******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-32.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:11704725-11704805 1.0000 80 chrV:11711952-11712032 1.0000 80 chrV:11706510-11706590 1.0000 80 chrM:182-262 1.0000 80 chrM:1821-1901 1.0000 80 chrM:5258-5338 1.0000 80 chrM:1549-1629 1.0000 80 chrM:10154-10234 1.0000 80 chrM:3608-3688 1.0000 80 chrM:11413-11493 1.0000 80 chrM:8173-8253 1.0000 80 chrM:11107-11187 1.0000 80 chrM:10825-10905 1.0000 80 chrV:11705640-11705720 1.0000 80 chrM:7332-7412 1.0000 80 chrX:12656781-12656861 1.0000 80 chrM:3027-3107 1.0000 80 chrV:11703832-11703912 1.0000 80 chrM:979-1059 1.0000 80 chrX:2599036-2599116 1.0000 80 chrM:7130-7210 1.0000 80 chrV:14366706-14366786 1.0000 80 chrM:6037-6117 1.0000 80 chrII:11761914-11761994 1.0000 80 chrM:9078-9158 1.0000 80 chrX:10637380-10637460 1.0000 80 chrX:11473438-11473518 1.0000 80 chrM:2127-2207 1.0000 80 chrM:4660-4740 1.0000 80 chrX:2192099-2192179 1.0000 80 chrX:15189388-15189468 1.0000 80 chrII:11756856-11756936 1.0000 80 chrM:6237-6317 1.0000 80 chrM:12620-12700 1.0000 80 chrM:2330-2410 1.0000 80 chrII:10527711-10527791 1.0000 80 chrM:1186-1266 1.0000 80 chrM:12412-12492 1.0000 80 chrV:10951885-10951965 1.0000 80 chrM:9285-9365 1.0000 80 chrV:7728285-7728365 1.0000 80 chrV:12025881-12025961 1.0000 80 chrX:15345559-15345639 1.0000 80 chrV:17749344-17749424 1.0000 80 chrIV:10403357-10403437 1.0000 80 chrX:10377813-10377893 1.0000 80 chrX:11791712-11791792 1.0000 80 chrV:12036535-12036615 1.0000 80 chrII:5901811-5901891 1.0000 80 chrX:16481150-16481230 1.0000 80 chrX:17544487-17544567 1.0000 80 chrX:4142307-4142387 1.0000 80 chrIV:1067532-1067612 1.0000 80 chrII:7003066-7003146 1.0000 80 chrV:10715934-10716014 1.0000 80 chrX:10145098-10145178 1.0000 80 chrI:7518517-7518597 1.0000 80 chrX:1389504-1389584 1.0000 80 chrV:11707614-11707694 1.0000 80 chrII:410985-411065 1.0000 80 chrV:9765784-9765864 1.0000 80 chrX:4960515-4960595 1.0000 80 chrX:4222950-4223030 1.0000 80 chrIV:5607299-5607379 1.0000 80 chrX:14561630-14561710 1.0000 80 chrI:9373172-9373252 1.0000 80 chrX:8638718-8638798 1.0000 80 chrX:9237945-9238025 1.0000 80 chrI:9381728-9381808 1.0000 80 chrX:7181731-7181811 1.0000 80 chrX:993214-993294 1.0000 80 chrI:6608031-6608111 1.0000 80 chrX:7501140-7501220 1.0000 80 chrV:13028971-13029051 1.0000 80 chrX:13514593-13514673 1.0000 80 chrIII:11054954-11055034 1.0000 80 chrX:14841130-14841210 1.0000 80 chrV:12465567-12465647 1.0000 80 chrX:14744587-14744667 1.0000 80 chrIV:14327026-14327106 1.0000 80 chrX:11467376-11467456 1.0000 80 chrIV:2048990-2049070 1.0000 80 chrV:10858542-10858622 1.0000 80 chrIV:15021228-15021308 1.0000 80 chrX:5812155-5812235 1.0000 80 chrX:6286269-6286349 1.0000 80 chrX:15736631-15736711 1.0000 80 chrIII:7724427-7724507 1.0000 80 chrIV:16492469-16492549 1.0000 80 chrX:7651417-7651497 1.0000 80 chrX:11207105-11207185 1.0000 80 chrIV:14034299-14034379 1.0000 80 chrI:7079316-7079396 1.0000 80 