******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-34.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:11667420-11667500 1.0000 80 chrIV:4396581-4396661 1.0000 80 chrII:4815515-4815595 1.0000 80 chrX:10437580-10437660 1.0000 80 chrI:14073481-14073561 1.0000 80 chrIV:8048216-8048296 1.0000 80 chrII:8798911-8798991 1.0000 80 chrV:13348247-13348327 1.0000 80 chrI:4225846-4225926 1.0000 80 chrIII:3140354-3140434 1.0000 80 chrI:2608609-2608689 1.0000 80 chrII:9314892-9314972 1.0000 80 chrI:9198180-9198260 1.0000 80 chrII:1211823-1211903 1.0000 80 chrI:13494027-13494107 1.0000 80 chrX:10149143-10149223 1.0000 80 chrIII:8481307-8481387 1.0000 80 chrII:4974711-4974791 1.0000 80 chrV:6875961-6876041 1.0000 80 chrIV:3838871-3838951 1.0000 80 chrIV:5751334-5751414 1.0000 80 chrII:9577814-9577894 1.0000 80 chrV:12978332-12978412 1.0000 80 chrX:11141988-11142068 1.0000 80 chrX:16777043-16777123 1.0000 80 chrV:11336178-11336258 1.0000 80 chrV:5848635-5848715 1.0000 80 chrIV:4646532-4646612 1.0000 80 chrX:15545641-15545721 1.0000 80 chrII:9826013-9826093 1.0000 80 chrX:5734021-5734101 1.0000 80 chrIV:12819140-12819220 1.0000 80 chrII:12354653-12354733 1.0000 80 chrX:16591687-16591767 1.0000 80 chrX:16400732-16400812 1.0000 80 chrI:2841093-2841173 1.0000 80 chrI:9196297-9196377 1.0000 80 chrIV:4674470-4674550 1.0000 80 chrX:11574788-11574868 1.0000 80 chrX:9099432-9099512 1.0000 80 chrIV:7385905-7385985 1.0000 80 chrII:13795964-13796044 1.0000 80 chrIV:1886558-1886638 1.0000 80 chrX:3585143-3585223 1.0000 80 chrV:20746910-20746990 1.0000 80 chrV:3444985-3445065 1.0000 80 chrI:14232528-14232608 1.0000 80 chrX:11387907-11387987 1.0000 80 chrI:11673356-11673436 1.0000 80 chrII:4975445-4975525 1.0000 80 chrIV:70181-70261 1.0000 80 chrIV:13029477-13029557 1.0000 80 chrX:2042814-2042894 1.0000 80 chrV:10470432-10470512 1.0000 80 chrX:2103540-2103620 1.0000 80 chrII:4095689-4095769 1.0000 80 chrV:11701145-11701225 1.0000 80 chrX:9602029-9602109 1.0000 80 chrI:7713543-7713623 1.0000 80 chrX:10769958-10770038 1.0000 80 chrV:14791121-14791201 1.0000 80 chrII:6934888-6934968 1.0000 80 chrI:9426620-9426700 1.0000 80 chrIV:186276-186356 1.0000 80 chrX:12179125-12179205 1.0000 80 chrX:14951377-14951457 1.0000 80 chrIII:11337274-11337354 1.0000 80 chrV:13108882-13108962 1.0000 80 chrIII:3603520-3603600 1.0000 80 chrX:3638444-3638524 1.0000 80 chrII:763152-763232 1.0000 80 chrIII:11446961-11447041 1.0000 80 chrIV:10419501-10419581 1.0000 80 chrV:3445592-3445672 1.0000 80 chrI:5597777-5597857 1.0000 80 chrX:1181288-1181368 1.0000 80 chrV:12034794-12034874 1.0000 80 chrIV:17209425-17209505 1.0000 80 chrIII:13528998-13529078 1.0000 80 chrV:7740961-7741041 1.0000 80 chrX:5208531-5208611 1.0000 80 chrV:11499406-11499486 1.0000 80 chrIV:7101251-7101331 1.0000 80 chrIV:6391488-6391568 1.0000 80 chrIII:2127995-2128075 1.0000 80 chrI:14229421-14229501 1.0000 80 chrX:10907837-10907917 1.0000 80 chrX:13161944-13162024 1.0000 80 chrIV:6399099-6399179 1.0000 80 chrIII:1223905-1223985 1.0000 80 chrI:6326502-6326582 1.0000 80 chrII:7893918-7893998 1.0000 80 chrX:10017761-10017841 1.0000 80 chrV:1231368-1231448 1.0000 80 chrIII:4524573-4524653 1.0000 80 chrI:437730-437810 1.0000 80 chrII:10765551-10765631 1.0000 80 chrII:7299216-7299296 1.0000 80 chrX:15145791-15145871 1.0000 80 chrX:5120332-5120412 1.0000 80 chrIV:9008047-9008127 1.0000 80 chrV:10044866-10044946 1.0000 80 chrIV:10869792-10869872 1.0000 80 chrV:9759018-9759098 1.0000 80 chrV:1773969-1774049 1.0000 80 chrI:1133454-1133534 1.0000 80 chrV:2278662-2278742 1.0000 80 chrV:14548663-14548743 1.0000 80 chrV:9957847-9957927 1.0000 80 chrII:8638288-8638368 1.0000 80 chrIV:4673147-4673227 1.0000 80 chrX:4391393-4391473 1.0000 80 chrIII:1225585-1225665 1.0000 80 chrIII:11494896-11494976 1.0000 80 chrV:20757375-20757455 1.0000 80 chrII:6120550-6120630 1.0000 80 chrV:6893804-6893884 1.0000 80 chrX:3455099-3455179 1.0000 80 chrI:9548919-9548999 1.0000 80 chrII:761931-762011 1.0000 80 chrIII:5842878-5842958 1.0000 80 chrX:10931457-10931537 1.0000 80 chrIII:710212-710292 1.0000 80 chrII:3890545-3890625 1.0000 80 chrI:8308931-8309011 1.0000 80 chrX:13585131-13585211 1.0000 80 chrII:9828732-9828812 1.0000 80 chrII:75891-75971 1.0000 80 chrV:11426643-11426723 1.0000 80 chrIII:10906521-10906601 1.0000 80 chrII:6791759-6791839 1.0000 80 chrX:7653891-7653971 1.0000 80 chrI:6077466-6077546 1.0000 80 chrV:340094-340174 1.0000 80 chrIV:16410280-16410360 1.0000 80 chrIII:10967228-10967308 1.0000 80 chrX:13819718-13819798 1.0000 80 chrIV:5817955-5818035 1.0000 80 chrV:5650642-5650722 1.0000 80 chrV:10670966-10671046 1.0000 80 chrIV:3169008-3169088 1.0000 80 chrIV:1905306-1905386 1.0000 80 chrV:14934033-14934113 1.0000 80 chrIV:12700024-12700104 1.0000 80 chrIII:6329793-6329873 1.0000 80 chrX:6689297-6689377 1.0000 80 chrIV:5975342-5975422 1.0000 80 chrX:4128549-4128629 1.0000 80 chrII:6724211-6724291 1.0000 80 chrI:9199306-9199386 1.0000 80 chrIII:6483814-6483894 1.0000 80 chrIV:14295420-14295500 1.0000 80 chrII:11555761-11555841 1.0000 80 chrII:8314101-8314181 1.0000 80 chrIII:8301034-8301114 1.0000 80 chrI:8277214-8277294 1.0000 80 chrI:6436993-6437073 1.0000 80 chrIV:7278946-7279026 1.0000 80 chrX:5121239-5121319 1.0000 80 chrX:16447204-16447284 1.0000 80 chrIV:11391570-11391650 1.0000 80 chrX:11192234-11192314 1.0000 80 chrV:13576024-13576104 1.0000 80 chrV:16836232-16836312 1.0000 80 chrIV:5504480-5504560 1.0000 80 chrV:9435676-9435756 1.0000 80 chrII:6837116-6837196 1.0000 80 chrX:2793661-2793741 1.0000 80 chrV:14153760-14153840 1.0000 80 chrV:4506009-4506089 1.0000 80 chrV:8439997-8440077 1.0000 80 chrIII:10519675-10519755 1.0000 80 chrIII:4037486-4037566 1.0000 80 chrX:859516-859596 1.0000 80 chrV:6473849-6473929 1.0000 80 chrX:11560195-11560275 1.0000 80 chrIV:3826708-3826788 1.0000 80 chrV:5990524-5990604 1.0000 80 chrV:4356457-4356537 1.0000 80 chrII:5885227-5885307 1.0000 80 chrII:4573085-4573165 1.0000 80 chrIV:10190687-10190767 1.0000 80 chrIII:12894428-12894508 1.0000 80 chrV:20763497-20763577 1.0000 80 chrX:3329386-3329466 1.0000 80 chrIV:3521101-3521181 1.0000 80 chrII:8899035-8899115 1.0000 80 chrI:8004031-8004111 1.0000 80 chrIII:9879122-9879202 1.0000 80 chrIV:12009643-12009723 1.0000 80 chrIV:11006523-11006603 1.0000 80 chrIV:5718604-5718684 1.0000 80 chrIII:558245-558325 1.0000 80 chrIII:5885216-5885296 1.0000 80 chrIV:1033299-1033379 1.0000 80 chrV:18585689-18585769 1.0000 80 chrIV:7077200-7077280 1.0000 80 chrI:11198581-11198661 1.0000 80 chrII:7810878-7810958 1.0000 80 chrII:8830135-8830215 1.0000 80 chrX:6563990-6564070 1.0000 80 chrII:9313377-9313457 1.0000 80 chrII:6260898-6260978 1.0000 80 chrI:9502155-9502235 1.0000 80 chrII:8532146-8532226 1.0000 80 chrX:11630495-11630575 1.0000 80 chrIV:12553152-12553232 1.0000 80 chrX:14829692-14829772 1.0000 80 chrX:3309920-3310000 1.0000 80 chrIV:4756083-4756163 1.0000 80 chrX:4664429-4664509 1.0000 80 chrV:6468086-6468166 1.0000 80 chrX:15220552-15220632 1.0000 80 chrI:9188020-9188100 1.0000 80 chrI:9474934-9475014 1.0000 80 chrII:9358158-9358238 1.0000 80 chrV:16753821-16753901 1.0000 80 chrV:6346386-6346466 1.0000 80 chrIII:12144325-12144405 1.0000 80 chrIV:8606276-8606356 1.0000 80 chrX:15555473-15555553 1.0000 80 chrV:12210576-12210656 1.0000 80 chrX:5698615-5698695 1.0000 80 chrII:4649996-4650076 1.0000 80 chrX:2043467-2043547 1.0000 80 chrX:2922385-2922465 1.0000 80 chrI:5719366-5719446 1.0000 80 chrX:3227152-3227232 1.0000 80 chrIV:8193771-8193851 1.0000 80 chrX:857742-857822 1.0000 80 chrX:15617347-15617427 1.0000 80 chrI:14925438-14925518 1.0000 80 chrX:10843805-10843885 1.0000 80 chrX:12175787-12175867 1.0000 80 chrIV:11142632-11142712 1.0000 80 chrX:2802862-2802942 1.0000 80 chrIII:7849183-7849263 1.0000 80 chrX:6106143-6106223 1.0000 80 chrX:1186942-1187022 1.0000 80 chrX:6747031-6747111 1.0000 80 chrX:6562565-6562645 1.0000 80 chrIII:8524690-8524770 1.0000 80 chrI:2679646-2679726 1.0000 80 chrX:7287059-7287139 1.0000 80 chrX:11126870-11126950 1.0000 80 chrIV:8040672-8040752 1.0000 80 chrIII:5438208-5438288 1.0000 80 chrIV:147614-147694 1.0000 80 chrII:7178855-7178935 1.0000 80 chrI:10142884-10142964 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ceh-34/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-34.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.284 C 0.217 G 0.228 T 0.271 Background letter frequencies (from file dataset with add-one prior applied): A 0.284 C 0.217 G 0.228 T 0.271 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CARATTWC MEME-1 width = 8 sites = 101 llr = 755 E-value = 5.2e-047 ******************************************************************************** -------------------------------------------------------------------------------- Motif CARATTWC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :766::4: pos.