******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-39.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:8059583-8059663 1.0000 80 chrI:15030902-15030982 1.0000 80 chrII:2758616-2758696 1.0000 80 chrX:16240804-16240884 1.0000 80 chrIV:14104904-14104984 1.0000 80 chrIV:7575306-7575386 1.0000 80 chrIII:8605123-8605203 1.0000 80 chrX:1857936-1858016 1.0000 80 chrV:19223692-19223772 1.0000 80 chrIII:5900819-5900899 1.0000 80 chrIV:14105732-14105812 1.0000 80 chrII:13315854-13315934 1.0000 80 chrI:2334934-2335014 1.0000 80 chrX:2857235-2857315 1.0000 80 chrI:9414469-9414549 1.0000 80 chrV:4421933-4422013 1.0000 80 chrX:13858855-13858935 1.0000 80 chrX:371883-371963 1.0000 80 chrIII:5958307-5958387 1.0000 80 chrIV:12467918-12467998 1.0000 80 chrII:11979860-11979940 1.0000 80 chrI:10435471-10435551 1.0000 80 chrI:9412047-9412127 1.0000 80 chrII:15076937-15077017 1.0000 80 chrII:9269142-9269222 1.0000 80 chrII:873202-873282 1.0000 80 chrX:788168-788248 1.0000 80 chrII:5016318-5016398 1.0000 80 chrI:6021848-6021928 1.0000 80 chrII:12462396-12462476 1.0000 80 chrII:1663712-1663792 1.0000 80 chrI:11533886-11533966 1.0000 80 chrIII:2960862-2960942 1.0000 80 chrI:12217833-12217913 1.0000 80 chrIII:2234409-2234489 1.0000 80 chrIV:3539416-3539496 1.0000 80 chrI:9108864-9108944 1.0000 80 chrI:13260413-13260493 1.0000 80 chrI:10822541-10822621 1.0000 80 chrII:1042311-1042391 1.0000 80 chrI:12904048-12904128 1.0000 80 chrX:2452883-2452963 1.0000 80 chrIII:9538949-9539029 1.0000 80 chrX:12320889-12320969 1.0000 80 chrI:2829247-2829327 1.0000 80 chrV:16800600-16800680 1.0000 80 chrIII:5500108-5500188 1.0000 80 chrIII:13313941-13314021 1.0000 80 chrI:8512448-8512528 1.0000 80 chrV:19303739-19303819 1.0000 80 chrI:12659442-12659522 1.0000 80 chrIII:4920803-4920883 1.0000 80 chrX:14238441-14238521 1.0000 80 chrI:4254794-4254874 1.0000 80 chrIII:11615014-11615094 1.0000 80 chrV:10813872-10813952 1.0000 80 chrII:159478-159558 1.0000 80 chrIII:5959235-5959315 1.0000 80 chrV:18689810-18689890 1.0000 80 chrIV:8146351-8146431 1.0000 80 chrII:5667680-5667760 1.0000 80 chrI:8103106-8103186 1.0000 80 chrIII:2263128-2263208 1.0000 80 chrIII:2112605-2112685 1.0000 80 chrII:7755350-7755430 1.0000 80 chrX:8911249-8911329 1.0000 80 chrV:1570733-1570813 1.0000 80 chrI:13850939-13851019 1.0000 80 chrIV:9635796-9635876 1.0000 80 chrIV:9770937-9771017 1.0000 80 chrI:10438600-10438680 1.0000 80 chrIV:17335184-17335264 1.0000 80 chrX:8136600-8136680 1.0000 80 chrIII:7907551-7907631 1.0000 80 chrX:12989334-12989414 1.0000 80 chrI:4299626-4299706 1.0000 80 chrIV:7168170-7168250 1.0000 80 chrIII:5906196-5906276 1.0000 80 chrIII:11974562-11974642 1.0000 80 chrIV:4799265-4799345 1.0000 80 chrII:3957637-3957717 1.0000 80 chrIV:7561901-7561981 1.0000 80 chrII:6926198-6926278 1.0000 80 chrV:12065483-12065563 1.0000 80 chrIII:5718537-5718617 1.0000 80 chrIV:6601305-6601385 1.0000 80 chrIV:14325868-14325948 1.0000 80 chrV:6494821-6494901 1.0000 80 chrX:14491117-14491197 1.0000 80 chrIV:5169571-5169651 1.0000 80 chrII:2130739-2130819 1.0000 80 chrI:3481529-3481609 1.0000 80 chrV:19644055-19644135 1.0000 80 chrX:915761-915841 1.0000 80 chrX:1845708-1845788 1.0000 80 chrI:13301576-13301656 1.0000 80 chrII:2832705-2832785 1.0000 80 chrIV:17333641-17333721 1.0000 80 chrII:2770941-2771021 1.0000 80 chrX:17714536-17714616 1.0000 80 chrX:8605229-8605309 1.0000 80 chrIV:12376150-12376230 1.0000 80 chrV:9729902-9729982 1.0000 80 chrI:11169668-11169748 1.0000 80 chrIII:6452894-6452974 1.0000 80 chrIV:8819592-8819672 1.0000 80 chrX:2368586-2368666 1.0000 80 chrIII:9829825-9829905 1.0000 80 chrIII:870047-870127 1.0000 80 chrII:10662804-10662884 1.0000 80 chrV:1556385-1556465 1.0000 80 chrIV:9772258-9772338 1.0000 80 chrV:18021694-18021774 1.0000 80 chrV:9346942-9347022 1.0000 80 chrX:8160193-8160273 1.0000 80 chrV:18589778-18589858 1.0000 80 chrI:5422331-5422411 1.0000 80 chrX:10204446-10204526 1.0000 80 chrV:16040585-16040665 1.0000 80 chrI:10585459-10585539 1.0000 80 chrIII:428618-428698 1.0000 80 chrX:13226889-13226969 1.0000 80 chrII:12756276-12756356 1.0000 80 chrI:14096418-14096498 1.0000 80 chrI:15041556-15041636 1.0000 80 chrI:2151857-2151937 1.0000 80 chrIII:7911792-7911872 1.0000 80 chrV:20249843-20249923 1.0000 80 chrIII:9109407-9109487 1.0000 80 chrI:6166783-6166863 1.0000 80 chrX:4503380-4503460 1.0000 80 chrV:5239463-5239543 1.0000 80 chrX:8157273-8157353 1.0000 80 chrII:4935673-4935753 1.0000 80 chrIV:12123010-12123090 1.0000 80 chrIV:8922136-8922216 1.0000 80 chrIII:12714010-12714090 1.0000 80 chrI:10374306-10374386 1.0000 80 chrI:11554580-11554660 1.0000 80 chrI:4198855-4198935 1.0000 80 chrX:8416859-8416939 1.0000 80 chrX:11297135-11297215 1.0000 80 chrX:6622929-6623009 1.0000 80 chrX:14486671-14486751 1.0000 80 chrIII:8956395-8956475 1.0000 80 chrIII:5879446-5879526 1.0000 80 chrI:9131958-9132038 1.0000 80 chrIII:4502677-4502757 1.0000 80 chrIV:8334126-8334206 1.0000 80 chrIII:1468589-1468669 1.0000 80 chrX:8791953-8792033 1.0000 80 chrII:7364168-7364248 1.0000 80 chrII:4902194-4902274 1.0000 80 chrII:7381296-7381376 1.0000 80 chrX:2090675-2090755 1.0000 80 chrIII:535622-535702 1.0000 80 chrX:14589206-14589286 1.0000 80 chrI:6073625-6073705 1.0000 80 chrIV:6327533-6327613 1.0000 80 chrIV:3694815-3694895 1.0000 80 chrX:14243700-14243780 1.0000 80 chrX:7569833-7569913 1.0000 80 chrIII:4515383-4515463 1.0000 80 chrX:6263367-6263447 1.0000 80 chrX:826096-826176 1.0000 80 chrX:10391354-10391434 1.0000 80 chrIII:13687396-13687476 1.0000 80 chrIV:4597108-4597188 1.0000 80 chrIII:12368473-12368553 1.0000 80 chrIV:9858271-9858351 1.0000 80 chrI:8600983-8601063 1.0000 80 chrIV:8762639-8762719 1.0000 80 chrI:9581590-9581670 1.0000 80 chrII:2772316-2772396 1.0000 80 chrIII:11481564-11481644 1.0000 80 chrIV:8289715-8289795 1.0000 80 chrII:3956124-3956204 1.0000 80 chrIV:13206057-13206137 1.0000 80 chrII:8222928-8223008 1.0000 80 chrIII:4274753-4274833 1.0000 80 chrV:16742361-16742441 1.0000 80 chrIII:9950232-9950312 1.0000 80 chrV:7978953-7979033 1.0000 80 chrI:12426850-12426930 1.0000 80 chrII:2301013-2301093 1.0000 80 chrIII:2282728-2282808 1.0000 80 chrX:13238534-13238614 1.0000 80 chrII:11537349-11537429 1.0000 80 chrV:6044027-6044107 1.0000 80 chrI:12065401-12065481 1.0000 80 chrV:18179791-18179871 1.0000 80 chrX:12854219-12854299 1.0000 80 chrX:8737189-8737269 1.0000 80 chrIII:2126034-2126114 1.0000 80 chrII:9491259-9491339 1.0000 80 chrIII:2112809-2112889 1.0000 80 chrI:310863-310943 1.0000 80 chrX:3467151-3467231 1.0000 80 chrIII:7972073-7972153 1.0000 80 chrII:2145907-2145987 1.0000 80 chrX:9505121-9505201 1.0000 80 chrI:7321616-7321696 1.0000 80 chrII:5649585-5649665 1.0000 80 chrI:354958-355038 1.0000 80 chrII:1725968-1726048 1.0000 80 chrX:4617070-4617150 1.0000 80 chrX:7788139-7788219 1.0000 80 chrII:5227835-5227915 1.0000 80 chrX:13727105-13727185 1.0000 80 chrII:11535680-11535760 1.0000 80 chrIII:11719561-11719641 1.0000 80 chrV:2067010-2067090 1.0000 80 chrX:17464207-17464287 1.0000 80 chrIII:1085146-1085226 1.0000 80 chrII:5081348-5081428 1.0000 80 chrIV:10085848-10085928 1.0000 80 chrIII:12626399-12626479 1.0000 80 chrX:11662734-11662814 1.0000 80 chrII:13817435-13817515 1.0000 80 chrV:11281478-11281558 1.0000 80 chrIV:7488076-7488156 1.0000 80 chrIV:12158044-12158124 1.0000 80 chrIV:5076575-5076655 1.0000 80 chrIV:17162740-17162820 1.0000 80 chrIII:188600-188680 1.0000 80 chrI:7084575-7084655 1.0000 80 chrI:7224680-7224760 1.0000 80 chrI:9042835-9042915 1.0000 80 chrIII:3127734-3127814 1.0000 80 chrX:13598164-13598244 1.0000 80 chrX:7100411-7100491 1.0000 80 chrI:13289919-13289999 1.0000 80 chrI:15034085-15034165 1.0000 80 chrX:13977625-13977705 1.0000 80 chrIII:8310320-8310400 1.0000 80 chrV:14415310-14415390 1.0000 80 chrV:12191151-12191231 1.0000 80 chrV:246236-246316 1.0000 80 chrIV:425790-425870 1.0000 80 chrII:960445-960525 1.0000 80 chrII:12986014-12986094 1.0000 80 chrII:3008644-3008724 1.0000 80 chrV:13649916-13649996 1.0000 80 chrII:6418157-6418237 1.0000 80 chrX:10597684-10597764 1.0000 80 chrV:4487999-4488079 1.0000 80 chrI:14708125-14708205 1.0000 80 chrIII:87331-87411 1.0000 80 chrX:16943993-16944073 1.0000 80 chrX:9431234-9431314 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ceh-39/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-39.