******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-6.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:8501942-8502022 1.0000 80 chrM:165-245 1.0000 80 chrM:5276-5356 1.0000 80 chrM:4042-4122 1.0000 80 chrM:1836-1916 1.0000 80 chrII:6846867-6846947 1.0000 80 chrX:15347870-15347950 1.0000 80 chrX:3914433-3914513 1.0000 80 chrV:13869045-13869125 1.0000 80 chrIII:445621-445701 1.0000 80 chrV:19373493-19373573 1.0000 80 chrX:7224668-7224748 1.0000 80 chrM:10047-10127 1.0000 80 chrV:16622081-16622161 1.0000 80 chrV:14496600-14496680 1.0000 80 chrIV:1981107-1981187 1.0000 80 chrIII:3873562-3873642 1.0000 80 chrX:3969480-3969560 1.0000 80 chrIII:3600061-3600141 1.0000 80 chrI:11860628-11860708 1.0000 80 chrX:11662735-11662815 1.0000 80 chrM:11365-11445 1.0000 80 chrM:321-401 1.0000 80 chrX:2552276-2552356 1.0000 80 chrIV:11584150-11584230 1.0000 80 chrII:10065544-10065624 1.0000 80 chrI:10788812-10788892 1.0000 80 chrIII:4626373-4626453 1.0000 80 chrX:14649408-14649488 1.0000 80 chrM:2829-2909 1.0000 80 chrIV:1377766-1377846 1.0000 80 chrI:14130260-14130340 1.0000 80 chrX:15668245-15668325 1.0000 80 chrIII:11427853-11427933 1.0000 80 chrI:14325480-14325560 1.0000 80 chrII:4130416-4130496 1.0000 80 chrIII:3499992-3500072 1.0000 80 chrV:18720158-18720238 1.0000 80 chrX:16602613-16602693 1.0000 80 chrX:5821120-5821200 1.0000 80 chrIII:1212977-1213057 1.0000 80 chrX:9102319-9102399 1.0000 80 chrX:5056378-5056458 1.0000 80 chrV:19722994-19723074 1.0000 80 chrIV:16168908-16168988 1.0000 80 chrI:11609239-11609319 1.0000 80 chrI:2254283-2254363 1.0000 80 chrI:8499947-8500027 1.0000 80 chrM:7621-7701 1.0000 80 chrX:7457741-7457821 1.0000 80 chrX:2885505-2885585 1.0000 80 chrIV:3521964-3522044 1.0000 80 chrX:10591864-10591944 1.0000 80 chrI:11203500-11203580 1.0000 80 chrM:8249-8329 1.0000 80 chrX:8818151-8818231 1.0000 80 chrIV:1908616-1908696 1.0000 80 chrI:6154407-6154487 1.0000 80 chrIII:8069422-8069502 1.0000 80 chrM:961-1041 1.0000 80 chrII:5293420-5293500 1.0000 80 chrX:3994576-3994656 1.0000 80 chrIII:11560688-11560768 1.0000 80 chrX:5354685-5354765 1.0000 80 chrIII:13225186-13225266 1.0000 80 chrII:7153140-7153220 1.0000 80 chrIV:2657492-2657572 1.0000 80 chrIV:13549552-13549632 1.0000 80 chrM:9040-9120 1.0000 80 chrX:15877148-15877228 1.0000 80 chrI:2809450-2809530 1.0000 80 chrI:9176250-9176330 1.0000 80 chrX:15273541-15273621 1.0000 80 chrI:4175880-4175960 1.0000 80 chrI:7712358-7712438 1.0000 80 chrX:3102987-3103067 1.0000 80 chrIV:14032759-14032839 1.0000 80 chrII:14710091-14710171 1.0000 80 chrX:14504440-14504520 1.0000 80 chrX:14229586-14229666 1.0000 80 chrM:7115-7195 1.0000 80 chrIV:16388419-16388499 1.0000 80 chrIII:3620860-3620940 1.0000 80 chrX:2043320-2043400 1.0000 80 chrX:2907473-2907553 1.0000 80 chrIV:10817167-10817247 1.0000 80 chrX:5368307-5368387 1.0000 80 chrX:3348035-3348115 1.0000 80 chrX:10597733-10597813 1.0000 80 chrV:3092517-3092597 1.0000 80 chrIII:10856995-10857075 1.0000 80 chrV:12510127-12510207 1.0000 80 chrI:5084740-5084820 1.0000 80 chrIV:9316200-9316280 1.0000 80 chrI:11090190-11090270 1.0000 80 chrIV:14576646-14576726 1.0000 80 chrIII:5769880-5769960 1.0000 80 chrX:2451198-2451278 1.0000 80 chrX:8638893-8638973 1.0000 80 chrI:6136557-6136637 1.0000 80 chrV:8785764-8785844 1.0000 80 chrV:18712174-18712254 1.0000 80 chrV:15515526-15515606 1.0000 80 chrX:8156099-8156179 1.0000 80 chrIII:11353556-11353636 1.0000 80 chrIII:1122404-1122484 1.0000 80 chrII:9258219-9258299 1.0000 80 chrII:8131531-8131611 1.0000 80 chrII:7001598-7001678 1.0000 80 chrX:6961346-6961426 1.0000 80 chrI:9268960-9269040 1.0000 80 chrIV:2802268-2802348 1.0000 80 chrX:5816437-5816517 1.0000 80 chrX:10589295-10589375 1.0000 80 chrII:13790907-13790987 1.0000 80 chrII:3567787-3567867 1.0000 80 chrII:8748126-8748206 1.0000 80 chrIII:12399898-12399978 1.0000 80 chrI:3842459-3842539 1.0000 80 chrM:7315-7395 1.0000 80 chrII:13985913-13985993 1.0000 80 chrII:11889551-11889631 1.0000 80 chrIII:3664370-3664450 1.0000 80 chrV:14876409-14876489 1.0000 80 chrV:4647976-4648056 1.0000 80 chrII:4585580-4585660 1.0000 80 chrX:9296754-9296834 1.0000 80 chrIII:4666968-4667048 1.0000 80 chrX:8925601-8925681 1.0000 80 chrIV:842807-842887 1.0000 80 chrIII:4010349-4010429 1.0000 80 chrIII:8653055-8653135 1.0000 80 chrX:13143474-13143554 1.0000 80 chrIV:4454701-4454781 1.0000 80 chrX:12367706-12367786 1.0000 80 chrIII:9104227-9104307 1.0000 80 chrV:6880750-6880830 1.0000 80 chrII:1242528-1242608 1.0000 80 chrIII:10432235-10432315 1.0000 80 chrX:17609864-17609944 1.0000 80 chrI:11670272-11670352 1.0000 80 chrIV:16684379-16684459 1.0000 80 chrI:7084573-7084653 1.0000 80 chrX:13945735-13945815 1.0000 80 chrII:7635443-7635523 1.0000 80 chrIII:11702221-11702301 1.0000 80 chrV:3587756-3587836 1.0000 80 chrM:3031-3111 1.0000 80 chrIV:11605093-11605173 1.0000 80 chrX:10821343-10821423 1.0000 80 chrX:4789131-4789211 1.0000 80 chrIV:6646035-6646115 1.0000 80 chrIII:13474611-13474691 1.0000 80 