-specific C a1:::::a probability G :232:::: matrix T ::11aa6: bits 2.2 * * 2.0 * ** * 1.8 * ** * 1.5 * ** * Relative 1.3 * ** * Entropy 1.1 * ** * (10.8 bits) 0.9 * **** 0.7 ** ***** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAAATTTC consensus GG A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARATTWC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:1186942-1187022 35 2.15e-05 ATATACGTCT CAAATTTC AAGAAATGAT chrIV:11142632-11142712 24 2.15e-05 ATTTTTGGGT CAAATTTC ACGCGCGAAA chrX:11630495-11630575 4 2.15e-05 TAT CAAATTTC ACGTTGCGCT chrI:11198581-11198661 39 2.15e-05 CGGAAGGGCT CAAATTTC GCAGCGGCAG chrIV:7077200-7077280 50 2.15e-05 AAATTGGTGT CAAATTTC AAGTTTTTCC chrIII:5885216-5885296 43 2.15e-05 AACAAGGTAT CAAATTTC AGCGCGTTCG chrIV:12009643-12009723 63 2.15e-05 TTGAATGGAT CAAATTTC ATATATTCTC chrII:8314101-8314181 2 2.15e-05 T CAAATTTC AGTTAAGAAT chrV:11426643-11426723 19 2.15e-05 GCGGTCTACT CAAATTTC ACTTTGCGAA chrIII:11494896-11494976 57 2.15e-05 AATTTGGTGT CAAATTTC CAATTTCACG chrIV:9008047-9008127 17 2.15e-05 ATAATCGGCT CAAATTTC TAAAGAAAAC chrV:1231368-1231448 64 2.15e-05 TGGATCCGCT CAAATTTC ACCTCATCA chrX:10017761-10017841 41 2.15e-05 CCTGTCGGAT CAAATTTC ATTCGACAGA chrX:9602029-9602109 8 2.15e-05 AGGATAT CAAATTTC AAGGCAGTTT chrIV:70181-70261 52 2.15e-05 GAGGCGGTGT CAAATTTC AGGGGTATTG chrI:9196297-9196377 54 2.15e-05 ATTTCACATT CAAATTTC CGCGGGTGGG chrIV:4646532-4646612 68 2.15e-05 AGAGAGGGTT CAAATTTC AATTG chrIV:5751334-5751414 12 2.15e-05 ATGTTGTTCT CAAATTTC GCATAGAGCT chrII:1211823-1211903 42 2.15e-05 CAAAAGGTAT CAAATTTC CTCGCGGTTT chrI:10142884-10142964 47 6.12e-05 CTTCAGGTGT CAAATTAC ACACATTTTG chrIII:5438208-5438288 32 6.12e-05 TACTGCTTAT CAAATTAC ACTTTTGTGA chrX:6106143-6106223 22 6.12e-05 TTACACATAT CAAATTAC GTTTGCATCA chrI:5719366-5719446 20 6.12e-05 AGAGACGGAT CAAATTAC TGCGCAAATT chrV:12210576-12210656 65 6.12e-05 GGCTCAGTGT CAAATTAC TACATTCA chrIV:11391570-11391650 35 6.12e-05 AAATACGTAT CAGATTTC CAAGAGATCA chrIII:6483814-6483894 30 6.12e-05 AATGACATAT CAAATTAC GATGCTTCCC chrII:9828732-9828812 35 6.12e-05 TAGAAGATAT CAGATTTC AATCTGATCT chrII:3890545-3890625 9 6.12e-05 CCAAGTAT CAAATTAC CAACTGTGCT chrV:9759018-9759098 28 6.12e-05 GTTTGACTAT CAAATTAC CATTGGTTCT chrI:5597777-5597857 41 6.12e-05 ACTATAGTAT CAAATTAC CAAGTTAGCC chrII:763152-763232 41 6.12e-05 GAAAAAGTGT CAAATTAC GCGGGGTAAT chrIV:4674470-4674550 45 6.12e-05 CATAACATAT CAAATTAC TGTGTCAACA chrII:4815515-4815595 19 6.12e-05 GAGAAAAGAT CAAATTAC ACCATCTTGC chrV:8439997-8440077 29 7.84e-05 GGAAAGGTTT CAAGTTTC AGTAGAGCTG chrIV:4673147-4673227 46 7.84e-05 TTAGGAGCAT CAAGTTTC AGGAATATCC chrIV:6391488-6391568 67 7.84e-05 AAGGAAGGAT CAAGTTTC AATGCG chrX:11141988-11142068 69 7.84e-05 AGATAGGTAT CAAGTTTC CACA chrV:4506009-4506089 8 9.65e-05 CAGCTAT CAGATTAC GCTTTTTGTC chrIV:7101251-7101331 20 9.65e-05 AAATCAATAT CAGATTAC ATGTCCATTG chrX:11387907-11387987 73 9.65e-05 GACAAAGTAT CAGATTAC chrII:8798911-8798991 48 9.65e-05 AAAACGGTGT CAGATTAC GGTGTCATGT chrIV:5718604-5718684 51 1.46e-04 TCTACCTACT CAAGTTAC AAACATCCAC chrI:8308931-8309011 53 1.46e-04 CCGCGAGTGT CGAATTTC GACGTGTGCG chrX:3455099-3455179 66 1.46e-04 ACTCCGGTGT CAGGTTTC CTGAAAT chrV:14548663-14548743 60 1.46e-04 AAAGTGATGT CAGGTTTC TATTTGAACA chrV:10044866-10044946 25 1.46e-04 AAAAACATAT CGAATTTC TATTGGGAGA chrI:9426620-9426700 53 1.46e-04 CGTTACTTCT CGAATTTC ACGTGTTTGA chrX:15545641-15545721 46 1.46e-04 GTTTTAAGAT CAGGTTTC AAAACATAAA chrII:4974711-4974791 33 1.46e-04 CTGCAGATAT CAAGTTAC ACGCGCTGGG chrI:14073481-14073561 56 1.46e-04 TTCAAAGTGT CGAATTTC TACAATATTT chrX:10437580-10437660 25 1.46e-04 AAATAGGTGT CAGGTTTC ACAAGTGTAC chrX:6689297-6689377 61 1.66e-04 ATCCTCCGAT CATATTTC ATCCATCCTT chrV:5650642-5650722 49 1.66e-04 AATACGGTAT CATATTTC AAAGATCTCA chrI:14232528-14232608 60 1.66e-04 GCGAAGCGAT CATATTTC AGTTTTCGGG chrIII:8524690-8524770 22 2.29e-04 GATTGGGTGT CGGATTTC CGGGGATTCG chrII:6260898-6260978 13 2.29e-04 GCGTCCGTTT CCAATTTC GATCGCAATA chrIII:558245-558325 53 2.29e-04 CGAAATGGCT CCAATTTC TAAGAGTATG chrV:5990524-5990604 55 2.29e-04 TTTATGATAT CCAATTTC AACGAGCTGT chrV:1773969-1774049 30 2.29e-04 GGCCGGGGCT CGAATTAC AGAGATCCGT chrX:10907837-10907917 9 2.29e-04 ACTTTCCG CCAATTTC TTCAAATAAA chrX:11574788-11574868 66 2.29e-04 GATAAAGTAT CAGGTTAC TTAAATC chrIV:12819140-12819220 18 2.29e-04 CATTGAATAT CGAATTAC CAAAAGTGCC chrIV:3838871-3838951 47 2.29e-04 GCACAGGTAT CAGGTTAC ACAGGTTTTG chrIII:3140354-3140434 28 2.29e-04 CAAACAGTAT CAGGTTAC CCCTTAGAGA chrX:2802862-2802942 37 2.64e-04 GTGAAAGCAT CATATTAC TTTGTGTACC chrIV:17209425-17209505 26 2.64e-04 CTTGTCGTAT CATATTAC CGAACGTATT chrI:2608609-2608689 22 2.64e-04 GGCGGGGTGT CATATTAC ATGAAACACT chrII:4573085-4573165 34 3.30e-04 ACATCCTACT CGGATTAC CCTACTGTTC chrIII:10519675-10519755 1 3.30e-04 . CAATTTTC GTTGCTTCAC chrX:4128549-4128629 60 3.30e-04 GTGCCTGGAT CGGATTAC GTGAAGCCGG chrV:2278662-2278742 56 3.30e-04 ACAAGCTTCT CAATTTTC ATCTTCCTGT chrI:1133454-1133534 39 3.30e-04 CGACGGAGAT CGGATTAC AGAGATGACT chrIV:6399099-6399179 53 3.30e-04 TTGTGCCTCT CGGATTAC TGTAATATCT chrX:16400732-16400812 58 3.30e-04 GCAAAGATAT CCAATTAC ATTTGTGTTG chrIV:1033299-1033379 57 3.46e-04 GGCGGGATAT CATGTTTC AATTGGAAAT chrIII:2127995-2128075 34 3.46e-04 CGGCGGGTGT CATGTTTC CTCGTCTGAT chrX:5734021-5734101 23 3.46e-04 gaAAAGGTAT CATGTTTC AAAGCACAGT chrII:8532146-8532226 49 3.85e-04 ACTGACACGC CCAGTTTC GATGAGACCT chrIV:8048216-8048296 61 3.85e-04 CGCGCGGTGT CGAGTTAC AGCCACTTGG chrIV:12553152-12553232 34 4.36e-04 GGCAAGTTCT CCGATTAC CTAATCAGAG chrII:6837116-6837196 32 4.36e-04 AAACAACTAT CAATTTAC TTGTTCTCTA chrI:6077466-6077546 68 4.36e-04 TAATTTGAAA CCGATTAC TTATG chrIII:5842878-5842958 42 4.70e-04 AGATAGGTAT CATGTTAC GTCGAGACGA chrV:11499406-11499486 49 4.70e-04 TTTAGCGGAT CGTATTTC AAAAGAGCTA chrX:15617347-15617427 68 5.06e-04 TCGCCTAGCC CGGGTTAC CCTTG chrX:13585131-13585211 59 5.06e-04 CAGAAAGTAT CGGGTTAC AAGGGTGGGT chrX:10931457-10931537 43 5.06e-04 CAGGAGGTGT CCGGTTTC GAAACCGATT chrI:437730-437810 56 5.06e-04 TCTCGGGTGT CGGGTTAC CGTGTTTGCT chrX:16777043-16777123 18 5.06e-04 TATTGAGTAT CGGGTTAC AAGGAAGGAA chrIV:7385905-7385985 6 5.23e-04 TGTAT CAGTTTAC CGAAATCACA chrIV:14295420-14295500 61 5.56e-04 ATGCGCGCAT CGTATTAC ATTCTCATTT chrX:3309920-3310000 72 6.00e-04 TCAATCATAT CACATTTC G chrII:9577814-9577894 62 6.00e-04 GATGAATTCT CCGGTTAC TTGTACCGAA chrIII:8481307-8481387 60 6.00e-04 AGACGGGTAT CACATTTC ATTCAATCAT chrX:7653891-7653971 24 6.30e-04 GCGAAGGTGT CAACTTTC CATTATATCT chrX:9099432-9099512 54 6.30e-04 TTGAATTACA CAACTTTC TTTTGTAAAA chrI:2679646-2679726 5 6.66e-04 GTCT CATTTTTC AATGTCATAC chrIV:5817955-5818035 22 6.66e-04 CTCTTTTTTC CATTTTTC CCCCGTTAGT chrX:3329386-3329466 23 7.29e-04 GACCCTCACA CGGTTTTC TGCTGTTGTT chrI:11673356-11673436 44 7.29e-04 TTGGGGGTTT CCATTTTC GGGGTCATCC chrX:3585143-3585223 71 8.62e-04 CCGAGAGCAT CCGTTTTC AT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARATTWC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1186942-1187022 2.1e-05 34_[+1]_38 chrIV:11142632-11142712 2.1e-05 23_[+1]_49 chrX:11630495-11630575 2.1e-05 3_[+1]_69 chrI:11198581-11198661 2.1e-05 38_[+1]_34 chrIV:7077200-7077280 2.1e-05 49_[+1]_23 chrIII:5885216-5885296 2.1e-05 42_[+1]_30 chrIV:12009643-12009723 2.1e-05 62_[+1]_10 chrII:8314101-8314181 2.1e-05 1_[+1]_71 chrV:11426643-11426723 2.1e-05 18_[+1]_54 chrIII:11494896-11494976 2.1e-05 56_[+1]_16 chrIV:9008047-9008127 2.1e-05 16_[+1]_56 chrV:1231368-1231448 2.1e-05 63_[+1]_9 chrX:10017761-10017841 2.1e-05 40_[+1]_32 chrX:9602029-9602109 2.1e-05 7_[+1]_65 chrIV:70181-70261 2.1e-05 51_[+1]_21 chrI:9196297-9196377 2.1e-05 53_[+1]_19 chrIV:4646532-4646612 2.1e-05 67_[+1]_5 chrIV:5751334-5751414 2.1e-05 11_[+1]_61 chrII:1211823-1211903 2.1e-05 41_[+1]_31 chrI:10142884-10142964 6.1e-05 46_[+1]_26 chrIII:5438208-5438288 6.1e-05 31_[+1]_41 chrX:6106143-6106223 6.1e-05 21_[+1]_51 chrI:5719366-5719446 6.1e-05 19_[+1]_53 chrV:12210576-12210656 6.1e-05 64_[+1]_8 chrIV:11391570-11391650 6.1e-05 34_[+1]_38 chrIII:6483814-6483894 6.1e-05 29_[+1]_43 chrII:9828732-9828812 6.1e-05 34_[+1]_38 chrII:3890545-3890625 6.1e-05 8_[+1]_64 chrV:9759018-9759098 6.1e-05 27_[+1]_45 chrI:5597777-5597857 6.1e-05 40_[+1]_32 chrII:763152-763232 6.1e-05 40_[+1]_32 chrIV:4674470-4674550 6.1e-05 44_[+1]_28 chrII:4815515-4815595 6.1e-05 18_[+1]_54 chrV:8439997-8440077 7.8e-05 28_[+1]_44 chrIV:4673147-4673227 7.8e-05 45_[+1]_27 chrIV:6391488-6391568 7.8e-05 66_[+1]_6 chrX:11141988-11142068 7.8e-05 68_[+1]_4 chrV:4506009-4506089 9.6e-05 7_[+1]_65 chrIV:7101251-7101331 9.6e-05 19_[+1]_53 chrX:11387907-11387987 9.6e-05 72_[+1] chrII:8798911-8798991 9.6e-05 47_[+1]_25 chrIV:5718604-5718684 0.00015 50_[+1]_22 chrI:8308931-8309011 0.00015 52_[+1]_20 chrX:3455099-3455179 0.00015 65_[+1]_7 chrV:14548663-14548743 0.00015 59_[+1]_13 chrV:10044866-10044946 0.00015 24_[+1]_48 chrI:9426620-9426700 0.00015 52_[+1]_20 chrX:15545641-15545721 0.00015 45_[+1]_27 chrII:4974711-4974791 0.00015 32_[+1]_40 chrI:14073481-14073561 0.00015 55_[+1]_17 chrX:10437580-10437660 0.00015 24_[+1]_48 