******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-43.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII:4444651-4444731 1.0000 80 chrIII:7593680-7593760 1.0000 80 chrV:18988158-18988238 1.0000 80 chrIII:4452903-4452983 1.0000 80 chrI:4613743-4613823 1.0000 80 chrII:13315303-13315383 1.0000 80 chrIII:4459346-4459426 1.0000 80 chrIV:2828648-2828728 1.0000 80 chrII:13414293-13414373 1.0000 80 chrIII:4448336-4448416 1.0000 80 chrIII:4451176-4451256 1.0000 80 chrI:13669675-13669755 1.0000 80 chrV:19965478-19965558 1.0000 80 chrIII:4454222-4454302 1.0000 80 chrV:18110434-18110514 1.0000 80 chrI:9944346-9944426 1.0000 80 chrX:1059699-1059779 1.0000 80 chrIII:5240143-5240223 1.0000 80 chrII:13417738-13417818 1.0000 80 chrI:6288861-6288941 1.0000 80 chrX:8401570-8401650 1.0000 80 chrM:11991-12071 1.0000 80 chrIV:10102249-10102329 1.0000 80 chrIII:4461451-4461531 1.0000 80 chrIV:12536535-12536615 1.0000 80 chrX:852933-853013 1.0000 80 chrII:13467670-13467750 1.0000 80 chrII:10163688-10163768 1.0000 80 chrIII:9853842-9853922 1.0000 80 chrI:649961-650041 1.0000 80 chrV:6478883-6478963 1.0000 80 chrI:14754759-14754839 1.0000 80 chrI:2827066-2827146 1.0000 80 chrV:19356901-19356981 1.0000 80 chrV:11337446-11337526 1.0000 80 chrIII:39700-39780 1.0000 80 chrIII:4456781-4456861 1.0000 80 chrIV:6646969-6647049 1.0000 80 chrX:5810485-5810565 1.0000 80 chrX:3310886-3310966 1.0000 80 chrIV:3055453-3055533 1.0000 80 chrI:8130161-8130241 1.0000 80 chrX:1005156-1005236 1.0000 80 chrIII:13329597-13329677 1.0000 80 chrIII:8058168-8058248 1.0000 80 chrII:10373759-10373839 1.0000 80 chrV:4193577-4193657 1.0000 80 chrIV:5978393-5978473 1.0000 80 chrI:2746112-2746192 1.0000 80 chrV:13364614-13364694 1.0000 80 chrIII:12832964-12833044 1.0000 80 chrIV:10867833-10867913 1.0000 80 chrIV:6985110-6985190 1.0000 80 chrIV:11868751-11868831 1.0000 80 chrIV:12217438-12217518 1.0000 80 chrII:6398824-6398904 1.0000 80 chrIII:10922665-10922745 1.0000 80 chrII:4909479-4909559 1.0000 80 chrX:2707614-2707694 1.0000 80 chrIV:1916398-1916478 1.0000 80 chrX:12688855-12688935 1.0000 80 chrX:6114587-6114667 1.0000 80 chrX:12083756-12083836 1.0000 80 chrI:7714710-7714790 1.0000 80 chrX:15118566-15118646 1.0000 80 chrV:978794-978874 1.0000 80 chrV:6684723-6684803 1.0000 80 chrIV:6656598-6656678 1.0000 80 chrIV:1906812-1906892 1.0000 80 chrIII:10183464-10183544 1.0000 80 chrII:6940041-6940121 1.0000 80 chrII:9574520-9574600 1.0000 80 chrI:14962331-14962411 1.0000 80 chrX:1996209-1996289 1.0000 80 chrI:651587-651667 1.0000 80 chrIII:423193-423273 1.0000 80 chrX:6211479-6211559 1.0000 80 chrI:800152-800232 1.0000 80 chrI:13042377-13042457 1.0000 80 chrX:16286460-16286540 1.0000 80 chrIV:5093617-5093697 1.0000 80 chrM:4379-4459 1.0000 80 chrX:9939849-9939929 1.0000 80 chrIII:1160707-1160787 1.0000 80 chrI:6287988-6288068 1.0000 80 chrI:3908172-3908252 1.0000 80 chrI:13608587-13608667 1.0000 80 chrV:15453057-15453137 1.0000 80 chrIV:175754-175834 1.0000 80 chrI:14523098-14523178 1.0000 80 chrI:130785-130865 1.0000 80 chrII:2832714-2832794 1.0000 80 chrIV:1896320-1896400 1.0000 80 chrX:14486696-14486776 1.0000 80 chrIV:3849147-3849227 1.0000 80 chrIV:2221703-2221783 1.0000 80 chrV:8592497-8592577 1.0000 80 chrM:3959-4039 1.0000 80 chrI:8783855-8783935 1.0000 80 chrIII:12340215-12340295 1.0000 80 chrV:8129902-8129982 1.0000 80 chrIV:9007036-9007116 1.0000 80 chrI:11091377-11091457 1.0000 80 chrX:6258585-6258665 1.0000 80 chrIV:16396921-16397001 1.0000 80 chrM:165-245 1.0000 80 chrII:6412042-6412122 1.0000 80 chrI:3333624-3333704 1.0000 80 chrV:8797065-8797145 1.0000 80 chrI:4775489-4775569 1.0000 80 chrIV:3521872-3521952 1.0000 80 chrV:4967352-4967432 1.0000 80 chrIII:4455100-4455180 1.0000 80 chrIII:7202417-7202497 1.0000 80 chrX:10925706-10925786 1.0000 80 chrV:6485248-6485328 1.0000 80 chrIII:11985992-11986072 1.0000 80 chrII:8223535-8223615 1.0000 80 chrI:4787992-4788072 1.0000 80 chrIV:5973452-5973532 1.0000 80 chrII:12990376-12990456 1.0000 80 chrII:4153630-4153710 1.0000 80 chrIII:8798404-8798484 1.0000 80 chrM:7665-7745 1.0000 80 chrII:6838444-6838524 1.0000 80 chrII:6934641-6934721 1.0000 80 chrIV:4623021-4623101 1.0000 80 chrIV:12282177-12282257 1.0000 80 chrIII:12616348-12616428 1.0000 80 chrI:9964792-9964872 1.0000 80 chrI:12056932-12057012 1.0000 80 chrM:5550-5630 1.0000 80 chrI:230549-230629 1.0000 80 chrII:10369773-10369853 1.0000 80 chrX:2043400-2043480 1.0000 80 chrII:10374999-10375079 1.0000 80 chrM:5351-5431 1.0000 80 chrII:14437280-14437360 1.0000 80 chrIII:3789845-3789925 1.0000 80 chrX:15347840-15347920 1.0000 80 chrII:5399334-5399414 1.0000 80 chrIV:14877024-14877104 1.0000 80 chrI:11186270-11186350 1.0000 80 chrII:11036894-11036974 1.0000 80 chrV:311621-311701 1.0000 80 chrI:11460644-11460724 1.0000 80 chrIII:6903245-6903325 1.0000 80 chrX:4759884-4759964 1.0000 80 chrV:6230968-6231048 1.0000 80 chrIV:5926875-5926955 1.0000 80 chrII:5418377-5418457 1.0000 80 chrI:13654901-13654981 1.0000 80 chrV:3449860-3449940 1.0000 80 chrIII:2913100-2913180 1.0000 80 chrI:11607042-11607122 1.0000 80 chrX:17369435-17369515 1.0000 80 chrIII:10657149-10657229 1.0000 80 chrX:2706231-2706311 1.0000 80 chrIII:12613799-12613879 1.0000 80 chrIII:9451113-9451193 1.0000 80 chrI:353385-353465 1.0000 80 chrV:20220868-20220948 1.0000 80 chrIII:4519528-4519608 1.0000 80 chrI:2020608-2020688 1.0000 80 chrIV:2193061-2193141 1.0000 80 chrV:9395340-9395420 1.0000 80 chrI:933474-933554 1.0000 80 chrM:9608-9688 1.0000 80 chrV:11700097-11700177 1.0000 80 chrII:10990774-10990854 1.0000 80 chrIII:3863853-3863933 1.0000 80 chrIV:12546109-12546189 1.0000 80 chrV:14792453-14792533 1.0000 80 chrIV:12544730-12544810 1.0000 80 chrIII:9854044-9854124 1.0000 80 chrX:10592040-10592120 1.0000 80 chrV:12039983-12040063 1.0000 80 chrI:15016334-15016414 1.0000 80 chrII:9075199-9075279 1.0000 80 chrII:15266267-15266347 1.0000 80 chrI:1256298-1256378 1.0000 80 chrX:2707822-2707902 1.0000 80 chrII:7814436-7814516 1.0000 80 chrX:4307568-4307648 1.0000 80 chrIV:5854480-5854560 1.0000 80 chrV:5960977-5961057 1.0000 80 chrX:16663296-16663376 1.0000 80 chrIII:6488950-6489030 1.0000 80 chrI:9571655-9571735 1.0000 80 chrX:11211494-11211574 1.0000 80 chrX:8398584-8398664 1.0000 80 chrII:4583082-4583162 1.0000 80 chrV:3587790-3587870 1.0000 80 chrV:13018365-13018445 1.0000 80 chrM:9406-9486 1.0000 80 chrIII:3569404-3569484 1.0000 80 chrIII:343907-343987 1.0000 80 chrIV:5164568-5164648 1.0000 80 chrIII:5906243-5906323 1.0000 80 chrX:10382875-10382955 1.0000 80 chrX:13146090-13146170 1.0000 80 chrI:4360624-4360704 1.0000 80 chrIV:9619053-9619133 1.0000 80 chrV:1577065-1577145 1.0000 80 chrM:10826-10906 1.0000 80 chrX:2044992-2045072 1.0000 80 chrIII:13293187-13293267 1.0000 80 chrX:14413709-14413789 1.0000 80 chrM:3702-3782 1.0000 80 chrII:11284700-11284780 1.0000 80 chrX:3914409-3914489 1.0000 80 chrV:18589669-18589749 1.0000 80 chrX:8603133-8603213 1.0000 80 chrIV:12678509-12678589 1.0000 80 chrV:11947337-11947417 1.0000 80 chrIII:5739972-5740052 1.0000 80 chrIII:9971544-9971624 1.0000 80 chrI:4511225-4511305 1.0000 80 chrIII:4542523-4542603 1.0000 80 chrV:10035681-10035761 1.0000 80 chrIII:85379-85459 1.0000 80 chrX:3318195-3318275 1.0000 80 chrIII:6279963-6280043 1.0000 80 chrI:13014272-13014352 1.0000 80 chrX:14321110-14321190 1.0000 80 chrIV:14013777-14013857 1.0000 80 chrIV:12193485-12193565 1.0000 80 chrIII:6431915-6431995 1.0000 80 chrI:14131980-14132060 1.0000 80 chrIV:2390581-2390661 1.0000 80 chrV:7820475-7820555 1.0000 80 chrV:4968353-4968433 1.0000 80 chrM:7325-7405 1.0000 80 chrX:11059764-11059844 1.0000 80 chrI:445604-445684 1.0000 80 chrII:15267498-15267578 1.0000 80 chrII:13845234-13845314 1.0000 80 chrIV:2061073-2061153 1.0000 80 chrIV:11605045-11605125 1.0000 80 chrIV:9316202-9316282 1.0000 80 chrIV:5964761-5964841 1.0000 80 chrIII:9965662-9965742 1.0000 80 chrII:3999602-3999682 1.0000 80 chrIV:10868033-10868113 1.0000 80 chrX:2713134-2713214 1.0000 80 chrX:8156169-8156249 1.0000 80 chrIII:5181151-5181231 1.0000 80 chrV:14139427-14139507 1.0000 80 chrX:5056379-5056459 1.0000 80 chrI:7942563-7942643 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ceh-43/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-43.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.299 C 0.194 G 0.196 T 0.311 Background letter frequencies (from file dataset with add-one prior applied): A 0.299 C 0.194 G 0.196 T 0.311 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TAATTANH MEME-1 width = 8 sites = 178 llr = 1104 E-value = 9.1e-060 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAATTANH MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1aa::822 pos.