chrII:8796598-8796678 1.0000 80 chrX:8368276-8368356 1.0000 80 chrX:10146743-10146823 1.0000 80 chrII:156048-156128 1.0000 80 chrX:2364892-2364972 1.0000 80 chrV:6100791-6100871 1.0000 80 chrI:13756511-13756591 1.0000 80 chrIII:4223765-4223845 1.0000 80 chrI:3822762-3822842 1.0000 80 chrX:11603409-11603489 1.0000 80 chrX:7951749-7951829 1.0000 80 chrIII:9868269-9868349 1.0000 80 chrIV:10342222-10342302 1.0000 80 chrX:15353977-15354057 1.0000 80 chrIV:9511443-9511523 1.0000 80 chrX:7334472-7334552 1.0000 80 chrII:24645-24725 1.0000 80 chrIII:8904258-8904338 1.0000 80 chrV:11764491-11764571 1.0000 80 chrX:5244239-5244319 1.0000 80 chrII:14405219-14405299 1.0000 80 chrI:12995726-12995806 1.0000 80 chrX:5729219-5729299 1.0000 80 chrV:9789977-9790057 1.0000 80 chrI:5379797-5379877 1.0000 80 chrIV:1070550-1070630 1.0000 80 chrI:8816527-8816607 1.0000 80 chrIV:6919501-6919581 1.0000 80 chrV:10965652-10965732 1.0000 80 chrIV:15471588-15471668 1.0000 80 chrV:10040063-10040143 1.0000 80 chrV:10871543-10871623 1.0000 80 chrII:5057500-5057580 1.0000 80 chrIV:11961847-11961927 1.0000 80 chrII:5337008-5337088 1.0000 80 chrII:6926564-6926644 1.0000 80 chrI:397899-397979 1.0000 80 chrII:10868937-10869017 1.0000 80 chrV:11980329-11980409 1.0000 80 chrIII:10844993-10845073 1.0000 80 chrIV:8795167-8795247 1.0000 80 chrII:9061916-9061996 1.0000 80 chrIV:6321860-6321940 1.0000 80 chrV:15766351-15766431 1.0000 80 chrX:12889860-12889940 1.0000 80 chrX:12393975-12394055 1.0000 80 chrIII:9668062-9668142 1.0000 80 chrII:11980319-11980399 1.0000 80 chrI:10769865-10769945 1.0000 80 chrX:13144435-13144515 1.0000 80 chrV:6227601-6227681 1.0000 80 chrV:6224693-6224773 1.0000 80 chrII:14040520-14040600 1.0000 80 chrII:5661165-5661245 1.0000 80 chrV:11521601-11521681 1.0000 80 chrII:3077074-3077154 1.0000 80 chrV:8802-8882 1.0000 80 chrIV:7845661-7845741 1.0000 80 chrIII:10407465-10407545 1.0000 80 chrIII:2597203-2597283 1.0000 80 chrX:727850-727930 1.0000 80 chrI:16949-17029 1.0000 80 chrIV:16399240-16399320 1.0000 80 chrV:14055173-14055253 1.0000 80 chrV:20778337-20778417 1.0000 80 chrIV:13887612-13887692 1.0000 80 chrIII:1923635-1923715 1.0000 80 chrII:11620173-11620253 1.0000 80 chrII:13335465-13335545 1.0000 80 chrX:13264774-13264854 1.0000 80 chrI:11374399-11374479 1.0000 80 chrIV:2219544-2219624 1.0000 80 chrX:6742243-6742323 1.0000 80 chrX:1345013-1345093 1.0000 80 chrIV:4727980-4728060 1.0000 80 chrX:12363116-12363196 1.0000 80 chrIII:1926599-1926679 1.0000 80 chrX:16446026-16446106 1.0000 80 chrIV:11082970-11083050 1.0000 80 chrII:8028332-8028412 1.0000 80 chrX:1446870-1446950 1.0000 80 chrI:9619947-9620027 1.0000 80 chrX:15181629-15181709 1.0000 80 chrIV:8428755-8428835 1.0000 80 chrII:14795108-14795188 1.0000 80 chrIII:6464428-6464508 1.0000 80 chrII:6913393-6913473 1.0000 80 chrIII:13466363-13466443 1.0000 80 chrX:6371357-6371437 1.0000 80 chrIII:10334148-10334228 1.0000 80 chrIII:4237786-4237866 1.0000 80 chrI:9163484-9163564 