chrX:6689297-6689377 0.00017 60_[+1]_12 chrV:5650642-5650722 0.00017 48_[+1]_24 chrI:14232528-14232608 0.00017 59_[+1]_13 chrIII:8524690-8524770 0.00023 21_[+1]_51 chrII:6260898-6260978 0.00023 12_[+1]_60 chrIII:558245-558325 0.00023 52_[+1]_20 chrV:5990524-5990604 0.00023 54_[+1]_18 chrV:1773969-1774049 0.00023 29_[+1]_43 chrX:10907837-10907917 0.00023 8_[+1]_64 chrX:11574788-11574868 0.00023 65_[+1]_7 chrIV:12819140-12819220 0.00023 17_[+1]_55 chrIV:3838871-3838951 0.00023 46_[+1]_26 chrIII:3140354-3140434 0.00023 27_[+1]_45 chrX:2802862-2802942 0.00026 36_[+1]_36 chrIV:17209425-17209505 0.00026 25_[+1]_47 chrI:2608609-2608689 0.00026 21_[+1]_51 chrII:4573085-4573165 0.00033 33_[+1]_39 chrIII:10519675-10519755 0.00033 [+1]_72 chrX:4128549-4128629 0.00033 59_[+1]_13 chrV:2278662-2278742 0.00033 55_[+1]_17 chrI:1133454-1133534 0.00033 38_[+1]_34 chrIV:6399099-6399179 0.00033 52_[+1]_20 chrX:16400732-16400812 0.00033 57_[+1]_15 chrIV:1033299-1033379 0.00035 56_[+1]_16 chrIII:2127995-2128075 0.00035 33_[+1]_39 chrX:5734021-5734101 0.00035 22_[+1]_50 chrII:8532146-8532226 0.00038 48_[+1]_24 chrIV:8048216-8048296 0.00038 60_[+1]_12 chrIV:12553152-12553232 0.00044 33_[+1]_39 chrII:6837116-6837196 0.00044 31_[+1]_41 chrI:6077466-6077546 0.00044 67_[+1]_5 chrIII:5842878-5842958 0.00047 41_[+1]_31 chrV:11499406-11499486 0.00047 48_[+1]_24 chrX:15617347-15617427 0.00051 67_[+1]_5 chrX:13585131-13585211 0.00051 58_[+1]_14 chrX:10931457-10931537 0.00051 42_[+1]_30 chrI:437730-437810 0.00051 55_[+1]_17 chrX:16777043-16777123 0.00051 17_[+1]_55 chrIV:7385905-7385985 0.00052 5_[+1]_67 chrIV:14295420-14295500 0.00056 60_[+1]_12 chrX:3309920-3310000 0.0006 71_[+1]_1 chrII:9577814-9577894 0.0006 61_[+1]_11 chrIII:8481307-8481387 0.0006 59_[+1]_13 chrX:7653891-7653971 0.00063 23_[+1]_49 chrX:9099432-9099512 0.00063 53_[+1]_19 chrI:2679646-2679726 0.00067 4_[+1]_68 chrIV:5817955-5818035 0.00067 21_[+1]_51 chrX:3329386-3329466 0.00073 22_[+1]_50 chrI:11673356-11673436 0.00073 43_[+1]_29 chrX:3585143-3585223 0.00086 70_[+1]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARATTWC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CARATTWC width=8 seqs=101 chrX:1186942-1187022 ( 35) CAAATTTC 1 chrIV:11142632-11142712 ( 24) CAAATTTC 1 chrX:11630495-11630575 ( 4) CAAATTTC 1 chrI:11198581-11198661 ( 39) CAAATTTC 1 chrIV:7077200-7077280 ( 50) CAAATTTC 1 chrIII:5885216-5885296 ( 43) CAAATTTC 1 chrIV:12009643-12009723 ( 63) CAAATTTC 1 chrII:8314101-8314181 ( 2) CAAATTTC 1 chrV:11426643-11426723 ( 19) CAAATTTC 1 chrIII:11494896-11494976 ( 57) CAAATTTC 1 chrIV:9008047-9008127 ( 17) CAAATTTC 1 chrV:1231368-1231448 ( 64) CAAATTTC 1 chrX:10017761-10017841 ( 41) CAAATTTC 1 chrX:9602029-9602109 ( 8) CAAATTTC 1 chrIV:70181-70261 ( 52) CAAATTTC 1 chrI:9196297-9196377 ( 54) CAAATTTC 1 chrIV:4646532-4646612 ( 68) CAAATTTC 1 chrIV:5751334-5751414 ( 12) CAAATTTC 1 chrII:1211823-1211903 ( 42) CAAATTTC 1 chrI:10142884-10142964 ( 47) CAAATTAC 1 chrIII:5438208-5438288 ( 32) CAAATTAC 1 chrX:6106143-6106223 ( 22) CAAATTAC 1 chrI:5719366-5719446 ( 20) CAAATTAC 1 chrV:12210576-12210656 ( 65) CAAATTAC 1 chrIV:11391570-11391650 ( 35) CAGATTTC 1 chrIII:6483814-6483894 ( 30) CAAATTAC 1 chrII:9828732-9828812 ( 35) CAGATTTC 1 chrII:3890545-3890625 ( 9) CAAATTAC 1 chrV:9759018-9759098 ( 28) CAAATTAC 1 chrI:5597777-5597857 ( 41) CAAATTAC 1 chrII:763152-763232 ( 41) CAAATTAC 1 chrIV:4674470-4674550 ( 45) CAAATTAC 1 chrII:4815515-4815595 ( 19) CAAATTAC 1 chrV:8439997-8440077 ( 29) CAAGTTTC 1 chrIV:4673147-4673227 ( 46) CAAGTTTC 1 chrIV:6391488-6391568 ( 67) CAAGTTTC 1 chrX:11141988-11142068 ( 69) CAAGTTTC 1 chrV:4506009-4506089 ( 8) CAGATTAC 1 chrIV:7101251-7101331 ( 20) CAGATTAC 1 chrX:11387907-11387987 ( 73) CAGATTAC 1 chrII:8798911-8798991 ( 48) CAGATTAC 1 chrIV:5718604-5718684 ( 51) CAAGTTAC 1 chrI:8308931-8309011 ( 53) CGAATTTC 1 chrX:3455099-3455179 ( 66) CAGGTTTC 1 chrV:14548663-14548743 ( 60) CAGGTTTC 1 chrV:10044866-10044946 ( 25) CGAATTTC 1 chrI:9426620-9426700 ( 53) CGAATTTC 1 chrX:15545641-15545721 ( 46) CAGGTTTC 1 chrII:4974711-4974791 ( 33) CAAGTTAC 1 chrI:14073481-14073561 ( 56) CGAATTTC 1 chrX:10437580-10437660 ( 25) CAGGTTTC 1 chrX:6689297-6689377 ( 61) CATATTTC 1 chrV:5650642-5650722 ( 49) CATATTTC 1 chrI:14232528-14232608 ( 60) CATATTTC 1 chrIII:8524690-8524770 ( 22) CGGATTTC 1 chrII:6260898-6260978 ( 13) CCAATTTC 1 chrIII:558245-558325 ( 53) CCAATTTC 1 chrV:5990524-5990604 ( 55) CCAATTTC 1 chrV:1773969-1774049 ( 30) CGAATTAC 1 chrX:10907837-10907917 ( 9) CCAATTTC 1 chrX:11574788-11574868 ( 66) CAGGTTAC 1 chrIV:12819140-12819220 ( 18) CGAATTAC 1 chrIV:3838871-3838951 ( 47) CAGGTTAC 1 chrIII:3140354-3140434 ( 28) CAGGTTAC 1 chrX:2802862-2802942 ( 37) CATATTAC 1 chrIV:17209425-17209505 ( 26) CATATTAC 1 chrI:2608609-2608689 ( 22) CATATTAC 1 chrII:4573085-4573165 ( 34) CGGATTAC 1 chrIII:10519675-10519755 ( 1) CAATTTTC 1 chrX:4128549-4128629 ( 60) CGGATTAC 1 chrV:2278662-2278742 ( 56) CAATTTTC 1 chrI:1133454-1133534 ( 39) CGGATTAC 1 chrIV:6399099-6399179 ( 53) CGGATTAC 1 chrX:16400732-16400812 ( 58) CCAATTAC 1 chrIV:1033299-1033379 ( 57) CATGTTTC 1 chrIII:2127995-2128075 ( 34) CATGTTTC 1 chrX:5734021-5734101 ( 23) CATGTTTC 1 chrII:8532146-8532226 ( 49) CCAGTTTC 1 chrIV:8048216-8048296 ( 61) CGAGTTAC 1 chrIV:12553152-12553232 ( 34) CCGATTAC 1 chrII:6837116-6837196 ( 32) CAATTTAC 1 chrI:6077466-6077546 ( 68) CCGATTAC 1 chrIII:5842878-5842958 ( 42) CATGTTAC 1 chrV:11499406-11499486 ( 49) CGTATTTC 1 chrX:15617347-15617427 ( 68) CGGGTTAC 1 chrX:13585131-13585211 ( 59) CGGGTTAC 1 chrX:10931457-10931537 ( 43) CCGGTTTC 1 chrI:437730-437810 ( 56) CGGGTTAC 1 chrX:16777043-16777123 ( 18) CGGGTTAC 1 chrIV:7385905-7385985 ( 6) CAGTTTAC 1 chrIV:14295420-14295500 ( 61) CGTATTAC 1 chrX:3309920-3310000 ( 72) CACATTTC 1 chrII:9577814-9577894 ( 62) CCGGTTAC 1 chrIII:8481307-8481387 ( 60) CACATTTC 1 chrX:7653891-7653971 ( 24) CAACTTTC 1 chrX:9099432-9099512 ( 54) CAACTTTC 1 chrI:2679646-2679726 ( 5) CATTTTTC 1 chrIV:5817955-5818035 ( 22) CATTTTTC 1 chrX:3329386-3329466 ( 23) CGGTTTTC 1 chrI:11673356-11673436 ( 44) CCATTTTC 1 chrX:3585143-3585223 ( 71) CCGTTTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARATTWC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.1086 E= 5.2e-047 -1330 221 -1330 -1330 129 -87 -28 -1330 97 -345 33 -97 118 -345 12 -160 -1330 -1330 -1330 188 -1330 -1330 -1330 188 58 -1330 -1330 108 -1330 221 -1330 -1330 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARATTWC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 101 E= 5.2e-047 0.000000 1.000000 0.000000 0.000000 0.693069 0.118812 0.188119 0.000000 0.554455 0.019802 0.287129 0.138614 0.643564 0.019802 0.247525 0.089109 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.425743 0.000000 0.000000 0.574257 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARATTWC MEME-1 regular expression -------------------------------------------------------------------------------- CA[AG][AG]TT[TA]C -------------------------------------------------------------------------------- Time 9.49 secs. ******************************************************************************** ******************************************************************************** MOTIF GWAATTTG MEME-2 width = 8 sites = 84 llr = 640 E-value = 1.1e-033 ******************************************************************************** -------------------------------------------------------------------------------- Motif GWAATTTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :5aa:1:: pos.-specific C ::::222: probability G a::::11a matrix T :5::867: bits 2.2 * 2.0 * 1.8 * ** * 1.5 * ** * Relative 1.3 * ** * Entropy 1.1 * *** * (11.0 bits) 0.9 ***** ** 0.7 ***** ** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAAATTTG consensus T CCC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWAATTTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:15617347-15617427 32 2.37e-05 AGAAAGTGTT GAAATTTG GCACCCCGCC chrV:6346386-6346466 14 2.37e-05 TCTTGCTCTG GAAATTTG ATCCCGTTGC chrIII:8301034-8301114 31 2.37e-05 TCTCTTTCTC GAAATTTG ATACAAGTCG chrIII:11494896-11494976 45 2.37e-05 ATTTCCGCGT GAAATTTG GTGTCAAATT chrIII:4524573-4524653 62 2.37e-05 CTTCATATAT GAAATTTG ATTCCTGTAC chrII:7893918-7893998 16 2.37e-05 TAGAACCGCT GAAATTTG ACATTTGCAG chrIII:1223905-1223985 58 2.37e-05 TTCTCTTTCT GAAATTTG ATATGGTGCA chrIV:10419501-10419581 60 2.37e-05 GCAAAACCTT GAAATTTG ATACGTGGCA chrX:14951377-14951457 61 2.37e-05 GAGATCCGAT GAAATTTG AGAAGCAGAC chrII:12354653-12354733 12 2.37e-05 AAAATGGATG GAAATTTG GAAGAAGGAA chrX:15545641-15545721 29 2.37e-05 CGGGAAGGGA GAAATTTG TTTTAAGATC chrIV:4646532-4646612 44 2.37e-05 TGGTGATATT GAAATTTG ATATGGAGAG chrII:9577814-9577894 14 2.37e-05 TCACGCACAG GAAATTTG AGACGTGGCC chrX:10149143-10149223 15 2.37e-05 GAGTGGCAGT GAAATTTG AAACTTTCTT chrX:2043467-2043547 20 4.63e-05 GAAAGCTGCC GTAATTTG AGCCATGAAC chrIV:4756083-4756163 11 4.63e-05 GATTTTTGAG GTAATTTG