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.282 C 0.221 G 0.221 T 0.277 Background letter frequencies (from file dataset with add-one prior applied): A 0.282 C 0.221 G 0.221 T 0.277 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF WATCGATW MEME-1 width = 8 sites = 126 llr = 947 E-value = 1.1e-080 ******************************************************************************** -------------------------------------------------------------------------------- Motif WATCGATW MEME-1 Description -------------------------------------------------------------------------------- Simplified A 49:::9:4 pos.-specific C ::1a::12 probability G 11::a1:: matrix T 5:9:::94 bits 2.2 ** 2.0 ** 1.7 ** 1.5 ***** Relative 1.3 ****** Entropy 1.1 ****** (10.8 bits) 0.9 ****** 0.7 ****** 0.4 ******* 0.2 ******** 0.0 -------- Multilevel TATCGATA consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATCGATW MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:13727105-13727185 45 4.61e-05 TCACCCGTTC TATCGATT CCATCGACAG chrI:354958-355038 69 4.61e-05 ttctggaatt tatcgatt tttc chrX:3467151-3467231 40 4.61e-05 GTGAGACAAG TATCGATT TATGTTGTGC chrIII:2112809-2112889 46 4.61e-05 attcggaaat tatcgatt ttttggggat chrV:18179791-18179871 73 4.61e-05 AGACACATCT TATCGATT chrIII:2282728-2282808 50 4.61e-05 TCCAGGAAAT TATCGATT TTTAAAAAAT chrII:3956124-3956204 31 4.61e-05 TTTCTAGATT TATCGATT AATTCCTTCA chrII:2772316-2772396 16 4.61e-05 TAGGATGTTT TATCGATT CATTTTGATC chrIV:4597108-4597188 38 4.61e-05 TATACATAAA TATCGATT AGTTTTTTGT chrIII:535622-535702 40 4.61e-05 ACATGCCAAT TATCGATT CTGTGCTCTT chrIII:1468589-1468669 54 4.61e-05 TAAGAAAAAT TATCGATT TTTTCAAATA chrI:14096418-14096498 39 4.61e-05 GGGGGGGAAA TATCGATT CTCTAAAGAA chrI:10585459-10585539 60 4.61e-05 gacgtagaga TATCGATA TCAAAGAGTG chrX:915761-915841 35 4.61e-05 TGACACACTT TATCGATT CTATTAATTA chrV:19644055-19644135 12 4.61e-05 TGAGTTAAAT TATCGATT TTTTTCAAAT chrIV:4799265-4799345 71 4.61e-05 TCTAAAAGAT TATCGATT TG chrX:8136600-8136680 43 4.61e-05 GTGCACGTAC TATCGATA TGCAACAAGA chrIV:9635796-9635876 8 4.61e-05 TGCGAGT TATCGATT CCTACCATCT chrII:7755350-7755430 37 4.61e-05 CGCGCACGAA TATCGATT TCTCTTGAAG chrIII:2112605-2112685 6 4.61e-05 AAAAT TATCGATT TTTTAGAAAT chrI:4254794-4254874 35 4.61e-05 AAACGAAATC TATCGATT TTTGTGTACT chrX:14238441-14238521 20 4.61e-05 CCTTCAAGTA TATCGATT CTGCTAATGC chrV:19303739-19303819 50 4.61e-05 AAAGAGTAAT TATCGATT TTCTATATAC chrIII:5500108-5500188 39 4.61e-05 CCGCGCATTT TATCGATT CCTTCTGGTT chrII:1042311-1042391 53 4.61e-05 GCACCTTTAA TATCGATT GTGACGCGGT chrIII:2960862-2960942 63 4.61e-05 ttctgaaatg tatcgatt tttcggaaaa chrII:873202-873282 53 4.61e-05 CTTGGAAAAT TATCGATT TTCGGTTAGT chrI:9414469-9414549 3 4.61e-05 CG TATCGATT CATTATCCGC chrI:2334934-2335014 60 4.61e-05 TTTGTTAAAT TATCGATT TTTTTTCAAA chrI:15030902-15030982 37 4.61e-05 AGTATAATAA TATCGATT CGGTAGAGCG chrI:8059583-8059663 42 4.61e-05 AGCACTACAT TATCGATT GCAGCTTTGG chrIII:8310320-8310400 33 9.31e-05 AACCAGTTTT AATCGATA CATGGACGCA chrIV:17162740-17162820 66 9.31e-05 ACTCAAAATA AATCGATA CATTTCT chrIII:1085146-1085226 28 9.31e-05 CGTTTTAAAA AATCGATA ATTGGTGTCA chrX:12854219-12854299 32 9.31e-05 GTTGCACAAG AATCGATA AACTGCTTGG chrX:826096-826176 54 9.31e-05 CGCTGCAAAG AATCGATA AGTTGAGCGT chrX:2090675-2090755 61 9.31e-05 ACTGTAGAAC AATCGATA AAACGAAGAG chrII:4902194-4902274 36 9.31e-05 TTTGGGTGCA AATCGATA ATTTCGTGTT chrIII:5879446-5879526 23 9.31e-05 CTCCGTTGAA AATCGATA CGCGCTCTGT chrIII:8956395-8956475 45 9.31e-05 ACGCTGAAAA AATCGATA TCGGGTACAC chrI:10374306-10374386 29 9.31e-05 ATCAAGAACA AATCGATT TCTTACAAAT chrIII:9109407-9109487 72 9.31e-05 AAGAGAGACT AATCGATA T chrII:12756276-12756356 8 9.31e-05 CTCAACG AATCGATA ATTGTTATGC chrIII:870047-870127 40 9.31e-05 TCCCGCTGCC AATCGATT TTGGCGGGAA chrI:13301576-13301656 56 9.31e-05 AACCAATTTA AATCGATA CTCAGCTCTT chrIV:7168170-7168250 12 9.31e-05 TGTACATTTG AATCGATT ACCACGGTCA chrIII:11615014-11615094 7 9.31e-05 ATAAAA AATCGATA ATTTACACAA chrI:12659442-12659522 42 9.31e-05 AGATAGATAC AATCGATT GACGGTCTTT chrV:16800600-16800680 9 9.31e-05 ATGAGATC AATCGATA TTCTTCTCGC chrI:12904048-12904128 59 9.31e-05 ATCGGCGCAG AATCGATA ACGATGACGG chrI:13260413-13260493 29 9.31e-05 TGCAGAAAGT AATCGATA GAGTGTGAGA chrI:11533886-11533966 4 9.31e-05 AAA AATCGATA ATTTTCCGAA chrII:5016318-5016398 50 9.31e-05 CGTAACAGTG AATCGATA GATTCTTCTC chrII:13315854-13315934 63 9.31e-05 AATTTTGAAA AATCGATA AATTTTGAAA chrIV:7575306-7575386 31 9.31e-05 GACCTGACGA AATCGATA ATTAATCCTT chrX:16240804-16240884 26 9.31e-05 AGGGAAAAAG AATCGATA GGTCGCGCAC chrIV:8762639-8762719 57 1.11e-04 ATGTGCATAA TATCGATC CTGCGCAGTT chrI:9131958-9132038 68 1.11e-04 CACCACCACT TATCGATC TATTT chrV:9346942-9347022 7 1.11e-04 AGTGAA TATCGATC GATATCGACT chrIV:6601305-6601385 47 1.11e-04 TTGGTTGCAG TATCGATC GGAAAACAAT chrIII:9538949-9539029 31 1.11e-04 ACCTAGAATA TATCGATC GTCGTAGCGC chrI:10435471-10435551 33 1.11e-04 ACCTGGGAAG TATCGATC GGGAAACACG chrIV:14105732-14105812 20 1.11e-04 CTCATTGAAT TATCGATC CGTTTTCCCA chrV:19223692-19223772 63 1.11e-04 CAATGAAGAC TATCGATC GTAACTGTGA chrII:1725968-1726048 49 1.30e-04 GCAATTATAC AATCGATC GGCGTTGGAG chrX:9505121-9505201 59 1.30e-04 CTCACTTTTC AATCGATC AACCTTTTTG chrIV:8922136-8922216 70 1.30e-04 TTCGGACGAT AATCGATC GAT chrI:6021848-6021928 48 1.30e-04 ACCGTCAATT AATCGATC GAGTGTGCAA chrV:4487999-4488079 26 1.67e-04 CTGGATTTCC GATCGATA AATTCCCCTA chrII:960445-960525 32 1.67e-04 ATGTGCGATG GATCGATA GAATTGAAAG chrV:6044027-6044107 56 1.67e-04 AACCGCGAAA GATCGATA AACAAGGCAC chrV:16742361-16742441 46 1.67e-04 GACCCGCATC GATCGATT TATAGCGCAC chrV:5239463-5239543 45 1.67e-04 AAATTTTTGC GATCGATA TAATAGGCCC chrX:8605229-8605309 49 1.67e-04 CAGACGGTTA GATCGATA TAGTGTTTTG chrII:2770941-2771021 10 1.67e-04 GTTATTTTT GATCGATA ATCAGATGGT chrIII:5906196-5906276 27 1.67e-04 AATGAACACT GATCGATA AATTGGACAG chrI:8103106-8103186 44 1.67e-04 ATCAAGTTTC GATCGATA TTCACTAGCT chrI:8512448-8512528 9 1.67e-04 TCAAAACC GATCGATT TGTTGCTCTA chrX:13858855-13858935 66 1.67e-04 CAAGAAAGCG GATCGATA GATACTA chrIII:2234409-2234489 48 1.81e-04 CCAACTGCTC GATCGATC GGTTGCCATA chrX:371883-371963 35 1.81e-04 CGCTCTTTTT GATCGATC ATACCTGCGT chrX:8791953-8792033 57 2.36e-04 GCACTACTCT TGTCGATT TACGCGAGCT chrIII:188600-188680 33 2.54e-04 AACGATGAAA AATCGATG AAATTCGGGG chrX:14243700-14243780 3 2.54e-04 AC AATCGATG AATCGCCGTC chrII:7364168-7364248 47 2.54e-04 ACGCAGAGGG AATCGATG AAGAAGACAA chrX:2452883-2452963 20 2.54e-04 CTTTGCACCA AATCGATG AACGATGAGA chrX:13598164-13598244 3 3.28e-04 CA TATCGACT CGCCTCATGG chrV:2067010-2067090 1 3.28e-04 . AGTCGATA AAATGGGGGC chrII:8222928-8223008 49 3.28e-04 GTCCCTCTTC AGTCGATA TTTGTCTCAA chrX:6263367-6263447 28 3.28e-04 CGCCTCGAAA AGTCGATA ACTGCCGAAG chrX:17714536-17714616 35 3.28e-04 CTTTCTCGCG AGTCGATA AAGAATacac chrIV:17333641-17333721 1 3.28e-04 . TATCGACT CTGAACAGTT chrV:6494821-6494901 37 3.28e-04 GCACAATTCT AGTCGATA AAAGGAACAA chrIV:7561901-7561981 3 3.28e-04 AT AGTCGATA ACGAGACAAA chrX:8911249-8911329 5 3.28e-04 CAGT TATCGACT CAATGCGACT chrIII:2263128-2263208 67 3.28e-04 GAAATTAACC AGTCGATA ATGATG chrIV:5076575-5076655 19 3.65e-04 TTTTGTCGAA TACCGATT CCAACTCAAT chrIV:12158044-12158124 28 3.65e-04 CTCTTGACAT TACCGATA GTCCTCTTGC chrII:10662804-10662884 50 4.02e-04 TTCATTAATT AATCGACT AAAAATGAAA chrX:12989334-12989414 32 4.02e-04 AAGGTTCGTA AATCGACT GACGAGAGAG chrV:12191151-12191231 65 4.76e-04 TGTCGGCCGA TATCGGTA TTTAGATA chrV:14415310-14415390 49 4.76e-04 TCGTGACTTT TATCGGtt gtgcaaacac chrII:5649585-5649665 28 4.76e-04 ACGCAGAGAA AACCGATA ACTGAACAGT chrX:14589206-14589286 34 4.76e-04 AAATTGCGAC TATCGGTT TTTGCCAATG chrII:4935673-4935753 70 4.76e-04 ATTGAATTTT TATCGGTT TTG chrV:18021694-18021774 48 4.76e-04 CGTTGCGGAA AACCGATA AATTCTCGAT chrIII:9829825-9829905 28 4.76e-04 ACACAGCAAA TATCGGTT TTCTCAATTT chrV:9729902-9729982 1 4.76e-04 . AACCGATA ACAGCGTTAC chrII:5667680-5667760 7 4.76e-04 TCCAGA AACCGATA TCCAGATTCC chrV:18689810-18689890 24 4.76e-04 GTTTTAAAAA AACCGATA ATCCGTCTTG