chrX:13584063-13584143 1.0000 80 chrI:2714005-2714085 1.0000 80 chrX:12629528-12629608 1.0000 80 chrX:5818397-5818477 1.0000 80 chrI:9051176-9051256 1.0000 80 chrI:1575678-1575758 1.0000 80 chrV:14855766-14855846 1.0000 80 chrV:10041586-10041666 1.0000 80 chrV:14792419-14792499 1.0000 80 chrX:16928289-16928369 1.0000 80 chrIII:6133472-6133552 1.0000 80 chrII:11088315-11088395 1.0000 80 chrIII:6805508-6805588 1.0000 80 chrV:19521536-19521616 1.0000 80 chrIII:7030542-7030622 1.0000 80 chrIII:535347-535427 1.0000 80 chrX:2321889-2321969 1.0000 80 chrI:11092168-11092248 1.0000 80 chrII:14635371-14635451 1.0000 80 chrX:7794475-7794555 1.0000 80 chrX:12086461-12086541 1.0000 80 chrII:5577173-5577253 1.0000 80 chrX:13415121-13415201 1.0000 80 chrI:13310334-13310414 1.0000 80 chrIII:8650392-8650472 1.0000 80 chrI:9605777-9605857 1.0000 80 chrIV:5535978-5536058 1.0000 80 chrII:11959337-11959417 1.0000 80 chrII:5772918-5772998 1.0000 80 chrX:10524638-10524718 1.0000 80 chrI:3873930-3874010 1.0000 80 chrV:19622486-19622566 1.0000 80 chrII:7708749-7708829 1.0000 80 chrIV:11928534-11928614 1.0000 80 chrII:6565197-6565277 1.0000 80 chrX:14115662-14115742 1.0000 80 chrIV:16382416-16382496 1.0000 80 chrX:12347993-12348073 1.0000 80 chrM:6046-6126 1.0000 80 chrX:12407515-12407595 1.0000 80 chrIII:668462-668542 1.0000 80 chrIII:7659571-7659651 1.0000 80 chrX:6220130-6220210 1.0000 80 chrX:8646440-8646520 1.0000 80 chrM:2192-2272 1.0000 80 chrM:9250-9330 1.0000 80 chrV:7231003-7231083 1.0000 80 chrV:9219434-9219514 1.0000 80 chrX:7234935-7235015 1.0000 80 chrV:14833432-14833512 1.0000 80 chrM:12451-12531 1.0000 80 chrIII:4281013-4281093 1.0000 80 chrV:13396558-13396638 1.0000 80 chrII:11537318-11537398 1.0000 80 chrV:16699862-16699942 1.0000 80 chrIII:10808049-10808129 1.0000 80 chrIII:11093617-11093697 1.0000 80 chrII:3999635-3999715 1.0000 80 chrIV:5038941-5039021 1.0000 80 chrIII:13720512-13720592 1.0000 80 chrX:9078314-9078394 1.0000 80 chrIII:1824676-1824756 1.0000 80 chrX:14804841-14804921 1.0000 80 chrII:7810977-7811057 1.0000 80 chrII:4942506-4942586 1.0000 80 chrV:14689460-14689540 1.0000 80 chrX:16551469-16551549 1.0000 80 chrIII:3916793-3916873 1.0000 80 chrIII:4369414-4369494 1.0000 80 chrX:14636905-14636985 1.0000 80 chrM:4638-4718 1.0000 80 chrII:3439353-3439433 1.0000 80 chrIII:1601586-1601666 1.0000 80 chrIV:3232989-3233069 1.0000 80 chrI:933477-933557 1.0000 80 chrIV:1388235-1388315 1.0000 80 chrII:4238026-4238106 1.0000 80 chrI:6283474-6283554 1.0000 80 chrI:10927508-10927588 1.0000 80 chrV:8235460-8235540 1.0000 80 chrIII:8106652-8106732 1.0000 80 chrI:11978715-11978795 1.0000 80 chrIII:7642187-7642267 1.0000 80 chrI:6280504-6280584 1.0000 80 chrX:8971540-8971620 1.0000 80 chrV:5284656-5284736 1.0000 80 chrV:12024282-12024362 1.0000 80 chrV:16553122-16553202 1.0000 80 chrV:53452-53532 1.0000 80 chrIV:14794147-14794227 1.0000 80 chrII:6248634-6248714 1.0000 80 chrV:11239347-11239427 1.0000 80 chrX:6867877-6867957 1.0000 80 chrX:5319401-5319481 1.0000 80 chrII:3521510-3521590 1.0000 80 chrX:4444215-4444295 1.0000 80 chrIV:11310773-11310853 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ceh-6/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-6.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.234 C 0.249 G 0.257 T 0.259 Background letter frequencies (from file dataset with add-one prior applied): A 0.234 C 0.249 G 0.257 T 0.259 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CACACACA MEME-1 width = 8 sites = 23 llr = 208 E-value = 3.7e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACACACA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :6:a:9:9 pos.-specific C a:a:a:9: probability G :3:::1:: matrix T :1::::11 bits 2.1 * * * 1.9 * *** 1.7 * *** ** 1.5 * ****** Relative 1.3 * ****** Entropy 1.0 * ****** (13.1 bits) 0.8 * ****** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:14636905-14636985 21 1.15e-05 GGCCAGTTTC cacacaca cacacacaca chrX:2321889-2321969 48 1.15e-05 cacacacaca cacacaca cacGTGGTCT chrII:11088315-11088395 11 1.15e-05 TAATCAGGGA CACACACA AGTGAATGCG chrI:1575678-1575758 2 1.15e-05 A CACACACA CATGTAGGAC chrX:15668245-15668325 71 1.15e-05 tcgcacttca cacacaca ca chrIII:4626373-4626453 15 1.15e-05 cacacacaca cacacaca cacaTTATTT chrV:13869045-13869125 45 1.15e-05 cacacacaca cacacaca AGACTACCTA chrX:7234935-7235015 16 2.42e-05 CTGCCACATA CGCACACA AAACACATTG chrIV:11605093-11605173 14 2.42e-05 GCAAGTGTGC CGCACACA GTTTGTTCAC chrX:9296754-9296834 51 2.42e-05 GCCACTATGC CGCACACA ACTGGGTGAC chrII:11889551-11889631 67 2.42e-05 AATCGGGTCA CGCACACA GTACCG chrX:2885505-2885585 9 2.42e-05 CACACATA CGCACACA CTGGCCGAAT chrII:6248634-6248714 52 3.69e-05 GCTATTGTCG CTCACACA ATGTAGGTTC chrX:12629528-12629608 73 3.69e-05 TTGAAacaca ctcacaca chrI:6283474-6283554 21 7.43e-05 ACTCAAGCAG CACACGCA AACATCCATC chrIII:13720512-13720592 51 7.43e-05 ATGTCACCAC CACACATA TGCGCACACG chrV:13396558-13396638 5 7.43e-05 CATA CACACATA CGCATACACA chrI:4175880-4175960 68 