AGCAATGTGA chrX:11192234-11192314 32 4.63e-05 GGGCATCTCT GTAATTTG AGAAGACAGG chrI:6077466-6077546 57 4.63e-05 ATAGAGAAAG GTAATTTG AAACCGATTA chrV:20757375-20757455 30 4.63e-05 TACACAATTT GTAATTTG ATCTCATTCA chrV:9957847-9957927 8 4.63e-05 CCTGTTT GTAATTTG ATCACCCTTC chrII:763152-763232 54 4.63e-05 ATTACGCGGG GTAATTTG ATCTATTTGG chrIV:186276-186356 48 4.63e-05 GGTGCTGCAT GTAATTTG AGACACACTG chrI:7713543-7713623 29 4.63e-05 GCTAACCGTT GTAATTTG ACACAGGTCA chrV:10470432-10470512 32 4.63e-05 ATGGTGCCAA GTAATTTG ATGCCTCAGG chrII:9826013-9826093 26 4.63e-05 CACATTGTTT GTAATTTG ATCTCGCATC chrV:12978332-12978412 6 4.63e-05 CACGG GTAATTTG ATATGTTTTG chrI:11667420-11667500 24 4.63e-05 TATTTTAATG GTAATTTG AGATCCCCCG chrII:8830135-8830215 12 6.53e-05 AGGGCGACGT GAAATCTG AGAGATTTTC chrIV:11006523-11006603 22 6.53e-05 GAGACCAATT GAAATCTG ATACTTACAC chrV:11336178-11336258 50 6.53e-05 GAGTGGCGCT GAAATCTG ATACTCAACG chrI:4225846-4225926 26 6.53e-05 TAAATCGATT GAAATCTG ACACCCCTAG chrV:16753821-16753901 9 1.02e-04 TCATGTCT GAAATTCG ATCCTCTTCG chrX:4664429-4664509 24 1.02e-04 TCATGCAAGT GAAATTCG ATACGATTCA chrII:8899035-8899115 40 1.02e-04 GACGGCACAT GTAATCTG AATCCGGCGT chrIII:10519675-10519755 37 1.02e-04 CCTCCGAAGA GTAATCTG ATACAGGCGT chrX:13819718-13819798 70 1.02e-04 TTCCCGATCT GTAATCTG ACA chrII:6934888-6934968 8 1.02e-04 AGAGAGG GAAATTCG ACACGAGTTG chrIV:13029477-13029557 18 1.02e-04 TCAGAAACGC GAAATTCG ACACCAAAAT chrV:13348247-13348327 28 1.02e-04 TAGCACACGT GTAATCTG ATATCCATAT chrI:6436993-6437073 24 1.20e-04 TGTGCTTTTG GTAATTCG ACACCTTTTT chrI:8308931-8309011 17 1.20e-04 TTTTTGAGGT GTAATTCG ATTTCATCTC chrIII:13528998-13529078 19 1.20e-04 CCAAAAACGA GTAATTCG ATACAATTGT chrIII:3603520-3603600 50 1.20e-04 GGCTCAATGC GTAATTCG ATACTCTCGA chrV:11701145-11701225 54 1.20e-04 TAATGAGCGT GTAATTCG ACATCAAACC chrIV:5751334-5751414 50 1.20e-04 CAAACAAAGC GTAATTCG AGGCGACGAA chrII:6724211-6724291 22 1.39e-04 AATGAAAATT GAAACTTG AGAAATTTCA chrII:13795964-13796044 28 1.39e-04 GACAAACAAT GAAACTTG AGCCCCCCCT chrII:5885227-5885307 53 1.58e-04 TTCCGTAAAA GTAACTTG AGCCTTGTTC chrII:75891-75971 7 1.58e-04 GAATTT GTAACTTG ATAGCTCTCG chrII:4095689-4095769 17 1.87e-04 TGACCGGTTG GTAATCCG AGCCATTTGG chrV:6893804-6893884 4 2.02e-04 CCT GAAACCTG ATGCCTTACT chrIV:5504480-5504560 54 2.32e-04 TGTTCGTAAA GTAACCTG ATATTTAGGT chrI:6326502-6326582 56 2.32e-04 AAGAATAAGG GAAACTCG ATACTTTTGG chrIII:11446961-11447041 13 2.32e-04 TTTATATTGT GTAACCTG ATACTTGCAT chrV:13108882-13108962 50 2.32e-04 TGTCAGGAAG GTAACCTG ATATCTTGGG chrII:4975445-4975525 3 2.32e-04 CC GTAACCTG AGCTCTGTGC chrI:9198180-9198260 12 2.32e-04 CACAACGCGT GAAACTCG ATATTCATAT chrIV:4396581-4396661 45 2.32e-04 CAGTGGAGAG GTAACCTG ACACCACAAA chrV:9435676-9435756 62 2.67e-04 CATCGATAGT GTAACTCG TCTCTGTGTC chrIV:3169008-3169088 10 2.67e-04 GGTCCCCTG GAAATGTG CACTTGTCGA chrX:3638444-3638524 61 2.67e-04 AACGACAGGA GAAATGTG ATATGGACAA chrV:6468086-6468166 34 3.06e-04 CGTTCCGAAT GAAATTGG AGATTGTTGA chrIII:10967228-10967308 58 3.06e-04 GATATAGATG GTAATGTG AGAAACCGTC chrV:5848635-5848715 25 3.06e-04 AAAGGTAAAT GTAATGTG ACACCAGCTG chrI:8004031-8004111 21 3.49e-04 AGTCAGTGCG GTAATTGG ATCCATGTTT chrX:5120332-5120412 8 3.49e-04 GCGGTGG GAAATATG AGCCTCGGAA chrI:2841093-2841173 34 3.49e-04 CGTATATATC GAAATATG ATACCTTAGT chrX:16400732-16400812 26 3.49e-04 CAAGGCTTTG GAAATATG TTAGTCGAGC chrI:13494027-13494107 28 3.49e-04 GCAAGAAGAG GTAATTGG ATACTCTAGA chrIV:147614-147694 16 3.73e-04 GCTCTCAACA GTAATATG ATATGAGGCG chrI:14925438-14925518 26 3.85e-04 AAGGGGCGGG GAAACCCG ATCCTTTCCC chrIII:11337274-11337354 54 3.85e-04 GGAGAGCATG GAAACCCG AGTAGTTGTC chrX:3585143-3585223 56 3.85e-04 GAGTTGACCT GAAACCCG AGAGCATCCG chrI:9548919-9548999 50 4.29e-04 CAGAAGTACT GAAATCGG ACACCTTTTC chrIV:8606276-8606356 15 4.59e-04 ATCTGATCAT GTAATCGG ACACCTTTTG chrIV:8040672-8040752 67 4.95e-04 TGTAAATGCA GAAATACG CAATGC chrIV:11391570-11391650 24 4.95e-04 TACAACTTTT GAAATACG TATCAGATTT chrV:14934033-14934113 72 5.45e-04 CATTTAATTG GTAACGTG A chrI:14073481-14073561 24 5.45e-04 AGAAAACGTG GAAACTGG ATACTTCGAA chrIV:11142632-11142712 38 6.10e-04 TTTCACGCGC GAAATTTA AACAATAGTT chrV:14153760-14153840 24 6.10e-04 ACGCCACACC GAAATTTA ATCCGTGCTT chrIV:6399099-6399179 28 6.10e-04 GGAGCTACCT GAAATTTA ATACTTTTTG chrIV:1886558-1886638 33 6.57e-04 CGTCTGTCAT GTAATTTA TTTGCTTTCA chrIV:3521101-3521181 7 6.83e-04 CCATGC GAAACGCG ATACTTGTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWAATTTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:15617347-15617427 2.4e-05 31_[+2]_41 chrV:6346386-6346466 2.4e-05 13_[+2]_59 chrIII:8301034-8301114 2.4e-05 30_[+2]_42 chrIII:11494896-11494976 2.4e-05 44_[+2]_28 chrIII:4524573-4524653 2.4e-05 61_[+2]_11 chrII:7893918-7893998 2.4e-05 15_[+2]_57 chrIII:1223905-1223985 2.4e-05 57_[+2]_15 chrIV:10419501-10419581 2.4e-05 59_[+2]_13 chrX:14951377-14951457 2.4e-05 60_[+2]_12 chrII:12354653-12354733 2.4e-05 11_[+2]_61 chrX:15545641-15545721 2.4e-05 28_[+2]_44 chrIV:4646532-4646612 2.4e-05 43_[+2]_29 chrII:9577814-9577894 2.4e-05 13_[+2]_59 chrX:10149143-10149223 2.4e-05 14_[+2]_58 chrX:2043467-2043547 4.6e-05 19_[+2]_53 chrIV:4756083-4756163 4.6e-05 10_[+2]_62 chrX:11192234-11192314 4.6e-05 31_[+2]_41 chrI:6077466-6077546 4.6e-05 56_[+2]_16 chrV:20757375-20757455 4.6e-05 29_[+2]_43 chrV:9957847-9957927 4.6e-05 7_[+2]_65 chrII:763152-763232 4.6e-05 53_[+2]_19 chrIV:186276-186356 4.6e-05 47_[+2]_25 chrI:7713543-7713623 4.6e-05 28_[+2]_44 chrV:10470432-10470512 4.6e-05 31_[+2]_41 chrII:9826013-9826093 4.6e-05 25_[+2]_47 chrV:12978332-12978412 4.6e-05 5_[+2]_67 chrI:11667420-11667500 4.6e-05 23_[+2]_49 chrII:8830135-8830215 6.5e-05 11_[+2]_61 chrIV:11006523-11006603 6.5e-05 21_[+2]_51 chrV:11336178-11336258 6.5e-05 49_[+2]_23 chrI:4225846-4225926 6.5e-05 25_[+2]_47 chrV:16753821-16753901 0.0001 8_[+2]_64 chrX:4664429-4664509 0.0001 23_[+2]_49 chrII:8899035-8899115 0.0001 39_[+2]_33 chrIII:10519675-10519755 0.0001 36_[+2]_36 chrX:13819718-13819798 0.0001 69_[+2]_3 chrII:6934888-6934968 0.0001 7_[+2]_65 chrIV:13029477-13029557 0.0001 17_[+2]_55 chrV:13348247-13348327 0.0001 27_[+2]_45 chrI:6436993-6437073 0.00012 23_[+2]_49 chrI:8308931-8309011 0.00012 16_[+2]_56 chrIII:13528998-13529078 0.00012 18_[+2]_54 chrIII:3603520-3603600 0.00012 49_[+2]_23 chrV:11701145-11701225 0.00012 53_[+2]_19 chrIV:5751334-5751414 0.00012 49_[+2]_23 chrII:6724211-6724291 0.00014 21_[+2]_51 chrII:13795964-13796044 0.00014 27_[+2]_45 chrII:5885227-5885307 0.00016 52_[+2]_20 chrII:75891-75971 0.00016 6_[+2]_66 chrII:4095689-4095769 0.00019 16_[+2]_56 chrV:6893804-6893884 0.0002 3_[+2]_69 chrIV:5504480-5504560 0.00023 53_[+2]_19 chrI:6326502-6326582 0.00023 55_[+2]_17 chrIII:11446961-11447041 0.00023 12_[+2]_60 chrV:13108882-13108962 0.00023 49_[+2]_23 chrII:4975445-4975525 0.00023 2_[+2]_70 chrI:9198180-9198260 0.00023 11_[+2]_61 chrIV:4396581-4396661 0.00023 44_[+2]_28 chrV:9435676-9435756 0.00027 61_[+2]_11 chrIV:3169008-3169088 0.00027 9_[+2]_63 chrX:3638444-3638524 0.00027 60_[+2]_12 chrV:6468086-6468166 0.00031 33_[+2]_39 chrIII:10967228-10967308 0.00031 57_[+2]_15 chrV:5848635-5848715 0.00031 24_[+2]_48 chrI:8004031-8004111 0.00035 20_[+2]_52 chrX:5120332-5120412 0.00035 7_[+2]_65 chrI:2841093-2841173 0.00035 33_[+2]_39 chrX:16400732-16400812 0.00035 25_[+2]_47 chrI:13494027-13494107 0.00035 27_[+2]_45 chrIV:147614-147694 0.00037 15_[+2]_57 chrI:14925438-14925518 0.00039 25_[+2]_47 chrIII:11337274-11337354 0.00039 53_[+2]_19 chrX:3585143-3585223 0.00039 55_[+2]_17 chrI:9548919-9548999 0.00043 49_[+2]_23 chrIV:8606276-8606356 0.00046 14_[+2]_58 chrIV:8040672-8040752 0.0005 66_[+2]_6 chrIV:11391570-11391650 0.0005 23_[+2]_49 chrV:14934033-14934113 0.00055 71_[+2]_1 chrI:14073481-14073561 0.00055 23_[+2]_49 chrIV:11142632-11142712 0.00061 37_[+2]_35 chrV:14153760-14153840 0.00061 23_[+2]_49 chrIV:6399099-6399179 0.00061 27_[+2]_45 chrIV:1886558-1886638 0.00066 32_[+2]_40 chrIV:3521101-3521181 0.00068 6_[+2]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWAATTTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GWAATTTG width=8 seqs=84 chrX:15617347-15617427 ( 32) GAAATTTG 1 chrV:6346386-6346466 ( 14) GAAATTTG 1 chrIII:8301034-8301114 ( 31) GAAATTTG 1 chrIII:11494896-11494976 ( 45) GAAATTTG 1 chrIII:4524573-4524653 ( 62) GAAATTTG 1 chrII:7893918-7893998 ( 16) GAAATTTG 1 chrIII:1223905-1223985 ( 58) GAAATTTG 1 chrIV:10419501-10419581 ( 60) GAAATTTG 1 chrX:14951377-14951457 ( 61) GAAATTTG 1 chrII:12354653-12354733 ( 12) GAAATTTG 1 chrX:15545641-15545721 ( 29) GAAATTTG 1 chrIV:4646532-4646612 ( 44) GAAATTTG 1 chrII:9577814-9577894 ( 14) GAAATTTG 1 chrX:10149143-10149223 ( 15) GAAATTTG 1 chrX:2043467-2043547 ( 20) GTAATTTG 1 chrIV:4756083-4756163 ( 11) GTAATTTG 1 chrX:11192234-11192314 ( 32) GTAATTTG 1 chrI:6077466-6077546 ( 57) GTAATTTG 1 chrV:20757375-20757455 ( 30) GTAATTTG 1 chrV:9957847-9957927 ( 8) GTAATTTG 1 chrII:763152-763232 ( 54) GTAATTTG 1 chrIV:186276-186356 ( 48) GTAATTTG 