-specific C 2:::::34 probability G :::::221 matrix T 7::aa:33 bits 2.4 2.1 1.9 1.7 **** Relative 1.4 **** Entropy 1.2 ***** (9.0 bits) 0.9 ***** 0.7 ****** 0.5 ****** 0.2 ****** * 0.0 -------- Multilevel TAATTATC consensus C CT sequence GA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAATTANH MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:7942563-7942643 58 3.03e-05 TCGCACACCA TAATTACC TTTTCACCAC chrV:11947337-11947417 66 3.03e-05 CATAACCATA TAATTACC ATCCTCA chrI:9571655-9571735 61 3.03e-05 CACCACCCTT TAATTACC CTTTGTGACT chrI:353385-353465 29 3.03e-05 gaaaaatcga taattacc gGGAAAACCA chrIV:16396921-16397001 21 3.03e-05 AGGGGGGCAA TAATTACC GTAACATCTT chrIV:6656598-6656678 32 3.03e-05 TTCACAAACA TAATTACC CAATTATATT chrIII:13329597-13329677 2 3.03e-05 C TAATTACC GCAATTGACC chrI:2827066-2827146 65 3.03e-05 CCAGCAACCA TAATTACC ACCACCAT chrII:10163688-10163768 62 3.03e-05 CAAAACCCAA TAATTACC GTTTGGAGCA chrI:4613743-4613823 60 3.03e-05 TTAATTAGGC TAATTACC GGTAATTTAC chrIII:85379-85459 27 1.09e-04 GTATGCTAAA TAATTAGC AGACCATTTT chrV:18589669-18589749 21 1.09e-04 ATGCTAATGT TAATTAGC CACCCACCAC chrII:11284700-11284780 30 1.09e-04 CCAAACCATA TAATTATC TCAAGCATGT chrIV:5164568-5164648 63 1.09e-04 ATCTTTTAAC TAATTATC TTTTCACTTA chrI:15016334-15016414 10 1.09e-04 TCGATTAGA TAATTATC ATAAAGTTCA chrIV:12544730-12544810 37 1.09e-04 TATGACGCCA TAATTAGC GCACATACAG chrIII:12613799-12613879 42 1.09e-04 TACTGTGTGG TAATTAGC ATTACAAGTG chrI:11607042-11607122 51 1.09e-04 GGGATTAGTG TAATTAGC CACATTTATT chrIV:5926875-5926955 55 1.09e-04 GCAAACCCTC TAATTATC TGCCTAATTC chrX:4759884-4759964 56 1.09e-04 GTCCATCGGT TAATTATC TCAATGGACG chrII:10369773-10369853 39 1.09e-04 ATAATTGATT TAATTATC TCATCTCTTG chrI:11091377-11091457 52 1.09e-04 ATAAGGTCTC TAATTATC AATAATCCTG chrIV:9007036-9007116 7 1.09e-04 TTACGG TAATTATC GACCATCTTC chrIV:175754-175834 62 1.09e-04 GTAACAGTGG TAATTAGC TGAAGGTCTT chrI:651587-651667 5 1.09e-04 CCGA TAATTATC GTTTTTCCCG chrIV:1906812-1906892 46 1.09e-04 ATAATTATGG TAATTATC TCTACGGCTC chrIV:6985110-6985190 11 1.09e-04 GATGCATAGG TAATTAGC AGTGACTGCT chrIV:3055453-3055533 39 1.09e-04 TTTAGAACTG TAATTAGC CATGGAGCGC chrI:649961-650041 21 1.09e-04 ATTTTTCGGA TAATTATC GATTTTTTCC chrIII:9853842-9853922 73 1.09e-04 GTCTGCTAAA TAATTAGC chrIV:10102249-10102329 16 1.09e-04 CCCAACCAGC TAATTATC TTCGCTACAT chrII:13414293-13414373 57 1.09e-04 tggaaatcgg taattatc cattttttga chrV:12039983-12040063 30 1.28e-04 TGTTTGTGTT CAATTACC TGCGGGCGTT chrI:2020608-2020688 15 1.28e-04 ccaaaatcgg caattacc gaaactgcca chrI:11186270-11186350 65 1.28e-04 tcaggttgtc caattacc atttgatc chrII:6940041-6940121 2 1.28e-04 C CAATTACC ACTGAATTAG chrII:13315303-13315383 19 1.28e-04 taaaaaccgg caattacc gaaattgccg chrII:15267498-15267578 16 2.73e-04 CATAATTACT TAATTACT TTGCGCACTT chrIII:5739972-5740052 51 2.73e-04 taattaaata taattact tataattaaa chrIII:343907-343987 38 2.73e-04 GTGTAAGGTG CAATTATC GGGATGGAAA chrV:5960977-5961057 50 2.73e-04 actaaaggga taattact cagttttcgc chrI:933474-933554 29 2.73e-04 ATGGCTTCAC CAATTATC TTTCTCTCTG chrIII:4519528-4519608 44 2.73e-04 ATGATTACGG TAATTACT GATTTTTCCA chrIII:6903245-6903325 58 2.73e-04 AATGCAAAAT CAATTATC TCACAAATTA chrII:14437280-14437360 14 2.73e-04 TCCCCTTGAC CAATTATC TGGGGGCAGG chrI:9964792-9964872 7 2.73e-04 CATCAT TAATTACT CTCGAATTCC chrIV:3521872-3521952 27 2.73e-04 CTCGTCATCG CAATTAGC CACTGGTTTA chrI:4775489-4775569 47 2.73e-04 CAGCGCAAAT TAATTACT TGGTTTAGGC chrV:8797065-8797145 30 2.73e-04 ATATGTATGC CAATTATC CTGACAATCA chrV:8592497-8592577 33 2.73e-04 GTTTGTTTTT TAATTACT TCATATTAAT chrIV:3849147-3849227 8 2.73e-04 TGTGTCT CAATTAGC ATGGGGTACC chrIV:1896320-1896400 29 2.73e-04 CCTAGAAGGA CAATTAGC CCCCACTGAC chrV:978794-978874 51 2.73e-04 ATGACACCTC CAATTATC TGCTCACATT chrX:12688855-12688935 63 2.73e-04 TCACAAGTGA CAATTAGC CTAGTAAATC chrIII:12832964-12833044 45 2.73e-04 ttgtcggagt taattact tccggcaaat chrIV:6646969-6647049 7 2.73e-04 TCGAAG CAATTATC CTATCCAGAA chrX:8401570-8401650 58 2.73e-04 CAAAATCCTA TAATTACT CTATAAAGAC chrI:6288861-6288941 8 2.73e-04 AATTATT CAATTATC TGTGAAATGA chrII:13417738-13417818 52 2.73e-04 tgaaaatcgg caattatc gatattcttg chrIII:4451176-4451256 19 2.73e-04 TAATTTAGCC CAATTATC TTTCAGAGTG chrV:18988158-18988238 36 2.73e-04 ACTTTGTTAC TAATTAAC ACTAACAGGG chrIII:7593680-7593760 63 2.73e-04 aattaacgga taattaac ggataattaa chrII:3999602-3999682 16 4.46e-04 CGTGTTCATT TAATTACA CTCTCTTCTT chrIII:9965662-9965742 19 4.46e-04 gtgtgtttgC TAATTACA GTTACGTAAA chrV:7820475-7820555 11 4.46e-04 CACCGACACC TAATTATT GTTACCGTTC chrX:3318195-3318275 32 4.46e-04 GTTAGCCTAA TAATTAGT CTCTTCCCTA chrI:4511225-4511305 68 4.46e-04 TCGGCAGAAA TAATTATT TAATA chrII:15266267-15266347 65 4.46e-04 TGCATATCGT TAATTACA ATGGCGGG chrV:9395340-9395420 7 4.46e-04 GAATTG TAATTATT GCTATTAGTT chrIII:7202417-7202497 68 4.46e-04 ATCTAGGCGT TAATTATT TTTTA chrV:8129902-8129982 58 4.46e-04 GGTTTTTCAA TAATTATT TTATTTCCGT chrV:15453057-15453137 43 4.46e-04 aaaccatttc taattagt gcggagtcat chrIII:423193-423273 31 4.46e-04 TATGGTTTGC TAATTATT TAGCAGACCC chrV:6684723-6684803 39 4.46e-04 CTCTCTCGTG TAATTACA ATCCAATTCA chrIV:12217438-12217518 62 4.46e-04 AATTGGGTAT TAATTAGT TTTCAATTTA chrIV:5978393-5978473 51 4.46e-04 TGTCCGGAAA TAATTAGT TGTGAAAAAC chrIII:4461451-4461531 54 4.46e-04 ACTATATGCG TAATTAGT AGCACCTGTG chrIII:5240143-5240223 54 4.46e-04 attataatta taattatt attatGCTCT chrIV:12678509-12678589 17 6.18e-04 gcaattgccg taattgcc gaaaattcac chrI:4360624-4360704 12 6.18e-04 attttttttt taattgcc tgtttgccga chrX:16663296-16663376 44 6.18e-04 CCTCTTCCAG TAATTATA AGGAAGGAGA chrII:9075199-9075279 22 6.18e-04 GATGGAAGAG TAATTACG GAATTCCGAC chrIII:9854044-9854124 67 6.18e-04 GACACAAAAA TAATTATA AAAATA chrIII:9451113-9451193 39 6.18e-04 CAAGCGAGTC TAATTACG GTAGTGGTAG chrX:2706231-2706311 69 6.18e-04 GGGCAGGTTA TAATTATA CTGA chrIII:2913100-2913180 20 6.18e-04 GCAGATGGGT TAATTATA GGGACAGAAA chrI:13654901-13654981 26 6.18e-04 attaattaaa taattaga ttattgaata chrM:5351-5431 64 6.18e-04 CTTTAGTTAA TAATTATA CCTCTTGTT chrX:2043400-2043480 67 6.18e-04 AAAAGGCACC TAATTGCC AGGAAA chrIV:12282177-12282257 48 6.18e-04 ATTGCAATAG TAATTATA ATTATATATA chrIII:11985992-11986072 56 6.18e-04 gcaatttcgg taattgcc ggtttggtga chrX:10925706-10925786 6 6.18e-04 CAATA TAATTATA GTAATTAGAA chrX:16286460-16286540 36 6.18e-04 GGGTGGTTCA TAATTATA CAGGGTGGTC chrIII:8058168-8058248 21 6.18e-04 GGACACACAA TAATTAGA GGCCATGCTT chrV:19356901-19356981 41 6.18e-04 GCATTCCTTC TAATTAGA TCACCATCTT chrX:852933-853013 13 6.18e-04 TTATGAGACG TAATTACG GGGGGTGCGA chrV:18110434-18110514 34 6.18e-04 gcaaattcga taattgcc ggttttggaa chrII:8223535-8223615 50 6.78e-04 CGTTCCGCTT CAATTACT TGAATCGATA chrIII:9971544-9971624 1 8.10e-04 . TAATTATG TAATTATGTT chrM:3702-3782 6 8.10e-04 ATTTT TAATTATG GGCTAATGTG chrX:2044992-2045072 63 8.10e-04 ATGCATTGCG TAATTATG GCTCGTTGGG chrV:3449860-3449940 9 8.10e-04 ACATCCCT TAATTATG ACGTACCAAA chrI:6287988-6288068 69 8.10e-04 AGAGAGGCAA TAATTAGG AAGC chrIII:10183464-10183544 65 8.10e-04 TCGATTTTAT TAATTGTC CTCTTGAA chrX:1005156-1005236 40 8.10e-04 GCCAGCAGGG TAATTATG ATTCCGAATC chrX:3310886-3310966 67 8.10e-04 ATGAGCCTTC TAATTATG TGCCAT chrIII:4448336-4448416 21 8.10e-04 TGACGTGGCA TAATTATG TGTTAGTTGA chrX:4307568-4307648 16 9.92e-04 CGTTTAACTG CAATTATT TAATAATTAA chrI:1256298-1256378 68 9.92e-04 TTAATTTGAT TAATTAAT TGCAA chrV:14792453-14792533 71 9.92e-04 ACACAACATA TAATTAAT TG chrIII:3863853-3863933 46 9.92e-04 TTTAATTGAG CAATTAGT GCAATTTTTC chrM:9608-9688 39 9.92e-04 TTTTGAGGAT TAATTAAT AATTTTTTTC chrII:5418377-5418457 57 9.92e-04 TTAATAAATC TAATTAAT CCGTCAATTT chrII:11036894-11036974 29 9.92e-04 GAATGTAGAC CAATTATT AAATACTTCT chrIII:12616348-12616428 61 9.92e-04 TAATGAGCAA CAATTAGT CTATTGTCGA chrIV:5973452-5973532 39 9.92e-04 CAAACGAAAT TAATTAAT TTCGTTATTT chrI:3333624-3333704 70 9.92e-04 tgcttcgaat taattaat taa chrIII:12340215-12340295 18 9.92e-04 GTTGAATTGG CAATTATT TTAAAGGAAT chrI:14523098-14523178 63 9.92e-04 Aaattaaaat taattaat ttttaatgta chrIV:11868751-11868831 22 9.92e-04 TTTGCACCTG CAATTAGT CACCGTTTCC chrV:4193577-4193657 2 9.92e-04 T CAATTATT TTTGAAATCT chrX:5810485-5810565 31 9.92e-04 TTAATGAAGT CAATTATT AAGTCACTTT chrIII:4456781-4456861 61 9.92e-04 AGAAAACCGA CAATTATT CCTTCACATG chrII:13467670-13467750 36 9.92e-04 TCTTCTACTG TAATTAAT AACATATAGT chrX:14321110-14321190 29 1.17e-03 TGACCGCATA CAATTATA GTCCAAAGCT chrV:10035681-10035761 32 1.17e-03 CCAACTCATC CAATTATA ATCGGAAAAT chrII:7814436-7814516 