chrII:1663712-1663792 68 4.76e-04 ACACATATTA TATCGGTT TTTTC chrII:15076937-15077017 12 4.76e-04 CAGGAAAAAA AACCGATA ATTCTCTGCG chrI:10822541-10822621 69 4.90e-04 CGGAGAACCG TGTCGATC GAAC chrIII:7972073-7972153 55 5.64e-04 TATTAGAAAA CATCGATT GGTTTTCCCA chrIV:8289715-8289795 25 5.64e-04 ATTCGAAATT CATCGATA AGCGGGCGCA chrI:4299626-4299706 8 5.64e-04 CGGTAGG CATCGATT CGGTTTTCCC chrI:7084575-7084655 1 5.93e-04 . TATCGACC GACATCACAC chrIV:8819592-8819672 28 5.93e-04 GATGTTTGAT TATCGACC CACCAAGAAG chrIII:5959235-5959315 54 5.93e-04 CTCCTTCAAT TATCGACC CATTTTTCAG chrIV:12467918-12467998 71 5.93e-04 CATGTACCTG TATCGACC CG chrII:11979860-11979940 70 6.66e-04 TGCGCGTCGC GGTCGATA AGC chrX:2857235-2857315 26 6.66e-04 GGAAATAGTG GGTCGATA GTATGCGCGC chrI:9108864-9108944 20 7.83e-04 AAATATTTAC AATCGGTC GTGGAGCGCG chrV:246236-246316 60 8.90e-04 ACCCTTGCAC AGTCGATG AGTTTGGTAC chrI:8600983-8601063 45 8.90e-04 CAAACGAAAA TATCGACG ATTTCAGCAA chrIII:13687396-13687476 37 1.13e-03 CCCGTCGTTG AGCCGATA TTGAAGAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATCGATW MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:13727105-13727185 4.6e-05 44_[+1]_28 chrI:354958-355038 4.6e-05 68_[+1]_4 chrX:3467151-3467231 4.6e-05 39_[+1]_33 chrIII:2112809-2112889 4.6e-05 45_[+1]_27 chrV:18179791-18179871 4.6e-05 72_[+1] chrIII:2282728-2282808 4.6e-05 49_[+1]_23 chrII:3956124-3956204 4.6e-05 30_[+1]_42 chrII:2772316-2772396 4.6e-05 15_[+1]_57 chrIV:4597108-4597188 4.6e-05 37_[+1]_35 chrIII:535622-535702 4.6e-05 39_[+1]_33 chrIII:1468589-1468669 4.6e-05 53_[+1]_19 chrI:14096418-14096498 4.6e-05 38_[+1]_34 chrI:10585459-10585539 4.6e-05 59_[+1]_13 chrX:915761-915841 4.6e-05 34_[+1]_38 chrV:19644055-19644135 4.6e-05 11_[+1]_61 chrIV:4799265-4799345 4.6e-05 70_[+1]_2 chrX:8136600-8136680 4.6e-05 42_[+1]_30 chrIV:9635796-9635876 4.6e-05 7_[+1]_65 chrII:7755350-7755430 4.6e-05 36_[+1]_36 chrIII:2112605-2112685 4.6e-05 5_[+1]_67 chrI:4254794-4254874 4.6e-05 34_[+1]_38 chrX:14238441-14238521 4.6e-05 19_[+1]_53 chrV:19303739-19303819 4.6e-05 49_[+1]_23 chrIII:5500108-5500188 4.6e-05 38_[+1]_34 chrII:1042311-1042391 4.6e-05 52_[+1]_20 chrIII:2960862-2960942 4.6e-05 62_[+1]_10 chrII:873202-873282 4.6e-05 52_[+1]_20 chrI:9414469-9414549 4.6e-05 2_[+1]_70 chrI:2334934-2335014 4.6e-05 59_[+1]_13 chrI:15030902-15030982 4.6e-05 36_[+1]_36 chrI:8059583-8059663 4.6e-05 41_[+1]_31 chrIII:8310320-8310400 9.3e-05 32_[+1]_40 chrIV:17162740-17162820 9.3e-05 65_[+1]_7 chrIII:1085146-1085226 9.3e-05 27_[+1]_45 chrX:12854219-12854299 9.3e-05 31_[+1]_41 chrX:826096-826176 9.3e-05 53_[+1]_19 chrX:2090675-2090755 9.3e-05 60_[+1]_12 chrII:4902194-4902274 9.3e-05 35_[+1]_37 chrIII:5879446-5879526 9.3e-05 22_[+1]_50 chrIII:8956395-8956475 9.3e-05 44_[+1]_28 chrI:10374306-10374386 9.3e-05 28_[+1]_44 chrIII:9109407-9109487 9.3e-05 71_[+1]_1 chrII:12756276-12756356 9.3e-05 7_[+1]_65 chrIII:870047-870127 9.3e-05 39_[+1]_33 chrI:13301576-13301656 9.3e-05 55_[+1]_17 chrIV:7168170-7168250 9.3e-05 11_[+1]_61 chrIII:11615014-11615094 9.3e-05 6_[+1]_66 chrI:12659442-12659522 9.3e-05 41_[+1]_31 chrV:16800600-16800680 9.3e-05 8_[+1]_64 chrI:12904048-12904128 9.3e-05 58_[+1]_14 chrI:13260413-13260493 9.3e-05 28_[+1]_44 chrI:11533886-11533966 9.3e-05 3_[+1]_69 chrII:5016318-5016398 9.3e-05 49_[+1]_23 chrII:13315854-13315934 9.3e-05 62_[+1]_10 chrIV:7575306-7575386 9.3e-05 30_[+1]_42 chrX:16240804-16240884 9.3e-05 25_[+1]_47 chrIV:8762639-8762719 0.00011 56_[+1]_16 chrI:9131958-9132038 0.00011 67_[+1]_5 chrV:9346942-9347022 0.00011 6_[+1]_66 chrIV:6601305-6601385 0.00011 46_[+1]_26 chrIII:9538949-9539029 0.00011 30_[+1]_42 chrI:10435471-10435551 0.00011 32_[+1]_40 chrIV:14105732-14105812 0.00011 19_[+1]_53 chrV:19223692-19223772 0.00011 62_[+1]_10 chrII:1725968-1726048 0.00013 48_[+1]_24 chrX:9505121-9505201 0.00013 58_[+1]_14 chrIV:8922136-8922216 0.00013 69_[+1]_3 chrI:6021848-6021928 0.00013 47_[+1]_25 chrV:4487999-4488079 0.00017 25_[+1]_47 chrII:960445-960525 0.00017 31_[+1]_41 chrV:6044027-6044107 0.00017 55_[+1]_17 chrV:16742361-16742441 0.00017 45_[+1]_27 chrV:5239463-5239543 0.00017 44_[+1]_28 chrX:8605229-8605309 0.00017 48_[+1]_24 chrII:2770941-2771021 0.00017 9_[+1]_63 chrIII:5906196-5906276 0.00017 26_[+1]_46 chrI:8103106-8103186 0.00017 43_[+1]_29 chrI:8512448-8512528 0.00017 8_[+1]_64 chrX:13858855-13858935 0.00017 65_[+1]_7 chrIII:2234409-2234489 0.00018 47_[+1]_25 chrX:371883-371963 0.00018 34_[+1]_38 chrX:8791953-8792033 0.00024 56_[+1]_16 chrIII:188600-188680 0.00025 32_[+1]_40 chrX:14243700-14243780 0.00025 2_[+1]_70 chrII:7364168-7364248 0.00025 46_[+1]_26 chrX:2452883-2452963 0.00025 19_[+1]_53 chrX:13598164-13598244 0.00033 2_[+1]_70 chrV:2067010-2067090 0.00033 [+1]_72 chrII:8222928-8223008 0.00033 48_[+1]_24 chrX:6263367-6263447 0.00033 27_[+1]_45 chrX:17714536-17714616 0.00033 34_[+1]_38 chrIV:17333641-17333721 0.00033 [+1]_72 chrV:6494821-6494901 0.00033 36_[+1]_36 chrIV:7561901-7561981 0.00033 2_[+1]_70 chrX:8911249-8911329 0.00033 4_[+1]_68 chrIII:2263128-2263208 0.00033 66_[+1]_6 chrIV:5076575-5076655 0.00036 18_[+1]_54 chrIV:12158044-12158124 0.00036 27_[+1]_45 chrII:10662804-10662884 0.0004 49_[+1]_23 chrX:12989334-12989414 0.0004 31_[+1]_41 chrV:12191151-12191231 0.00048 64_[+1]_8 chrV:14415310-14415390 0.00048 48_[+1]_24 chrII:5649585-5649665 0.00048 27_[+1]_45 chrX:14589206-14589286 0.00048 33_[+1]_39 chrII:4935673-4935753 0.00048 69_[+1]_3 chrV:18021694-18021774 0.00048 47_[+1]_25 chrIII:9829825-9829905 0.00048 27_[+1]_45 chrV:9729902-9729982 0.00048 [+1]_72 chrII:5667680-5667760 0.00048 6_[+1]_66 chrV:18689810-18689890 0.00048 23_[+1]_49 chrII:1663712-1663792 0.00048 67_[+1]_5 chrII:15076937-15077017 0.00048 11_[+1]_61 chrI:10822541-10822621 0.00049 68_[+1]_4 chrIII:7972073-7972153 0.00056 54_[+1]_18 chrIV:8289715-8289795 0.00056 24_[+1]_48 chrI:4299626-4299706 0.00056 7_[+1]_65 chrI:7084575-7084655 0.00059 [+1]_72 chrIV:8819592-8819672 0.00059 27_[+1]_45 chrIII:5959235-5959315 0.00059 53_[+1]_19 chrIV:12467918-12467998 0.00059 70_[+1]_2 chrII:11979860-11979940 0.00067 69_[+1]_3 chrX:2857235-2857315 0.00067 25_[+1]_47 chrI:9108864-9108944 0.00078 19_[+1]_53 chrV:246236-246316 0.00089 59_[+1]_13 chrI:8600983-8601063 0.00089 44_[+1]_28 chrIII:13687396-13687476 0.0011 36_[+1]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATCGATW MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WATCGATW width=8 seqs=126 chrX:13727105-13727185 ( 45) TATCGATT 1 chrI:354958-355038 ( 69) TATCGATT 1 chrX:3467151-3467231 ( 40) TATCGATT 1 chrIII:2112809-2112889 ( 46) TATCGATT 1 chrV:18179791-18179871 ( 73) TATCGATT 1 chrIII:2282728-2282808 ( 50) TATCGATT 1 chrII:3956124-3956204 ( 31) TATCGATT 1 chrII:2772316-2772396 ( 16) TATCGATT 1 chrIV:4597108-4597188 ( 38) TATCGATT 1 chrIII:535622-535702 ( 40) TATCGATT 1 chrIII:1468589-1468669 ( 54) TATCGATT 1 chrI:14096418-14096498 ( 39) TATCGATT 1 chrI:10585459-10585539 ( 60) TATCGATA 1 chrX:915761-915841 ( 35) TATCGATT 1 chrV:19644055-19644135 ( 12) TATCGATT 1 chrIV:4799265-4799345 ( 71) TATCGATT 1 chrX:8136600-8136680 ( 43) TATCGATA 1 chrIV:9635796-9635876 ( 8) TATCGATT 1 chrII:7755350-7755430 ( 37) TATCGATT 1 chrIII:2112605-2112685 ( 6) TATCGATT 1 chrI:4254794-4254874 ( 35) TATCGATT 1 chrX:14238441-14238521 ( 20) TATCGATT 1 chrV:19303739-19303819 ( 50) TATCGATT 1 chrIII:5500108-5500188 ( 39) TATCGATT 1 chrII:1042311-1042391 ( 53) TATCGATT 1 chrIII:2960862-2960942 ( 63) TATCGATT 1 chrII:873202-873282 ( 53) TATCGATT 1 chrI:9414469-9414549 ( 3) TATCGATT 1 chrI:2334934-2335014 ( 60) TATCGATT 1 chrI:15030902-15030982 ( 37) TATCGATT 1 chrI:8059583-8059663 ( 42) TATCGATT 1 chrIII:8310320-8310400 ( 33) AATCGATA 1 chrIV:17162740-17162820 ( 66) AATCGATA 1 chrIII:1085146-1085226 ( 28) AATCGATA 1 chrX:12854219-12854299 ( 32) AATCGATA 1 chrX:826096-826176 ( 54) AATCGATA 1 chrX:2090675-2090755 ( 61) AATCGATA 1 chrII:4902194-4902274 ( 36) AATCGATA 1 chrIII:5879446-5879526 ( 23) AATCGATA 1 chrIII:8956395-8956475 ( 45) AATCGATA 1 chrI:10374306-10374386 ( 29) AATCGATT 1 chrIII:9109407-9109487 ( 72) AATCGATA 1 chrII:12756276-12756356 ( 8) AATCGATA 1 chrIII:870047-870127 ( 40) AATCGATT 1 