1 chrI:7713543-7713623 ( 29) GTAATTTG 1 chrV:10470432-10470512 ( 32) GTAATTTG 1 chrII:9826013-9826093 ( 26) GTAATTTG 1 chrV:12978332-12978412 ( 6) GTAATTTG 1 chrI:11667420-11667500 ( 24) GTAATTTG 1 chrII:8830135-8830215 ( 12) GAAATCTG 1 chrIV:11006523-11006603 ( 22) GAAATCTG 1 chrV:11336178-11336258 ( 50) GAAATCTG 1 chrI:4225846-4225926 ( 26) GAAATCTG 1 chrV:16753821-16753901 ( 9) GAAATTCG 1 chrX:4664429-4664509 ( 24) GAAATTCG 1 chrII:8899035-8899115 ( 40) GTAATCTG 1 chrIII:10519675-10519755 ( 37) GTAATCTG 1 chrX:13819718-13819798 ( 70) GTAATCTG 1 chrII:6934888-6934968 ( 8) GAAATTCG 1 chrIV:13029477-13029557 ( 18) GAAATTCG 1 chrV:13348247-13348327 ( 28) GTAATCTG 1 chrI:6436993-6437073 ( 24) GTAATTCG 1 chrI:8308931-8309011 ( 17) GTAATTCG 1 chrIII:13528998-13529078 ( 19) GTAATTCG 1 chrIII:3603520-3603600 ( 50) GTAATTCG 1 chrV:11701145-11701225 ( 54) GTAATTCG 1 chrIV:5751334-5751414 ( 50) GTAATTCG 1 chrII:6724211-6724291 ( 22) GAAACTTG 1 chrII:13795964-13796044 ( 28) GAAACTTG 1 chrII:5885227-5885307 ( 53) GTAACTTG 1 chrII:75891-75971 ( 7) GTAACTTG 1 chrII:4095689-4095769 ( 17) GTAATCCG 1 chrV:6893804-6893884 ( 4) GAAACCTG 1 chrIV:5504480-5504560 ( 54) GTAACCTG 1 chrI:6326502-6326582 ( 56) GAAACTCG 1 chrIII:11446961-11447041 ( 13) GTAACCTG 1 chrV:13108882-13108962 ( 50) GTAACCTG 1 chrII:4975445-4975525 ( 3) GTAACCTG 1 chrI:9198180-9198260 ( 12) GAAACTCG 1 chrIV:4396581-4396661 ( 45) GTAACCTG 1 chrV:9435676-9435756 ( 62) GTAACTCG 1 chrIV:3169008-3169088 ( 10) GAAATGTG 1 chrX:3638444-3638524 ( 61) GAAATGTG 1 chrV:6468086-6468166 ( 34) GAAATTGG 1 chrIII:10967228-10967308 ( 58) GTAATGTG 1 chrV:5848635-5848715 ( 25) GTAATGTG 1 chrI:8004031-8004111 ( 21) GTAATTGG 1 chrX:5120332-5120412 ( 8) GAAATATG 1 chrI:2841093-2841173 ( 34) GAAATATG 1 chrX:16400732-16400812 ( 26) GAAATATG 1 chrI:13494027-13494107 ( 28) GTAATTGG 1 chrIV:147614-147694 ( 16) GTAATATG 1 chrI:14925438-14925518 ( 26) GAAACCCG 1 chrIII:11337274-11337354 ( 54) GAAACCCG 1 chrX:3585143-3585223 ( 56) GAAACCCG 1 chrI:9548919-9548999 ( 50) GAAATCGG 1 chrIV:8606276-8606356 ( 15) GTAATCGG 1 chrIV:8040672-8040752 ( 67) GAAATACG 1 chrIV:11391570-11391650 ( 24) GAAATACG 1 chrV:14934033-14934113 ( 72) GTAACGTG 1 chrI:14073481-14073561 ( 24) GAAACTGG 1 chrIV:11142632-11142712 ( 38) GAAATTTA 1 chrV:14153760-14153840 ( 24) GAAATTTA 1 chrIV:6399099-6399179 ( 28) GAAATTTA 1 chrIV:1886558-1886638 ( 33) GTAATTTA 1 chrIV:3521101-3521181 ( 7) GAAACGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWAATTTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.26574 E= 1.1e-033 -1304 -1304 213 -1304 88 -1304 -1304 81 182 -1304 -1304 -1304 182 -1304 -1304 -1304 -1304 6 -1304 151 -199 13 -168 119 -1304 13 -168 135 -257 -1304 206 -1304 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWAATTTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 84 E= 1.1e-033 0.000000 0.000000 1.000000 0.000000 0.523810 0.000000 0.000000 0.476190 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.226190 0.000000 0.773810 0.071429 0.238095 0.071429 0.619048 0.000000 0.238095 0.071429 0.690476 0.047619 0.000000 0.952381 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWAATTTG MEME-2 regular expression -------------------------------------------------------------------------------- G[AT]AA[TC][TC][TC]G -------------------------------------------------------------------------------- Time 13.10 secs. ******************************************************************************** ******************************************************************************** MOTIF YTTYCTCT MEME-3 width = 8 sites = 42 llr = 342 E-value = 3.7e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTTYCTCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 6:358:a3 probability G :::::::: matrix T 4a752a:7 bits 2.2 * 2.0 * ** 1.8 * ** 1.5 * *** Relative 1.3 * *** Entropy 1.1 ******** (11.7 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTTCCTCT consensus T CT C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTYCTCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:6893804-6893884 67 1.20e-05 CTTCAGCCTT CTTCCTCT TTTCTC chrV:2278662-2278742 31 1.20e-05 TGTTGTTCTA CTTCCTCT CGTCTCGACA chrIV:5817955-5818035 8 2.69e-05 ATCCATC CTTTCTCT TTTTTCCATT chrV:9957847-9957927 37 2.69e-05 AACTCATCAT CTTTCTCT TACCTCGTTC chrII:10765551-10765631 14 2.69e-05 TCGAGATGCT CTTTCTCT CTTTCCCGAA chrIV:3521101-3521181 22 4.18e-05 GCGATACTTG TTTCCTCT TACGAGTTGT chrV:11701145-11701225 10 4.18e-05 CAAAGAGCT TTTCCTCT CTATACACAA chrI:14232528-14232608 1 4.18e-05 . TTTCCTCT CATTTCTGAG chrII:7178855-7178935 56 5.14e-05 TCGTTGTCTG CTCCCTCT GATAATCTGT chrV:340094-340174 37 5.14e-05 ATTCGGAAAC CTCCCTCT AAAGTGTGAC chrI:14925438-14925518 45 7.96e-05 TCCTTTCCCG CTTCCTCC CTTCGTTGCT chrX:5121239-5121319 55 7.96e-05 CCCTCAACTA TTTTCTCT GAGCCAATAG chrIII:1223905-1223985 46 7.96e-05 CTTCTTTTTC TTTTCTCT TTCTGAAATT chrIII:13528998-13529078 2 7.96e-05 T CTTCCTCC CAAAAACGAG chrV:3444985-3445065 54 7.96e-05 AAAGGATGCG CTTCCTCC TGAGGAGGGA chrX:11141988-11142068 1 7.96e-05 . TTTTCTCT TTTTCACCGC chrI:4225846-4225926 1 7.96e-05 . TTTTCTCT TTTGAAATAA chrIV:8048216-8048296 40 7.96e-05 CGAAAGCCCC TTTTCTCT TTACGCGCGG chrII:9313377-9313457 47 9.16e-05 CACACCGAAC CTCTCTCT ATTCTCTTGT chrV:18585689-18585769 31 9.16e-05 ACTCTTTCCC CTCTCTCT CTCAATATTC chrIII:8301034-8301114 16 9.16e-05 ACTGGTTGCT CTCTCTCT CTTTCTCGAA chrIII:11446961-11447041 35 9.16e-05 TTGCATAGCT CTCTCTCT TGTTAATACC chrX:16400732-16400812 8 9.16e-05 TCCGTCT CTCTCTCT CAAGGCTTTG chrII:4649996-4650076 48 1.04e-04 GGATTCGATT CTTTCTCC TCTCAATATA chrV:14548663-14548743 9 1.16e-04 CCTCACTC TTCCCTCT TCGAGGCAAT chrV:13576024-13576104 24 1.27e-04 TCCACGTGGA TTTCCTCC GACTTCCAAG chrII:7299216-7299296 2 1.27e-04 A TTTCCTCC CACCTCTATT chrV:1231368-1231448 20 1.27e-04 CTCACTACAA TTTCCTCC GAATGTGTTC chrIII:5438208-5438288 9 1.50e-04 TTCCCCCG TTCTCTCT TCCGATACTG chrIV:5975342-5975422 7 1.50e-04 TTTATT CTCCCTCC GGAATAGAAG chrX:13161944-13162024 50 1.50e-04 GCGCCCCTCT CTCCCTCC ATCTCCCCGA chrIV:7278946-7279026 34 1.65e-04 CGCCTACTCA TTTTCTCC ATTCACTTTC chrX:10769958-10770038 73 1.65e-04 ATTTGCTCTT TTTTCTCC chrII:761931-762011 13 1.75e-04 GGAGCTTCTC CTCTCTCC GGGGCTTCTT chrII:7810878-7810958 56 1.90e-04 GTCCGTTCCC CTTCTTCT CCGACTGCTG chrI:8277214-8277294 8 1.90e-04 GCCATCC CTTCTTCT TCATCTTCTC chrV:20746910-20746990 18 1.90e-04 GCACCGACTT CTTCTTCT CCTTGTTCAA chrIII:11337274-11337354 15 2.18e-04 TCCAAAAACT CTTTTTCT CGGATTTTCC chrI:9188020-9188100 70 2.48e-04 ACCCTTTCTG TTTCTTCT CTC chrX:2042814-2042894 44 2.48e-04 GTGTCTGACT TTTCTTCT CCGTGGTGTT chrI:10142884-10142964 27 2.96e-04 TCAATTTTCT TTTTTTCT TCCTTCAGGT chrV:5990524-5990604 31 3.11e-04 ACACCTTGGA CTCTTTCT CGTCAGTTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTYCTCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:6893804-6893884 1.2e-05 66_[+3]_6 chrV:2278662-2278742 1.2e-05 30_[+3]_42 chrIV:5817955-5818035 2.7e-05 7_[+3]_65 chrV:9957847-9957927 2.7e-05 36_[+3]_36 chrII:10765551-10765631 2.7e-05 13_[+3]_59 chrIV:3521101-3521181 4.2e-05 21_[+3]_51 chrV:11701145-11701225 4.2e-05 9_[+3]_63 chrI:14232528-14232608 4.2e-05 [+3]_72 chrII:7178855-7178935 5.1e-05 55_[+3]_17 chrV:340094-340174 5.1e-05 36_[+3]_36 chrI:14925438-14925518 8e-05 44_[+3]_28 chrX:5121239-5121319 8e-05 54_[+3]_18 chrIII:1223905-1223985 8e-05 45_[+3]_27 chrIII:13528998-13529078 8e-05 1_[+3]_71 chrV:3444985-3445065 8e-05 53_[+3]_19 chrX:11141988-11142068 8e-05 [+3]_72 chrI:4225846-4225926 8e-05 [+3]_72 chrIV:8048216-8048296 8e-05 39_[+3]_33 chrII:9313377-9313457 9.2e-05 46_[+3]_26 chrV:18585689-18585769 9.2e-05 30_[+3]_42 chrIII:8301034-8301114 9.2e-05 15_[+3]_57 chrIII:11446961-11447041 9.2e-05 34_[+3]_38 chrX:16400732-16400812 9.2e-05 7_[+3]_65 chrII:4649996-4650076 0.0001 47_[+3]_25 chrV:14548663-14548743 0.00012 8_[+3]_64 chrV:13576024-13576104 0.00013 23_[+3]_49 chrII:7299216-7299296 0.00013 1_[+3]_71 chrV:1231368-1231448 0.00013 19_[+3]_53 chrIII:5438208-5438288 0.00015 8_[+3]_64 chrIV:5975342-5975422 0.00015 6_[+3]_66 chrX:13161944-13162024 0.00015 49_[+3]_23 chrIV:7278946-7279026 0.00017 33_[+3]_39 chrX:10769958-10770038 0.00017 72_[+3] chrII:761931-762011 0.00017 12_[+3]_60 chrII:7810878-7810958 0.00019 55_[+3]_17 chrI:8277214-8277294 0.00019 7_[+3]_65 chrV:20746910-20746990 0.00019 17_[+3]_55 chrIII:11337274-11337354 0.00022 14_[+3]_58 chrI:9188020-9188100 0.00025 69_[+3]_3 chrX:2042814-2042894 0.00025 43_[+3]_29 chrI:10142884-10142964 0.0003 26_[+3]_46 chrV:5990524-5990604 0.00031 30_[+3]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTYCTCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTTYCTCT width=8 seqs=42 chrV:6893804-6893884 ( 67) CTTCCTCT 1 chrV:2278662-2278742 ( 31) CTTCCTCT 1 chrIV:5817955-5818035 ( 8) CTTTCTCT 1 chrV:9957847-9957927 ( 37) CTTTCTCT 1 chrII:10765551-10765631 ( 14) CTTTCTCT 1 chrIV:3521101-3521181 ( 22) TTTCCTCT 1 chrV:11701145-11701225 ( 10) TTTCCTCT 1 chrI:14232528-14232608 ( 