7.43e-05 GGCTAGCAGG CACACACT CTGCG chrX:15877148-15877228 25 7.43e-05 actcacgcac cacacgca cgcacacgca chrIII:3620860-3620940 1 8.66e-05 . cccacaca accaccacca chrIV:5535978-5536058 62 9.94e-05 TGTTGCGTGT CACACTCA TTAGTAGGCA chrV:53452-53532 12 1.12e-04 ctacatttct cactcaca cgtgtttcgc chrII:11537318-11537398 42 1.53e-04 CGCGCGCGAG CGCACACT GCACACCATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:14636905-14636985 1.2e-05 20_[+1]_52 chrX:2321889-2321969 1.2e-05 47_[+1]_25 chrII:11088315-11088395 1.2e-05 10_[+1]_62 chrI:1575678-1575758 1.2e-05 1_[+1]_71 chrX:15668245-15668325 1.2e-05 70_[+1]_2 chrIII:4626373-4626453 1.2e-05 14_[+1]_58 chrV:13869045-13869125 1.2e-05 44_[+1]_28 chrX:7234935-7235015 2.4e-05 15_[+1]_57 chrIV:11605093-11605173 2.4e-05 13_[+1]_59 chrX:9296754-9296834 2.4e-05 50_[+1]_22 chrII:11889551-11889631 2.4e-05 66_[+1]_6 chrX:2885505-2885585 2.4e-05 8_[+1]_64 chrII:6248634-6248714 3.7e-05 51_[+1]_21 chrX:12629528-12629608 3.7e-05 72_[+1] chrI:6283474-6283554 7.4e-05 20_[+1]_52 chrIII:13720512-13720592 7.4e-05 50_[+1]_22 chrV:13396558-13396638 7.4e-05 4_[+1]_68 chrI:4175880-4175960 7.4e-05 67_[+1]_5 chrX:15877148-15877228 7.4e-05 24_[+1]_48 chrIII:3620860-3620940 8.7e-05 [+1]_72 chrIV:5535978-5536058 9.9e-05 61_[+1]_11 chrV:53452-53532 0.00011 11_[+1]_61 chrII:11537318-11537398 0.00015 41_[+1]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACACACA width=8 seqs=23 chrX:14636905-14636985 ( 21) CACACACA 1 chrX:2321889-2321969 ( 48) CACACACA 1 chrII:11088315-11088395 ( 11) CACACACA 1 chrI:1575678-1575758 ( 2) CACACACA 1 chrX:15668245-15668325 ( 71) CACACACA 1 chrIII:4626373-4626453 ( 15) CACACACA 1 chrV:13869045-13869125 ( 45) CACACACA 1 chrX:7234935-7235015 ( 16) CGCACACA 1 chrIV:11605093-11605173 ( 14) CGCACACA 1 chrX:9296754-9296834 ( 51) CGCACACA 1 chrII:11889551-11889631 ( 67) CGCACACA 1 chrX:2885505-2885585 ( 9) CGCACACA 1 chrII:6248634-6248714 ( 52) CTCACACA 1 chrX:12629528-12629608 ( 73) CTCACACA 1 chrI:6283474-6283554 ( 21) CACACGCA 1 chrIII:13720512-13720592 ( 51) CACACATA 1 chrV:13396558-13396638 ( 5) CACACATA 1 chrI:4175880-4175960 ( 68) CACACACT 1 chrX:15877148-15877228 ( 25) CACACGCA 1 chrIII:3620860-3620940 ( 1) CCCACACA 1 chrIV:5535978-5536058 ( 62) CACACTCA 1 chrV:53452-53532 ( 12) CACTCACA 1 chrII:11537318-11537398 ( 42) CGCACACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.5229 E= 3.7e-001 -1117 200 -1117 -1117 138 -252 2 -157 -1117 200 -1117 -1117 203 -1117 -1117 -257 -1117 200 -1117 -1117 189 -1117 -156 -257 -1117 187 -1117 -157 196 -1117 -1117 -157 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 3.7e-001 0.000000 1.000000 0.000000 0.000000 0.608696 0.043478 0.260870 0.086957 0.000000 1.000000 0.000000 0.000000 0.956522 0.000000 0.000000 0.043478 0.000000 1.000000 0.000000 0.000000 0.869565 0.000000 0.086957 0.043478 0.000000 0.913043 0.000000 0.086957 0.913043 0.000000 0.000000 0.086957 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACACACA MEME-1 regular expression -------------------------------------------------------------------------------- C[AG]CACACA -------------------------------------------------------------------------------- Time 5.08 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCGCGCA MEME-2 width = 8 sites = 8 llr = 89 E-value = 4.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCGCGCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::a pos.-specific C a:a:a:a: probability G :a:a:a:: matrix T :::::::: bits 2.1 * * * ** 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.0 ******** (16.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGCGCGCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:3916793-3916873 40 1.53e-05 GCAAACACTG CGCGCGCA GCTTGCAAGT chrII:7708749-7708829 6 1.53e-05 CAATG CGCGCGCA CGGTTTTTGC chrI:11092168-11092248 60 1.53e-05 AGACAATATA CGCGCGCA TACATTGTCT chrIII:3664370-3664450 52 1.53e-05 TGCAACACGC CGCGCGCA TTTCGCAACG chrIV:10817167-10817247 71 1.53e-05 CGACTCTGAA CGCGCGCA CG chrIV:1377766-1377846 50 1.53e-05 AACCAGTTTC CGCGCGCA CCGAACTCTG chrIV:11584150-11584230 40 1.53e-05 AGGAGAGGAG CGCGCGCA GTCAGCCAGC chrX:11662735-11662815 2 1.53e-05 T CGCGCGCA TATCATAACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:3916793-3916873 1.5e-05 39_[+2]_33 chrII:7708749-7708829 1.5e-05 5_[+2]_67 chrI:11092168-11092248 1.5e-05 59_[+2]_13 chrIII:3664370-3664450 1.5e-05 51_[+2]_21 chrIV:10817167-10817247 1.5e-05 70_[+2]_2 chrIV:1377766-1377846 1.5e-05 49_[+2]_23 chrIV:11584150-11584230 1.5e-05 39_[+2]_33 chrX:11662735-11662815 1.5e-05 1_[+2]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCGCGCA width=8 seqs=8 chrIII:3916793-3916873 ( 40) CGCGCGCA 1 chrII:7708749-7708829 ( 6) CGCGCGCA 1 chrI:11092168-11092248 ( 60) CGCGCGCA 1 chrIII:3664370-3664450 ( 52) CGCGCGCA 1 chrIV:10817167-10817247 ( 71) CGCGCGCA 1 chrIV:1377766-1377846 ( 50) CGCGCGCA 1 chrIV:11584150-11584230 ( 40) CGCGCGCA 1 chrX:11662735-11662815 ( 2) CGCGCGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.155 