1.0000 80 chrV:12343663-12343743 1.0000 80 chrIII:7155832-7155912 1.0000 80 chrIII:7520791-7520871 1.0000 80 chrII:10502859-10502939 1.0000 80 chrX:5165201-5165281 1.0000 80 chrIV:6323823-6323903 1.0000 80 chrX:16056599-16056679 1.0000 80 chrII:8185180-8185260 1.0000 80 chrI:4789913-4789993 1.0000 80 chrI:9669242-9669322 1.0000 80 chrI:1068275-1068355 1.0000 80 chrIV:6097259-6097339 1.0000 80 chrX:16604740-16604820 1.0000 80 chrI:1873872-1873952 1.0000 80 chrIII:11946492-11946572 1.0000 80 chrX:14753656-14753736 1.0000 80 chrV:6267567-6267647 1.0000 80 chrV:9547001-9547081 1.0000 80 chrII:14059927-14060007 1.0000 80 chrX:2242967-2243047 1.0000 80 chrIV:4049666-4049746 1.0000 80 chrI:13663349-13663429 1.0000 80 chrX:3697752-3697832 1.0000 80 chrI:12039922-12040002 1.0000 80 chrX:593486-593566 1.0000 80 chrX:13145307-13145387 1.0000 80 chrIII:8417538-8417618 1.0000 80 chrX:8386329-8386409 1.0000 80 chrIII:8447105-8447185 1.0000 80 chrX:949737-949817 1.0000 80 chrX:14708407-14708487 1.0000 80 chrX:11031337-11031417 1.0000 80 chrV:53452-53532 1.0000 80 chrX:17479991-17480071 1.0000 80 chrIV:17249835-17249915 1.0000 80 chrIII:10848985-10849065 1.0000 80 chrIII:1925312-1925392 1.0000 80 chrX:2549451-2549531 1.0000 80 chrIII:8795817-8795897 1.0000 80 chrI:9854049-9854129 1.0000 80 chrIII:4899870-4899950 1.0000 80 chrX:16961568-16961648 1.0000 80 chrII:4851765-4851845 1.0000 80 chrII:15025935-15026015 1.0000 80 chrX:5841251-5841331 1.0000 80 chrIV:1094311-1094391 1.0000 80 chrIII:5679085-5679165 1.0000 80 chrIV:6336771-6336851 1.0000 80 chrV:14685719-14685799 1.0000 80 chrIII:3801469-3801549 1.0000 80 chrI:1958498-1958578 1.0000 80 chrI:461714-461794 1.0000 80 chrX:6743970-6744050 1.0000 80 chrIII:12612630-12612710 1.0000 80 chrX:353290-353370 1.0000 80 chrX:5429508-5429588 1.0000 80 chrX:15841215-15841295 1.0000 80 chrI:8426910-8426990 1.0000 80 chrX:10766277-10766357 1.0000 80 chrI:11930102-11930182 1.0000 80 chrX:16682073-16682153 1.0000 80 chrX:7823217-7823297 1.0000 80 chrX:12106174-12106254 1.0000 80 chrI:5316485-5316565 1.0000 80 chrV:12291766-12291846 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ceh-32/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-32.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.256 C 0.234 G 0.245 T 0.265 Background letter frequencies (from file dataset with add-one prior applied): A 0.256 C 0.234 G 0.245 T 0.265 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GMGAGARA MEME-1 width = 8 sites = 70 llr = 506 E-value = 8.6e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif GMGAGARA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 16291a5a pos.