1) TTTCCTCT 1 chrII:7178855-7178935 ( 56) CTCCCTCT 1 chrV:340094-340174 ( 37) CTCCCTCT 1 chrI:14925438-14925518 ( 45) CTTCCTCC 1 chrX:5121239-5121319 ( 55) TTTTCTCT 1 chrIII:1223905-1223985 ( 46) TTTTCTCT 1 chrIII:13528998-13529078 ( 2) CTTCCTCC 1 chrV:3444985-3445065 ( 54) CTTCCTCC 1 chrX:11141988-11142068 ( 1) TTTTCTCT 1 chrI:4225846-4225926 ( 1) TTTTCTCT 1 chrIV:8048216-8048296 ( 40) TTTTCTCT 1 chrII:9313377-9313457 ( 47) CTCTCTCT 1 chrV:18585689-18585769 ( 31) CTCTCTCT 1 chrIII:8301034-8301114 ( 16) CTCTCTCT 1 chrIII:11446961-11447041 ( 35) CTCTCTCT 1 chrX:16400732-16400812 ( 8) CTCTCTCT 1 chrII:4649996-4650076 ( 48) CTTTCTCC 1 chrV:14548663-14548743 ( 9) TTCCCTCT 1 chrV:13576024-13576104 ( 24) TTTCCTCC 1 chrII:7299216-7299296 ( 2) TTTCCTCC 1 chrV:1231368-1231448 ( 20) TTTCCTCC 1 chrIII:5438208-5438288 ( 9) TTCTCTCT 1 chrIV:5975342-5975422 ( 7) CTCCCTCC 1 chrX:13161944-13162024 ( 50) CTCCCTCC 1 chrIV:7278946-7279026 ( 34) TTTTCTCC 1 chrX:10769958-10770038 ( 73) TTTTCTCC 1 chrII:761931-762011 ( 13) CTCTCTCC 1 chrII:7810878-7810958 ( 56) CTTCTTCT 1 chrI:8277214-8277294 ( 8) CTTCTTCT 1 chrV:20746910-20746990 ( 18) CTTCTTCT 1 chrIII:11337274-11337354 ( 15) CTTTTTCT 1 chrI:9188020-9188100 ( 70) TTTCTTCT 1 chrX:2042814-2042894 ( 44) TTTCTTCT 1 chrI:10142884-10142964 ( 27) TTTTTTCT 1 chrV:5990524-5990604 ( 31) CTCTTTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTYCTCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8329 E= 3.7e-005 -1204 140 -1204 66 -1204 -1204 -1204 188 -1204 51 -1204 135 -1204 120 -1204 88 -1204 190 -1204 -51 -1204 -1204 -1204 188 -1204 220 -1204 -1204 -1204 40 -1204 140 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTYCTCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 3.7e-005 0.000000 0.571429 0.000000 0.428571 0.000000 0.000000 0.000000 1.000000 0.000000 0.309524 0.000000 0.690476 0.000000 0.500000 0.000000 0.500000 0.000000 0.809524 0.000000 0.190476 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.285714 0.000000 0.714286 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTTYCTCT MEME-3 regular expression -------------------------------------------------------------------------------- [CT]T[TC][CT]CTC[TC] -------------------------------------------------------------------------------- Time 16.49 secs. ******************************************************************************** ******************************************************************************** MOTIF GRAAGAGA MEME-4 width = 8 sites = 61 llr = 435 E-value = 1.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRAAGAGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :5773927 pos.-specific C :::::::: probability G a5337183 matrix T :::::::: bits 2.2 * 2.0 * 1.8 * 1.5 * * Relative 1.3 * ** Entropy 1.1 * ****** (10.3 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGAAGAGA consensus AGGA G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRAAGAGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:5719366-5719446 7 1.76e-05 AAGCAC GGAAGAGA CGGATCAAAT chrIV:12553152-12553232 67 1.76e-05 GCGCGAGAAA GGAAGAGA GAGGCG chrX:15617347-15617427 1 3.95e-05 . GAAAGAGA GCGGTATAGA chrIII:9879122-9879202 14 3.95e-05 AGACTAAAAA GAAAGAGA GTGAATTATT chrIII:6329793-6329873 68 3.95e-05 TGGAGGCAGG GAAAGAGA AGGGG chrII:8638288-8638368 20 3.95e-05 gaggaaataa gaaagaga tggaagGTGT chrII:10765551-10765631 44 3.95e-05 CAGTGAAAAA GAAAGAGA GGGACTAAAG chrX:2103540-2103620 36 3.95e-05 TTTGCGAGAG GAAAGAGA GAAAACTATG chrIV:7385905-7385985 47 3.95e-05 GGTGCAAATA GAAAGAGA GGGGTATTAG chrX:15220552-15220632 73 5.36e-05 GGGCTCCGGA GGGAGAGA chrX:14951377-14951457 47 5.36e-05 TATCCTTTCG GGGAGAGA TCCGATGAAA chrIII:12144325-12144405 45 9.94e-05 ATATCAAAGA GGAAGAGG TAAAGACGAG chrV:13576024-13576104 59 9.94e-05 TACTATGAAG GAGAGAGA GTGACATACT chrIII:10906521-10906601 32 9.94e-05 AGAGAAATGA GAGAGAGA GCGTGTTTAT chrIII:710212-710292 19 9.94e-05 GTGCGTGTGC GGAAGAGG ACGCGGAAAA chrV:3444985-3445065 15 9.94e-05 AGCTGAAGGT GGAGGAGA ATAAGAAGAC chrII:12354653-12354733 73 9.94e-05 AAGGTGTATG GAGAGAGA chrX:5734021-5734101 1 9.94e-05 . gagagaga gagggaAAAG chrV:12978332-12978412 63 9.94e-05 ATAGAGAGTA GGAAGAGG ACTTCGagaa chrX:13161944-13162024 32 1.35e-04 GGAAAAGAAC GAAAGAGG GCGCCCCTCT chrV:3445592-3445672 48 1.35e-04 GAAGAGCCTA GAAAGAGG AGATATGTTT chrIV:5504480-5504560 18 1.56e-04 TACACACACA GGAAAAGA GGGGGGAAAT chrX:13585131-13585211 26 1.56e-04 GCAGTGAGGT GGAAAAGA GGAAAAGTAG chrII:6934888-6934968 49 1.56e-04 GAAGAGCGAG GGAAAAGA GTCAGGGTGG chrII:8830135-8830215 57 1.84e-04 CGAGAAGGGA GAAAAAGA AGAAAAAGGA chrV:16836232-16836312 29 1.84e-04 AAAACAGGGC GAAAAAGA ATGGCGGAGG chrIII:5842878-5842958 8 1.84e-04 AAGAAAT GAAAAAGA AGTGGGACCT chrIV:13029477-13029557 67 1.84e-04 TCCGCTGAAC GAAAAAGA AATGTA chrI:13494027-13494107 3 1.84e-04 gt gaaaaaga gagaTGTGCA chrX:16447204-16447284 25 2.06e-04 GGGGTTCATC GGGAGAGG ATAATATTAC chrII:761931-762011 64 2.06e-04 ATGGAGGGGA GGGGGAGA CGCAGAGAA chrIII:11337274-11337354 41 2.06e-04 CCACTCCGGG GGGGGAGA GCATGGAAAC chrV:5990524-5990604 2 2.68e-04 A GGAAGAAA AGTGGATTAT chrV:7740961-7741041 68 2.68e-04 CGATAGAGGG GGAGGAGG AGCCG chrIV:17209425-17209505 71 2.68e-04 AAAAGAAGAC GAGAGAGG GG chrX:3638444-3638524 27 2.68e-04 TGGATAGACA GGAAGAAA CGTGGTTGGC chrIV:4646532-4646612 57 2.68e-04 ATTTGATATG GAGAGAGG GTTCAAATTT chrV:14153760-14153840 65 3.84e-04 CATTCTGAAG GGAGAAGA AGAAGCAG chrV:11499406-11499486 8 3.84e-04 GAGAGAA GAGAAAGA CAGAAAGCGG chrV:14791121-14791201 23 3.84e-04 AGGCTGGTTA GGAGAAGA AGCAACAGGA chrII:9314892-9314972 53 3.84e-04 AATATGTCGT GGAGAAGA AAGTGCGTGT chrII:8532146-8532226 29 4.28e-04 GAATTAATGA GAAAAAGG TAACTGACAC chrX:11560195-11560275 70 4.28e-04 GCAGTGCAAA GAAGAAGA AGT chrV:10044866-10044946 37 4.54e-04 AATTTCTATT GGGAGAAA AGAAGAATCA chrX:1181288-1181368 42 4.54e-04 GTGAGGTATG GGGGGAGG GGTATCGCTA chrII:4815515-4815595 7 4.54e-04 CAACGC GGGAGAAA AGATCAAATT chrX:6563990-6564070 72 5.37e-04 AGTGTTGAAT GGAGGAAA A chrV:4356457-4356537 57 5.37e-04 TGAATAGGAA GGAAGAAG CATCATGTGG chrIII:10519675-10519755 72 5.37e-04 CACAGGAATC GGAGGAAA G chrII:8314101-8314181 34 5.37e-04 AAATGTAGAT GGAGGAAA AAAGCTAGAT chrV:13108882-13108962 17 5.37e-04 AAACGATGTC GGAAGGGA GACGTCAAGA chrX:2042814-2042894 19 5.37e-04 TTAATAATAA GAGAGAAA TGCACAGGTG chrX:15545641-15545721 21 5.37e-04 TGATCCAGCG GGAAGGGA GAAATTTGTT chrV:8439997-8440077 18 5.65e-04 TTGGCTCTGC GGGAAAGG TTTCAAGTTT chrX:7287059-7287139 48 6.26e-04 ataggaaaat gaaggaaa tgtaaaCCTT chrI:2841093-2841173 15 6.26e-04 CAGGCAGTCC GAAAGGGA CCGTATATAT chrX:16777043-16777123 29 6.26e-04 GGGTTACAAG GAAGGAAA CGGCAGAGTT chrI:11198581-11198661 6 7.55e-04 TGCTA GAAAAAAA TAGAGCTAGA chrX:10907837-10907917 34 7.55e-04 AAAAAGAAAA GAAGAAGG ACCTCCCAAC chrI:14925438-14925518 14 8.80e-04 AAAAGGGTTT GGAAGGGG CGGGGAAACC chrIV:3826708-3826788 59 1.06e-03 GCGGGTAGTA GAGGAAGG CATGAACATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRAAGAGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:5719366-5719446 1.8e-05 6_[+4]_66 chrIV:12553152-12553232 1.8e-05 66_[+4]_6 chrX:15617347-15617427 3.9e-05 [+4]_72 chrIII:9879122-9879202 3.9e-05 13_[+4]_59 chrIII:6329793-6329873 3.9e-05 67_[+4]_5 chrII:8638288-8638368 3.9e-05 19_[+4]_53 chrII:10765551-10765631 3.9e-05 43_[+4]_29 chrX:2103540-2103620 3.9e-05 35_[+4]_37 chrIV:7385905-7385985 3.9e-05 46_[+4]_26 chrX:15220552-15220632 5.4e-05 72_[+4] chrX:14951377-14951457 5.4e-05 46_[+4]_26 chrIII:12144325-12144405 9.9e-05 44_[+4]_28 chrV:13576024-13576104 9.9e-05 58_[+4]_14 chrIII:10906521-10906601 9.9e-05 31_[+4]_41 chrIII:710212-710292 9.9e-05 18_[+4]_54 chrV:3444985-3445065 9.9e-05 14_[+4]_58 chrII:12354653-12354733 9.9e-05 72_[+4] chrX:5734021-5734101 9.9e-05 [+4]_72 chrV:12978332-12978412 9.9e-05 62_[+4]_10 chrX:13161944-13162024 0.00013 31_[+4]_41 chrV:3445592-3445672 0.00013 47_[+4]_25 chrIV:5504480-5504560 0.00016 17_[+4]_55 chrX:13585131-13585211 0.00016 25_[+4]_47 chrII:6934888-6934968 0.00016 48_[+4]_24 chrII:8830135-8830215 0.00018 56_[+4]_16 chrV:16836232-16836312 0.00018 28_[+4]_44 chrIII:5842878-5842958 0.00018 7_[+4]_65 chrIV:13029477-13029557 0.00018 66_[+4]_6 chrI:13494027-13494107 0.00018 2_[+4]_70 chrX:16447204-16447284 0.00021 24_[+4]_48 chrII:761931-762011 0.00021 63_[+4]_9 chrIII:11337274-11337354 0.00021 40_[+4]_32 chrV:5990524-5990604 0.00027 1_[+4]_71 chrV:7740961-7741041 0.00027 67_[+4]_5 chrIV:17209425-17209505 0.00027 70_[+4]_2 chrX:3638444-3638524 0.00027 26_[+4]_46 chrIV:4646532-4646612 0.00027 56_[+4]_16 chrV:14153760-14153840 0.00038 64_[+4]_8 chrV:11499406-11499486 0.00038 7_[+4]_65 chrV:14791121-14791201 0.00038 22_[+4]_50 chrII:9314892-9314972 0.00038 52_[+4]_20 chrII:8532146-8532226 0.00043 28_[+4]_44 chrX:11560195-11560275 0.00043 69_[+4]_3 chrV:10044866-10044946 0.00045 36_[+4]_36 chrX:1181288-1181368 0.00045 41_[+4]_31 chrII:4815515-4815595 0.00045 6_[+4]_66 chrX:6563990-6564070 0.00054 71_[+4]_1 chrV:4356457-4356537 0.00054 56_[+4]_16 chrIII:10519675-10519755 0.00054 