chrI:13301576-13301656 ( 56) AATCGATA 1 chrIV:7168170-7168250 ( 12) AATCGATT 1 chrIII:11615014-11615094 ( 7) AATCGATA 1 chrI:12659442-12659522 ( 42) AATCGATT 1 chrV:16800600-16800680 ( 9) AATCGATA 1 chrI:12904048-12904128 ( 59) AATCGATA 1 chrI:13260413-13260493 ( 29) AATCGATA 1 chrI:11533886-11533966 ( 4) AATCGATA 1 chrII:5016318-5016398 ( 50) AATCGATA 1 chrII:13315854-13315934 ( 63) AATCGATA 1 chrIV:7575306-7575386 ( 31) AATCGATA 1 chrX:16240804-16240884 ( 26) AATCGATA 1 chrIV:8762639-8762719 ( 57) TATCGATC 1 chrI:9131958-9132038 ( 68) TATCGATC 1 chrV:9346942-9347022 ( 7) TATCGATC 1 chrIV:6601305-6601385 ( 47) TATCGATC 1 chrIII:9538949-9539029 ( 31) TATCGATC 1 chrI:10435471-10435551 ( 33) TATCGATC 1 chrIV:14105732-14105812 ( 20) TATCGATC 1 chrV:19223692-19223772 ( 63) TATCGATC 1 chrII:1725968-1726048 ( 49) AATCGATC 1 chrX:9505121-9505201 ( 59) AATCGATC 1 chrIV:8922136-8922216 ( 70) AATCGATC 1 chrI:6021848-6021928 ( 48) AATCGATC 1 chrV:4487999-4488079 ( 26) GATCGATA 1 chrII:960445-960525 ( 32) GATCGATA 1 chrV:6044027-6044107 ( 56) GATCGATA 1 chrV:16742361-16742441 ( 46) GATCGATT 1 chrV:5239463-5239543 ( 45) GATCGATA 1 chrX:8605229-8605309 ( 49) GATCGATA 1 chrII:2770941-2771021 ( 10) GATCGATA 1 chrIII:5906196-5906276 ( 27) GATCGATA 1 chrI:8103106-8103186 ( 44) GATCGATA 1 chrI:8512448-8512528 ( 9) GATCGATT 1 chrX:13858855-13858935 ( 66) GATCGATA 1 chrIII:2234409-2234489 ( 48) GATCGATC 1 chrX:371883-371963 ( 35) GATCGATC 1 chrX:8791953-8792033 ( 57) TGTCGATT 1 chrIII:188600-188680 ( 33) AATCGATG 1 chrX:14243700-14243780 ( 3) AATCGATG 1 chrII:7364168-7364248 ( 47) AATCGATG 1 chrX:2452883-2452963 ( 20) AATCGATG 1 chrX:13598164-13598244 ( 3) TATCGACT 1 chrV:2067010-2067090 ( 1) AGTCGATA 1 chrII:8222928-8223008 ( 49) AGTCGATA 1 chrX:6263367-6263447 ( 28) AGTCGATA 1 chrX:17714536-17714616 ( 35) AGTCGATA 1 chrIV:17333641-17333721 ( 1) TATCGACT 1 chrV:6494821-6494901 ( 37) AGTCGATA 1 chrIV:7561901-7561981 ( 3) AGTCGATA 1 chrX:8911249-8911329 ( 5) TATCGACT 1 chrIII:2263128-2263208 ( 67) AGTCGATA 1 chrIV:5076575-5076655 ( 19) TACCGATT 1 chrIV:12158044-12158124 ( 28) TACCGATA 1 chrII:10662804-10662884 ( 50) AATCGACT 1 chrX:12989334-12989414 ( 32) AATCGACT 1 chrV:12191151-12191231 ( 65) TATCGGTA 1 chrV:14415310-14415390 ( 49) TATCGGTT 1 chrII:5649585-5649665 ( 28) AACCGATA 1 chrX:14589206-14589286 ( 34) TATCGGTT 1 chrII:4935673-4935753 ( 70) TATCGGTT 1 chrV:18021694-18021774 ( 48) AACCGATA 1 chrIII:9829825-9829905 ( 28) TATCGGTT 1 chrV:9729902-9729982 ( 1) AACCGATA 1 chrII:5667680-5667760 ( 7) AACCGATA 1 chrV:18689810-18689890 ( 24) AACCGATA 1 chrII:1663712-1663792 ( 68) TATCGGTT 1 chrII:15076937-15077017 ( 12) AACCGATA 1 chrI:10822541-10822621 ( 69) TGTCGATC 1 chrIII:7972073-7972153 ( 55) CATCGATT 1 chrIV:8289715-8289795 ( 25) CATCGATA 1 chrI:4299626-4299706 ( 8) CATCGATT 1 chrI:7084575-7084655 ( 1) TATCGACC 1 chrIV:8819592-8819672 ( 28) TATCGACC 1 chrIII:5959235-5959315 ( 54) TATCGACC 1 chrIV:12467918-12467998 ( 71) TATCGACC 1 chrII:11979860-11979940 ( 70) GGTCGATA 1 chrX:2857235-2857315 ( 26) GGTCGATA 1 chrI:9108864-9108944 ( 20) AATCGGTC 1 chrV:246236-246316 ( 60) AGTCGATG 1 chrI:8600983-8601063 ( 45) TATCGACG 1 chrIII:13687396-13687476 ( 37) AGCCGATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATCGATW MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.90467 E= 1.1e-080 52 -321 -89 71 167 -1362 -110 -1362 -1362 -163 -1362 175 -1362 218 -1362 -1362 -1362 -1362 218 -1362 174 -1362 -199 -1362 -1362 -148 -1362 174 52 -48 -221 49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATCGATW MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 126 E= 1.1e-080 0.404762 0.023810 0.119048 0.452381 0.896825 0.000000 0.103175 0.000000 0.000000 0.071429 0.000000 0.928571 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.944444 0.000000 0.055556 0.000000 0.000000 0.079365 0.000000 0.920635 0.404762 0.158730 0.047619 0.388889 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WATCGATW MEME-1 regular expression -------------------------------------------------------------------------------- [TA]ATCGAT[AT] -------------------------------------------------------------------------------- Time 6.20 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCGTCT MEME-2 width = 8 sites = 24 llr = 231 E-value = 1.1e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::::1: pos.-specific C a:18::8: probability G ::9:a::: matrix T :a:2:a:a bits 2.2 * 2.0 * ** * 1.7 * * ** * 1.5 ****** * Relative 1.3 ******** Entropy 1.1 ******** (13.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGCGTCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:10597684-10597764 27 1.12e-05 TCTTTTGTGT CTGCGTCT CCAATTTCTT chrV:12191151-12191231 6 1.12e-05 TTTCT CTGCGTCT CTTCGTCTCA chrII:5081348-5081428 38 1.12e-05 CAGTCTTTCT CTGCGTCT CCTCTTCTTG chrII:2145907-2145987 11 1.12e-05 CTTAACCTGT CTGCGTCT CAATGGAAGA chrI:12065401-12065481 12 1.12e-05 CTTACACCGT CTGCGTCT CTCACCCCAT chrIII:4515383-4515463 17 1.12e-05 TTGCGGGTGT CTGCGTCT CTTGGTCTTT chrII:4935673-4935753 2 1.12e-05 G CTGCGTCT CCGTTCTCTC chrIII:7911792-7911872 11 1.12e-05 GCCTAACTAT CTGCGTCT CTTGATTTTC chrI:10822541-10822621 29 1.12e-05 CCTCAATAAC CTGCGTCT CTTCCTCTCC chrII:873202-873282 2 1.12e-05 T CTGCGTCT ATGTTCCCTC chrII:15076937-15077017 25 1.12e-05 CGATAATTCT CTGCGTCT CCACTCTCTC chrIV:12467918-12467998 26 1.12e-05 TCTCTTCAGT CTGCGTCT CTCATTTCGA chrIII:5900819-5900899 31 1.12e-05 ACCTGTCAGT CTGCGTCT CTAACTCTTC chrIII:2126034-2126114 37 2.52e-05 CTAAGGTCAT CTGTGTCT CTCACACATT chrIII:4274753-4274833 37 2.52e-05 ACGACGTTGT CTGTGTCT CCGTGCCACT chrX:8416859-8416939 70 2.52e-05 TGCAACATCT CTGTGTCT CTT chrII:159478-159558 35 3.65e-05 TCTACCTTCT CTCCGTCT TACATAGTGC chrI:6166783-6166863 24 5.08e-05 CTATGACTGT CTGCGTAT CTTCCATTCA chrIV:8146351-8146431 38 5.08e-05 GTGTAACCTC CTGCGTAT CTCAATCACG chrI:310863-310943 66 6.20e-05 CTACAGTTTG CTGCGTGT AAGCGCG chrIV:10085848-10085928 20 8.46e-05 CTCGCGAGTG CAGCGTCT CTGTAATGTA chrIII:13687396-13687476 60 8.46e-05 GAAAATGTGA GTGCGTCT GCTGCGCATC chrV:11281478-11281558 5 9.86e-05 ATAT CTGCGTTT CTCATTATCC chrIII:5958307-5958387 59 1.13e-04 GTCTTCCATA CTCTGTCT TTGAGTGGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:10597684-10597764 1.1e-05 26_[+2]_46 chrV:12191151-12191231 1.1e-05 5_[+2]_67 chrII:5081348-5081428 1.1e-05 37_[+2]_35 chrII:2145907-2145987 1.1e-05 10_[+2]_62 chrI:12065401-12065481 1.1e-05 11_[+2]_61 chrIII:4515383-4515463 1.1e-05 16_[+2]_56 chrII:4935673-4935753 1.1e-05 1_[+2]_71 chrIII:7911792-7911872 1.1e-05 10_[+2]_62 chrI:10822541-10822621 1.1e-05 28_[+2]_44 chrII:873202-873282 1.1e-05 1_[+2]_71 chrII:15076937-15077017 1.1e-05 24_[+2]_48 chrIV:12467918-12467998 1.1e-05 25_[+2]_47 chrIII:5900819-5900899 1.1e-05 30_[+2]_42 chrIII:2126034-2126114 2.5e-05 36_[+2]_36 chrIII:4274753-4274833 2.5e-05 36_[+2]_36 chrX:8416859-8416939 2.5e-05 69_[+2]_3 chrII:159478-159558 3.6e-05 34_[+2]_38 chrI:6166783-6166863 5.1e-05 23_[+2]_49 chrIV:8146351-8146431 5.1e-05 37_[+2]_35 chrI:310863-310943 6.2e-05 65_[+2]_7 chrIV:10085848-10085928 8.5e-05 19_[+2]_53 chrIII:13687396-13687476 8.5e-05 59_[+2]_13 chrV:11281478-11281558 9.9e-05 4_[+2]_68 chrIII:5958307-5958387 0.00011 58_[+2]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCGTCT width=8 seqs=24 chrX:10597684-10597764 ( 27) CTGCGTCT 1 chrV:12191151-12191231 ( 6) CTGCGTCT 1 chrII:5081348-5081428 ( 38) CTGCGTCT 1 chrII:2145907-2145987 ( 11) CTGCGTCT 1 chrI:12065401-12065481 ( 12) CTGCGTCT 1 chrIII:4515383-4515463 ( 17) CTGCGTCT 1 chrII:4935673-4935753 ( 2) CTGCGTCT 1 chrIII:7911792-7911872 ( 11) CTGCGTCT 1 chrI:10822541-10822621 ( 29) CTGCGTCT 1 chrII:873202-873282 ( 2) CTGCGTCT 1 chrII:15076937-15077017 ( 25) CTGCGTCT 1 chrIV:12467918-12467998 ( 26) CTGCGTCT 1 chrIII:5900819-5900899 ( 31) CTGCGTCT 1 chrIII:2126034-2126114 ( 37) CTGTGTCT 1 chrIII:4274753-4274833 ( 37) CTGTGTCT 1 chrX:8416859-8416939 ( 70) CTGTGTCT 1 chrII:159478-159558 ( 35) CTCCGTCT 1 chrI:6166783-6166863 ( 24) CTGCGTAT 1 chrIV:8146351-8146431 ( 38) CTGCGTAT 1 chrI:310863-310943 ( 66) CTGCGTGT 1 chrIV:10085848-10085928 ( 20) CAGCGTCT 1 chrIII:13687396-13687476 ( 60) GTGCGTCT 1 chrV:11281478-11281558 ( 5) CTGCGTTT 1 chrIII:5958307-5958387 ( 59) CTCTGTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0167 E= 1.1e-008 -1123 212 -240 -1123 -275 -1123 -1123 179 -1123 -141 206 -1123 -1123 191 -1123 -73 -1123 -1123 218 -1123 -1123 -1123 -1123 185 -176 191 -240 -273 -1123 -1123 -1123 185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 1.1e-008 0.000000 0.958333 0.041667 0.000000 0.041667 0.000000 0.000000 0.958333 0.000000 0.083333 0.916667 0.000000 0.000000 0.833333 0.000000 0.166667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.083333 0.833333 0.041667 0.041667 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-2 regular expression -------------------------------------------------------------------------------- CTGCGTCT -------------------------------------------------------------------------------- Time 9.71 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCGCTY MEME-3 width = 8 sites = 44 llr = 361 E-value = 1.6e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCGCTY MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::1:1: pos.