19 1.17e-03 GTTTTCCTTT TAATTAAA ACAGGCGGCA chrII:5399334-5399414 14 1.17e-03 TGAAAAAATA TAATTAAA GAAAGCTGCA chrV:6485248-6485328 32 1.17e-03 CCGAAGGCTC TAATTAAA GGTGAGAGGG chrV:4967352-4967432 27 1.17e-03 GCTCACTAAA CAATTAGA GCGTACATGG chrX:1059699-1059779 31 1.17e-03 TTGGTCAGGG CAATTAGA ATATTGGTCA chrIV:10868033-10868113 52 1.36e-03 TAACGCTAGA TAATTGCT CTAAAAGCTC chrV:13018365-13018445 35 1.36e-03 CGGCTTTGCT TAATTGAC CGAGAGAAAC chrV:311621-311701 59 1.36e-03 CAAGGCATTT TAATTGAC GCGCAAAACA chrII:2832714-2832794 70 1.36e-03 ACTCTTTTAA TAATTGCT CTT chrI:7714710-7714790 25 1.36e-03 ATGGACCCAC TAATTAAG AGATACAATA chrX:10382875-10382955 33 1.44e-03 taagtaacaa caattaat ttggtaacag chrIII:3569404-3569484 11 1.44e-03 ATCTAAAAAA AAATTACC GCCATTTCCG chrI:130785-130865 51 1.44e-03 gtgGCGACAT AAATTACC GTATCCGCAT chrIII:6431915-6431995 68 1.55e-03 CAGCTAGAAA TAATTGTT TGGAA chrM:9406-9486 43 1.55e-03 TTAGTATATT TAATTGCA AATTAAATGG chrX:17369435-17369515 10 1.55e-03 ACCATTTGG TAATTGCA GTTAATTTAT chrIV:14877024-14877104 66 1.55e-03 CCAGGTGTTC TAATTGTT TCGAATT chrI:230549-230629 15 1.55e-03 TGGTGTAGAG TAATTGGT GTAGAGTAGG chrI:9944346-9944426 19 1.55e-03 ACTGCCGAGA TAATTGCA AGTTGAGAGG chrI:13669675-13669755 7 1.55e-03 CTCCAC TAATTGCA CACGGACAAA chrIV:2828648-2828728 70 1.55e-03 Aagagtaaaa taattggt aaa chrIII:5181151-5181231 52 1.67e-03 AAATTAAATT AAATTATC GTTTCCAGCT chrIV:2061073-2061153 47 1.67e-03 gcaaatcggc aaattagc ggaattgaaa chrI:13014272-13014352 67 1.67e-03 ccggaattga aaattagc tgcaaa chrX:14413709-14413789 48 1.67e-03 TATCTGAAAC CAATTAAA AGTTAAAGTT chrV:1577065-1577145 50 1.67e-03 aatttgattg caattaaa aatttgaaat chrIII:6488950-6489030 28 1.67e-03 AATACAATGA CAATTAAA AATTAGTGAA chrIII:10657149-10657229 17 1.67e-03 CTCCGAAGAC CAATTAAA ATTCAACCTC chrIV:4623021-4623101 62 1.67e-03 AAATTTAGAC CAATTAAA AAAATTTAAT chrIII:8798404-8798484 53 1.67e-03 AACCCAAAAA AAATTATC GTAAGTTTTT chrI:13608587-13608667 55 1.67e-03 TAGCCTCAAC CAATTAAA AAAACTTTAA chrII:4909479-4909559 23 1.67e-03 CAATTCCAAG CAATTAAA TTTTCAGGAC chrV:11700097-11700177 26 1.77e-03 AGGGCATCAA TAATTGGA TATCCCGAGG chrI:2746112-2746192 56 1.77e-03 GAATAAAAAA TAATTGGA GCACATGGGA chrI:14962331-14962411 16 1.84e-03 AGACTGCCTC CAATTAAG AGCTCTTCGA chrX:12083756-12083836 31 1.84e-03 GGGGTCCGGC CAATTGCT ATTCGCTTCC chrIV:12536535-12536615 52 1.84e-03 ACCAAACTGC CAATTAAG GTACTTTTGA chrII:10373759-10373839 72 1.89e-03 AGCAGACGTA TAATTGGG T chrII:6838444-6838524 27 2.01e-03 GGGACCGAAT TAATTGAT GTGACGAAGA chrI:13042377-13042457 16 2.01e-03 GTCATTAAAA TAATTGAT GATGTGCTTT chrI:12056932-12057012 65 2.22e-03 caaattgccg taattgaa aatttccg chrII:12990376-12990456 33 2.38e-03 TTGGGGGGTG AAATTAGT GGGCTCTTAG chrX:9939849-9939929 73 2.38e-03 CCTTCCTAGT AAATTACA chrI:800152-800232 52 2.38e-03 ttattattaG AAATTAGT TAGTATGAAT chrM:3959-4039 52 2.45e-03 ATAATTTTAT TAATTGAG AAACAACATT chrX:6211479-6211559 36 2.45e-03 AAGCAGTGGC TAATTGAG ATGTCAACCC chrM:11991-12071 59 2.45e-03 TATTTTATAA TAATTGAG ATAGATGTAG chrX:6258585-6258665 20 2.64e-03 TGGGTTAAGA AAATTATA TACTCAACAA chrX:8603133-8603213 54 2.80e-03 aaattgggga aaattagg gaaagtgggg chrII:6934641-6934721 43 2.80e-03 ATAAAAGTAA AAATTAGG TAAATTTTTT chrV:11337446-11337526 2 2.80e-03 C AAATTATG CAAGTTGCGA chrIV:2390581-2390661 68 2.87e-03 AATGAAAAAA AAATTAAT TTACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAATTANH MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:7942563-7942643 3e-05 57_[+1]_15 chrV:11947337-11947417 3e-05 65_[+1]_7 chrI:9571655-9571735 3e-05 60_[+1]_12 chrI:353385-353465 3e-05 28_[+1]_44 chrIV:16396921-16397001 3e-05 20_[+1]_52 chrIV:6656598-6656678 3e-05 31_[+1]_41 chrIII:13329597-13329677 3e-05 1_[+1]_71 chrI:2827066-2827146 3e-05 64_[+1]_8 chrII:10163688-10163768 3e-05 61_[+1]_11 chrI:4613743-4613823 3e-05 59_[+1]_13 chrIII:85379-85459 0.00011 26_[+1]_46 chrV:18589669-18589749 0.00011 20_[+1]_52 chrII:11284700-11284780 0.00011 29_[+1]_43 chrIV:5164568-5164648 0.00011 62_[+1]_10 chrI:15016334-15016414 0.00011 9_[+1]_63 chrIV:12544730-12544810 0.00011 36_[+1]_36 chrIII:12613799-12613879 0.00011 41_[+1]_31 chrI:11607042-11607122 0.00011 50_[+1]_22 chrIV:5926875-5926955 0.00011 54_[+1]_18 chrX:4759884-4759964 0.00011 55_[+1]_17 chrII:10369773-10369853 0.00011 38_[+1]_34 chrI:11091377-11091457 0.00011 51_[+1]_21 chrIV:9007036-9007116 0.00011 6_[+1]_66 chrIV:175754-175834 0.00011 61_[+1]_11 chrI:651587-651667 0.00011 4_[+1]_68 chrIV:1906812-1906892 0.00011 45_[+1]_27 chrIV:6985110-6985190 0.00011 10_[+1]_62 chrIV:3055453-3055533 0.00011 38_[+1]_34 chrI:649961-650041 0.00011 20_[+1]_52 chrIII:9853842-9853922 0.00011 72_[+1] chrIV:10102249-10102329 0.00011 15_[+1]_57 chrII:13414293-13414373 0.00011 56_[+1]_16 chrV:12039983-12040063 0.00013 29_[+1]_43 chrI:2020608-2020688 0.00013 14_[+1]_58 chrI:11186270-11186350 0.00013 64_[+1]_8 chrII:6940041-6940121 0.00013 1_[+1]_71 chrII:13315303-13315383 0.00013 18_[+1]_54 chrII:15267498-15267578 0.00027 15_[+1]_57 chrIII:5739972-5740052 0.00027 50_[+1]_22 chrIII:343907-343987 0.00027 37_[+1]_35 chrV:5960977-5961057 0.00027 49_[+1]_23 chrI:933474-933554 0.00027 28_[+1]_44 chrIII:4519528-4519608 0.00027 43_[+1]_29 chrIII:6903245-6903325 0.00027 57_[+1]_15 chrII:14437280-14437360 0.00027 13_[+1]_59 chrI:9964792-9964872 0.00027 6_[+1]_66 chrIV:3521872-3521952 0.00027 26_[+1]_46 chrI:4775489-4775569 0.00027 46_[+1]_26 chrV:8797065-8797145 0.00027 29_[+1]_43 chrV:8592497-8592577 0.00027 32_[+1]_40 chrIV:3849147-3849227 0.00027 7_[+1]_65 chrIV:1896320-1896400 0.00027 28_[+1]_44 chrV:978794-978874 0.00027 50_[+1]_22 chrX:12688855-12688935 0.00027 62_[+1]_10 chrIII:12832964-12833044 0.00027 44_[+1]_28 chrIV:6646969-6647049 0.00027 6_[+1]_66 chrX:8401570-8401650 0.00027 57_[+1]_15 chrI:6288861-6288941 0.00027 7_[+1]_65 chrII:13417738-13417818 0.00027 51_[+1]_21 chrIII:4451176-4451256 0.00027 18_[+1]_54 chrV:18988158-18988238 0.00027 35_[+1]_37 chrIII:7593680-7593760 0.00027 62_[+1]_10 chrII:3999602-3999682 0.00045 15_[+1]_57 chrIII:9965662-9965742 0.00045 18_[+1]_54 chrV:7820475-7820555 0.00045 10_[+1]_62 chrX:3318195-3318275 0.00045 31_[+1]_41 chrI:4511225-4511305 0.00045 67_[+1]_5 chrII:15266267-15266347 0.00045 64_[+1]_8 chrV:9395340-9395420 0.00045 6_[+1]_66 chrIII:7202417-7202497 0.00045 67_[+1]_5 chrV:8129902-8129982 0.00045 57_[+1]_15 chrV:15453057-15453137 0.00045 42_[+1]_30 chrIII:423193-423273 0.00045 30_[+1]_42 chrV:6684723-6684803 0.00045 38_[+1]_34 chrIV:12217438-12217518 0.00045 61_[+1]_11 chrIV:5978393-5978473 0.00045 50_[+1]_22 chrIII:4461451-4461531 0.00045 53_[+1]_19 chrIII:5240143-5240223 0.00045 53_[+1]_19 chrIV:12678509-12678589 0.00062 16_[+1]_56 chrI:4360624-4360704 0.00062 11_[+1]_61 chrX:16663296-16663376 0.00062 43_[+1]_29 chrII:9075199-9075279 0.00062 21_[+1]_51 chrIII:9854044-9854124 0.00062 66_[+1]_6 chrIII:9451113-9451193 0.00062 38_[+1]_34 chrX:2706231-2706311 0.00062 68_[+1]_4 chrIII:2913100-2913180 0.00062 19_[+1]_53 chrI:13654901-13654981 0.00062 25_[+1]_47 chrM:5351-5431 0.00062 63_[+1]_9 chrX:2043400-2043480 0.00062 66_[+1]_6 chrIV:12282177-12282257 0.00062 47_[+1]_25 chrIII:11985992-11986072 0.00062 55_[+1]_17 chrX:10925706-10925786 0.00062 5_[+1]_67 chrX:16286460-16286540 0.00062 35_[+1]_37 chrIII:8058168-8058248 0.00062 20_[+1]_52 chrV:19356901-19356981 0.00062 40_[+1]_32 chrX:852933-853013 0.00062 12_[+1]_60 chrV:18110434-18110514 0.00062 33_[+1]_39 chrII:8223535-8223615 0.00068 49_[+1]_23 chrIII:9971544-9971624 0.00081 [+1]_72 chrM:3702-3782 0.00081 5_[+1]_67 chrX:2044992-2045072 0.00081 62_[+1]_10 chrV:3449860-3449940 0.00081 8_[+1]_64 chrI:6287988-6288068 0.00081 68_[+1]_4 chrIII:10183464-10183544 0.00081 64_[+1]_8 chrX:1005156-1005236 0.00081 39_[+1]_33 chrX:3310886-3310966 0.00081 66_[+1]_6 chrIII:4448336-4448416 0.00081 20_[+1]_52 chrX:4307568-4307648 0.00099 15_[+1]_57 chrI:1256298-1256378 0.00099 67_[+1]_5 chrV:14792453-14792533 0.00099 70_[+1]_2 chrIII:3863853-3863933 0.00099 45_[+1]_27 chrM:9608-9688 0.00099 38_[+1]_34 chrII:5418377-5418457 0.00099 56_[+1]_16 chrII:11036894-11036974 0.00099 28_[+1]_44 chrIII:12616348-12616428 0.00099 60_[+1]_12 chrIV:5973452-5973532 0.00099 38_[+1]_34 chrI:3333624-3333704 0.00099 69_[+1]_3 chrIII:12340215-12340295 0.00099 17_[+1]_55 chrI:14523098-14523178 0.00099 62_[+1]_10 chrIV:11868751-11868831 0.00099 21_[+1]_51 chrV:4193577-4193657 0.00099 1_[+1]_71 chrX:5810485-5810565 0.00099 30_[+1]_42 chrIII:4456781-4456861 0.00099 60_[+1]_12 chrII:13467670-13467750 0.00099 35_[+1]_37 chrX:14321110-14321190 0.0012 28_[+1]_44 chrV:10035681-10035761 0.0012 31_[+1]_41 