71_[+4]_1 chrII:8314101-8314181 0.00054 33_[+4]_39 chrV:13108882-13108962 0.00054 16_[+4]_56 chrX:2042814-2042894 0.00054 18_[+4]_54 chrX:15545641-15545721 0.00054 20_[+4]_52 chrV:8439997-8440077 0.00057 17_[+4]_55 chrX:7287059-7287139 0.00063 47_[+4]_25 chrI:2841093-2841173 0.00063 14_[+4]_58 chrX:16777043-16777123 0.00063 28_[+4]_44 chrI:11198581-11198661 0.00075 5_[+4]_67 chrX:10907837-10907917 0.00075 33_[+4]_39 chrI:14925438-14925518 0.00088 13_[+4]_59 chrIV:3826708-3826788 0.0011 58_[+4]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRAAGAGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRAAGAGA width=8 seqs=61 chrI:5719366-5719446 ( 7) GGAAGAGA 1 chrIV:12553152-12553232 ( 67) GGAAGAGA 1 chrX:15617347-15617427 ( 1) GAAAGAGA 1 chrIII:9879122-9879202 ( 14) GAAAGAGA 1 chrIII:6329793-6329873 ( 68) GAAAGAGA 1 chrII:8638288-8638368 ( 20) GAAAGAGA 1 chrII:10765551-10765631 ( 44) GAAAGAGA 1 chrX:2103540-2103620 ( 36) GAAAGAGA 1 chrIV:7385905-7385985 ( 47) GAAAGAGA 1 chrX:15220552-15220632 ( 73) GGGAGAGA 1 chrX:14951377-14951457 ( 47) GGGAGAGA 1 chrIII:12144325-12144405 ( 45) GGAAGAGG 1 chrV:13576024-13576104 ( 59) GAGAGAGA 1 chrIII:10906521-10906601 ( 32) GAGAGAGA 1 chrIII:710212-710292 ( 19) GGAAGAGG 1 chrV:3444985-3445065 ( 15) GGAGGAGA 1 chrII:12354653-12354733 ( 73) GAGAGAGA 1 chrX:5734021-5734101 ( 1) GAGAGAGA 1 chrV:12978332-12978412 ( 63) GGAAGAGG 1 chrX:13161944-13162024 ( 32) GAAAGAGG 1 chrV:3445592-3445672 ( 48) GAAAGAGG 1 chrIV:5504480-5504560 ( 18) GGAAAAGA 1 chrX:13585131-13585211 ( 26) GGAAAAGA 1 chrII:6934888-6934968 ( 49) GGAAAAGA 1 chrII:8830135-8830215 ( 57) GAAAAAGA 1 chrV:16836232-16836312 ( 29) GAAAAAGA 1 chrIII:5842878-5842958 ( 8) GAAAAAGA 1 chrIV:13029477-13029557 ( 67) GAAAAAGA 1 chrI:13494027-13494107 ( 3) GAAAAAGA 1 chrX:16447204-16447284 ( 25) GGGAGAGG 1 chrII:761931-762011 ( 64) GGGGGAGA 1 chrIII:11337274-11337354 ( 41) GGGGGAGA 1 chrV:5990524-5990604 ( 2) GGAAGAAA 1 chrV:7740961-7741041 ( 68) GGAGGAGG 1 chrIV:17209425-17209505 ( 71) GAGAGAGG 1 chrX:3638444-3638524 ( 27) GGAAGAAA 1 chrIV:4646532-4646612 ( 57) GAGAGAGG 1 chrV:14153760-14153840 ( 65) GGAGAAGA 1 chrV:11499406-11499486 ( 8) GAGAAAGA 1 chrV:14791121-14791201 ( 23) GGAGAAGA 1 chrII:9314892-9314972 ( 53) GGAGAAGA 1 chrII:8532146-8532226 ( 29) GAAAAAGG 1 chrX:11560195-11560275 ( 70) GAAGAAGA 1 chrV:10044866-10044946 ( 37) GGGAGAAA 1 chrX:1181288-1181368 ( 42) GGGGGAGG 1 chrII:4815515-4815595 ( 7) GGGAGAAA 1 chrX:6563990-6564070 ( 72) GGAGGAAA 1 chrV:4356457-4356537 ( 57) GGAAGAAG 1 chrIII:10519675-10519755 ( 72) GGAGGAAA 1 chrII:8314101-8314181 ( 34) GGAGGAAA 1 chrV:13108882-13108962 ( 17) GGAAGGGA 1 chrX:2042814-2042894 ( 19) GAGAGAAA 1 chrX:15545641-15545721 ( 21) GGAAGGGA 1 chrV:8439997-8440077 ( 18) GGGAAAGG 1 chrX:7287059-7287139 ( 48) GAAGGAAA 1 chrI:2841093-2841173 ( 15) GAAAGGGA 1 chrX:16777043-16777123 ( 29) GAAGGAAA 1 chrI:11198581-11198661 ( 6) GAAAAAAA 1 chrX:10907837-10907917 ( 34) GAAGAAGG 1 chrI:14925438-14925518 ( 14) GGAAGGGG 1 chrIV:3826708-3826788 ( 59) GAGGAAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRAAGAGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.50978 E= 1.4e+004 -1257 -1257 213 -1257 79 -1257 116 -1257 131 -1257 37 -1257 138 -1257 20 -1257 6 -1257 163 -1257 172 -1257 -180 -1257 -53 -1257 182 -1257 138 -1257 20 -1257 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRAAGAGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 61 E= 1.4e+004 0.000000 0.000000 1.000000 0.000000 0.491803 0.000000 0.508197 0.000000 0.704918 0.000000 0.295082 0.000000 0.737705 0.000000 0.262295 0.000000 0.295082 0.000000 0.704918 0.000000 0.934426 0.000000 0.065574 0.000000 0.196721 0.000000 0.803279 0.000000 0.737705 0.000000 0.262295 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRAAGAGA MEME-4 regular expression -------------------------------------------------------------------------------- G[GA][AG][AG][GA]AG[AG] -------------------------------------------------------------------------------- Time 19.81 secs. ******************************************************************************** ******************************************************************************** MOTIF AGAMGCAG MEME-5 width = 8 sites = 9 llr = 95 E-value = 3.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGAMGCAG MEME-5 Description -------------------------------------------------------------------------------- Simplified A a:a3::a: pos.-specific C :::7:a:: probability G :a::a::a matrix T :::::::: bits 2.2 * ** * 2.0 * ** * 1.8 *** **** 1.5 *** **** Relative 1.3 *** **** Entropy 1.1 ******** (15.2 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGACGCAG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAMGCAG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:8532146-8532226 12 1.28e-05 CTGTTTGAAG AGACGCAG AATTAATGAG chrIV:11391570-11391650 55 1.28e-05 AGAGATCAGG AGACGCAG ACGATAAATC chrI:9199306-9199386 63 1.28e-05 GACTCCTTTG AGACGCAG AGACGAAACG chrIII:10906521-10906601 16 1.28e-05 CAGGTGAGGA AGACGCAG AGAAATGAGA chrV:14548663-14548743 36 1.28e-05 TAATGTAGAG AGACGCAG AAAAGAAAAG chrIV:6391488-6391568 7 1.28e-05 acagag agacgcag agagatatag chrV:14153760-14153840 73 2.95e-05 AGGGAGAAGA AGAAGCAG chrI:6326502-6326582 29 2.95e-05 AGAGAGTGTG AGAAGCAG TGAGACGCAA chrX:14951377-14951457 69 2.95e-05 ATGAAATTTG AGAAGCAG ACAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAMGCAG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:8532146-8532226 1.3e-05 11_[+5]_61 chrIV:11391570-11391650 1.3e-05 54_[+5]_18 chrI:9199306-9199386 1.3e-05 62_[+5]_10 chrIII:10906521-10906601 1.3e-05 15_[+5]_57 chrV:14548663-14548743 1.3e-05 35_[+5]_37 chrIV:6391488-6391568 1.3e-05 6_[+5]_66 chrV:14153760-14153840 3e-05 72_[+5] chrI:6326502-6326582 3e-05 28_[+5]_44 chrX:14951377-14951457 3e-05 68_[+5]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAMGCAG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGAMGCAG width=8 seqs=9 chrII:8532146-8532226 ( 12) AGACGCAG 1 chrIV:11391570-11391650 ( 55) AGACGCAG 1 chrI:9199306-9199386 ( 63) AGACGCAG 1 chrIII:10906521-10906601 ( 16) AGACGCAG 1 chrV:14548663-14548743 ( 36) AGACGCAG 1 chrIV:6391488-6391568 ( 7) AGACGCAG 1 chrV:14153760-14153840 ( 73) AGAAGCAG 1 chrI:6326502-6326582 ( 29) AGAAGCAG 1 chrX:14951377-14951457 ( 69) AGAAGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAMGCAG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.1193 E= 3.7e+003 182 -982 -982 -982 -982 -982 213 -982 182 -982 -982 -982 23 162 -982 -982 -982 -982 213 -982 -982 220 -982 -982 182 -982 -982 -982 -982 -982 213 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAMGCAG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 3.7e+003 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGAMGCAG MEME-5 regular expression -------------------------------------------------------------------------------- AGA[CA]GCAG -------------------------------------------------------------------------------- Time 23.04 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:11667420-11667500 4.06e-02 23_[+2(4.63e-05)]_49 chrIV:4396581-4396661 1.05e-02 80 chrII:4815515-4815595 5.54e-03 18_[+1(6.12e-05)]_54 chrX:10437580-10437660 1.21e-01 80 chrI:14073481-14073561 1.05e-02 80 chrIV:8048216-8048296 1.04e-02 39_[+3(7.96e-05)]_33 chrII:8798911-8798991 8.56e-02 47_[+1(9.65e-05)]_25 chrV:13348247-13348327 3.85e-01 80 chrI:4225846-4225926 3.19e-04 [+3(7.96e-05)]_17_[+2(6.53e-05)]_47 chrIII:3140354-3140434 3.55e-02 80 chrI:2608609-2608689 3.66e-01 80 chrII:9314892-9314972 5.70e-02 80 chrI:9198180-9198260 3.26e-01 80 chrII:1211823-1211903 1.56e-02 41_[+1(2.15e-05)]_31 chrI:13494027-13494107 3.15e-02 80 chrX:10149143-10149223 1.44e-02 14_[+2(2.37e-05)]_58 chrIII:8481307-8481387 2.41e-01 80 chrII:4974711-4974791 2.28e-01 80 chrV:6875961-6876041 3.84e-01 80 chrIV:3838871-3838951 1.43e-01 80 chrIV:5751334-5751414 4.15e-03 11_[+1(2.15e-05)]_61 chrII:9577814-9577894 6.58e-03 13_[+2(2.37e-05)]_59 chrV:12978332-12978412 8.64e-03 5_[+2(4.63e-05)]_49_[+4(9.94e-05)]_\ 10 chrX:11141988-11142068 2.19e-02 [+3(7.96e-05)]_60_[+1(7.84e-05)]_4 chrX:16777043-16777123 1.14e-01 80 chrV:11336178-11336258 2.28e-01 49_[+2(6.53e-05)]_23 chrV:5848635-5848715 1.05e-01 80 chrIV:4646532-4646612 8.35e-05 43_[+2(2.37e-05)]_16_[+1(2.15e-05)]_\ 5 chrX:15545641-15545721 3.18e-04 28_[+2(2.37e-05)]_44 chrII:9826013-9826093 8.77e-02 25_[+2(4.63e-05)]_47 chrX:5734021-5734101 2.13e-02 [+4(9.94e-05)]_72 chrIV:12819140-12819220 3.07e-01 80 chrII:12354653-12354733 5.03e-03 11_[+2(2.37e-05)]_53_[+4(9.94e-05)] chrX:16591687-16591767 2.38e-01 80 chrX:16400732-16400812 1.89e-03 5_[+3(9.16e-05)]_67 chrI:2841093-2841173 1.25e-02 80 chrI:9196297-9196377 6.64e-03 53_[+1(2.15e-05)]_19 chrIV:4674470-4674550 3.27e-02 44_[+1(6.12e-05)]_28 chrX:11574788-11574868 1.42e-01 80 chrX:9099432-9099512 6.77e-02 80 chrIV:7385905-7385985 1.38e-02 46_[+4(3.95e-05)]_26 chrII:13795964-13796044 5.65e-02 80 chrIV:1886558-1886638 1.47e-01 