E= 4.3e+002 -965 200 -965 -965 -965 -965 196 -965 -965 200 -965 -965 -965 -965 196 -965 -965 200 -965 -965 -965 -965 196 -965 -965 200 -965 -965 209 -965 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 4.3e+002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGCA MEME-2 regular expression -------------------------------------------------------------------------------- CGCGCGCA -------------------------------------------------------------------------------- Time 9.98 secs. ******************************************************************************** ******************************************************************************** MOTIF TAGCTCAG MEME-3 width = 8 sites = 12 llr = 124 E-value = 1.5e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a::::a: pos.-specific C :::a:a:1 probability G ::a:2::9 matrix T a:::8::: bits 2.1 * * ** 1.9 **** ** 1.7 **** ** 1.5 **** *** Relative 1.3 ******** Entropy 1.0 ******** (15.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAGCTCAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:16551469-16551549 49 1.50e-05 TGTGCCTCGA TAGCTCAG TTGGGAGAGC chrX:14804841-14804921 43 1.50e-05 CACGGGGGTA TAGCTCAG TGGCAGAGCA chrII:6565197-6565277 58 1.50e-05 CTGGCCTCCT TAGCTCAG TTGGTAGAGC chrIII:535347-535427 42 1.50e-05 GTGCCGTCGA TAGCTCAG TTGGTAGAGC chrX:4789131-4789211 8 1.50e-05 GCCTCCT TAGCTCAG TTGGTAGAGC chrIII:8653055-8653135 7 1.50e-05 CCTCGA TAGCTCAG TTGGGAGAGC chrII:7001598-7001678 36 1.50e-05 GTTACCTGTG TAGCTCAG GGGTAGAGCG chrI:6136557-6136637 47 1.50e-05 GCCGCCCGGT TAGCTCAG TCGGTAGAGC chrX:8638893-8638973 36 1.50e-05 TGTGGGGGTA TAGCTCAG TGGCAGAGCA chrIII:8106652-8106732 8 3.00e-05 GCTTCCG TAGCGCAG TAGGCAGCGC chrIII:1122404-1122484 37 3.00e-05 TGTTGCCGTT TAGCGCAG GCGGGAGTGG chrX:14636905-14636985 60 4.45e-05 CAATGTAGTA TAGCTCAC TCTCACGCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16551469-16551549 1.5e-05 48_[+3]_24 chrX:14804841-14804921 1.5e-05 42_[+3]_30 chrII:6565197-6565277 1.5e-05 57_[+3]_15 chrIII:535347-535427 1.5e-05 41_[+3]_31 chrX:4789131-4789211 1.5e-05 7_[+3]_65 chrIII:8653055-8653135 1.5e-05 6_[+3]_66 chrII:7001598-7001678 1.5e-05 35_[+3]_37 chrI:6136557-6136637 1.5e-05 46_[+3]_26 chrX:8638893-8638973 1.5e-05 35_[+3]_37 chrIII:8106652-8106732 3e-05 7_[+3]_65 chrIII:1122404-1122484 3e-05 36_[+3]_36 chrX:14636905-14636985 4.5e-05 59_[+3]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAGCTCAG width=8 seqs=12 chrX:16551469-16551549 ( 49) TAGCTCAG 1 chrX:14804841-14804921 ( 43) TAGCTCAG 1 chrII:6565197-6565277 ( 58) TAGCTCAG 1 chrIII:535347-535427 ( 42) TAGCTCAG 1 chrX:4789131-4789211 ( 8) TAGCTCAG 1 chrIII:8653055-8653135 ( 7) TAGCTCAG 1 chrII:7001598-7001678 ( 36) TAGCTCAG 1 chrI:6136557-6136637 ( 47) TAGCTCAG 1 chrX:8638893-8638973 ( 36) TAGCTCAG 1 chrIII:8106652-8106732 ( 8) TAGCGCAG 1 chrIII:1122404-1122484 ( 37) TAGCGCAG 1 chrX:14636905-14636985 ( 60) TAGCTCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0174 E= 1.5e+001 -1023 -1023 -1023 195 209 -1023 -1023 -1023 -1023 -1023 196 -1023 -1023 200 -1023 -1023 -1023 -1023 -63 168 -1023 200 -1023 -1023 209 -1023 -1023 -1023 -1023 -158 183 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.5e+001 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.166667 0.833333 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.083333 0.916667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCTCAG MEME-3 regular expression -------------------------------------------------------------------------------- TAGCTCAG -------------------------------------------------------------------------------- Time 13.65 secs. ******************************************************************************** ******************************************************************************** MOTIF TSTGTGTG MEME-4 width = 8 sites = 40 llr = 313 E-value = 5.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TSTGTGTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::1:: pos.-specific C :3:22:2: probability G :6:819:a matrix T a1a:7:8: bits 2.1 1.9 * * * 1.7 * * * * 1.5 * * * * Relative 1.3 * ** *** Entropy 1.0 * ** *** (11.3 bits) 0.8 * ****** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTGTG consensus C C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTGTGTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:14689460-14689540 40 1.96e-05 TCTTCAGTTT TGTGTGTG TCAGCGGCAT chrV:10041586-10041666 31 1.96e-05 AAACACGATG TGTGTGTG GGGGACTGAA chrX:13945735-13945815 56 1.96e-05 GCATGCTATG TGTGTGTG TGTGTTTTTT chrV:6880750-6880830 15 1.96e-05 gggctctatg tgtgtgtg tgtgtgtgtg chrV:8785764-8785844 28 1.96e-05 CCACCCGCTC tgtgtgtg cctgtgtgcg chrX:5368307-5368387 46 1.96e-05 TTCACTAGTA TGTGTGTG CATTTATAGC chrX:2907473-2907553 23 1.96e-05 tctatgtatg tgtgtgtg cgactgtgcg chrX:2043320-2043400 6 1.96e-05 gtgtg tgtgtgtg GGATATATCG chrX:14229586-14229666 2 1.96e-05 g tgtgtgtg tgtgtgtgtg chrII:4130416-4130496 11 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chrI:14325480-14325560 