seqs=5 chrM:1593-1673 ( 37) GAGGTAAC 1 chrM:4027-4107 ( 56) GAGGGAAA 1 chrM:12413-12493 ( 37) GTGGTAGC 1 chrM:4702-4782 ( 6) GAGGTAAA 1 chrI:8702020-8702100 ( 26) GTGAGAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGGKAAM MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 1825 bayes= 8.75997 E= 9.5e+002 -897 -897 289 -897 89 -897 -897 -19 -897 -897 289 -897 -69 -897 257 -897 -897 -897 157 39 163 -897 -897 -897 131 -897 57 -897 31 280 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGGKAAM MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 9.5e+002 0.000000 0.000000 1.000000 0.000000 0.600000 0.000000 0.000000 0.400000 0.000000 0.000000 1.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.000000 0.000000 0.400000 0.600000 1.000000 0.000000 0.000000 0.000000 0.800000 0.000000 0.200000 0.000000 0.400000 0.600000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWGGKAAM MEME-4 regular expression -------------------------------------------------------------------------------- G[AT]G[GA][TG]A[AG][CA] -------------------------------------------------------------------------------- Time 2.52 secs. ******************************************************************************** ******************************************************************************** MOTIF GGTKTAGC MEME-5 width = 8 sites = 2 llr = 24 E-value = 2.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGTKTAGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::a:: pos.-specific C :::::::a probability G aa:5::a: matrix T ::a5a::: bits 3.5 * 3.2 * 2.8 ** ** 2.5 ** ** Relative 2.1 ** ** Entropy 1.8 ** *** (17.1 bits) 1.4 ** *** 1.1 ******** 0.7 ******** 0.4 ******** 0.0 -------- Multilevel GGTGTAGC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTKTAGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrM:3625-3705 33 1.92e-06 ATTGAAAATT GGTGTAGC ACCGCTCCAC chrM:5534-5614 26 8.40e-06 tatttatttt ggtttagc ttatttaata -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTKTAGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrM:3625-3705 1.9e-06 32_[+5]_40 chrM:5534-5614 8.4e-06 25_[+5]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTKTAGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGTKTAGC width=8 seqs=2 chrM:3625-3705 ( 33) GGTGTAGC 1 chrM:5534-5614 ( 26) GGTTTAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTKTAGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 1825 bayes= 9.8321 E= 2.1e+003 -765 -765 289 -765 -765 -765 289 -765 -765 -765 -765 113 -765 -765 189 13 -765 -765 -765 113 163 -765 -765 -765 -765 -765 289 -765 -765 354 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTKTAGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.1e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGTKTAGC MEME-5 regular expression -------------------------------------------------------------------------------- GGT[GT]TAGC -------------------------------------------------------------------------------- Time 2.88 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrM:13142-13222 2.94e-03 24_[+1(6.94e-06)]_48 chrM:634-714 6.35e-01 80 chrM:13602-13682 1.00e+00 80 chrM:6790-6870 3.75e-01 80 chrM:6527-6607 9.27e-01 80 chrM:10458-10538 3.82e-02 20_[+1(4.33e-05)]_52 chrM:7655-7735 4.41e-03 23_[+2(9.22e-07)]_49 chrM:5534-5614 2.78e-02 25_[+5(8.40e-06)]_47 chrM:4027-4107 1.05e-01 55_[+4(1.60e-05)]_17 chrM:2672-2752 6.38e-01 80 chrM:9672-9752 3.79e-01 80 chrX:1503617-1503697 6.31e-08 26_[+1(3.27e-06)]_33_[+3(1.56e-05)]_\ 5 chrM:3625-3705 1.06e-07 32_[+5(1.92e-06)]_2_[+1(4.27e-06)]_\ 30 chrM:11474-11554 4.02e-01 80 chrM:2457-2537 9.58e-01 80 chrI:7082495-7082575 1.60e-02 3_[+3(8.36e-06)]_69 chrI:8702020-8702100 1.66e-05 3_[+3(4.32e-05)]_3_[+1(2.29e-05)]_3_\ [+4(4.30e-05)]_47 chrM:1593-1673 2.94e-02 36_[+4(5.92e-06)]_36 chrIV:8431805-8431885 1.44e-02 41_[+3(1.07e-05)]_31 chrM:4702-4782 9.78e-05 5_[+4(3.88e-05)]_34_[+1(2.84e-07)]_\ 25 chrM:9382-9462 9.68e-01 80 chrM:1315-1395 9.02e-01 80 chrM:12413-12493 1.33e-05 36_[+4(1.79e-05)]_3_[+1(2.21e-05)]_\ 25 chrIII:13296738-13296818 5.25e-07 6_[+2(6.60e-08)]_31_[+3(4.87e-07)]_\ 27 chrM:2197-2277 9.92e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************