-specific C :9:a:7:7 probability G 9:a:9:3: matrix T :1:::363 bits 2.2 ** 2.0 ** 1.7 *** 1.5 ***** Relative 1.3 ***** Entropy 1.1 ****** * (11.8 bits) 0.9 ****** * 0.7 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGCGCTC consensus TGT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCTY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:15034085-15034165 43 7.13e-06 TTTGTTTTTC GCGCGCTC TCCTCCTAAT chrIV:3694815-3694895 20 7.13e-06 AAAAATGCAA GCGCGCTC TACCGCACAC chrX:371883-371963 22 7.13e-06 TTCATCTGGT GCGCGCTC TTTTTGATCG chrI:14708125-14708205 43 1.28e-05 TGCCATCCCC GCGCGCGC AGTGGGGATT chrIII:11719561-11719641 62 1.28e-05 CTGCTCATTT GCGCGCGC ATTCAAATTT chrIII:12368473-12368553 28 1.28e-05 GATTGAAAAA GCGCGCGC ACCCTGACAC chrIII:8956395-8956475 23 1.28e-05 AGAGAAAAAA GCGCGCGC ACTCACGCTG chrI:5422331-5422411 42 1.28e-05 GAGAAGCAGC GCGCGCGC ACACATCTAA chrV:10813872-10813952 52 1.28e-05 TGCATCTGGT GCGCGCGC CGTTCAAAAT chrX:2857235-2857315 42 1.28e-05 TAGTATGCGC GCGCGCGC ACCAAAACAC chrX:10391354-10391434 61 2.18e-05 CGCACTTTCC GCGCGCTT TCTTTTCTCT chrV:16742361-16742441 67 3.07e-05 AGCGCACATT GCGCGTTC CACCTT chrI:10374306-10374386 50 3.07e-05 TACAAATACT GCGCGTTC TGATCTCCTA chrI:6021848-6021928 16 3.07e-05 TCTTTTTCAG GCGCGTTC ATTTCTTCGT chrX:13238534-13238614 46 5.22e-05 TGCCAAGTGT GCGCGTGC GTATGCGTTG chrII:7755350-7755430 26 5.22e-05 GGCTCGCAAT GCGCGCAC GAATATCGAT chrIII:1085146-1085226 15 6.34e-05 CAATTAAAAC GCGCGTTT TAAAAAATCG chrX:13727105-13727185 9 6.34e-05 GCGATGGA GCGCGTTT GCATTTCTTA chrX:8737189-8737269 11 6.34e-05 TTGCATTAGA GCGCGTTT GAACGGTTTG chrIV:13206057-13206137 36 6.34e-05 GGTCAATGGA GCGCGTTT GCTCTCACAA chrX:14589206-14589286 54 6.34e-05 TGCCAATGGA GCGCGTTT GGCACACGCG chrII:4902194-4902274 57 6.34e-05 TCGTGTTGGA GCGCGTTT GCAACCAGTG chrIII:428618-428698 67 6.34e-05 AGCGTTTCCC GCGCGTTT GAAATT chrIV:17335184-17335264 42 6.34e-05 TCGCGACGGA GCGCGTTT GCCATGTGAA chrIV:17162740-17162820 52 7.25e-05 CATACGCGAC GCGCACTC AAAATAAATC chrV:7978953-7979033 7 7.25e-05 GCTTAT GCGCACTC ACAGTAGTAA chrI:8600983-8601063 20 7.82e-05 AGAAGAGAAA GCGCGCCC CACCGTACAA chrX:11662734-11662814 4 1.05e-04 TTC GCGCGCAT ATCATAACTG chrIV:10085848-10085928 39 1.05e-04 TGTAATGTAA GTGCGCTC CAATCACAAT chrX:8791953-8792033 35 1.05e-04 AACCCAGCGA GTGCGCTC TACTGCACTA chrIV:7575306-7575386 70 1.05e-04 TTCAAAGCAG GCGCGCAT AGA chrX:14486671-14486751 69 1.22e-04 GCGATGTCTA GCGCACGC CTCA chrX:7100411-7100491 51 1.40e-04 TCTCAATAGA GCGCACTT GTACAGAGAC chrII:4935673-4935753 36 1.40e-04 ATCCAATGGA GCGCACTT ACATTAAATT chrX:8911249-8911329 25 1.40e-04 ATGCGACTAT GTGCGCGC AAATGCGCTC chrIII:12626399-12626479 37 1.68e-04 ACCAATGCAA TCGCGCTC CACTGCTAAT chrI:3481529-3481609 18 1.68e-04 GATTACGCAA TCGCGCTC CATGGACAAC chrI:12426850-12426930 43 1.84e-04 GGTTTTGCAA ACGCGCTC CGTTAAACAC chrIV:4799265-4799345 43 1.84e-04 GAGTGTGCAG ACGCGCTC TACTGAACAA chrI:10822541-10822621 13 1.84e-04 TTCTCTTTTT GCGCGTCC TCAATAACCT chrII:3008644-3008724 40 2.18e-04 TCTCTTGTTC GCGCGTAT TTTTTCTCAT chrX:11297135-11297215 16 2.34e-04 GCAGAGCGGT CCGCGCTC ATCGACCGTA chrII:11537349-11537429 10 2.59e-04 CGCGCGCGA GCGCACAC TGCACACCAT chrII:11979860-11979940 59 2.76e-04 TGTGCAACGC GTGCGCGT CGCGGTCGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCTY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:15034085-15034165 7.1e-06 42_[+3]_30 chrIV:3694815-3694895 7.1e-06 19_[+3]_53 chrX:371883-371963 7.1e-06 21_[+3]_51 chrI:14708125-14708205 1.3e-05 42_[+3]_30 chrIII:11719561-11719641 1.3e-05 61_[+3]_11 chrIII:12368473-12368553 1.3e-05 27_[+3]_45 chrIII:8956395-8956475 1.3e-05 22_[+3]_50 chrI:5422331-5422411 1.3e-05 41_[+3]_31 chrV:10813872-10813952 1.3e-05 51_[+3]_21 chrX:2857235-2857315 1.3e-05 41_[+3]_31 chrX:10391354-10391434 2.2e-05 60_[+3]_12 chrV:16742361-16742441 3.1e-05 66_[+3]_6 chrI:10374306-10374386 3.1e-05 49_[+3]_23 chrI:6021848-6021928 3.1e-05 15_[+3]_57 chrX:13238534-13238614 5.2e-05 45_[+3]_27 chrII:7755350-7755430 5.2e-05 25_[+3]_47 chrIII:1085146-1085226 6.3e-05 14_[+3]_58 chrX:13727105-13727185 6.3e-05 8_[+3]_64 chrX:8737189-8737269 6.3e-05 10_[+3]_62 chrIV:13206057-13206137 6.3e-05 35_[+3]_37 chrX:14589206-14589286 6.3e-05 53_[+3]_19 chrII:4902194-4902274 6.3e-05 56_[+3]_16 chrIII:428618-428698 6.3e-05 66_[+3]_6 chrIV:17335184-17335264 6.3e-05 41_[+3]_31 chrIV:17162740-17162820 7.3e-05 51_[+3]_21 chrV:7978953-7979033 7.3e-05 6_[+3]_66 chrI:8600983-8601063 7.8e-05 19_[+3]_53 chrX:11662734-11662814 0.00011 3_[+3]_69 chrIV:10085848-10085928 0.00011 38_[+3]_34 chrX:8791953-8792033 0.00011 34_[+3]_38 chrIV:7575306-7575386 0.00011 69_[+3]_3 chrX:14486671-14486751 0.00012 68_[+3]_4 chrX:7100411-7100491 0.00014 50_[+3]_22 chrII:4935673-4935753 0.00014 35_[+3]_37 chrX:8911249-8911329 0.00014 24_[+3]_48 chrIII:12626399-12626479 0.00017 36_[+3]_36 chrI:3481529-3481609 0.00017 17_[+3]_55 chrI:12426850-12426930 0.00018 42_[+3]_30 chrIV:4799265-4799345 0.00018 42_[+3]_30 chrI:10822541-10822621 0.00018 12_[+3]_60 chrII:3008644-3008724 0.00022 39_[+3]_33 chrX:11297135-11297215 0.00023 15_[+3]_57 chrII:11537349-11537429 0.00026 9_[+3]_63 chrII:11979860-11979940 0.00028 58_[+3]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCTY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCGCTY width=8 seqs=44 chrI:15034085-15034165 ( 43) GCGCGCTC 1 chrIV:3694815-3694895 ( 20) GCGCGCTC 1 chrX:371883-371963 ( 22) GCGCGCTC 1 chrI:14708125-14708205 ( 43) GCGCGCGC 1 chrIII:11719561-11719641 ( 62) GCGCGCGC 1 chrIII:12368473-12368553 ( 28) GCGCGCGC 1 chrIII:8956395-8956475 ( 23) GCGCGCGC 1 chrI:5422331-5422411 ( 42) GCGCGCGC 1 chrV:10813872-10813952 ( 52) GCGCGCGC 1 chrX:2857235-2857315 ( 42) GCGCGCGC 1 chrX:10391354-10391434 ( 61) GCGCGCTT 1 chrV:16742361-16742441 ( 67) GCGCGTTC 1 chrI:10374306-10374386 ( 50) GCGCGTTC 1 chrI:6021848-6021928 ( 16) GCGCGTTC 1 chrX:13238534-13238614 ( 46) GCGCGTGC 1 chrII:7755350-7755430 ( 26) GCGCGCAC 1 chrIII:1085146-1085226 ( 15) GCGCGTTT 1 chrX:13727105-13727185 ( 9) GCGCGTTT 1 chrX:8737189-8737269 ( 11) GCGCGTTT 1 chrIV:13206057-13206137 ( 36) GCGCGTTT 1 chrX:14589206-14589286 ( 54) GCGCGTTT 1 chrII:4902194-4902274 ( 57) GCGCGTTT 1 chrIII:428618-428698 ( 67) GCGCGTTT 1 chrIV:17335184-17335264 ( 42) GCGCGTTT 1 chrIV:17162740-17162820 ( 52) GCGCACTC 1 chrV:7978953-7979033 ( 7) GCGCACTC 1 chrI:8600983-8601063 ( 20) GCGCGCCC 1 chrX:11662734-11662814 ( 4) GCGCGCAT 1 chrIV:10085848-10085928 ( 39) GTGCGCTC 1 chrX:8791953-8792033 ( 35) GTGCGCTC 1 chrIV:7575306-7575386 ( 70) GCGCGCAT 1 chrX:14486671-14486751 ( 69) GCGCACGC 1 chrX:7100411-7100491 ( 51) GCGCACTT 1 chrII:4935673-4935753 ( 36) GCGCACTT 1 chrX:8911249-8911329 ( 25) GTGCGCGC 1 chrIII:12626399-12626479 ( 37) TCGCGCTC 1 chrI:3481529-3481609 ( 18) TCGCGCTC 1 chrI:12426850-12426930 ( 43) ACGCGCTC 1 chrIV:4799265-4799345 ( 43) ACGCGCTC 1 chrI:10822541-10822621 ( 13) GCGCGTCC 1 chrII:3008644-3008724 ( 40) GCGCGTAT 1 chrX:11297135-11297215 ( 16) CCGCGCTC 1 chrII:11537349-11537429 ( 10) GCGCACAC 1 chrII:11979860-11979940 ( 59) GTGCGCGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCTY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2284 