chrII:7814436-7814516 0.0012 18_[+1]_54 chrII:5399334-5399414 0.0012 13_[+1]_59 chrV:6485248-6485328 0.0012 31_[+1]_41 chrV:4967352-4967432 0.0012 26_[+1]_46 chrX:1059699-1059779 0.0012 30_[+1]_42 chrIV:10868033-10868113 0.0014 51_[+1]_21 chrV:13018365-13018445 0.0014 34_[+1]_38 chrV:311621-311701 0.0014 58_[+1]_14 chrII:2832714-2832794 0.0014 69_[+1]_3 chrI:7714710-7714790 0.0014 24_[+1]_48 chrX:10382875-10382955 0.0014 32_[+1]_40 chrIII:3569404-3569484 0.0014 10_[+1]_62 chrI:130785-130865 0.0014 50_[+1]_22 chrIII:6431915-6431995 0.0016 67_[+1]_5 chrM:9406-9486 0.0016 42_[+1]_30 chrX:17369435-17369515 0.0016 9_[+1]_63 chrIV:14877024-14877104 0.0016 65_[+1]_7 chrI:230549-230629 0.0016 14_[+1]_58 chrI:9944346-9944426 0.0016 18_[+1]_54 chrI:13669675-13669755 0.0016 6_[+1]_66 chrIV:2828648-2828728 0.0016 69_[+1]_3 chrIII:5181151-5181231 0.0017 51_[+1]_21 chrIV:2061073-2061153 0.0017 46_[+1]_26 chrI:13014272-13014352 0.0017 66_[+1]_6 chrX:14413709-14413789 0.0017 47_[+1]_25 chrV:1577065-1577145 0.0017 49_[+1]_23 chrIII:6488950-6489030 0.0017 27_[+1]_45 chrIII:10657149-10657229 0.0017 16_[+1]_56 chrIV:4623021-4623101 0.0017 61_[+1]_11 chrIII:8798404-8798484 0.0017 52_[+1]_20 chrI:13608587-13608667 0.0017 54_[+1]_18 chrII:4909479-4909559 0.0017 22_[+1]_50 chrV:11700097-11700177 0.0018 25_[+1]_47 chrI:2746112-2746192 0.0018 55_[+1]_17 chrI:14962331-14962411 0.0018 15_[+1]_57 chrX:12083756-12083836 0.0018 30_[+1]_42 chrIV:12536535-12536615 0.0018 51_[+1]_21 chrII:10373759-10373839 0.0019 71_[+1]_1 chrII:6838444-6838524 0.002 26_[+1]_46 chrI:13042377-13042457 0.002 15_[+1]_57 chrI:12056932-12057012 0.0022 64_[+1]_8 chrII:12990376-12990456 0.0024 32_[+1]_40 chrX:9939849-9939929 0.0024 72_[+1] chrI:800152-800232 0.0024 51_[+1]_21 chrM:3959-4039 0.0024 51_[+1]_21 chrX:6211479-6211559 0.0024 35_[+1]_37 chrM:11991-12071 0.0024 58_[+1]_14 chrX:6258585-6258665 0.0026 19_[+1]_53 chrX:8603133-8603213 0.0028 53_[+1]_19 chrII:6934641-6934721 0.0028 42_[+1]_30 chrV:11337446-11337526 0.0028 1_[+1]_71 chrIV:2390581-2390661 0.0029 67_[+1]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAATTANH MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAATTANH width=8 seqs=178 chrI:7942563-7942643 ( 58) TAATTACC 1 chrV:11947337-11947417 ( 66) TAATTACC 1 chrI:9571655-9571735 ( 61) TAATTACC 1 chrI:353385-353465 ( 29) TAATTACC 1 chrIV:16396921-16397001 ( 21) TAATTACC 1 chrIV:6656598-6656678 ( 32) TAATTACC 1 chrIII:13329597-13329677 ( 2) TAATTACC 1 chrI:2827066-2827146 ( 65) TAATTACC 1 chrII:10163688-10163768 ( 62) TAATTACC 1 chrI:4613743-4613823 ( 60) TAATTACC 1 chrIII:85379-85459 ( 27) TAATTAGC 1 chrV:18589669-18589749 ( 21) TAATTAGC 1 chrII:11284700-11284780 ( 30) TAATTATC 1 chrIV:5164568-5164648 ( 63) TAATTATC 1 chrI:15016334-15016414 ( 10) TAATTATC 1 chrIV:12544730-12544810 ( 37) TAATTAGC 1 chrIII:12613799-12613879 ( 42) TAATTAGC 1 chrI:11607042-11607122 ( 51) TAATTAGC 1 chrIV:5926875-5926955 ( 55) TAATTATC 1 chrX:4759884-4759964 ( 56) TAATTATC 1 chrII:10369773-10369853 ( 39) TAATTATC 1 chrI:11091377-11091457 ( 52) TAATTATC 1 chrIV:9007036-9007116 ( 7) TAATTATC 1 chrIV:175754-175834 ( 62) TAATTAGC 1 chrI:651587-651667 ( 5) TAATTATC 1 chrIV:1906812-1906892 ( 46) TAATTATC 1 chrIV:6985110-6985190 ( 11) TAATTAGC 1 chrIV:3055453-3055533 ( 39) TAATTAGC 1 chrI:649961-650041 ( 21) TAATTATC 1 chrIII:9853842-9853922 ( 73) TAATTAGC 1 chrIV:10102249-10102329 ( 16) TAATTATC 1 chrII:13414293-13414373 ( 57) TAATTATC 1 chrV:12039983-12040063 ( 30) CAATTACC 1 chrI:2020608-2020688 ( 15) CAATTACC 1 chrI:11186270-11186350 ( 65) CAATTACC 1 chrII:6940041-6940121 ( 2) CAATTACC 1 chrII:13315303-13315383 ( 19) CAATTACC 1 chrII:15267498-15267578 ( 16) TAATTACT 1 chrIII:5739972-5740052 ( 51) TAATTACT 1 chrIII:343907-343987 ( 38) CAATTATC 1 chrV:5960977-5961057 ( 50) TAATTACT 1 chrI:933474-933554 ( 29) CAATTATC 1 chrIII:4519528-4519608 ( 44) TAATTACT 1 chrIII:6903245-6903325 ( 58) CAATTATC 1 chrII:14437280-14437360 ( 14) CAATTATC 1 chrI:9964792-9964872 ( 7) TAATTACT 1 chrIV:3521872-3521952 ( 27) CAATTAGC 1 chrI:4775489-4775569 ( 47) TAATTACT 1 chrV:8797065-8797145 ( 30) CAATTATC 1 chrV:8592497-8592577 ( 33) TAATTACT 1 chrIV:3849147-3849227 ( 8) CAATTAGC 1 chrIV:1896320-1896400 ( 29) CAATTAGC 1 chrV:978794-978874 ( 51) CAATTATC 1 chrX:12688855-12688935 ( 63) CAATTAGC 1 chrIII:12832964-12833044 ( 45) TAATTACT 1 chrIV:6646969-6647049 ( 7) CAATTATC 1 chrX:8401570-8401650 ( 58) TAATTACT 1 chrI:6288861-6288941 ( 8) CAATTATC 1 chrII:13417738-13417818 ( 52) CAATTATC 1 chrIII:4451176-4451256 ( 19) CAATTATC 1 chrV:18988158-18988238 ( 36) TAATTAAC 1 chrIII:7593680-7593760 ( 63) TAATTAAC 1 chrII:3999602-3999682 ( 16) TAATTACA 1 chrIII:9965662-9965742 ( 19) TAATTACA 1 chrV:7820475-7820555 ( 11) TAATTATT 1 chrX:3318195-3318275 ( 32) TAATTAGT 1 chrI:4511225-4511305 ( 68) TAATTATT 1 chrII:15266267-15266347 ( 65) TAATTACA 1 chrV:9395340-9395420 ( 7) TAATTATT 1 chrIII:7202417-7202497 ( 68) TAATTATT 1 chrV:8129902-8129982 ( 58) TAATTATT 1 chrV:15453057-15453137 ( 43) TAATTAGT 1 chrIII:423193-423273 ( 31) TAATTATT 1 chrV:6684723-6684803 ( 39) TAATTACA 1 chrIV:12217438-12217518 ( 62) TAATTAGT 1 chrIV:5978393-5978473 ( 51) TAATTAGT 1 chrIII:4461451-4461531 ( 54) TAATTAGT 1 chrIII:5240143-5240223 ( 54) TAATTATT 1 chrIV:12678509-12678589 ( 17) TAATTGCC 1 chrI:4360624-4360704 ( 12) TAATTGCC 1 chrX:16663296-16663376 ( 44) TAATTATA 1 chrII:9075199-9075279 ( 22) TAATTACG 1 chrIII:9854044-9854124 ( 67) TAATTATA 1 chrIII:9451113-9451193 ( 39) TAATTACG 1 chrX:2706231-2706311 ( 69) TAATTATA 1 chrIII:2913100-2913180 ( 20) TAATTATA 1 chrI:13654901-13654981 ( 26) TAATTAGA 1 chrM:5351-5431 ( 64) TAATTATA 1 chrX:2043400-2043480 ( 67) TAATTGCC 1 chrIV:12282177-12282257 ( 48) TAATTATA 1 chrIII:11985992-11986072 ( 56) TAATTGCC 1 chrX:10925706-10925786 ( 6) TAATTATA 1 chrX:16286460-16286540 ( 36) TAATTATA 1 chrIII:8058168-8058248 ( 21) TAATTAGA 1 chrV:19356901-19356981 ( 41) TAATTAGA 1 chrX:852933-853013 ( 13) TAATTACG 1 chrV:18110434-18110514 ( 34) TAATTGCC 1 chrII:8223535-8223615 ( 50) CAATTACT 1 chrIII:9971544-9971624 ( 1) TAATTATG 1 chrM:3702-3782 ( 6) TAATTATG 1 chrX:2044992-2045072 ( 63) TAATTATG 1 chrV:3449860-3449940 ( 9) TAATTATG 1 chrI:6287988-6288068 ( 69) TAATTAGG 1 chrIII:10183464-10183544 ( 65) TAATTGTC 1 chrX:1005156-1005236 ( 40) TAATTATG 1 chrX:3310886-3310966 ( 67) TAATTATG 1 chrIII:4448336-4448416 ( 21) TAATTATG 1 chrX:4307568-4307648 ( 16) CAATTATT 1 chrI:1256298-1256378 ( 68) TAATTAAT 1 chrV:14792453-14792533 ( 71) TAATTAAT 1 chrIII:3863853-3863933 ( 46) CAATTAGT 1 chrM:9608-9688 ( 39) TAATTAAT 1 chrII:5418377-5418457 ( 57) TAATTAAT 1 chrII:11036894-11036974 ( 29) CAATTATT 1 chrIII:12616348-12616428 ( 61) CAATTAGT 1 chrIV:5973452-5973532 ( 39) TAATTAAT 1 chrI:3333624-3333704 ( 70) TAATTAAT 1 chrIII:12340215-12340295 ( 18) CAATTATT 1 chrI:14523098-14523178 ( 63) TAATTAAT 1 chrIV:11868751-11868831 ( 22) CAATTAGT 1 chrV:4193577-4193657 ( 2) CAATTATT 1 chrX:5810485-5810565 ( 31) CAATTATT 1 chrIII:4456781-4456861 ( 61) CAATTATT 1 chrII:13467670-13467750 ( 36) TAATTAAT 1 chrX:14321110-14321190 ( 29) CAATTATA 1 chrV:10035681-10035761 ( 32) CAATTATA 1 chrII:7814436-7814516 ( 19) TAATTAAA 1 chrII:5399334-5399414 ( 14) TAATTAAA 1 chrV:6485248-6485328 ( 32) TAATTAAA 1 chrV:4967352-4967432 ( 27) CAATTAGA 1 chrX:1059699-1059779 ( 31) CAATTAGA 1 chrIV:10868033-10868113 ( 52) TAATTGCT 1 chrV:13018365-13018445 ( 35) TAATTGAC 1 chrV:311621-311701 ( 59) TAATTGAC 1 chrII:2832714-2832794 ( 70) TAATTGCT 1 chrI:7714710-7714790 ( 25) TAATTAAG 1 chrX:10382875-10382955 ( 33) CAATTAAT 1 chrIII:3569404-3569484 ( 11) AAATTACC 1 chrI:130785-130865 ( 51) AAATTACC 1 chrIII:6431915-6431995 ( 68) TAATTGTT 1 chrM:9406-9486 ( 43) TAATTGCA 1 chrX:17369435-17369515 ( 10) TAATTGCA 1 chrIV:14877024-14877104 ( 66) TAATTGTT 1 chrI:230549-230629 ( 15) TAATTGGT 1 chrI:9944346-9944426 ( 19) TAATTGCA 1 chrI:13669675-13669755 ( 7) TAATTGCA 1 chrIV:2828648-2828728 ( 70) TAATTGGT 1 chrIII:5181151-5181231 ( 52) AAATTATC 1 chrIV:2061073-2061153 ( 47) AAATTAGC 1 chrI:13014272-13014352 ( 67) AAATTAGC 1 chrX:14413709-14413789 ( 48) CAATTAAA 1 chrV:1577065-1577145 ( 50) CAATTAAA 1 chrIII:6488950-6489030 ( 28) CAATTAAA 1 chrIII:10657149-10657229 ( 17) CAATTAAA 1 chrIV:4623021-4623101 ( 62) CAATTAAA 1 chrIII:8798404-8798484 ( 53) AAATTATC 1 chrI:13608587-13608667 ( 55) CAATTAAA 1 chrII:4909479-4909559 ( 23) CAATTAAA 1 chrV:11700097-11700177 ( 26) TAATTGGA 1 chrI:2746112-2746192 ( 56) TAATTGGA 1 chrI:14962331-14962411 ( 16) CAATTAAG 1 chrX:12083756-12083836 ( 31) CAATTGCT 1 chrIV:12536535-12536615 ( 52) CAATTAAG 1 chrII:10373759-10373839 ( 72) TAATTGGG 1 chrII:6838444-6838524 ( 27) TAATTGAT 1 chrI:13042377-13042457 ( 16) TAATTGAT 1 chrI:12056932-12057012 ( 65) TAATTGAA 1 chrII:12990376-12990456 ( 33) AAATTAGT 1 chrX:9939849-9939929 ( 73) AAATTACA 1 chrI:800152-800232 ( 52) AAATTAGT 1 chrM:3959-4039 ( 52) TAATTGAG 1 chrX:6211479-6211559 ( 36) TAATTGAG 1 chrM:11991-12071 ( 59) TAATTGAG 1 chrX:6258585-6258665 ( 20) AAATTATA 1 chrX:8603133-8603213 ( 54) AAATTAGG 1 chrII:6934641-6934721 ( 43) AAATTAGG 1 chrV:11337446-11337526 ( 2) AAATTATG 1 chrIV:2390581-2390661 ( 68) AAATTAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAATTANH MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 7.70911 E= 9.1e-060 -193 35 -1412 112 174 -1412 -1412 -1412 174 -1412 -1412 -1412 -1412 -1412 -1412 169 -1412 -1412 -1412 169 150 -1412 -32 -1412 -69 44 12 12 -48 95 -73 -9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAATTANH MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 178 E= 9.1e-060 0.078652 0.247191 0.000000 0.674157 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.842697 0.000000 0.157303 0.000000 0.185393 0.264045 0.213483 0.337079 0.213483 0.376404 0.117978 0.292135 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAATTANH MEME-1 regular expression -------------------------------------------------------------------------------- [TC]AATTA[TCG][CTA] -------------------------------------------------------------------------------- Time 5.78 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCCHCYC MEME-2 width = 8 sites = 27 llr = 240 E-value = 1.2e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCCHCYC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :2::2::: pos.-specific C a87a2a69 probability G ::::1::1 matrix T ::3:4:4: bits 2.4 * * * 2.1 * * * 1.9 * * * 1.7 * * * * Relative 1.4 ** * * * Entropy 1.2 **** *** (12.8 bits) 0.9 **** *** 0.7 **** *** 0.5 **** *** 0.2 **** *** 0.0 -------- Multilevel CCCCTCCC consensus AT A T sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCHCYC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:4444651-4444731 3 3.22e-06 GT CCCCTCCC GACGcctttt chrX:16663296-16663376 66 5.22e-06 AGGAGAACCC CCCCCCCC CTTTCTC chrX:12083756-12083836 63 5.22e-06 TGCCCCCCCC CCCCCCCC ACTATTCACA chrIII:39700-39780 42 5.22e-06 TTAGTTAGCC CCCCCCCC CTCCATACAC chrIV:9316202-9316282 73 1.03e-05 TTGTCATCAT CCCCGCCC chrIII:4542523-4542603 67 1.03e-05 GCCGTTTTAG CCCCGCCC CTTGAA chrII:8223535-8223615 4 1.03e-05 CGT CCCCACCC AATCCTCCCG chrIII:4451176-4451256 57 1.03e-05 AACAGGGGGA CCCCGCCC TATATTGTAG chrII:3999602-3999682 53 1.55e-05 TGGGTGTCTC CCCCTCTC TCTGCGCATT chrIII:12613799-12613879 70 1.55e-05 GACAGAGGTC CCCCTCTC CCC chrIII:10922665-10922745 35 1.55e-05 TAACCTCTTC CCCCTCTC CCCCGAAGTC chrI:445604-445684 69 3.53e-05 AAGAAGAGCC CCCCACTC GGAT chrV:18589669-18589749 63 4.03e-05 GCGTCTCTCC CACCTCCC TACTCTCTCT chrIV:5854480-5854560 41 4.35e-05 TCCTTAATAA CCCCTCCG CCGTTTCTTC chrI:9571655-9571735 51 6.47e-05 CAATACTTGT CACCACCC TTTAATTACC chrI:14962331-14962411 53 6.47e-05 CATTGTTTAG CACCACCC AACTGTTGCC chrIV:1916398-1916478 26 6.47e-05 GGAAGACCAC CACCACCC CTATTGTTGT chrX:13146090-13146170 13 7.82e-05 GTTCCTCATA CCTCTCTC TTTTCTGATC chrII:11036894-11036974 69 7.82e-05 TAATTAAACC CCCCGCCG AAAT chrX:1996209-1996289 54 7.82e-05 CGACCTATAT CCTCTCTC TCCATCCGGC chrV:6684723-6684803 28 7.82e-05 AAACTAAATG CCTCTCTC GTGTAATTAC chrIII:4456781-4456861 18 7.82e-05 ACGtcttctc cctctctc tacctctctc chrIII:13329597-13329677 18 8.33e-05 CCGCAATTGA CCTCCCTC ATTGGGACTT chrII:10369773-10369853 57 1.31e-04 TCATCTCTTG CCTCTCCG TAGAATTATA chrX:4759884-4759964 34 1.49e-04 AATTATAACA CATCCCCC CGTGGTCCAT chrIV:1906812-1906892 21 1.49e-04 TTCCCCTTTC CATCCCCC GACTCAGATA chrIV:1896320-1896400 37 1.60e-04 GACAATTAGC CCCCACTG ACACTGGGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCHCYC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:4444651-4444731 3.2e-06 2_[+2]_70 chrX:16663296-16663376 5.2e-06 65_[+2]_7 chrX:12083756-12083836 5.2e-06 62_[+2]_10 chrIII:39700-39780 5.2e-06 41_[+2]_31 chrIV:9316202-9316282 1e-05 72_[+2] chrIII:4542523-4542603 1e-05 66_[+2]_6 chrII:8223535-8223615 1e-05 3_[+2]_69 chrIII:4451176-4451256 1e-05 56_[+2]_16 chrII:3999602-3999682 1.5e-05 52_[+2]_20 chrIII:12613799-12613879 1.5e-05 69_[+2]_3 chrIII:10922665-10922745 1.5e-05 34_[+2]_38 chrI:445604-445684 3.5e-05 68_[+2]_4 chrV:18589669-18589749 4e-05 62_[+2]_10 chrIV:5854480-5854560 4.4e-05 40_[+2]_32 chrI:9571655-9571735 6.5e-05 50_[+2]_22 chrI:14962331-14962411 6.5e-05 52_[+2]_20 chrIV:1916398-1916478 6.5e-05 25_[+2]_47 chrX:13146090-13146170 7.8e-05 12_[+2]_60 chrII:11036894-11036974 7.8e-05 68_[+2]_4 chrX:1996209-1996289 7.8e-05 53_[+2]_19 chrV:6684723-6684803 7.8e-05 27_[+2]_45 chrIII:4456781-4456861 7.8e-05 17_[+2]_55 chrIII:13329597-13329677 8.3e-05 17_[+2]_55 chrII:10369773-10369853 0.00013 56_[+2]_16 chrX:4759884-4759964 0.00015 33_[+2]_39 chrIV:1906812-1906892 0.00015 20_[+2]_52 chrIV:1896320-1896400 0.00016 36_[+2]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCHCYC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCCHCYC width=8 seqs=27 chrIII:4444651-4444731 ( 3) CCCCTCCC 1 chrX:16663296-16663376 ( 66) CCCCCCCC 1 chrX:12083756-12083836 ( 63) CCCCCCCC 1 chrIII:39700-39780 ( 42) CCCCCCCC 1 chrIV:9316202-9316282 ( 73) CCCCGCCC 1 chrIII:4542523-4542603 ( 67) CCCCGCCC 1 chrII:8223535-8223615 ( 4) CCCCACCC 1 chrIII:4451176-4451256 ( 57) CCCCGCCC 1 chrII:3999602-3999682 ( 53) CCCCTCTC 1 chrIII:12613799-12613879 ( 70) CCCCTCTC 1 chrIII:10922665-10922745 ( 35) CCCCTCTC 1 chrI:445604-445684 ( 69) CCCCACTC 1 chrV:18589669-18589749 ( 63) CACCTCCC 1 chrIV:5854480-5854560 ( 41) CCCCTCCG 1 chrI:9571655-9571735 ( 51) CACCACCC 1 chrI:14962331-14962411 ( 53) CACCACCC 1 chrIV:1916398-1916478 ( 26) CACCACCC 1 chrX:13146090-13146170 ( 13) CCTCTCTC 1 chrII:11036894-11036974 ( 69) CCCCGCCG 1 chrX:1996209-1996289 ( 54) CCTCTCTC 1 chrV:6684723-6684803 ( 28) CCTCTCTC 1 chrIII:4456781-4456861 ( 18) CCTCTCTC 1 chrIII:13329597-13329677 ( 18) CCTCCCTC 1 chrII:10369773-10369853 ( 57) CCTCTCCG 1 chrX:4759884-4759964 ( 34) CATCCCCC 1 chrIV:1906812-1906892 ( 21) CATCCCCC 1 chrIV:1896320-1896400 ( 37) CCCCACTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCHCYC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.3477 E= 1.2e-003 -1140 236 -1140 -1140 -43 200 -1140 -1140 -1140 186 -1140 -7 -1140 236 -1140 -1140 -43 19 -40 39 -1140 236 -1140 -1140 -1140 170 -1140 25 -1140 213 -40 -1140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCHCYC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 1.2e-003 0.000000 1.000000 0.000000 0.000000 0.222222 0.777778 0.000000 0.000000 0.000000 0.703704 0.000000 0.296296 0.000000 1.000000 0.000000 0.000000 0.222222 0.222222 0.148148 0.407407 0.000000 1.000000 0.000000 0.000000 0.000000 0.629630 0.000000 0.370370 0.000000 0.851852 0.148148 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCCHCYC MEME-2 regular expression -------------------------------------------------------------------------------- C[CA][CT]C[TAC]C[CT]C -------------------------------------------------------------------------------- Time 10.21 secs. ******************************************************************************** ******************************************************************************** MOTIF GGDGGGGG MEME-3 width = 8 sites = 26 llr = 236 E-value = 2.7e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGDGGGGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::2::12: pos.