41 1.96e-05 TGTATATTtg tgtgtgtg tgtgtgtgtg chrIII:445621-445701 42 1.96e-05 tgtgtgtgtg tgtgtgtg tgtgtgtgtg chrII:4942506-4942586 3 3.86e-05 TT TCTGTGTG CATTGAGAAT chrV:9219434-9219514 43 3.86e-05 TCTTCGTTTC TCTGTGTG ACCCGCTACA chrIV:16382416-16382496 45 3.86e-05 CCACCGACCT TCTGTGTG TTAGACAGAT chrI:7712358-7712438 34 3.86e-05 ACATGGATAA TCTGTGTG AGTGTATGTC chrIII:3916793-3916873 14 7.64e-05 AAACCTAAAG TGTGTGCG GCGACTTTGC chrX:3102987-3103067 25 7.64e-05 TCAAACCAAT TGTGTGCG GTGGCCAATG chrV:14496600-14496680 9 1.15e-04 ATAATTAA TGTGGGTG ACGGAAAAGA chrII:5577173-5577253 57 1.53e-04 CCGGCGATCT TCTGCGTG TAAAGCAGAC chrV:15515526-15515606 10 1.53e-04 CGGCGACCT TCTGCGTG TGAAGCAGAC chrI:9176250-9176330 40 1.53e-04 GGTTAGCAGA TTTGTGTG CCACCCACAC chrI:933477-933557 38 1.90e-04 ATTATCTTTC TCTCTGtg gcttcccact chrIV:14032759-14032839 36 1.90e-04 GCCCCCGGTC TCTCTGTG AAATACACAT chrX:5056378-5056458 13 1.90e-04 tatattttac tctCTGTG GCTTCACCGA chrX:6867877-6867957 60 2.26e-04 TTCAATTCCC TGTGTATG ACGACAACAT chrII:3999635-3999715 8 2.26e-04 CAATTTC TCTGGGTG TCTCCCCCTC chrV:14833432-14833512 54 2.26e-04 TTATTCTTGT TGTGTATG CTACTGCTTT chrII:7635443-7635523 60 2.45e-04 CGCGAGCGCC TGTGCGCG GCGCGGTACG chrV:18712174-18712254 8 2.45e-04 ATGAGAA TGTGCGCG GGATGGCTTC chrX:7457741-7457821 26 2.45e-04 AGTATGAGAG TGTGCGCG CGTGCGTGCT chrIII:10808049-10808129 42 3.00e-04 AGCGGTCGCC TGTCTGCG TTTCTTCACT chrX:8156099-8156179 31 3.00e-04 ATGCCTTTTC TTTGCGTG CCATCTCGTT chrM:5276-5356 55 3.00e-04 CTTATGCAAT TTTGCGTG CTATTCCAAA chrIII:3664370-3664450 23 3.36e-04 ACAGGGAGAA TGTGGGCG TGGCCTTCGC chrX:12086461-12086541 21 3.73e-04 GCAATGTCTA TCTGCGCG TCCCGGGTGG chrII:6248634-6248714 35 4.10e-04 GCGGAGTGGT TGTATGTG CTATTGTCGC chrIV:10817167-10817247 45 4.10e-04 GAGCGCGTAC TGTCGGTG GTGGCTGACG chrIII:8069422-8069502 13 4.83e-04 TGATTCTCGC TTTGGGTG CGAGAGGTCC chrV:19622486-19622566 5 7.82e-04 TGTG TCTCTATG GATGGGGCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTGTGTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:14689460-14689540 2e-05 39_[+4]_33 chrV:10041586-10041666 2e-05 30_[+4]_42 chrX:13945735-13945815 2e-05 55_[+4]_17 chrV:6880750-6880830 2e-05 14_[+4]_58 chrV:8785764-8785844 2e-05 27_[+4]_45 chrX:5368307-5368387 2e-05 45_[+4]_27 chrX:2907473-2907553 2e-05 22_[+4]_50 chrX:2043320-2043400 2e-05 5_[+4]_67 chrX:14229586-14229666 2e-05 1_[+4]_71 chrII:4130416-4130496 2e-05 10_[+4]_62 chrI:14325480-14325560 2e-05 40_[+4]_32 chrIII:445621-445701 2e-05 41_[+4]_31 chrII:4942506-4942586 3.9e-05 2_[+4]_70 chrV:9219434-9219514 3.9e-05 42_[+4]_30 chrIV:16382416-16382496 3.9e-05 44_[+4]_28 chrI:7712358-7712438 3.9e-05 33_[+4]_39 chrIII:3916793-3916873 7.6e-05 13_[+4]_59 chrX:3102987-3103067 7.6e-05 24_[+4]_48 chrV:14496600-14496680 0.00011 8_[+4]_64 chrII:5577173-5577253 0.00015 56_[+4]_16 chrV:15515526-15515606 0.00015 9_[+4]_63 chrI:9176250-9176330 0.00015 39_[+4]_33 chrI:933477-933557 0.00019 37_[+4]_35 chrIV:14032759-14032839 0.00019 35_[+4]_37 chrX:5056378-5056458 0.00019 12_[+4]_60 chrX:6867877-6867957 0.00023 59_[+4]_13 chrII:3999635-3999715 0.00023 7_[+4]_65 chrV:14833432-14833512 0.00023 53_[+4]_19 chrII:7635443-7635523 0.00024 59_[+4]_13 chrV:18712174-18712254 0.00024 7_[+4]_65 chrX:7457741-7457821 0.00024 25_[+4]_47 chrIII:10808049-10808129 0.0003 41_[+4]_31 chrX:8156099-8156179 0.0003 30_[+4]_42 chrM:5276-5356 0.0003 54_[+4]_18 chrIII:3664370-3664450 0.00034 22_[+4]_50 chrX:12086461-12086541 0.00037 20_[+4]_52 chrII:6248634-6248714 0.00041 34_[+4]_38 chrIV:10817167-10817247 0.00041 44_[+4]_28 chrIII:8069422-8069502 0.00048 12_[+4]_60 chrV:19622486-19622566 0.00078 4_[+4]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTGTGTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TSTGTGTG width=8 seqs=40 chrV:14689460-14689540 ( 40) TGTGTGTG 1 chrV:10041586-10041666 ( 31) TGTGTGTG 1 chrX:13945735-13945815 ( 56) TGTGTGTG 1 chrV:6880750-6880830 ( 15) TGTGTGTG 1 chrV:8785764-8785844 ( 28) TGTGTGTG 1 chrX:5368307-5368387 ( 46) TGTGTGTG 1 chrX:2907473-2907553 ( 23) TGTGTGTG 1 chrX:2043320-2043400 ( 6) TGTGTGTG 1 chrX:14229586-14229666 ( 2) TGTGTGTG 1 chrII:4130416-4130496 ( 11) TGTGTGTG 1 chrI:14325480-14325560 ( 41) TGTGTGTG 1 chrIII:445621-445701 ( 42) TGTGTGTG 1 chrII:4942506-4942586 ( 3) TCTGTGTG 1 chrV:9219434-9219514 ( 43) TCTGTGTG 1 chrIV:16382416-16382496 ( 45) TCTGTGTG 1 chrI:7712358-7712438 ( 34) TCTGTGTG 1 chrIII:3916793-3916873 ( 14) TGTGTGCG 1 chrX:3102987-3103067 ( 25) TGTGTGCG 1 chrV:14496600-14496680 ( 9) TGTGGGTG 1 chrII:5577173-5577253 ( 57) TCTGCGTG 1 chrV:15515526-15515606 ( 10) TCTGCGTG 1 chrI:9176250-9176330 ( 40) TTTGTGTG 1 chrI:933477-933557 ( 38) TCTCTGTG 1 chrIV:14032759-14032839 ( 36) TCTCTGTG 1 chrX:5056378-5056458 ( 13) TCTCTGTG 1 chrX:6867877-6867957 ( 60) TGTGTATG 1 chrII:3999635-3999715 ( 8) TCTGGGTG 1 chrV:14833432-14833512 ( 54) TGTGTATG 1 chrII:7635443-7635523 ( 60) TGTGCGCG 1 chrV:18712174-18712254 ( 8) TGTGCGCG 1 chrX:7457741-7457821 ( 26) TGTGCGCG 1 