E= 1.6e-008 -263 -328 201 -260 -1210 204 -1210 -160 -1210 -1210 218 -1210 -1210 218 -1210 -1210 -105 -1210 197 -1210 -1210 162 -1210 20 -131 -228 18 110 -1210 158 -1210 30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCTY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 1.6e-008 0.045455 0.022727 0.886364 0.045455 0.000000 0.909091 0.000000 0.090909 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.136364 0.000000 0.863636 0.000000 0.000000 0.681818 0.000000 0.318182 0.113636 0.045455 0.250000 0.590909 0.000000 0.659091 0.000000 0.340909 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGCTY MEME-3 regular expression -------------------------------------------------------------------------------- GCGCG[CT][TG][CT] -------------------------------------------------------------------------------- Time 13.19 secs. ******************************************************************************** ******************************************************************************** MOTIF AGAGASRC MEME-4 width = 8 sites = 44 llr = 364 E-value = 1.8e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAGASRC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 9:a:a:42 pos.-specific C :::::616 probability G 1a:a:452 matrix T :::::::: bits 2.2 * * 2.0 * * 1.7 **** 1.5 **** Relative 1.3 ****** Entropy 1.1 ****** (11.9 bits) 0.9 ****** * 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGAGACGC consensus GAG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGASRC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:5649585-5649665 14 1.18e-05 TTACGAAACG AGAGACGC AGAGAAAACC chrII:11537349-11537429 63 1.18e-05 TGTGAAATGA AGAGACGC CGAGTGGACA chrI:9581590-9581670 1 1.18e-05 . AGAGACGC AGAGAAAAAG chrII:7364168-7364248 33 1.18e-05 GAAAGAGGAA AGAGACGC AGAGGGAATC chrIII:4502677-4502757 49 1.18e-05 ATTGAGAGGT AGAGACGC AGGAAAATAT chrV:20249843-20249923 4 1.18e-05 gtg agagacgc cagagaaaac chrIV:17333641-17333721 65 1.18e-05 TATAGAGTGA AGAGACGC AGCTATTG chrI:4299626-4299706 59 1.18e-05 TATTATTAAA AGAGACGC AGACAGTAGG chrIII:13313941-13314021 43 1.18e-05 TGTTTTGAAA AGAGACGC AGAGAACGGT chrI:2829247-2829327 22 1.18e-05 TGGGATTCGG AGAGACGC AGATGGTGTT chrII:1663712-1663792 13 1.18e-05 ATCAGTACTC AGAGACGC AGACGGCAAA chrIII:5958307-5958387 36 1.18e-05 CGCAGCGCGG AGAGACGC GTCGCGTCTT chrX:2090675-2090755 25 2.69e-05 GAGACGGACG AGAGACAC CGTAATGCCA chrV:1570733-1570813 46 2.69e-05 CAACGCGAGA AGAGACAC CCCCCACAGA chrX:7788139-7788219 39 5.38e-05 CAAGAGGGAC AGAGAGAC CAAGAAAACG chrV:6044027-6044107 33 5.38e-05 TGTTTACTTT AGAGAGAC CACGTAACCG chrIII:9109407-9109487 63 5.38e-05 AATTAGAGAA AGAGAGAC TAATCGATAT chrI:10585459-10585539 27 5.38e-05 GGTGAACATg agagagac agtgagaggg chrX:2368586-2368666 23 5.38e-05 TGCGGGTTGA AGAGAGAC AGACGTCACT chrIV:5169571-5169651 51 5.38e-05 TGTAAGATGA AGAGAGAC GAGAGAAACA chrIII:87331-87411 34 6.56e-05 TGGGGAAGTG AGAGACGG AGCTTGTGTA chrX:6622929-6623009 61 8.07e-05 AATTATTGCG AGAGACAG TGATGGCCAA chrI:11169668-11169748 30 8.07e-05 tAAGAGAGAT AGAGACAG AGATTGTTAT chrIV:8762639-8762719 18 9.25e-05 GATGGGGGAC AGAGAGGG AGAGGGTTAA chrI:11554580-11554660 28 9.25e-05 TTGGAAAGTG AGAGAGGG TGGCAGAGAA chrI:15041556-15041636 70 9.25e-05 ATAGAGCGAT AGAGAGGG CAA chrV:1556385-1556465 58 1.08e-04 GGATAACAGG AGAGACGA GAAACAAAGG chrI:13850939-13851019 4 1.08e-04 CAC AGAGACGA TTGTCAGAAA chrII:2145907-2145987 69 1.19e-04 TTAGTGTGTA AGAGACCC CCTC chrI:5422331-5422411 27 1.35e-04 ACGTGAATAG AGAGAGAG AAGCAGCGCG chrV:12065483-12065563 9 1.35e-04 AATGTgag agagagag tgagggggaa chrX:8136600-8136680 71 1.54e-04 GTGACCCCGA AGAGACAA AT chrIII:11481564-11481644 68 1.81e-04 GGTGATCCGA AGAGAGCC GCAGA chrX:2452883-2452963 69 1.90e-04 AGAGATGAGG GGAGACGC GATC chrV:7978953-7979033 46 2.09e-04 AAATAGAGAT AGAGAGAA AGAGAACGAA chrIII:9950232-9950312 62 2.09e-04 GAGGCAGCGA AGAGAGAA GAAATGACCA chrI:6073625-6073705 15 2.09e-04 agagaatatg agagagaa agagagaaag chrX:14486671-14486751 30 2.09e-04 ATGTCGGCGG AGAGAGAA AGGTGCGTTC chrX:7100411-7100491 63 2.33e-04 GCACTTGTAC AGAGACCG TCGCGAGATT chrII:11535680-11535760 29 2.33e-04 ATTGTGCATG GGAGACAC ATCGTCTGTT chrV:18179791-18179871 61 2.33e-04 CAAAAGAAAA GGAGACAC ATCTTATCGA chrIV:13206057-13206137 59 2.54e-04 CACAATTCTT TGAGACGC TGCCGCTCGA chrIV:7575306-7575386 48 2.54e-04 AATTAATCCT TGAGACGC AGTCTTCAAA chrX:11297135-11297215 67 2.77e-04 GCACACagtg agagagcg agagac -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGASRC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:5649585-5649665 1.2e-05 13_[+4]_59 chrII:11537349-11537429 1.2e-05 62_[+4]_10 chrI:9581590-9581670 1.2e-05 [+4]_72 chrII:7364168-7364248 1.2e-05 32_[+4]_40 chrIII:4502677-4502757 1.2e-05 48_[+4]_24 chrV:20249843-20249923 1.2e-05 3_[+4]_69 chrIV:17333641-17333721 1.2e-05 64_[+4]_8 chrI:4299626-4299706 1.2e-05 58_[+4]_14 chrIII:13313941-13314021 1.2e-05 42_[+4]_30 chrI:2829247-2829327 1.2e-05 21_[+4]_51 chrII:1663712-1663792 1.2e-05 12_[+4]_60 chrIII:5958307-5958387 1.2e-05 35_[+4]_37 chrX:2090675-2090755 2.7e-05 24_[+4]_48 chrV:1570733-1570813 2.7e-05 45_[+4]_27 chrX:7788139-7788219 5.4e-05 38_[+4]_34 chrV:6044027-6044107 5.4e-05 32_[+4]_40 chrIII:9109407-9109487 5.4e-05 62_[+4]_10 chrI:10585459-10585539 5.4e-05 26_[+4]_46 chrX:2368586-2368666 5.4e-05 22_[+4]_50 chrIV:5169571-5169651 5.4e-05 50_[+4]_22 chrIII:87331-87411 6.6e-05 33_[+4]_39 chrX:6622929-6623009 8.1e-05 60_[+4]_12 chrI:11169668-11169748 8.1e-05 29_[+4]_43 chrIV:8762639-8762719 9.3e-05 17_[+4]_55 chrI:11554580-11554660 9.3e-05 27_[+4]_45 chrI:15041556-15041636 9.3e-05 69_[+4]_3 chrV:1556385-1556465 0.00011 57_[+4]_15 chrI:13850939-13851019 0.00011 3_[+4]_69 chrII:2145907-2145987 0.00012 68_[+4]_4 chrI:5422331-5422411 0.00013 26_[+4]_46 chrV:12065483-12065563 0.00013 8_[+4]_64 chrX:8136600-8136680 0.00015 70_[+4]_2 chrIII:11481564-11481644 0.00018 67_[+4]_5 chrX:2452883-2452963 0.00019 68_[+4]_4 chrV:7978953-7979033 0.00021 45_[+4]_27 chrIII:9950232-9950312 0.00021 61_[+4]_11 chrI:6073625-6073705 0.00021 14_[+4]_58 chrX:14486671-14486751 0.00021 29_[+4]_43 chrX:7100411-7100491 0.00023 62_[+4]_10 chrII:11535680-11535760 0.00023 28_[+4]_44 chrV:18179791-18179871 0.00023 60_[+4]_12 chrIV:13206057-13206137 0.00025 58_[+4]_14 chrIV:7575306-7575386 0.00025 47_[+4]_25 chrX:11297135-11297215 0.00028 66_[+4]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGASRC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAGASRC width=8 seqs=44 chrII:5649585-5649665 ( 14) AGAGACGC 1 chrII:11537349-11537429 ( 63) AGAGACGC 1 chrI:9581590-9581670 ( 1) AGAGACGC 1 chrII:7364168-7364248 ( 33) AGAGACGC 1 chrIII:4502677-4502757 ( 49) AGAGACGC 1 chrV:20249843-20249923 ( 4) AGAGACGC 1 chrIV:17333641-17333721 ( 65) AGAGACGC 1 chrI:4299626-4299706 ( 59) AGAGACGC 1 chrIII:13313941-13314021 ( 43) AGAGACGC 1 chrI:2829247-2829327 ( 22) AGAGACGC 1 chrII:1663712-1663792 ( 13) AGAGACGC 1 chrIII:5958307-5958387 ( 36) AGAGACGC 1 chrX:2090675-2090755 ( 25) AGAGACAC 1 chrV:1570733-1570813 ( 46) AGAGACAC 1 chrX:7788139-7788219 ( 39) AGAGAGAC 1 chrV:6044027-6044107 ( 33) AGAGAGAC 1 chrIII:9109407-9109487 ( 63) AGAGAGAC 1 chrI:10585459-10585539 ( 27) AGAGAGAC 1 chrX:2368586-2368666 ( 23) AGAGAGAC 1 chrIV:5169571-5169651 ( 51) AGAGAGAC 1 chrIII:87331-87411 ( 34) AGAGACGG 1 chrX:6622929-6623009 ( 61) AGAGACAG 1 chrI:11169668-11169748 ( 30) AGAGACAG 1 chrIV:8762639-8762719 ( 18) AGAGAGGG 1 chrI:11554580-11554660 ( 28) AGAGAGGG 1 chrI:15041556-15041636 ( 70) AGAGAGGG 1 chrV:1556385-1556465 ( 58) AGAGACGA 1 chrI:13850939-13851019 ( 4) AGAGACGA 1 chrII:2145907-2145987 ( 69) AGAGACCC 1 chrI:5422331-5422411 ( 27) AGAGAGAG 1 chrV:12065483-12065563 ( 9) AGAGAGAG 1 chrX:8136600-8136680 ( 71) AGAGACAA 1 chrIII:11481564-11481644 ( 68) AGAGAGCC 1 chrX:2452883-2452963 ( 69) GGAGACGC 1 chrV:7978953-7979033 ( 46) AGAGAGAA 1 chrIII:9950232-9950312 ( 62) AGAGAGAA 1 chrI:6073625-6073705 ( 15) AGAGAGAA 1 chrX:14486671-14486751 ( 30) AGAGAGAA 1 chrX:7100411-7100491 ( 63) AGAGACCG 1 chrII:11535680-11535760 ( 29) GGAGACAC 1 chrV:18179791-18179871 ( 61) GGAGACAC 1 chrIV:13206057-13206137 ( 59) TGAGACGC 1 chrIV:7575306-7575386 ( 48) TGAGACGC 1 chrX:11297135-11297215 ( 67) AGAGAGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGASRC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2284 E= 1.8e-009 165 -1210 -169 -260 -1210 -1210 218 -1210 183 -1210 -1210 -1210 -1210 -1210 218 -1210 183 -1210 -1210 -1210 -1210 147 81 -1210 62 -128 111 -1210 -82 147 4 -1210 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGASRC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 1.8e-009 0.886364 0.000000 0.068182 0.045455 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.613636 0.386364 0.000000 0.431818 0.090909 0.477273 0.000000 0.159091 0.613636 0.227273 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAGASRC MEME-4 regular expression -------------------------------------------------------------------------------- AGAGA[CG][GA][CG] -------------------------------------------------------------------------------- Time 16.59 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGTYGCG MEME-5 width = 8 sites = 14 llr = 142 E-value = 2.4e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGTYGCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::1:::: pos.