80 chrX:3585143-3585223 1.07e-01 80 chrV:20746910-20746990 2.13e-01 80 chrV:3444985-3445065 7.65e-03 14_[+4(9.94e-05)]_31_[+3(7.96e-05)]_\ 19 chrI:14232528-14232608 3.51e-03 [+3(4.18e-05)]_72 chrX:11387907-11387987 8.61e-02 72_[+1(9.65e-05)] chrI:11673356-11673436 1.47e-01 80 chrII:4975445-4975525 2.91e-01 80 chrIV:70181-70261 1.20e-02 51_[+1(2.15e-05)]_21 chrIV:13029477-13029557 2.22e-03 80 chrX:2042814-2042894 8.43e-03 80 chrV:10470432-10470512 7.57e-02 31_[+2(4.63e-05)]_41 chrX:2103540-2103620 1.33e-01 35_[+4(3.95e-05)]_37 chrII:4095689-4095769 1.76e-01 80 chrV:11701145-11701225 9.80e-03 9_[+3(4.18e-05)]_63 chrX:9602029-9602109 2.05e-02 7_[+1(2.15e-05)]_65 chrI:7713543-7713623 1.06e-01 28_[+2(4.63e-05)]_44 chrX:10769958-10770038 2.13e-01 80 chrV:14791121-14791201 1.21e-01 80 chrII:6934888-6934968 8.99e-03 80 chrI:9426620-9426700 8.81e-02 80 chrIV:186276-186356 1.41e-02 47_[+2(4.63e-05)]_25 chrX:12179125-12179205 3.35e-01 80 chrX:14951377-14951457 2.74e-05 46_[+4(5.36e-05)]_6_[+2(2.37e-05)]_\ [+5(2.95e-05)]_4 chrIII:11337274-11337354 3.13e-03 80 chrV:13108882-13108962 7.55e-02 80 chrIII:3603520-3603600 7.85e-02 80 chrX:3638444-3638524 5.03e-02 80 chrII:763152-763232 7.67e-04 40_[+1(6.12e-05)]_5_[+2(4.63e-05)]_\ 19 chrIII:11446961-11447041 3.84e-02 32_[+3(9.16e-05)]_40 chrIV:10419501-10419581 2.92e-02 59_[+2(2.37e-05)]_13 chrV:3445592-3445672 4.61e-02 80 chrI:5597777-5597857 2.32e-01 40_[+1(6.12e-05)]_32 chrX:1181288-1181368 1.97e-01 80 chrV:12034794-12034874 3.58e-01 80 chrIV:17209425-17209505 3.38e-02 80 chrIII:13528998-13529078 1.12e-02 1_[+3(7.96e-05)]_71 chrV:7740961-7741041 2.50e-01 80 chrX:5208531-5208611 8.67e-01 80 chrV:11499406-11499486 7.57e-02 80 chrIV:7101251-7101331 1.35e-01 19_[+1(9.65e-05)]_53 chrIV:6391488-6391568 2.38e-04 6_[+5(1.28e-05)]_52_[+1(7.84e-05)]_\ 6 chrIII:2127995-2128075 7.76e-02 80 chrI:14229421-14229501 8.31e-01 80 chrX:10907837-10907917 3.81e-03 80 chrX:13161944-13162024 1.02e-02 80 chrIV:6399099-6399179 4.36e-02 80 chrIII:1223905-1223985 6.84e-03 45_[+3(7.96e-05)]_4_[+2(2.37e-05)]_\ 15 chrI:6326502-6326582 4.68e-03 28_[+5(2.95e-05)]_44 chrII:7893918-7893998 2.96e-02 15_[+2(2.37e-05)]_57 chrX:10017761-10017841 7.83e-02 40_[+1(2.15e-05)]_32 chrV:1231368-1231448 1.25e-02 63_[+1(2.15e-05)]_9 chrIII:4524573-4524653 1.13e-01 61_[+2(2.37e-05)]_11 chrI:437730-437810 2.90e-01 80 chrII:10765551-10765631 9.79e-04 13_[+3(2.69e-05)]_22_[+4(3.95e-05)]_\ 29 chrII:7299216-7299296 8.30e-02 80 chrX:15145791-15145871 5.83e-01 80 chrX:5120332-5120412 5.41e-02 80 chrIV:9008047-9008127 3.83e-02 16_[+1(2.15e-05)]_56 chrV:10044866-10044946 3.28e-02 80 chrIV:10869792-10869872 9.39e-01 80 chrV:9759018-9759098 2.01e-02 27_[+1(6.12e-05)]_45 chrV:1773969-1774049 2.28e-01 80 chrI:1133454-1133534 9.14e-02 80 chrV:2278662-2278742 7.31e-03 4_[+3(5.14e-05)]_18_[+3(1.20e-05)]_\ 42 chrV:14548663-14548743 2.20e-05 35_[+5(1.28e-05)]_37 chrV:9957847-9957927 4.87e-04 7_[+2(4.63e-05)]_21_[+3(2.69e-05)]_\ 36 chrII:8638288-8638368 1.02e-02 19_[+4(3.95e-05)]_53 chrIV:4673147-4673227 1.71e-01 45_[+1(7.84e-05)]_27 chrX:4391393-4391473 5.67e-01 80 chrIII:1225585-1225665 2.16e-01 80 chrIII:11494896-11494976 1.27e-03 44_[+2(2.37e-05)]_4_[+1(2.15e-05)]_\ 16 chrV:20757375-20757455 4.52e-02 29_[+2(4.63e-05)]_43 chrII:6120550-6120630 5.82e-01 80 chrV:6893804-6893884 7.03e-03 66_[+3(1.20e-05)]_6 chrX:3455099-3455179 4.60e-02 80 chrI:9548919-9548999 3.24e-01 80 chrII:761931-762011 2.36e-04 68_[+5(1.28e-05)]_4 chrIII:5842878-5842958 1.16e-02 80 chrX:10931457-10931537 1.35e-01 80 chrIII:710212-710292 2.85e-02 18_[+4(9.94e-05)]_54 chrII:3890545-3890625 1.77e-01 8_[+1(6.12e-05)]_64 chrI:8308931-8309011 6.77e-03 80 chrX:13585131-13585211 4.29e-02 80 chrII:9828732-9828812 4.61e-02 34_[+1(6.12e-05)]_38 chrII:75891-75971 1.49e-01 80 chrV:11426643-11426723 1.77e-02 18_[+1(2.15e-05)]_54 chrIII:10906521-10906601 1.13e-03 15_[+5(1.28e-05)]_6_[+4(9.94e-05)]_\ 43 chrII:6791759-6791839 6.94e-01 80 chrX:7653891-7653971 2.64e-01 80 chrI:6077466-6077546 3.37e-03 56_[+2(4.63e-05)]_16 chrV:340094-340174 9.02e-02 36_[+3(5.14e-05)]_36 chrIV:16410280-16410360 3.29e-01 80 chrIII:10967228-10967308 7.09e-02 80 chrX:13819718-13819798 2.44e-02 80 chrIV:5817955-5818035 3.17e-02 7_[+3(2.69e-05)]_65 chrV:5650642-5650722 5.86e-02 80 chrV:10670966-10671046 8.56e-01 80 chrIV:3169008-3169088 1.81e-01 80 chrIV:1905306-1905386 4.87e-01 80 chrV:14934033-14934113 5.23e-02 80 chrIV:12700024-12700104 4.78e-02 80 chrIII:6329793-6329873 1.20e-02 67_[+4(3.95e-05)]_5 chrX:6689297-6689377 4.93e-02 80 chrIV:5975342-5975422 6.64e-02 80 chrX:4128549-4128629 2.77e-01 80 chrII:6724211-6724291 9.15e-03 80 chrI:9199306-9199386 5.89e-02 62_[+5(1.28e-05)]_10 chrIII:6483814-6483894 1.02e-01 29_[+1(6.12e-05)]_43 chrIV:14295420-14295500 2.26e-01 80 chrII:11555761-11555841 4.44e-01 80 chrII:8314101-8314181 6.18e-03 1_[+1(2.15e-05)]_71 chrIII:8301034-8301114 9.25e-03 13_[+3(9.16e-05)]_9_[+2(2.37e-05)]_\ 42 chrI:8277214-8277294 4.47e-01 80 chrI:6436993-6437073 9.75e-02 80 chrIV:7278946-7279026 2.91e-01 80 chrX:5121239-5121319 8.24e-02 54_[+3(7.96e-05)]_18 chrX:16447204-16447284 2.52e-01 80 chrIV:11391570-11391650 2.17e-04 34_[+1(6.12e-05)]_12_[+5(1.28e-05)]_\ 18 chrX:11192234-11192314 3.86e-02 31_[+2(4.63e-05)]_41 chrV:13576024-13576104 5.46e-03 58_[+4(9.94e-05)]_14 chrV:16836232-16836312 8.25e-02 80 chrIV:5504480-5504560 2.32e-02 80 chrV:9435676-9435756 3.88e-01 80 chrII:6837116-6837196 3.42e-01 80 chrX:2793661-2793741 8.83e-01 80 chrV:14153760-14153840 9.67e-04 72_[+5(2.95e-05)] chrV:4506009-4506089 1.81e-01 7_[+1(9.65e-05)]_65 chrV:8439997-8440077 2.76e-02 28_[+1(7.84e-05)]_44 chrIII:10519675-10519755 1.01e-03 80 chrIII:4037486-4037566 5.59e-01 80 chrX:859516-859596 7.35e-02 80 chrV:6473849-6473929 7.51e-01 80 chrX:11560195-11560275 1.76e-01 80 chrIV:3826708-3826788 1.18e-01 80 chrV:5990524-5990604 3.20e-03 80 chrV:4356457-4356537 2.18e-01 80 chrII:5885227-5885307 2.59e-02 80 chrII:4573085-4573165 3.87e-01 80 chrIV:10190687-10190767 8.89e-01 80 chrIII:12894428-12894508 7.68e-01 80 chrV:20763497-20763577 1.52e-01 80 chrX:3329386-3329466 1.85e-01 80 chrIV:3521101-3521181 1.09e-02 21_[+3(4.18e-05)]_51 chrII:8899035-8899115 1.25e-01 80 chrI:8004031-8004111 8.13e-02 80 chrIII:9879122-9879202 1.48e-02 13_[+4(3.95e-05)]_59 chrIV:12009643-12009723 4.80e-02 62_[+1(2.15e-05)]_10 chrIV:11006523-11006603 1.56e-01 21_[+2(6.53e-05)]_51 chrIV:5718604-5718684 1.16e-01 80 chrIII:558245-558325 2.23e-01 80 chrIII:5885216-5885296 8.21e-02 42_[+1(2.15e-05)]_30 chrIV:1033299-1033379 1.39e-01 80 chrV:18585689-18585769 1.41e-02 30_[+3(9.16e-05)]_42 chrIV:7077200-7077280 4.13e-03 49_[+1(2.15e-05)]_23 chrI:11198581-11198661 3.64e-03 38_[+1(2.15e-05)]_34 chrII:7810878-7810958 4.13e-01 80 chrII:8830135-8830215 3.39e-03 11_[+2(6.53e-05)]_61 chrX:6563990-6564070 2.63e-01 80 chrII:9313377-9313457 7.00e-02 46_[+3(9.16e-05)]_26 chrII:6260898-6260978 2.96e-01 80 chrI:9502155-9502235 1.96e-01 80 chrII:8532146-8532226 1.73e-04 11_[+5(1.28e-05)]_61 chrX:11630495-11630575 1.87e-02 3_[+1(2.15e-05)]_69 chrIV:12553152-12553232 8.74e-03 66_[+4(1.76e-05)]_6 chrX:14829692-14829772 3.84e-01 80 chrX:3309920-3310000 5.11e-01 80 chrIV:4756083-4756163 5.01e-02 10_[+2(4.63e-05)]_62 chrX:4664429-4664509 1.56e-01 80 chrV:6468086-6468166 1.59e-01 80 chrX:15220552-15220632 1.29e-01 72_[+4(5.36e-05)] chrI:9188020-9188100 1.64e-01 80 chrI:9474934-9475014 5.18e-01 80 chrII:9358158-9358238 6.05e-01 80 chrV:16753821-16753901 1.09e-01 80 chrV:6346386-6346466 3.73e-03 13_[+2(2.37e-05)]_59 chrIII:12144325-12144405 4.78e-02 44_[+4(9.94e-05)]_28 chrIV:8606276-8606356 1.19e-01 80 chrX:15555473-15555553 4.65e-02 80 chrV:12210576-12210656 2.17e-02 64_[+1(6.12e-05)]_8 chrX:5698615-5698695 8.12e-01 80 chrII:4649996-4650076 6.95e-02 80 chrX:2043467-2043547 1.61e-01 19_[+2(4.63e-05)]_53 chrX:2922385-2922465 5.58e-01 80 chrI:5719366-5719446 8.35e-04 6_[+4(1.76e-05)]_5_[+1(6.12e-05)]_\ 53 chrX:3227152-3227232 4.11e-01 80 chrIV:8193771-8193851 2.52e-01 80 chrX:857742-857822 9.84e-01 80 chrX:15617347-15617427 7.43e-06 [+4(3.95e-05)]_7_[+5(5.89e-05)]_8_\ [+2(2.37e-05)]_41 chrI:14925438-14925518 4.43e-03 44_[+3(7.96e-05)]_28 chrX:10843805-10843885 7.31e-02 80 chrX:12175787-12175867 6.15e-02 80 chrIV:11142632-11142712 5.00e-03 23_[+1(2.15e-05)]_49 chrX:2802862-2802942 2.75e-01 80 chrIII:7849183-7849263 5.71e-01 80 chrX:6106143-6106223 1.50e-01 21_[+1(6.12e-05)]_51 chrX:1186942-1187022 1.59e-01 34_[+1(2.15e-05)]_38 chrX:6747031-6747111 2.75e-01 80 chrX:6562565-6562645 9.32e-01 80 chrIII:8524690-8524770 4.99e-02 80 chrI:2679646-2679726 2.54e-01 80 chrX:7287059-7287139 2.49e-01 80 chrX:11126870-11126950 4.45e-01 80 chrIV:8040672-8040752 1.64e-01 80 chrIII:5438208-5438288 2.08e-02 31_[+1(6.12e-05)]_41 chrIV:147614-147694 4.71e-01 80 chrII:7178855-7178935 6.79e-02 55_[+3(5.14e-05)]_17 chrI:10142884-10142964 4.09e-02 46_[+1(6.12e-05)]_26 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************