chrIII:10808049-10808129 ( 42) TGTCTGCG 1 chrX:8156099-8156179 ( 31) TTTGCGTG 1 chrM:5276-5356 ( 55) TTTGCGTG 1 chrIII:3664370-3664450 ( 23) TGTGGGCG 1 chrX:12086461-12086541 ( 21) TCTGCGCG 1 chrII:6248634-6248714 ( 35) TGTATGTG 1 chrIV:10817167-10817247 ( 45) TGTCGGTG 1 chrIII:8069422-8069502 ( 13) TTTGGGTG 1 chrV:19622486-19622566 ( 5) TCTCTATG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTGTGTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.77545 E= 5.8e+002 -1197 -1197 -1197 195 -1197 27 122 -137 -1197 -1197 -1197 195 -322 -73 168 -1197 -1197 -32 -104 138 -164 -1197 185 -1197 -1197 -32 -1197 163 -1197 -1197 196 -1197 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTGTGTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 40 E= 5.8e+002 0.000000 0.000000 0.000000 1.000000 0.000000 0.300000 0.600000 0.100000 0.000000 0.000000 0.000000 1.000000 0.025000 0.150000 0.825000 0.000000 0.000000 0.200000 0.125000 0.675000 0.075000 0.000000 0.925000 0.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSTGTGTG MEME-4 regular expression -------------------------------------------------------------------------------- T[GC]TG[TC]G[TC]G -------------------------------------------------------------------------------- Time 17.33 secs. ******************************************************************************** ******************************************************************************** MOTIF AGTGGTTA MEME-5 width = 8 sites = 11 llr = 116 E-value = 1.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-5 Description -------------------------------------------------------------------------------- Simplified A a::::::a pos.-specific C :::::::: probability G :a:a8::: matrix T ::a:2aa: bits 2.1 * * 1.9 **** *** 1.7 **** *** 1.5 **** *** Relative 1.3 ******** Entropy 1.0 ******** (15.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGTGGTTA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:4444215-4444295 60 1.61e-05 CATGTGGTCT AGTGGTTA GGATTCGTGG chrV:53452-53532 37 1.61e-05 cgcatggccg agtggtta gtacgtatgc chrX:8971540-8971620 73 1.61e-05 GTCATGTCCG AGTGGTTA chrI:11978715-11978795 62 1.61e-05 GTTGTGGTCT AGTGGTTA GGATTTATGG chrX:8646440-8646520 53 1.61e-05 CATGTGGTCT AGTGGTTA GGATTCGTGG chrII:11959337-11959417 51 1.61e-05 CCTGTGGTGT AGTGGTTA TCACGTCTGC chrIV:842807-842887 15 1.61e-05 CATGTGGTCT AGTGGTTA GGATTCGTGG chrIV:16388419-16388499 50 1.61e-05 TGCGTAGTAT AGTGGTTA GTACTCCACG chrII:5293420-5293500 45 1.61e-05 GTTGTGGTCT AGTGGTTA GGATTTATGG chrV:18720158-18720238 70 3.24e-05 TAAACTTCAG AGTGTTTA ATT chrM:11365-11445 14 3.24e-05 TAATAGTTTT AGTGTTTA CGCTAGTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:4444215-4444295 1.6e-05 59_[+5]_13 chrV:53452-53532 1.6e-05 36_[+5]_36 chrX:8971540-8971620 1.6e-05 72_[+5] chrI:11978715-11978795 1.6e-05 61_[+5]_11 chrX:8646440-8646520 1.6e-05 52_[+5]_20 chrII:11959337-11959417 1.6e-05 50_[+5]_22 chrIV:842807-842887 1.6e-05 14_[+5]_58 chrIV:16388419-16388499 1.6e-05 49_[+5]_23 chrII:5293420-5293500 1.6e-05 44_[+5]_28 chrV:18720158-18720238 3.2e-05 69_[+5]_3 chrM:11365-11445 3.2e-05 13_[+5]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGTGGTTA width=8 seqs=11 chrX:4444215-4444295 ( 60) AGTGGTTA 1 chrV:53452-53532 ( 37) AGTGGTTA 1 chrX:8971540-8971620 ( 73) AGTGGTTA 1 chrI:11978715-11978795 ( 62) AGTGGTTA 1 chrX:8646440-8646520 ( 53) AGTGGTTA 1 chrII:11959337-11959417 ( 51) AGTGGTTA 1 chrIV:842807-842887 ( 15) AGTGGTTA 1 chrIV:16388419-16388499 ( 50) AGTGGTTA 1 chrII:5293420-5293500 ( 45) AGTGGTTA 1 chrV:18720158-18720238 ( 70) AGTGTTTA 1 chrM:11365-11445 ( 14) AGTGTTTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2475 E= 1.1e+002 209 -1010 -1010 -1010 -1010 -1010 196 -1010 -1010 -1010 -1010 195 -1010 -1010 196 -1010 -1010 -1010 167 -51 -1010 -1010 -1010 195 -1010 -1010 -1010 195 209 -1010 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.1e+002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.818182 0.181818 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-5 regular expression -------------------------------------------------------------------------------- AGTGGTTA -------------------------------------------------------------------------------- Time 20.93 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:8501942-8502022 9.96e-01 80 chrM:165-245 9.55e-01 80 chrM:5276-5356 3.52e-01 80 chrM:4042-4122 9.72e-01 80 chrM:1836-1916 4.74e-01 80 chrII:6846867-6846947 9.68e-01 80 chrX:15347870-15347950 3.72e-02 80 chrX:3914433-3914513 9.82e-01 80 chrV:13869045-13869125 6.12e-02 [+1(1.15e-05)]_[+1(1.15e-05)]_\ [+1(1.15e-05)]_[+1(1.15e-05)]_[+1(1.15e-05)]_[+1(1.15e-05)]_32 chrIII:445621-445701 2.13e-01 29_[+4(1.96e-05)]_[+4(1.96e-05)]_\ [+4(1.96e-05)]_[+4(1.96e-05)]_[+4(1.96e-05)]_[+4(1.96e-05)]_3 chrV:19373493-19373573 7.86e-01 80 chrX:7224668-7224748 2.94e-01 80 chrM:10047-10127 7.90e-01 80 chrV:16622081-16622161 1.96e-01 80 chrV:14496600-14496680 1.29e-01 80 chrIV:1981107-1981187 1.44e-01 80 chrIII:3873562-3873642 