-specific C :a:16:a: probability G a:a1:a:a matrix T :::64::: bits 2.2 *** *** 2.0 *** *** 1.7 *** *** 1.5 *** *** Relative 1.3 *** *** Entropy 1.1 *** **** (14.6 bits) 0.9 *** **** 0.7 *** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGTCGCG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTYGCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:4617070-4617150 37 7.13e-06 TACGCAAACC GCGTCGCG CCCCATATAT chrI:12065401-12065481 70 7.13e-06 CGGAGCGGCC GCGTCGCG GTT chrIII:12714010-12714090 33 7.13e-06 CAACGCACTC GCGTCGCG GTCGCAGTTC chrIV:12123010-12123090 72 7.13e-06 CGTTGCGTAC GCGTCGCG G chrIV:7561901-7561981 34 7.13e-06 TGTCGCAGAA GCGTCGCG GTTGACACGC chrX:13238534-13238614 58 1.61e-05 GCGTGCGTAT GCGTTGCG GTCCACCGTC chrIII:12368473-12368553 50 1.61e-05 TGACACCACC GCGTTGCG GTCGCGTCAC chrV:18021694-18021774 37 1.61e-05 AATAATAAAT GCGTTGCG GAAAACCGAT chrII:6926198-6926278 18 1.61e-05 GACGTCATTC GCGTTGCG TACACACTAA chrIV:3694815-3694895 43 2.18e-05 CACACGCGCT GCGCCGCG AAGCGTGTCT chrI:7084575-7084655 36 2.90e-05 ATTTGAGTAC GCGACGCG GCCGCGACGC chrIII:428618-428698 42 2.90e-05 TCGTCGAACC GCGACGCG TCACATCAGC chrX:13977625-13977705 38 3.47e-05 TGCACGCTAC GCGGCGCG CAGTGCACGA chrIII:870047-870127 4 4.18e-05 GAC GCGCTGCG CATTGTGCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTYGCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:4617070-4617150 7.1e-06 36_[+5]_36 chrI:12065401-12065481 7.1e-06 69_[+5]_3 chrIII:12714010-12714090 7.1e-06 32_[+5]_40 chrIV:12123010-12123090 7.1e-06 71_[+5]_1 chrIV:7561901-7561981 7.1e-06 33_[+5]_39 chrX:13238534-13238614 1.6e-05 57_[+5]_15 chrIII:12368473-12368553 1.6e-05 49_[+5]_23 chrV:18021694-18021774 1.6e-05 36_[+5]_36 chrII:6926198-6926278 1.6e-05 17_[+5]_55 chrIV:3694815-3694895 2.2e-05 42_[+5]_30 chrI:7084575-7084655 2.9e-05 35_[+5]_37 chrIII:428618-428698 2.9e-05 41_[+5]_31 chrX:13977625-13977705 3.5e-05 37_[+5]_35 chrIII:870047-870127 4.2e-05 3_[+5]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTYGCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGTYGCG width=8 seqs=14 chrX:4617070-4617150 ( 37) GCGTCGCG 1 chrI:12065401-12065481 ( 70) GCGTCGCG 1 chrIII:12714010-12714090 ( 33) GCGTCGCG 1 chrIV:12123010-12123090 ( 72) GCGTCGCG 1 chrIV:7561901-7561981 ( 34) GCGTCGCG 1 chrX:13238534-13238614 ( 58) GCGTTGCG 1 chrIII:12368473-12368553 ( 50) GCGTTGCG 1 chrV:18021694-18021774 ( 37) GCGTTGCG 1 chrII:6926198-6926278 ( 18) GCGTTGCG 1 chrIV:3694815-3694895 ( 43) GCGCCGCG 1 chrI:7084575-7084655 ( 36) GCGACGCG 1 chrIII:428618-428698 ( 42) GCGACGCG 1 chrX:13977625-13977705 ( 38) GCGGCGCG 1 chrIII:870047-870127 ( 4) GCGCTGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTYGCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.5702 E= 2.4e+000 -1045 -1045 218 -1045 -1045 218 -1045 -1045 -1045 -1045 218 -1045 -98 -63 -162 122 -1045 154 -1045 37 -1045 -1045 218 -1045 -1045 218 -1045 -1045 -1045 -1045 218 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTYGCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 2.4e+000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.142857 0.142857 0.071429 0.642857 0.000000 0.642857 0.000000 0.357143 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGTYGCG MEME-5 regular expression -------------------------------------------------------------------------------- GCGT[CT]GCG -------------------------------------------------------------------------------- Time 19.89 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:8059583-8059663 8.88e-02 41_[+1(4.61e-05)]_31 chrI:15030902-15030982 3.65e-02 36_[+1(4.61e-05)]_36 chrII:2758616-2758696 6.21e-01 80 chrX:16240804-16240884 2.83e-03 25_[+1(9.31e-05)]_47 chrIV:14104904-14104984 2.45e-01 80 chrIV:7575306-7575386 8.10e-04 30_[+1(9.31e-05)]_42 chrIII:8605123-8605203 5.11e-01 80 chrX:1857936-1858016 3.91e-01 80 chrV:19223692-19223772 4.05e-02 80 chrIII:5900819-5900899 4.85e-03 30_[+2(1.12e-05)]_42 chrIV:14105732-14105812 5.70e-02 80 chrII:13315854-13315934 4.39e-01 8_[+1(9.31e-05)]_10_[+1(9.31e-05)]_\ 10_[+1(9.31e-05)]_10_[+1(9.31e-05)]_10 chrI:2334934-2335014 3.09e-01 5_[+1(4.61e-05)]_46_[+1(4.61e-05)]_\ 13 chrX:2857235-2857315 1.78e-02 37_[+3(1.28e-05)]_35 chrI:9414469-9414549 4.74e-02 2_[+1(4.61e-05)]_70 chrV:4421933-4422013 1.80e-01 80 chrX:13858855-13858935 8.63e-02 80 chrX:371883-371963 9.26e-04 21_[+3(7.13e-06)]_51 chrIII:5958307-5958387 2.99e-06 41_[+5(7.13e-06)]_31 chrIV:12467918-12467998 2.20e-03 25_[+2(1.12e-05)]_47 chrII:11979860-11979940 3.76e-04 62_[+5(7.13e-06)]_10 chrI:10435471-10435551 1.36e-01 80 chrI:9412047-9412127 9.79e-01 80 chrII:15076937-15077017 1.30e-03 24_[+2(1.12e-05)]_48 chrII:9269142-9269222 3.46e-01 80 chrII:873202-873282 8.89e-04 1_[+2(1.12e-05)]_43_[+1(4.61e-05)]_\ 20 chrX:788168-788248 8.39e-02 16_[+2(9.86e-05)]_37_[+2(9.86e-05)]_\ 11 chrII:5016318-5016398 1.34e-01 49_[+1(9.31e-05)]_23 chrI:6021848-6021928 7.05e-03 15_[+3(3.07e-05)]_57 chrII:12462396-12462476 4.45e-01 80 chrII:1663712-1663792 1.65e-03 12_[+4(1.18e-05)]_60 chrI:11533886-11533966 4.39e-01 3_[+1(9.31e-05)]_69 chrIII:2960862-2960942 3.25e-01 4_[+1(4.61e-05)]_12_[+1(4.61e-05)]_\ 12_[+1(4.61e-05)]_10_[+1(4.61e-05)]_10 chrI:12217833-12217913 6.95e-01 80 chrIII:2234409-2234489 1.48e-01 80 chrIV:3539416-3539496 6.25e-01 80 chrI:9108864-9108944 2.78e-01 80 chrI:13260413-13260493 1.46e-01 28_[+1(9.31e-05)]_44 chrI:10822541-10822621 1.32e-04 28_[+2(1.12e-05)]_44 chrII:1042311-1042391 3.84e-03 52_[+1(4.61e-05)]_20 chrI:12904048-12904128 8.75e-02 58_[+1(9.31e-05)]_14 chrX:2452883-2452963 5.18e-03 80 chrIII:9538949-9539029 1.59e-02 80 chrX:12320889-12320969 1.62e-01 80 chrI:2829247-2829327 9.93e-03 21_[+4(1.18e-05)]_51 chrV:16800600-16800680 3.52e-02 8_[+1(9.31e-05)]_23_[+1(9.31e-05)]_\ 33 chrIII:5500108-5500188 6.28e-03 38_[+1(4.61e-05)]_34 chrIII:13313941-13314021 5.16e-03 42_[+4(1.18e-05)]_30 chrI:8512448-8512528 1.77e-01 80 chrV:19303739-19303819 9.14e-02 49_[+1(4.61e-05)]_23 chrI:12659442-12659522 4.52e-02 41_[+1(9.31e-05)]_31 chrIII:4920803-4920883 9.15e-01 80 chrX:14238441-14238521 4.71e-02 19_[+1(4.61e-05)]_53 chrI:4254794-4254874 1.89e-01 34_[+1(4.61e-05)]_38 chrIII:11615014-11615094 4.17e-01 6_[+1(9.31e-05)]_11_[+1(9.31e-05)]_\ 47 chrV:10813872-10813952 2.00e-02 51_[+3(1.28e-05)]_21 chrII:159478-159558 9.43e-02 34_[+2(3.65e-05)]_38 chrIII:5959235-5959315 3.39e-01 80 chrV:18689810-18689890 2.80e-03 80 chrIV:8146351-8146431 1.04e-01 37_[+2(5.08e-05)]_35 chrII:5667680-5667760 3.48e-01 80 chrI:8103106-8103186 2.46e-02 80 chrIII:2263128-2263208 1.04e-01 80 chrIII:2112605-2112685 2.24e-01 5_[+1(4.61e-05)]_67 chrII:7755350-7755430 7.68e-04 25_[+3(5.22e-05)]_3_[+1(4.61e-05)]_\ 36 chrX:8911249-8911329 2.92e-03 80 chrV:1570733-1570813 2.55e-02 45_[+4(2.69e-05)]_27 chrI:13850939-13851019 1.74e-01 80 chrIV:9635796-9635876 6.60e-02 7_[+1(4.61e-05)]_65 chrIV:9770937-9771017 5.72e-01 80 chrI:10438600-10438680 9.75e-01 80 chrIV:17335184-17335264 1.03e-01 41_[+3(6.34e-05)]_31 chrX:8136600-8136680 1.48e-03 42_[+1(4.61e-05)]_30 chrIII:7907551-7907631 9.38e-01 80 