-specific C :::2:2:: probability G aa48a76a matrix T ::3:::2: bits 2.4 ** * 2.1 ** * * 1.9 ** * * 1.7 ** ** * Relative 1.4 ** ** * Entropy 1.2 ** *** * (13.1 bits) 0.9 ** *** * 0.7 ** ***** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGGGGGG consensus T CA sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGDGGGGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:20220868-20220948 34 2.18e-06 AATAATAGAG GGGGGGGG GAGGTTATAG chrII:10374999-10375079 50 2.18e-06 gggggggggg gggggggg ggggCACACC chrIV:3521872-3521952 72 2.18e-06 GGGAGAAAGC gggggggg g chrV:4193577-4193657 36 2.18e-06 ATTAAGTCAG GGGGGGGG GGGcgccaaa chrI:2827066-2827146 3 2.18e-06 GG GGGGGGGG GGCCCAGAGG chrIII:12613799-12613879 9 5.63e-06 GAAGACAG GGTGGGGG GGAACAGAGA chrIV:16396921-16397001 9 1.11e-05 GGGGAGTG GGAGGGGG GCAATAATTA chrII:2832714-2832794 52 1.11e-05 CCTCAATACA GGAGGGGG ACTCTTTTAA chrII:12990376-12990456 25 2.00e-05 GGCATGGCTT GGGGGGTG AAATTAGTGG chrX:2707822-2707902 61 2.35e-05 AATGGGATTG GGTGGCGG TTATGAATAG chrIV:5093617-5093697 5 2.35e-05 ATTA GGTGGCGG AGCCATGAGA chrII:6838444-6838524 57 2.87e-05 GCGCGGACGG GGTGGGAG TGTTGTACGT chrI:8783855-8783935 3 2.87e-05 TC GGTGGGAG TTATTAATGA chrIV:12536535-12536615 18 3.54e-05 TTTGGAGGTA GGAGGCGG CACGTTCAAA chrX:1005156-1005236 68 4.09e-05 GTTGTTGGTA GGTGGGTG TCGCA chrII:14437280-14437360 23 4.93e-05 CCAATTATCT GGGGGCAG GTAGAGTGAA chrX:4759884-4759964 69 5.47e-05 TTATCTCAAT GGACGGGG GATT chrV:6230968-6231048 41 6.67e-05 AAAAAGAGAA GGGGGAGG AAAATGGCCT chrIV:11605045-11605125 29 7.00e-05 TGGTTCTGGT GGGCGGAG TCTCCTTCCC chrV:3587790-3587870 2 7.00e-05 A GGGCGGAG TCGCGAGCGC chrV:13018365-13018445 58 7.87e-05 GAAACAATAT GGTGGCAG GAAGGACAGA chrX:10592040-10592120 26 9.27e-05 TGTGACCATT GGTGGCTG CTGTCGAGGT chrX:8156169-8156249 52 1.22e-04 ATAACCCAGA GGTCGGTG GATCGAAACC chrIII:12616348-12616428 21 1.22e-04 GTATTAGAAA GGAGGAGG AAGTTGGGTC chrIV:14877024-14877104 26 1.25e-04 AAAGCGATTT GGGGAGGG AAAAGTTATT chrI:11607042-11607122 24 1.50e-04 TATGGGGGTA GGACGGTG TAAAAGGAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGDGGGGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:20220868-20220948 2.2e-06 33_[+3]_39 chrII:10374999-10375079 2.2e-06 49_[+3]_23 chrIV:3521872-3521952 2.2e-06 71_[+3]_1 chrV:4193577-4193657 2.2e-06 35_[+3]_37 chrI:2827066-2827146 2.2e-06 2_[+3]_70 chrIII:12613799-12613879 5.6e-06 8_[+3]_64 chrIV:16396921-16397001 1.1e-05 8_[+3]_64 chrII:2832714-2832794 1.1e-05 51_[+3]_21 chrII:12990376-12990456 2e-05 24_[+3]_48 chrX:2707822-2707902 2.3e-05 60_[+3]_12 chrIV:5093617-5093697 2.3e-05 4_[+3]_68 chrII:6838444-6838524 2.9e-05 56_[+3]_16 chrI:8783855-8783935 2.9e-05 2_[+3]_70 chrIV:12536535-12536615 3.5e-05 17_[+3]_55 chrX:1005156-1005236 4.1e-05 67_[+3]_5 chrII:14437280-14437360 4.9e-05 22_[+3]_50 chrX:4759884-4759964 5.5e-05 68_[+3]_4 chrV:6230968-6231048 6.7e-05 40_[+3]_32 chrIV:11605045-11605125 7e-05 28_[+3]_44 chrV:3587790-3587870 7e-05 1_[+3]_71 chrV:13018365-13018445 7.9e-05 57_[+3]_15 chrX:10592040-10592120 9.3e-05 25_[+3]_47 chrX:8156169-8156249 0.00012 51_[+3]_21 chrIII:12616348-12616428 0.00012 20_[+3]_52 chrIV:14877024-14877104 0.00013 25_[+3]_47 chrI:11607042-11607122 0.00015 23_[+3]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGDGGGGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGDGGGGG width=8 seqs=26 chrV:20220868-20220948 ( 34) GGGGGGGG 1 chrII:10374999-10375079 ( 50) GGGGGGGG 1 chrIV:3521872-3521952 ( 72) GGGGGGGG 1 chrV:4193577-4193657 ( 36) GGGGGGGG 1 chrI:2827066-2827146 ( 3) GGGGGGGG 1 chrIII:12613799-12613879 ( 9) GGTGGGGG 1 chrIV:16396921-16397001 ( 9) GGAGGGGG 1 chrII:2832714-2832794 ( 52) GGAGGGGG 1 chrII:12990376-12990456 ( 25) GGGGGGTG 1 chrX:2707822-2707902 ( 61) GGTGGCGG 1 chrIV:5093617-5093697 ( 5) GGTGGCGG 1 chrII:6838444-6838524 ( 57) GGTGGGAG 1 chrI:8783855-8783935 ( 3) GGTGGGAG 1 chrIV:12536535-12536615 ( 18) GGAGGCGG 1 chrX:1005156-1005236 ( 68) GGTGGGTG 1 chrII:14437280-14437360 ( 23) GGGGGCAG 1 chrX:4759884-4759964 ( 69) GGACGGGG 1 chrV:6230968-6231048 ( 41) GGGGGAGG 1 chrIV:11605045-11605125 ( 29) GGGCGGAG 1 chrV:3587790-3587870 ( 2) GGGCGGAG 1 chrV:13018365-13018445 ( 58) GGTGGCAG 1 chrX:10592040-10592120 ( 26) GGTGGCTG 1 chrX:8156169-8156249 ( 52) GGTCGGTG 1 chrIII:12616348-12616428 ( 21) GGAGGAGG 1 chrIV:14877024-14877104 ( 26) GGGGAGGG 1 chrI:11607042-11607122 ( 24) GGACGGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGDGGGGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.3895 E= 2.7e-003 -1134 -1134 235 -1134 -1134 -1134 235 -1134 -37 -1134 111 15 -1134 -2 204 -1134 -295 -1134 229 -1134 -196 25 182 -1134 -37 -1134 156 -69 -1134 -1134 235 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGDGGGGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 2.7e-003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.230769 0.000000 0.423077 0.346154 0.000000 0.192308 0.807692 0.000000 0.038462 0.000000 0.961538 0.000000 0.076923 0.230769 0.692308 0.000000 0.230769 0.000000 0.576923 0.192308 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGDGGGGG MEME-3 regular expression -------------------------------------------------------------------------------- GG[GTA]GG[GC][GA]G -------------------------------------------------------------------------------- Time 13.59 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGCAAWT MEME-4 width = 8 sites = 27 llr = 244 E-value = 2.2e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGCAAWT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::1a95: pos.-specific C a::8:::: probability G :9a::::: matrix T :1:1:15a bits 2.4 * * 2.1 * * 1.9 *** 1.7 *** * * Relative 1.4 *** * * Entropy 1.2 ****** * (13.0 bits) 0.9 ****** * 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGGCAATT consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCAAWT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:2061073-2061153 35 2.45e-05 tgaaaattcc cggcaaat cggcaaatta chrI:13014272-13014352 31 2.45e-05 tgaaaatttt cggcaaat cggcaaaccg chrIV:12678509-12678589 5 2.45e-05 aaac cggcaatt gccgtaattg chrI:2020608-2020688 47 2.45e-05 tttccaaaac cggcaatt aacgaaattg chrI:11460644-11460724 12 2.45e-05 ttgaaatttt cggcaaat cggcaagttg chrI:12056932-12057012 52 2.45e-05 tccggcaaat cggcaaat tgccgtaatt chrIII:11985992-11986072 35 2.45e-05 cggaaatttc cggcaatt tcggcaattt chrIII:12832964-12833044 12 2.45e-05 tgattatttc cggcaatt cggcaaagct chrV:4193577-4193657 72 2.45e-05 tcgacaaatt cggcaaat t chrI:14754759-14754839 59 2.45e-05 ggaaaatgtc cggcaaat cggcgaattg chrII:13417738-13417818 21 2.45e-05 tcttgaaaat cggcaatt atcgattttt chrV:18110434-18110514 57 2.45e-05 tggaaatttt cggcaaat ttgaaaattg chrII:13414293-13414373 3 2.45e-05 at cggcaatt atcgattttt chrII:13315303-13315383 51 2.45e-05 tcttaaaaac cggcaatt accgaaattg chrI:4613743-4613823 19 2.45e-05 CTAGAATTAT CGGCAATT TATCAAAAAA chrV:10035681-10035761 42 1.02e-04 CAATTATAAT CGGAAAAT AGGATAGAGC chrI:4360624-4360704 35 1.02e-04 gccgatttgc cggaaatt ttcaattctg chrI:353385-353465 65 1.02e-04 CCAGAAAAAT CGGTAATT TCCGGAAA chrIII:3789845-3789925 73 1.02e-04 GATCAAATTT CGGTAATT chrI:3333624-3333704 31 1.02e-04 TATTTATTCC CGGAaaat gtctgaaaat chrI:649961-650041 56 1.02e-04 ATCGATTTTC CGGTAATT ATCGATTTTT chrX:2706231-2706311 38 1.27e-04 TCGAGTCTGC CGGCATTT GGTGGATGGA chrIV:2221703-2221783 22 1.27e-04 AACAGCAATT CGGCATAT GTTTGGCGCC chrX:11059764-11059844 39 1.66e-04 ATATATTATA CTGCAATT CACAAATCCA chrV:978794-978874 35 1.66e-04 TTTTCGGTGT CTGCAAAT GACACCTCCA chrII:10373759-10373839 31 1.66e-04 TAAATTGTGC CTGCAAAT TGCATGTTTG chrIV:5926875-5926955 72 1.82e-04 CTGCCTAATT CGGCAGAT T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCAAWT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:2061073-2061153 2.5e-05 34_[+4]_38 chrI:13014272-13014352 2.5e-05 30_[+4]_42 chrIV:12678509-12678589 2.5e-05 4_[+4]_68 chrI:2020608-2020688 2.5e-05 46_[+4]_26 chrI:11460644-11460724 2.5e-05 11_[+4]_61 chrI:12056932-12057012 2.5e-05 51_[+4]_21 chrIII:11985992-11986072 2.5e-05 34_[+4]_38 chrIII:12832964-12833044 2.5e-05 11_[+4]_61 chrV:4193577-4193657 2.5e-05 71_[+4]_1 chrI:14754759-14754839 2.5e-05 58_[+4]_14 chrII:13417738-13417818 2.5e-05 20_[+4]_52 chrV:18110434-18110514 2.5e-05 56_[+4]_16 chrII:13414293-13414373 2.5e-05 2_[+4]_70 chrII:13315303-13315383 2.5e-05 50_[+4]_22 chrI:4613743-4613823 2.5e-05 18_[+4]_54 chrV:10035681-10035761 0.0001 41_[+4]_31 chrI:4360624-4360704 0.0001 34_[+4]_38 chrI:353385-353465 0.0001 64_[+4]_8 chrIII:3789845-3789925 0.0001 72_[+4] chrI:3333624-3333704 0.0001 30_[+4]_42 chrI:649961-650041 0.0001 55_[+4]_17 chrX:2706231-2706311 0.00013 37_[+4]_35 chrIV:2221703-2221783 0.00013 21_[+4]_51 chrX:11059764-11059844 0.00017 38_[+4]_34 chrV:978794-978874 0.00017 34_[+4]_38 chrII:10373759-10373839 0.00017 30_[+4]_42 chrIV:5926875-5926955 0.00018 71_[+4]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCAAWT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGCAAWT width=8 seqs=27 chrIV:2061073-2061153 ( 35) CGGCAAAT 1 chrI:13014272-13014352 ( 31) CGGCAAAT 1 chrIV:12678509-12678589 ( 5) CGGCAATT 1 chrI:2020608-2020688 ( 47) CGGCAATT 1 chrI:11460644-11460724 ( 12) CGGCAAAT 1 chrI:12056932-12057012 ( 52) CGGCAAAT 1 chrIII:11985992-11986072 ( 35) CGGCAATT 1 chrIII:12832964-12833044 ( 12) CGGCAATT 1 chrV:4193577-4193657 ( 72) CGGCAAAT 1 chrI:14754759-14754839 ( 59) CGGCAAAT 1 chrII:13417738-13417818 ( 21) CGGCAATT 1 chrV:18110434-18110514 ( 57) CGGCAAAT 1 chrII:13414293-13414373 ( 3) CGGCAATT 1 chrII:13315303-13315383 ( 51) CGGCAATT 1 chrI:4613743-4613823 ( 19) CGGCAATT 1 chrV:10035681-10035761 ( 42) CGGAAAAT 