5.10e-01 80 chrX:3969480-3969560 8.43e-01 80 chrIII:3600061-3600141 4.71e-01 80 chrI:11860628-11860708 8.54e-01 80 chrX:11662735-11662815 3.20e-03 1_[+2(1.53e-05)]_71 chrM:11365-11445 1.69e-01 13_[+5(3.24e-05)]_59 chrM:321-401 4.90e-01 80 chrX:2552276-2552356 4.34e-01 80 chrIV:11584150-11584230 4.21e-02 39_[+2(1.53e-05)]_33 chrII:10065544-10065624 8.89e-01 80 chrI:10788812-10788892 1.50e-01 80 chrIII:4626373-4626453 5.26e-02 [+1(1.15e-05)]_[+1(1.15e-05)]_\ [+1(1.15e-05)]_56 chrX:14649408-14649488 8.56e-01 80 chrM:2829-2909 7.72e-01 80 chrIV:1377766-1377846 1.25e-02 49_[+2(1.53e-05)]_23 chrI:14130260-14130340 7.34e-01 80 chrX:15668245-15668325 6.82e-02 68_[+1(1.15e-05)]_4 chrIII:11427853-11427933 7.71e-01 80 chrI:14325480-14325560 1.28e-01 38_[+4(1.96e-05)]_[+4(1.96e-05)]_\ [+4(1.96e-05)]_[+4(1.96e-05)]_10 chrII:4130416-4130496 4.06e-02 [+4(1.96e-05)]_[+4(1.96e-05)]_\ [+4(1.96e-05)]_[+4(1.96e-05)]_[+4(1.96e-05)]_40 chrIII:3499992-3500072 8.19e-01 80 chrV:18720158-18720238 1.47e-01 69_[+5(3.24e-05)]_3 chrX:16602613-16602693 7.92e-01 80 chrX:5821120-5821200 6.58e-01 80 chrIII:1212977-1213057 9.75e-01 80 chrX:9102319-9102399 6.83e-01 80 chrX:5056378-5056458 3.61e-01 80 chrV:19722994-19723074 9.37e-01 80 chrIV:16168908-16168988 8.94e-01 80 chrI:11609239-11609319 8.48e-02 80 chrI:2254283-2254363 5.44e-01 80 chrI:8499947-8500027 9.19e-01 80 chrM:7621-7701 9.65e-01 80 chrX:7457741-7457821 3.01e-01 80 chrX:2885505-2885585 5.53e-02 [+1(7.43e-05)]_[+1(2.42e-05)]_64 chrIV:3521964-3522044 6.39e-01 80 chrX:10591864-10591944 8.71e-01 80 chrI:11203500-11203580 7.54e-01 80 chrM:8249-8329 6.30e-01 80 chrX:8818151-8818231 8.40e-01 80 chrIV:1908616-1908696 9.12e-01 80 chrI:6154407-6154487 9.67e-01 80 chrIII:8069422-8069502 5.80e-01 80 chrM:961-1041 9.08e-01 80 chrII:5293420-5293500 1.90e-02 44_[+5(1.61e-05)]_28 chrX:3994576-3994656 9.67e-01 80 chrIII:11560688-11560768 6.50e-01 80 chrX:5354685-5354765 3.50e-01 80 chrIII:13225186-13225266 8.91e-01 80 chrII:7153140-7153220 9.20e-01 80 chrIV:2657492-2657572 4.67e-01 80 chrIV:13549552-13549632 8.58e-01 80 chrM:9040-9120 5.45e-01 80 chrX:15877148-15877228 2.50e-02 11_[+1(9.94e-05)]_5_[+1(7.43e-05)]_\ 2_[+1(7.43e-05)]_38 chrI:2809450-2809530 1.00e+00 80 chrI:9176250-9176330 9.29e-03 80 chrX:15273541-15273621 8.94e-01 80 chrI:4175880-4175960 2.12e-03 67_[+1(7.43e-05)]_5 chrI:7712358-7712438 1.04e-01 33_[+4(3.86e-05)]_39 chrX:3102987-3103067 2.79e-01 24_[+4(7.64e-05)]_48 chrIV:14032759-14032839 2.72e-01 80 chrII:14710091-14710171 9.57e-01 80 chrX:14504440-14504520 9.01e-01 80 chrX:14229586-14229666 2.14e-01 1_[+4(1.96e-05)]_[+4(1.96e-05)]_\ [+4(1.96e-05)]_[+4(1.96e-05)]_[+4(1.96e-05)]_[+4(1.96e-05)]_[+4(1.96e-05)]_\ [+4(1.96e-05)]_[+4(1.96e-05)]_7 chrM:7115-7195 9.94e-01 80 chrIV:16388419-16388499 4.12e-02 49_[+5(1.61e-05)]_23 chrIII:3620860-3620940 3.29e-02 [+1(8.66e-05)]_72 chrX:2043320-2043400 1.13e-02 1_[+4(1.96e-05)]_71 chrX:2907473-2907553 1.26e-01 20_[+4(1.96e-05)]_6_[+4(5.75e-05)]_\ 4_[+4(1.96e-05)]_[+4(1.96e-05)]_18 chrIV:10817167-10817247 3.23e-03 70_[+2(1.53e-05)]_2 chrX:5368307-5368387 7.55e-02 45_[+4(1.96e-05)]_27 chrX:3348035-3348115 4.55e-01 80 chrX:10597733-10597813 5.60e-02 80 chrV:3092517-3092597 7.58e-01 80 chrIII:10856995-10857075 6.77e-01 80 chrV:12510127-12510207 9.66e-01 80 chrI:5084740-5084820 8.91e-01 80 chrIV:9316200-9316280 9.99e-01 80 chrI:11090190-11090270 9.86e-01 80 chrIV:14576646-14576726 9.31e-01 80 chrIII:5769880-5769960 6.24e-01 80 chrX:2451198-2451278 6.91e-01 80 chrX:8638893-8638973 1.82e-02 35_[+3(1.50e-05)]_37 chrI:6136557-6136637 2.62e-02 46_[+3(1.50e-05)]_26 chrV:8785764-8785844 8.71e-02 27_[+4(1.96e-05)]_2_[+4(7.64e-05)]_\ 15_[+4(1.96e-05)]_12 chrV:18712174-18712254 2.21e-01 80 chrV:15515526-15515606 3.14e-01 80 chrX:8156099-8156179 6.03e-01 80 chrIII:11353556-11353636 8.85e-01 80 chrIII:1122404-1122484 1.99e-01 36_[+3(3.00e-05)]_36 chrII:9258219-9258299 6.93e-01 80 chrII:8131531-8131611 2.76e-01 80 chrII:7001598-7001678 2.17e-03 35_[+3(1.50e-05)]_37 chrX:6961346-6961426 8.53e-01 80 chrI:9268960-9269040 2.57e-01 80 chrIV:2802268-2802348 5.33e-01 80 chrX:5816437-5816517 7.43e-01 80 chrX:10589295-10589375 4.48e-01 80 chrII:13790907-13790987 8.60e-01 80 chrII:3567787-3567867 9.01e-01 80 chrII:8748126-8748206 4.05e-01 80 chrIII:12399898-12399978 7.93e-01 80 chrI:3842459-3842539 3.97e-01 80 chrM:7315-7395 2.34e-01 80 chrII:13985913-13985993 9.93e-01 80 chrII:11889551-11889631 5.19e-02 66_[+1(2.42e-05)]_6 chrIII:3664370-3664450 3.32e-03 51_[+2(1.53e-05)]_21 chrV:14876409-14876489 2.46e-01 80 chrV:4647976-4648056 9.80e-01 80 chrII:4585580-4585660 5.88e-01 80 chrX:9296754-9296834 2.10e-02 50_[+1(2.42e-05)]_22 chrIII:4666968-4667048 9.32e-01 80 chrX:8925601-8925681 9.56e-02 80 chrIV:842807-842887 9.63e-02 14_[+5(1.61e-05)]_58 chrIII:4010349-4010429 3.13e-01 80 chrIII:8653055-8653135 1.11e-01 6_[+3(1.50e-05)]_66 chrX:13143474-13143554 5.50e-01 80 chrIV:4454701-4454781 9.04e-01 80 chrX:12367706-12367786 9.57e-01 