chrX:12989334-12989414 6.11e-02 80 chrI:4299626-4299706 1.12e-02 58_[+4(1.18e-05)]_14 chrIV:7168170-7168250 9.85e-02 11_[+1(9.31e-05)]_61 chrIII:5906196-5906276 3.52e-01 80 chrIII:11974562-11974642 4.80e-01 80 chrIV:4799265-4799345 2.73e-03 70_[+1(4.61e-05)]_2 chrII:3957637-3957717 6.85e-01 80 chrIV:7561901-7561981 5.60e-05 33_[+5(7.13e-06)]_39 chrII:6926198-6926278 5.74e-03 17_[+5(1.61e-05)]_55 chrV:12065483-12065563 1.13e-01 80 chrIII:5718537-5718617 7.83e-01 80 chrIV:6601305-6601385 3.49e-01 80 chrIV:14325868-14325948 8.58e-01 80 chrV:6494821-6494901 2.03e-01 80 chrX:14491117-14491197 9.99e-01 80 chrIV:5169571-5169651 9.06e-02 50_[+4(5.38e-05)]_22 chrII:2130739-2130819 4.03e-01 80 chrI:3481529-3481609 7.34e-02 80 chrV:19644055-19644135 8.41e-03 11_[+1(4.61e-05)]_61 chrX:915761-915841 8.10e-02 34_[+1(4.61e-05)]_38 chrX:1845708-1845788 8.04e-01 80 chrI:13301576-13301656 1.24e-01 55_[+1(9.31e-05)]_17 chrII:2832705-2832785 1.14e-01 80 chrIV:17333641-17333721 5.95e-03 64_[+4(1.18e-05)]_8 chrII:2770941-2771021 2.58e-01 80 chrX:17714536-17714616 2.29e-02 80 chrX:8605229-8605309 5.38e-02 80 chrIV:12376150-12376230 6.27e-01 80 chrV:9729902-9729982 4.24e-02 80 chrI:11169668-11169748 6.88e-02 29_[+4(8.07e-05)]_43 chrIII:6452894-6452974 6.43e-01 80 chrIV:8819592-8819672 1.14e-01 80 chrX:2368586-2368666 2.65e-02 22_[+4(5.38e-05)]_50 chrIII:9829825-9829905 4.72e-01 80 chrIII:870047-870127 3.98e-04 3_[+5(4.18e-05)]_28_[+1(9.31e-05)]_\ 33 chrII:10662804-10662884 5.92e-01 80 chrV:1556385-1556465 3.25e-01 80 chrIV:9772258-9772338 5.25e-01 80 chrV:18021694-18021774 3.65e-03 36_[+5(1.61e-05)]_36 chrV:9346942-9347022 3.92e-01 80 chrX:8160193-8160273 9.34e-01 80 chrV:18589778-18589858 9.35e-01 80 chrI:5422331-5422411 7.07e-04 39_[+3(1.28e-05)]_33 chrX:10204446-10204526 7.43e-01 80 chrV:16040585-16040665 5.25e-01 80 chrI:10585459-10585539 2.99e-03 26_[+4(5.38e-05)]_25_[+1(4.61e-05)]_\ 13 chrIII:428618-428698 3.97e-04 41_[+5(2.90e-05)]_17_[+3(6.34e-05)]_\ 6 chrX:13226889-13226969 9.33e-01 80 chrII:12756276-12756356 2.91e-02 7_[+1(9.31e-05)]_65 chrI:14096418-14096498 1.41e-01 38_[+1(4.61e-05)]_34 chrI:15041556-15041636 1.16e-01 69_[+4(9.25e-05)]_3 chrI:2151857-2151937 7.91e-01 80 chrIII:7911792-7911872 1.29e-02 10_[+2(1.12e-05)]_62 chrV:20249843-20249923 7.90e-02 3_[+4(1.18e-05)]_69 chrIII:9109407-9109487 1.92e-02 62_[+4(5.38e-05)]_1_[+1(9.31e-05)]_\ 1 chrI:6166783-6166863 5.56e-03 23_[+2(5.08e-05)]_49 chrX:4503380-4503460 5.70e-01 80 chrV:5239463-5239543 1.64e-02 80 chrX:8157273-8157353 2.14e-01 80 chrII:4935673-4935753 1.43e-04 1_[+2(1.12e-05)]_71 chrIV:12123010-12123090 2.26e-02 60_[+5(1.61e-05)]_3_[+5(7.13e-06)]_\ 1 chrIV:8922136-8922216 8.88e-03 80 chrIII:12714010-12714090 1.23e-02 32_[+5(7.13e-06)]_40 chrI:10374306-10374386 3.48e-04 28_[+1(9.31e-05)]_13_[+3(3.07e-05)]_\ 23 chrI:11554580-11554660 3.73e-01 27_[+4(9.25e-05)]_45 chrI:4198855-4198935 8.88e-01 80 chrX:8416859-8416939 4.34e-02 45_[+2(8.46e-05)]_16_[+2(2.52e-05)]_\ 3 chrX:11297135-11297215 9.07e-04 80 chrX:6622929-6623009 2.68e-01 60_[+4(8.07e-05)]_12 chrX:14486671-14486751 1.74e-03 80 chrIII:8956395-8956475 2.30e-04 22_[+3(1.28e-05)]_14_[+1(9.31e-05)]_\ 28 chrIII:5879446-5879526 1.72e-03 22_[+1(9.31e-05)]_50 chrI:9131958-9132038 9.63e-02 80 chrIII:4502677-4502757 3.69e-02 48_[+4(1.18e-05)]_24 chrIV:8334126-8334206 9.02e-01 80 chrIII:1468589-1468669 3.26e-01 33_[+1(4.61e-05)]_12_[+1(4.61e-05)]_\ 19 chrX:8791953-8792033 9.92e-03 80 chrII:7364168-7364248 5.55e-03 32_[+4(1.18e-05)]_40 chrII:4902194-4902274 3.80e-04 35_[+1(9.31e-05)]_13_[+3(6.34e-05)]_\ 16 chrII:7381296-7381376 2.92e-01 80 chrX:2090675-2090755 4.18e-03 13_[+4(6.56e-05)]_3_[+4(2.69e-05)]_\ 28_[+1(9.31e-05)]_12 chrIII:535622-535702 8.93e-02 39_[+1(4.61e-05)]_33 chrX:14589206-14589286 5.93e-03 53_[+3(6.34e-05)]_19 chrI:6073625-6073705 4.55e-01 80 chrIV:6327533-6327613 8.21e-01 80 chrIV:3694815-3694895 4.24e-04 19_[+3(7.13e-06)]_15_[+5(2.18e-05)]_\ 30 chrX:14243700-14243780 9.15e-03 80 chrX:7569833-7569913 1.65e-02 80 chrIII:4515383-4515463 1.38e-02 16_[+2(1.12e-05)]_56 chrX:6263367-6263447 5.03e-02 80 chrX:826096-826176 8.17e-02 53_[+1(9.31e-05)]_19 chrX:10391354-10391434 2.30e-02 60_[+3(2.18e-05)]_12 chrIII:13687396-13687476 6.88e-03 59_[+2(8.46e-05)]_13 chrIV:4597108-4597188 2.53e-01 37_[+1(4.61e-05)]_35 chrIII:12368473-12368553 5.32e-04 27_[+3(1.28e-05)]_14_[+5(1.61e-05)]_\ 23 chrIV:9858271-9858351 2.89e-01 80 chrI:8600983-8601063 8.47e-03 19_[+3(7.82e-05)]_53 chrIV:8762639-8762719 1.08e-02 17_[+4(9.25e-05)]_55 chrI:9581590-9581670 9.11e-02 [+4(1.18e-05)]_72 chrII:2772316-2772396 6.02e-02 15_[+1(4.61e-05)]_57 chrIII:11481564-11481644 2.83e-01 80 chrIV:8289715-8289795 2.01e-01 80 chrII:3956124-3956204 2.66e-01 30_[+1(4.61e-05)]_42 chrIV:13206057-13206137 5.11e-03 35_[+3(6.34e-05)]_37 chrII:8222928-8223008 7.82e-02 80 chrIII:4274753-4274833 4.72e-02 36_[+2(2.52e-05)]_36 chrV:16742361-16742441 6.93e-03 66_[+3(3.07e-05)]_6 chrIII:9950232-9950312 3.56e-01 80 chrV:7978953-7979033 9.68e-03 6_[+3(7.25e-05)]_66 chrI:12426850-12426930 4.88e-02 80 chrII:2301013-2301093 1.48e-01 80 chrIII:2282728-2282808 3.23e-01 9_[+1(4.61e-05)]_32_[+1(4.61e-05)]_\ 10_[+1(4.61e-05)]_5 chrX:13238534-13238614 2.51e-04 45_[+3(5.22e-05)]_4_[+5(1.61e-05)]_\ 15 chrII:11537349-11537429 9.65e-04 62_[+4(1.18e-05)]_10 chrV:6044027-6044107 1.61e-02 32_[+4(5.38e-05)]_40 chrI:12065401-12065481 9.72e-05 11_[+2(1.12e-05)]_50_[+5(7.13e-06)]_\ 3 chrV:18179791-18179871 2.94e-02 72_[+1(4.61e-05)] chrX:12854219-12854299 9.80e-02 31_[+1(9.31e-05)]_41 chrX:8737189-8737269 1.19e-02 10_[+3(6.34e-05)]_62 chrIII:2126034-2126114 1.00e-01 36_[+2(2.52e-05)]_36 chrII:9491259-9491339 8.40e-01 80 chrIII:2112809-2112889 3.13e-01 45_[+1(4.61e-05)]_27 chrI:310863-310943 6.73e-02 65_[+2(6.20e-05)]_7 chrX:3467151-3467231 8.13e-03 39_[+1(4.61e-05)]_33 chrIII:7972073-7972153 4.06e-01 80 chrII:2145907-2145987 5.23e-04 10_[+2(1.12e-05)]_62 chrX:9505121-9505201 1.76e-02 80 chrI:7321616-7321696 3.30e-01 80 chrII:5649585-5649665 1.21e-03 13_[+4(1.18e-05)]_59 chrI:354958-355038 3.27e-01 11_[+1(4.61e-05)]_11_[+1(4.61e-05)]_\ 11_[+1(4.61e-05)]_11_[+1(4.61e-05)]_4 chrII:1725968-1726048 1.16e-01 80 chrX:4617070-4617150 5.32e-03 36_[+5(7.13e-06)]_36 chrX:7788139-7788219 2.64e-01 38_[+4(5.38e-05)]_34 chrII:5227835-5227915 9.86e-01 80 chrX:13727105-13727185 2.09e-03 8_[+3(6.34e-05)]_28_[+1(4.61e-05)]_\ 28 chrII:11535680-11535760 1.69e-01 80 chrIII:11719561-11719641 2.09e-02 61_[+3(1.28e-05)]_11 chrV:2067010-2067090 8.91e-02 80 chrX:17464207-17464287 9.99e-01 80 chrIII:1085146-1085226 4.65e-03 14_[+3(6.34e-05)]_5_[+1(9.31e-05)]_\ 45 chrII:5081348-5081428 1.54e-02 37_[+2(1.12e-05)]_35 chrIV:10085848-10085928 8.53e-03 19_[+2(8.46e-05)]_53 chrIII:12626399-12626479 2.31e-01 80 chrX:11662734-11662814 1.46e-02 80 chrII:13817435-13817515 4.72e-01 80 chrV:11281478-11281558 4.08e-02 4_[+2(9.86e-05)]_68 chrIV:7488076-7488156 8.43e-01 80 chrIV:12158044-12158124 1.77e-01 80 chrIV:5076575-5076655 3.00e-01 80 chrIV:17162740-17162820 1.66e-04 46_[+5(2.90e-05)]_11_[+1(9.31e-05)]_\ 7 chrIII:188600-188680 5.58e-01 80 chrI:7084575-7084655 8.83e-03 35_[+5(2.90e-05)]_37 chrI:7224680-7224760 2.90e-01 80 chrI:9042835-9042915 9.09e-01 80 chrIII:3127734-3127814 1.11e-01 80 chrX:13598164-13598244 2.06e-01 80 chrX:7100411-7100491 2.43e-03 80 chrI:13289919-13289999 7.48e-01 80 chrI:15034085-15034165 6.52e-02 17_[+3(1.28e-05)]_17_[+3(7.13e-06)]_\ 30 chrX:13977625-13977705 5.64e-02 37_[+5(3.47e-05)]_35 chrIII:8310320-8310400 6.46e-02 32_[+1(9.31e-05)]_40 chrV:14415310-14415390 3.15e-01 80 chrV:12191151-12191231 1.50e-03 5_[+2(1.12e-05)]_67 chrV:246236-246316 4.37e-01 80 chrIV:425790-425870 4.38e-01 80 chrII:960445-960525 1.24e-01 80 chrII:12986014-12986094 7.97e-01 80 chrII:3008644-3008724 6.95e-02 80 chrV:13649916-13649996 5.22e-02 80 chrII:6418157-6418237 5.96e-01 80 chrX:10597684-10597764 1.26e-02 26_[+2(1.12e-05)]_46 chrV:4487999-4488079 2.79e-01 80 chrI:14708125-14708205 9.35e-03 42_[+3(1.28e-05)]_30 chrIII:87331-87411 3.47e-02 33_[+4(6.56e-05)]_39 chrX:16943993-16944073 3.73e-01 80 chrX:9431234-9431314 4.05e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************