1 chrI:4360624-4360704 ( 35) CGGAAATT 1 chrI:353385-353465 ( 65) CGGTAATT 1 chrIII:3789845-3789925 ( 73) CGGTAATT 1 chrI:3333624-3333704 ( 31) CGGAAAAT 1 chrI:649961-650041 ( 56) CGGTAATT 1 chrX:2706231-2706311 ( 38) CGGCATTT 1 chrIV:2221703-2221783 ( 22) CGGCATAT 1 chrX:11059764-11059844 ( 39) CTGCAATT 1 chrV:978794-978874 ( 35) CTGCAAAT 1 chrII:10373759-10373839 ( 31) CTGCAAAT 1 chrIV:5926875-5926955 ( 72) CGGCAGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCAAWT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.594 E= 2.2e-004 -1140 236 -1140 -1140 -1140 -1140 218 -148 -1140 -1140 235 -1140 -143 200 -1140 -148 174 -1140 -1140 -1140 157 -1140 -240 -207 69 -1140 -1140 74 -1140 -1140 -1140 168 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCAAWT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 2.2e-004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.888889 0.111111 0.000000 0.000000 1.000000 0.000000 0.111111 0.777778 0.000000 0.111111 1.000000 0.000000 0.000000 0.000000 0.888889 0.000000 0.037037 0.074074 0.481481 0.000000 0.000000 0.518519 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCAAWT MEME-4 regular expression -------------------------------------------------------------------------------- CGGCAA[TA]T -------------------------------------------------------------------------------- Time 16.92 secs. ******************************************************************************** ******************************************************************************** MOTIF WTTKCCGG MEME-5 width = 8 sites = 29 llr = 247 E-value = 1.0e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif WTTKCCGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A 6::::::: pos.-specific C ::::89:: probability G :::4:1a8 matrix T 3aa62::1 bits 2.4 * 2.1 * 1.9 ** 1.7 ** ** Relative 1.4 ** **** Entropy 1.2 ** **** (12.3 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel ATTTCCGG consensus T GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTKCCGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:13014272-13014352 53 8.20e-06 aaaccggtaa attgccgg aattgaaaat chrIV:12678509-12678589 52 8.20e-06 gcaattgcca attgccgg aaattcacaa chrIII:11985992-11986072 14 8.20e-06 aattccggca attgccgg tttcggaaat chrI:14754759-14754839 73 8.20e-06 aaatcggcga attgccgg chrV:18110434-18110514 1 8.20e-06 . attgccgg ttttgtaaat chrII:13315303-13315383 30 8.20e-06 aattaccgaa attgccgg aaatcttaaa chrIV:2061073-2061153 65 2.12e-05 ggaattgaaa atttccgg caaaccgg chrIII:3569404-3569484 22 2.12e-05 AATTACCGCC ATTTCCGG AGATCACGAA chrI:353385-353465 12 2.12e-05 aaaatcggta atttccgg aaaaatcgat chrI:11460644-11460724 42 2.12e-05 ggaaatggga atttccgg aaattcgaca chrI:12056932-12057012 39 2.12e-05 gtaactgaaa atttccgg caaatcggca chrI:14131980-14132060 14 2.97e-05 attttccgaa tttgccgg acacgtggtg chrI:4360624-4360704 65 2.97e-05 aatttgccga tttgccgg aaaaaatc chrIV:3849147-3849227 61 2.97e-05 AATCCAATTG TTTGCCGG ATGTACATTC chrI:11186270-11186350 16 4.32e-05 AAACTCGTTT ttttccgg ttgaaattga chrIII:12832964-12833044 34 5.64e-05 aaagctacaa attgtcgg agttaattac chrII:6398824-6398904 47 7.72e-05 ACACCCTATA ATTTTCGG ATTCTCGCGC chrII:3999602-3999682 68 1.30e-04 CTCTCTGCGC ATTTCCGT ACCCC chrII:13845234-13845314 46 1.30e-04 CGGTCGTCAA ATTTCCGT GTTACGCCAT chrV:14792453-14792533 40 1.30e-04 GAAGAGGCGG GTTGCCGG GGGTTCAATG chrV:8129902-8129982 68 1.30e-04 TAATTATTTT ATTTCCGT CAACA chrV:13018365-13018445 20 1.68e-04 ATAATATGCC TTTTTCGG CTTTGCTTAA chrI:15016334-15016414 55 1.68e-04 TAAATCGAAA TTTTTCGG TTTTCCATCA chrI:651587-651667 53 1.68e-04 TAATTATCGA TTTTTCGG ATAATTATCG chrI:649961-650041 12 1.68e-04 TAATTATCGA TTTTTCGG ATAATTATCG chrIII:2913100-2913180 51 1.95e-04 TACAAGTAGG ATTTCGGG ACACAAAAAA chrIII:4444651-4444731 17 2.17e-04 TCCCGACGcc ttttccgt ttccttttag chrV:6478883-6478963 67 2.25e-04 CAAAGTGTCT TTTGCGGG CGGTTC chrI:2020608-2020688 61 2.51e-04 aattaacgaa attgccga aaatttccaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTKCCGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:13014272-13014352 8.2e-06 52_[+5]_20 chrIV:12678509-12678589 8.2e-06 51_[+5]_21 chrIII:11985992-11986072 8.2e-06 13_[+5]_59 chrI:14754759-14754839 8.2e-06 72_[+5] chrV:18110434-18110514 8.2e-06 [+5]_72 chrII:13315303-13315383 8.2e-06 29_[+5]_43 chrIV:2061073-2061153 2.1e-05 64_[+5]_8 chrIII:3569404-3569484 2.1e-05 21_[+5]_51 chrI:353385-353465 2.1e-05 11_[+5]_61 chrI:11460644-11460724 2.1e-05 41_[+5]_31 chrI:12056932-12057012 2.1e-05 38_[+5]_34 chrI:14131980-14132060 3e-05 13_[+5]_59 chrI:4360624-4360704 3e-05 64_[+5]_8 chrIV:3849147-3849227 3e-05 60_[+5]_12 chrI:11186270-11186350 4.3e-05 15_[+5]_57 chrIII:12832964-12833044 5.6e-05 33_[+5]_39 chrII:6398824-6398904 7.7e-05 46_[+5]_26 chrII:3999602-3999682 0.00013 67_[+5]_5 chrII:13845234-13845314 0.00013 45_[+5]_27 chrV:14792453-14792533 0.00013 39_[+5]_33 chrV:8129902-8129982 0.00013 67_[+5]_5 chrV:13018365-13018445 0.00017 19_[+5]_53 chrI:15016334-15016414 0.00017 54_[+5]_18 chrI:651587-651667 0.00017 52_[+5]_20 chrI:649961-650041 0.00017 11_[+5]_61 chrIII:2913100-2913180 0.0002 50_[+5]_22 chrIII:4444651-4444731 0.00022 16_[+5]_56 chrV:6478883-6478963 0.00023 66_[+5]_6 chrI:2020608-2020688 0.00025 60_[+5]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTKCCGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WTTKCCGG width=8 seqs=29 chrI:13014272-13014352 ( 53) ATTGCCGG 1 chrIV:12678509-12678589 ( 52) ATTGCCGG 1 chrIII:11985992-11986072 ( 14) ATTGCCGG 1 chrI:14754759-14754839 ( 73) ATTGCCGG 1 chrV:18110434-18110514 ( 1) ATTGCCGG 1 chrII:13315303-13315383 ( 30) ATTGCCGG 1 chrIV:2061073-2061153 ( 65) ATTTCCGG 1 chrIII:3569404-3569484 ( 22) ATTTCCGG 1 chrI:353385-353465 ( 12) ATTTCCGG 1 chrI:11460644-11460724 ( 42) ATTTCCGG 1 chrI:12056932-12057012 ( 39) ATTTCCGG 1 chrI:14131980-14132060 ( 14) TTTGCCGG 1 chrI:4360624-4360704 ( 65) TTTGCCGG 1 chrIV:3849147-3849227 ( 61) TTTGCCGG 1 chrI:11186270-11186350 ( 16) TTTTCCGG 1 chrIII:12832964-12833044 ( 34) ATTGTCGG 1 chrII:6398824-6398904 ( 47) ATTTTCGG 1 chrII:3999602-3999682 ( 68) ATTTCCGT 1 chrII:13845234-13845314 ( 46) ATTTCCGT 1 chrV:14792453-14792533 ( 40) GTTGCCGG 1 chrV:8129902-8129982 ( 68) ATTTCCGT 1 chrV:13018365-13018445 ( 20) TTTTTCGG 1 chrI:15016334-15016414 ( 55) TTTTTCGG 1 chrI:651587-651667 ( 53) TTTTTCGG 1 chrI:649961-650041 ( 12) TTTTTCGG 1 chrIII:2913100-2913180 ( 51) ATTTCGGG 1 chrIII:4444651-4444731 ( 17) TTTTCCGT 1 chrV:6478883-6478963 ( 67) TTTGCGGG 1 chrI:2020608-2020688 ( 61) ATTGCCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTKCCGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.93691 E= 1.0e+001 105 -1150 -250 15 -1150 -1150 -1150 168 -1150 -1150 -1150 168 -1150 -1150 119 83 -1150 203 -1150 -59 -1150 226 -151 -1150 -1150 -1150 235 -1150 -311 -1150 208 -117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTKCCGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 1.0e+001 0.620690 0.000000 0.034483 0.344828 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.448276 0.551724 0.000000 0.793103 0.000000 0.206897 0.000000 0.931034 0.068966 0.000000 0.000000 0.000000 1.000000 0.000000 0.034483 0.000000 0.827586 0.137931 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WTTKCCGG MEME-5 regular expression -------------------------------------------------------------------------------- [AT]TT[TG][CT]CGG -------------------------------------------------------------------------------- Time 20.22 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:4444651-4444731 4.39e-03 2_[+2(3.22e-06)]_70 chrIII:7593680-7593760 9.69e-02 80 chrV:18988158-18988238 5.77e-01 80 chrIII:4452903-4452983 1.26e-01 80 chrI:4613743-4613823 8.52e-04 18_[+4(2.45e-05)]_33_[+1(3.03e-05)]_\ 13 chrII:13315303-13315383 5.84e-05 15_[+4(2.45e-05)]_6_[+5(8.20e-06)]_\ 13_[+4(2.45e-05)]_6_[+5(8.20e-06)]_8 chrIII:4459346-4459426 5.97e-01 80 chrIV:2828648-2828728 4.53e-01 80 chrII:13414293-13414373 2.33e-03 2_[+4(2.45e-05)]_70 chrIII:4448336-4448416 4.65e-02 80 chrIII:4451176-4451256 7.84e-03 56_[+2(1.03e-05)]_16 chrI:13669675-13669755 3.47e-01 80 chrV:19965478-19965558 9.00e-01 80 chrIII:4454222-4454302 5.69e-01 80 chrV:18110434-18110514 1.99e-04 [+5(8.20e-06)]_13_[+4(2.45e-05)]_6_\ [+5(8.20e-06)]_13_[+4(2.45e-05)]_6_[+5(8.20e-06)]_2 chrI:9944346-9944426 2.33e-01 80 chrX:1059699-1059779 1.24e-02 80 chrIII:5240143-5240223 1.81e-02 80 chrII:13417738-13417818 1.45e-02 20_[+4(2.45e-05)]_20_[+4(2.45e-05)]_\ 24 chrI:6288861-6288941 5.13e-01 80 chrX:8401570-8401650 1.30e-01 80 chrM:11991-12071 6.12e-01 80 chrIV:10102249-10102329 1.56e-02 