80 chrIII:9104227-9104307 9.72e-01 80 chrV:6880750-6880830 1.22e-01 12_[+4(1.96e-05)]_[+4(1.96e-05)]_52 chrII:1242528-1242608 2.65e-01 80 chrIII:10432235-10432315 6.35e-02 80 chrX:17609864-17609944 5.03e-01 80 chrI:11670272-11670352 7.71e-01 80 chrIV:16684379-16684459 9.96e-01 80 chrI:7084573-7084653 8.64e-01 80 chrX:13945735-13945815 3.20e-02 53_[+4(1.96e-05)]_19 chrII:7635443-7635523 4.41e-02 80 chrIII:11702221-11702301 8.53e-01 80 chrV:3587756-3587836 8.50e-02 80 chrM:3031-3111 9.67e-01 80 chrIV:11605093-11605173 1.70e-02 13_[+1(2.42e-05)]_59 chrX:10821343-10821423 4.34e-01 80 chrX:4789131-4789211 5.79e-02 7_[+3(1.50e-05)]_65 chrIV:6646035-6646115 2.59e-01 80 chrIII:13474611-13474691 9.21e-01 80 chrX:13584063-13584143 8.04e-01 80 chrI:2714005-2714085 4.91e-01 80 chrX:12629528-12629608 1.24e-02 72_[+1(3.69e-05)] chrX:5818397-5818477 8.68e-03 80 chrI:9051176-9051256 9.96e-01 80 chrI:1575678-1575758 2.54e-02 1_[+1(1.15e-05)]_71 chrV:14855766-14855846 5.98e-01 80 chrV:10041586-10041666 2.07e-01 28_[+4(1.96e-05)]_44 chrV:14792419-14792499 8.68e-01 80 chrX:16928289-16928369 5.86e-01 80 chrIII:6133472-6133552 2.14e-01 [+4(1.96e-05)]_[+4(1.96e-05)]_\ [+4(1.96e-05)]_[+4(1.96e-05)]_[+4(1.96e-05)]_[+4(1.96e-05)]_[+4(1.96e-05)]_\ [+4(1.96e-05)]_[+4(1.96e-05)]_[+4(1.96e-05)] chrII:11088315-11088395 7.19e-02 10_[+1(1.15e-05)]_62 chrIII:6805508-6805588 4.26e-01 80 chrV:19521536-19521616 2.45e-01 80 chrIII:7030542-7030622 8.65e-01 80 chrIII:535347-535427 8.27e-03 41_[+3(1.50e-05)]_31 chrX:2321889-2321969 3.99e-02 21_[+1(1.15e-05)]_[+1(1.15e-05)]_\ [+1(1.15e-05)]_[+1(1.15e-05)]_27 chrI:11092168-11092248 1.03e-02 59_[+2(1.53e-05)]_13 chrII:14635371-14635451 8.50e-01 80 chrX:7794475-7794555 5.64e-01 80 chrX:12086461-12086541 2.03e-01 80 chrII:5577173-5577253 2.51e-01 80 chrX:13415121-13415201 3.99e-01 80 chrI:13310334-13310414 2.32e-01 80 chrIII:8650392-8650472 3.96e-01 80 chrI:9605777-9605857 7.96e-01 80 chrIV:5535978-5536058 1.69e-01 61_[+1(9.94e-05)]_11 chrII:11959337-11959417 1.73e-02 50_[+5(1.61e-05)]_22 chrII:5772918-5772998 9.09e-01 80 chrX:10524638-10524718 2.01e-01 80 chrI:3873930-3874010 1.16e-01 80 chrV:19622486-19622566 6.62e-01 80 chrII:7708749-7708829 9.70e-04 5_[+2(1.53e-05)]_67 chrIV:11928534-11928614 8.04e-01 80 chrII:6565197-6565277 2.39e-03 57_[+3(1.50e-05)]_15 chrX:14115662-14115742 4.12e-01 80 chrIV:16382416-16382496 1.89e-01 44_[+4(3.86e-05)]_28 chrX:12347993-12348073 8.98e-02 80 chrM:6046-6126 7.55e-01 80 chrX:12407515-12407595 9.55e-01 80 chrIII:668462-668542 3.43e-01 80 chrIII:7659571-7659651 3.63e-01 80 chrX:6220130-6220210 7.35e-01 80 chrX:8646440-8646520 3.71e-02 52_[+5(1.61e-05)]_20 chrM:2192-2272 7.98e-01 80 chrM:9250-9330 7.88e-01 80 chrV:7231003-7231083 3.99e-02 80 chrV:9219434-9219514 1.38e-01 42_[+4(3.86e-05)]_30 chrX:7234935-7235015 1.71e-02 15_[+1(2.42e-05)]_57 chrV:14833432-14833512 4.16e-01 80 chrM:12451-12531 4.23e-01 80 chrIII:4281013-4281093 7.75e-01 80 chrV:13396558-13396638 1.53e-01 4_[+1(7.43e-05)]_68 chrII:11537318-11537398 5.17e-03 80 chrV:16699862-16699942 1.00e+00 80 chrIII:10808049-10808129 4.24e-01 80 chrIII:11093617-11093697 8.25e-01 80 chrII:3999635-3999715 1.85e-01 80 chrIV:5038941-5039021 7.59e-01 80 chrIII:13720512-13720592 1.04e-01 50_[+1(7.43e-05)]_22 chrX:9078314-9078394 4.41e-01 80 chrIII:1824676-1824756 3.00e-01 80 chrX:14804841-14804921 1.02e-01 42_[+3(1.50e-05)]_30 chrII:7810977-7811057 4.15e-01 80 chrII:4942506-4942586 8.45e-02 2_[+4(3.86e-05)]_70 chrV:14689460-14689540 4.16e-03 39_[+4(1.96e-05)]_33 chrX:16551469-16551549 3.91e-02 48_[+3(1.50e-05)]_24 chrIII:3916793-3916873 5.46e-04 13_[+4(7.64e-05)]_18_[+2(1.53e-05)]_\ 33 chrIII:4369414-4369494 8.93e-01 80 chrX:14636905-14636985 4.70e-04 20_[+1(1.15e-05)]_[+1(1.15e-05)]_\ [+1(1.15e-05)]_15_[+3(4.45e-05)]_13 chrM:4638-4718 5.73e-01 80 chrII:3439353-3439433 8.29e-01 80 chrIII:1601586-1601666 9.45e-01 80 chrIV:3232989-3233069 8.93e-01 80 chrI:933477-933557 4.33e-01 80 chrIV:1388235-1388315 8.75e-01 80 chrII:4238026-4238106 5.50e-01 80 chrI:6283474-6283554 7.93e-02 20_[+1(7.43e-05)]_52 chrI:10927508-10927588 9.31e-01 80 chrV:8235460-8235540 8.18e-01 80 chrIII:8106652-8106732 5.76e-02 7_[+3(3.00e-05)]_65 chrI:11978715-11978795 7.69e-02 61_[+5(1.61e-05)]_11 chrIII:7642187-7642267 6.58e-01 80 chrI:6280504-6280584 9.26e-01 80 chrX:8971540-8971620 6.77e-02 72_[+5(1.61e-05)] chrV:5284656-5284736 9.45e-01 80 chrV:12024282-12024362 5.53e-01 80 chrV:16553122-16553202 9.86e-01 80 chrV:53452-53532 3.59e-03 36_[+5(1.61e-05)]_36 chrIV:14794147-14794227 1.27e-01 80 chrII:6248634-6248714 1.55e-04 51_[+1(3.69e-05)]_21 chrV:11239347-11239427 5.11e-01 80 chrX:6867877-6867957 6.99e-02 80 chrX:5319401-5319481 6.21e-01 80 chrII:3521510-3521590 7.85e-01 80 chrX:4444215-4444295 1.17e-02 59_[+5(1.61e-05)]_13 chrIV:11310773-11310853 9.34e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n02.farnam.hpc.yale.internal ********************************************************************************