80 chrIII:4461451-4461531 3.27e-01 80 chrIV:12536535-12536615 1.88e-02 17_[+3(3.54e-05)]_55 chrX:852933-853013 1.01e-02 19_[+3(2.00e-05)]_53 chrII:13467670-13467750 2.36e-01 80 chrII:10163688-10163768 2.76e-02 61_[+1(3.03e-05)]_11 chrIII:9853842-9853922 1.28e-01 80 chrI:649961-650041 5.84e-04 50_[+5(4.32e-05)]_22 chrV:6478883-6478963 4.85e-02 80 chrI:14754759-14754839 6.52e-04 16_[+5(2.12e-05)]_5_[+4(2.45e-05)]_\ [+5(4.32e-05)]_13_[+4(2.45e-05)]_6_[+5(8.20e-06)] chrI:2827066-2827146 8.45e-05 [+3(2.18e-06)]_56_[+1(3.03e-05)]_8 chrV:19356901-19356981 6.23e-01 80 chrV:11337446-11337526 7.71e-01 80 chrIII:39700-39780 3.23e-02 39_[+2(5.22e-06)]_33 chrIII:4456781-4456861 1.75e-02 17_[+2(7.82e-05)]_2_[+2(7.82e-05)]_\ 45 chrIV:6646969-6647049 3.04e-02 80 chrX:5810485-5810565 4.81e-01 80 chrX:3310886-3310966 7.00e-02 80 chrIV:3055453-3055533 1.56e-02 80 chrI:8130161-8130241 7.41e-01 80 chrX:1005156-1005236 2.28e-03 67_[+3(4.09e-05)]_5 chrIII:13329597-13329677 1.43e-03 1_[+1(3.03e-05)]_8_[+2(8.33e-05)]_\ 55 chrIII:8058168-8058248 7.33e-02 80 chrII:10373759-10373839 9.50e-02 80 chrV:4193577-4193657 8.86e-06 34_[+3(2.18e-06)]_29_[+4(2.45e-05)]_\ 1 chrIV:5978393-5978473 9.65e-02 80 chrI:2746112-2746192 1.87e-01 80 chrV:13364614-13364694 7.62e-01 80 chrIII:12832964-12833044 5.48e-05 6_[+5(2.12e-05)]_19_[+5(5.64e-05)]_\ 13_[+4(2.45e-05)]_18 chrIV:10867833-10867913 9.28e-01 80 chrIV:6985110-6985190 3.70e-02 80 chrIV:11868751-11868831 1.26e-02 80 chrIV:12217438-12217518 1.24e-01 80 chrII:6398824-6398904 4.21e-02 46_[+5(7.72e-05)]_26 chrIII:10922665-10922745 1.03e-01 34_[+2(1.55e-05)]_38 chrII:4909479-4909559 4.27e-02 80 chrX:2707614-2707694 3.78e-01 80 chrIV:1916398-1916478 1.78e-02 25_[+2(6.47e-05)]_47 chrX:12688855-12688935 2.50e-01 80 chrX:6114587-6114667 1.74e-01 80 chrX:12083756-12083836 5.28e-04 54_[+2(5.22e-06)]_[+2(5.22e-06)]_10 chrI:7714710-7714790 2.34e-01 80 chrX:15118566-15118646 8.59e-01 80 chrV:978794-978874 4.78e-04 80 chrV:6684723-6684803 2.33e-02 27_[+2(7.82e-05)]_45 chrIV:6656598-6656678 3.19e-02 31_[+1(3.03e-05)]_41 chrIV:1906812-1906892 9.79e-03 80 chrIII:10183464-10183544 3.55e-01 80 chrII:6940041-6940121 2.55e-02 80 chrII:9574520-9574600 4.24e-01 80 chrI:14962331-14962411 3.54e-02 52_[+2(6.47e-05)]_20 chrX:1996209-1996289 5.01e-02 53_[+2(7.82e-05)]_19 chrI:651587-651667 1.13e-02 80 chrIII:423193-423273 5.79e-01 80 chrX:6211479-6211559 4.51e-01 80 chrI:800152-800232 8.61e-01 80 chrI:13042377-13042457 3.16e-01 80 chrX:16286460-16286540 5.76e-01 80 chrIV:5093617-5093697 1.66e-02 4_[+3(2.35e-05)]_68 chrM:4379-4459 6.37e-01 80 chrX:9939849-9939929 1.78e-01 80 chrIII:1160707-1160787 1.10e-01 80 chrI:6287988-6288068 3.42e-02 80 chrI:3908172-3908252 1.65e-01 80 chrI:13608587-13608667 8.96e-02 80 chrV:15453057-15453137 2.43e-01 80 chrIV:175754-175834 7.74e-02 80 chrI:14523098-14523178 2.22e-01 80 chrI:130785-130865 3.66e-01 80 chrII:2832714-2832794 1.89e-02 51_[+3(1.11e-05)]_21 chrIV:1896320-1896400 4.79e-03 80 chrX:14486696-14486776 2.71e-01 80 chrIV:3849147-3849227 1.43e-02 60_[+5(2.97e-05)]_12 chrIV:2221703-2221783 1.40e-01 80 chrV:8592497-8592577 3.98e-01 80 chrM:3959-4039 9.17e-01 80 chrI:8783855-8783935 1.70e-01 2_[+3(2.87e-05)]_70 chrIII:12340215-12340295 1.16e-01 80 chrV:8129902-8129982 2.64e-02 80 chrIV:9007036-9007116 4.72e-03 80 chrI:11091377-11091457 1.46e-01 80 chrX:6258585-6258665 6.92e-01 80 chrIV:16396921-16397001 4.92e-04 8_[+3(1.11e-05)]_4_[+1(3.03e-05)]_\ 52 chrM:165-245 9.79e-01 80 chrII:6412042-6412122 9.19e-01 80 chrI:3333624-3333704 1.73e-02 80 chrV:8797065-8797145 2.70e-01 80 chrI:4775489-4775569 2.29e-01 80 chrIV:3521872-3521952 2.00e-04 71_[+3(2.18e-06)]_1 chrV:4967352-4967432 2.99e-01 80 chrIII:4455100-4455180 2.17e-01 80 chrIII:7202417-7202497 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4.20e-03 22_[+3(4.93e-05)]_50 chrIII:3789845-3789925 8.07e-03 80 chrX:15347840-15347920 2.56e-01 80 chrII:5399334-5399414 2.12e-01 80 chrIV:14877024-14877104 4.93e-02 80 chrI:11186270-11186350 2.74e-03 15_[+5(4.32e-05)]_57 chrII:11036894-11036974 1.01e-01 68_[+2(7.82e-05)]_4 chrV:311621-311701 1.17e-01 80 chrI:11460644-11460724 9.99e-04 11_[+4(2.45e-05)]_22_[+5(2.12e-05)]_\ 31 chrIII:6903245-6903325 2.10e-01 80 chrX:4759884-4759964 1.34e-04 68_[+3(5.47e-05)]_4 chrV:6230968-6231048 5.95e-02 40_[+3(6.67e-05)]_32 chrIV:5926875-5926955 3.81e-03 80 chrII:5418377-5418457 4.84e-02 80 chrI:13654901-13654981 1.13e-01 80 chrV:3449860-3449940 4.89e-01 80 chrIII:2913100-2913180 4.98e-02 80 chrI:11607042-11607122 1.20e-02 80 chrX:17369435-17369515 1.28e-02 80 chrIII:10657149-10657229 6.87e-01 80 chrX:2706231-2706311 1.49e-03 80 chrIII:12613799-12613879 4.91e-06 8_[+3(5.63e-06)]_53_[+2(1.55e-05)]_\ 3 chrIII:9451113-9451193 1.11e-01 80 chrI:353385-353465 1.21e-04 11_[+5(2.12e-05)]_9_[+1(3.03e-05)]_\ 33_[+5(2.12e-05)]_3 chrV:20220868-20220948 8.82e-03 32_[+3(2.18e-06)]_40 chrIII:4519528-4519608 1.80e-02 80 chrI:2020608-2020688 7.95e-04 11_[+4(2.45e-05)]_27_[+4(2.45e-05)]_\ 26 chrIV:2193061-2193141 7.72e-01 80 chrV:9395340-9395420 5.46e-02 80 chrI:933474-933554 2.83e-01 80 chrM:9608-9688 7.44e-01 80 chrV:11700097-11700177 2.67e-01 80 chrII:10990774-10990854 1.44e-01 80 chrIII:3863853-3863933 1.10e-01 80 chrIV:12546109-12546189 5.66e-02 80 chrV:14792453-14792533 2.08e-02 80 chrIV:12544730-12544810 2.63e-01 80 chrIII:9854044-9854124 4.46e-01 80 chrX:10592040-10592120 1.25e-01 25_[+3(9.27e-05)]_47 chrV:12039983-12040063 1.46e-01 80 chrI:15016334-15016414 2.28e-02 80 chrII:9075199-9075279 1.09e-01 80 chrII:15266267-15266347 1.64e-01 80 chrI:1256298-1256378 2.83e-01 80 chrX:2707822-2707902 1.53e-01 60_[+3(2.35e-05)]_12 chrII:7814436-7814516 3.77e-01 80 chrX:4307568-4307648 7.33e-02 80 chrIV:5854480-5854560 9.49e-02 40_[+2(4.35e-05)]_32 chrV:5960977-5961057 1.20e-02 80 chrX:16663296-16663376 6.57e-04 62_[+2(5.22e-06)]_10 chrIII:6488950-6489030 1.49e-01 80 chrI:9571655-9571735 4.05e-03 50_[+2(6.47e-05)]_2_[+1(3.03e-05)]_\ 12 chrX:11211494-11211574 2.24e-01 80 chrX:8398584-8398664 3.90e-01 80 chrII:4583082-4583162 3.79e-01 80 chrV:3587790-3587870 6.92e-02 1_[+3(7.00e-05)]_71 chrV:13018365-13018445 1.78e-03 57_[+3(7.87e-05)]_15 chrM:9406-9486 5.05e-01 80 chrIII:3569404-3569484 1.06e-02 21_[+5(2.12e-05)]_51 chrIII:343907-343987 2.94e-02 80 chrIV:5164568-5164648 1.16e-01 80 chrIII:5906243-5906323 4.56e-01 80 chrX:10382875-10382955 4.89e-01 80 chrX:13146090-13146170 1.48e-01 12_[+2(7.82e-05)]_60 chrI:4360624-4360704 1.52e-03 29_[+5(2.97e-05)]_27_[+5(2.97e-05)]_\ 8 chrIV:9619053-9619133 1.81e-01 80 chrV:1577065-1577145 5.41e-01 80 chrM:10826-10906 9.62e-01 80 chrX:2044992-2045072 1.17e-01 80 chrIII:13293187-13293267 4.32e-01 80 chrX:14413709-14413789 7.53e-02 80 chrM:3702-3782 2.82e-01 80 chrII:11284700-11284780 1.86e-01 80 chrX:3914409-3914489 3.05e-01 80 chrV:18589669-18589749 1.00e-02 35_[+2(4.03e-05)]_19_[+2(4.03e-05)]_\ 10 chrX:8603133-8603213 3.66e-01 80 chrIV:12678509-12678589 1.92e-04 4_[+4(2.45e-05)]_27_[+4(2.45e-05)]_\ 4_[+5(8.20e-06)]_21 chrV:11947337-11947417 9.68e-02 65_[+1(3.03e-05)]_7 chrIII:5739972-5740052 6.36e-01 80 chrIII:9971544-9971624 1.63e-01 80 chrI:4511225-4511305 1.65e-01 80 chrIII:4542523-4542603 4.46e-02 66_[+2(1.03e-05)]_6 chrV:10035681-10035761 5.19e-02 80 chrIII:85379-85459 8.44e-02 80 chrX:3318195-3318275 2.25e-01 80 chrIII:6279963-6280043 6.24e-01 80 chrI:13014272-13014352 4.16e-04 9_[+5(8.20e-06)]_13_[+4(2.45e-05)]_\ 14_[+5(8.20e-06)]_20 chrX:14321110-14321190 3.50e-01 80 chrIV:14013777-14013857 8.84e-01 80 chrIV:12193485-12193565 6.18e-01 80 chrIII:6431915-6431995 6.46e-01 80 chrI:14131980-14132060 3.14e-02 13_[+5(2.97e-05)]_59 chrIV:2390581-2390661 8.50e-01 80 chrV:7820475-7820555 4.16e-01 80 chrV:4968353-4968433 2.93e-01 80 chrM:7325-7405 9.13e-01 80 chrX:11059764-11059844 9.32e-02 80 chrI:445604-445684 1.66e-01 68_[+2(3.53e-05)]_4 chrII:15267498-15267578 1.90e-01 80 chrII:13845234-13845314 9.13e-02 80 chrIV:2061073-2061153 7.27e-04 2_[+5(2.12e-05)]_24_[+4(2.45e-05)]_\ [+4(2.45e-05)]_14_[+5(2.12e-05)]_8 chrIV:11605045-11605125 6.39e-02 28_[+3(7.00e-05)]_44 chrIV:9316202-9316282 3.09e-02 72_[+2(1.03e-05)] chrIV:5964761-5964841 3.71e-01 80 chrIII:9965662-9965742 6.85e-02 80 chrII:3999602-3999682 2.42e-04 52_[+2(1.55e-05)]_20 chrIV:10868033-10868113 1.98e-01 80 chrX:2713134-2713214 5.44e-01 80 chrX:8156169-8156249 1.37e-01 80 chrIII:5181151-5181231 5.48e-01 80 chrV:14139427-14139507 8.68e-01 80 chrX:5056379-5056459 8.65e-01 80 chrI:7942563-7942643 3.38e-03 57_[+1(3.03e-05)]_15 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************