-specific C :4:::::: probability G 6:819:4: matrix T 21:::::: bits 2.1 1.9 * * 1.7 *** * 1.5 *** * Relative 1.3 **** * Entropy 1.0 **** * (10.4 bits) 0.8 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGAGAAA consensus TCA G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGAGARA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:10868937-10869017 58 1.62e-05 ACGAGAGAGT GAGAGAAA CGGAGTGTAA chrX:14841130-14841210 55 1.62e-05 agacgagcta gagagaAA TGACGACGCA chrX:7823217-7823297 40 3.16e-05 CTCGCACATT GAGAGAGA TTACGCAAAA chrX:14708407-14708487 71 3.16e-05 TGAAGCGAGA GAGAGAGA GA chrI:12039922-12040002 43 3.16e-05 AATAATGGCC GAGAGAGA GAGGGAGAGA chrIII:2597203-2597283 19 3.16e-05 GCCGAAAAGG GAGAGAGA AGGACAGAGA chrV:6224693-6224773 13 3.16e-05 ATTAGAAGAG GAGAGAGA ATAGAGAAAC chrI:10769865-10769945 6 3.16e-05 agaga gagagaga gaTGAATGGA chrII:5337008-5337088 13 3.16e-05 GATGGTGGGG GAGAGAGA TCGAGAGATG chrX:5729219-5729299 54 3.16e-05 GAGGGACGTG GAGAGAGA GAAGGCTCGC chrIV:16492469-16492549 46 3.16e-05 GAAGGGACAa gagagaga gagagagaga chrX:15189388-15189468 41 3.16e-05 GCGGGACTAa gagagaga gggagagagg chrI:1958498-1958578 20 4.64e-05 AAATGACGTT GCGAGAAA ATGAGAAAAA chrV:15766351-15766431 4 4.64e-05 AAT GCGAGAAA ATCGAGAGAT chrV:11704725-11704805 62 4.64e-05 GTTGCAGAAG GCGAGAAA AGAGGAGACA chrI:4789913-4789993 50 6.06e-05 TCACAGAAAA GCGAGAGA CGCAGAGAAA chrIV:2219544-2219624 17 6.06e-05 TACTGGGCAG GCGAGAGA GGCTCTGAGA chrI:13756511-13756591 24 6.06e-05 GTAGTAGAGA GCGAGAGA CACAGAGACT chrIII:7155832-7155912 29 7.81e-05 GAGATATCAC TAGAGAAA CTGAAAAGAA chrV:12025881-12025961 47 7.81e-05 AAGTGAGAAT TAGAGAAA CAGAAATTGC chrII:11761914-11761994 54 7.81e-05 GTGCGCAAAT TAGAGaaa attaaaatac chrX:7334472-7334552 7 9.48e-05 GAGATT TAGAGAGA ACGACAAAGA chrX:10766277-10766357 14 1.28e-04 GGGACACTGA GAAAGAAA GACAGCCATC chrIII:10848985-10849065 66 1.28e-04 GCCTGGCGCA TCGAGAAA CGCGCAA chrIII:8447105-8447185 35 1.28e-04 CACCGAATAT TCGAGAAA CGTCTAGTAC chrII:6913393-6913473 59 1.28e-04 TTCGAAATTC GAAAGAAA ATTTATTGTC chrI:16949-17029 30 1.28e-04 AATAATTGCG TCGAGAAA CGCGTCAGTA chrI:5379797-5379877 73 1.28e-04 CTACATCATT TCGAGAAA chrIII:8795817-8795897 50 1.45e-04 CCGACGACAA AAGAGAAA TAGAACAGCC chrV:6227601-6227681 18 1.45e-04 ACACGATAGG AAGAGAAA AGAGAGCGAA chrIV:10403357-10403437 1 1.45e-04 . AAGAGAAA CGCCGCGGAG chrX:16604740-16604820 55 1.76e-04 CCGAGGACAC GAAAGAGA GCGGTTGTTG chrIV:6097259-6097339 42 1.76e-04 ATATGTGAGT GAAAGAGA GTGTGAGAGA chrX:4222950-4223030 13 1.76e-04 AGATGAGTGA TCGAGAGA CGGAGACAGG chrX:6371357-6371437 6 1.92e-04 TCGAC AAGAGAGA ATAACATGAC chrIII:9868269-9868349 4 2.08e-04 ATT GCAAGAAA TTATTTTCCG chrX:12393975-12394055 47 2.23e-04 AGGTCAATAC ACGAGAAA TGCGCCAGCA chrV:17749344-17749424 20 2.23e-04 AAATCAAATT ACGAGAAA AATCTGAAGA chrX:16961568-16961648 40 2.38e-04 AGTGCCAGGC GCAAGAGA CGCAGACAGT chrV:6267567-6267647 10 2.38e-04 CGGACAGCG GCAAGAGA AGATCGGTTG chrX:1446870-1446950 72 2.53e-04 CCCGCAGTCG ACGAGAGA G chrIV:11961847-11961927 63 2.88e-04 TAGTTTTTAA TAAAGAAA ACTTTTTTGC chrIV:1070550-1070630 47 3.04e-04 GAAGAGACTG GTGAGAGA ACGGGACGGA chrX:1389504-1389584 26 3.04e-04 GTAATATCAT GTGAGAGA CTTTATTATA chrII:10502859-10502939 71 3.54e-04 GAGAGATCGG GAGAAAAA TG chrII:9061916-9061996 40 3.54e-04 CAAGAGAGCA GAGAAAAA CTCTGGCCca chrI:7518517-7518597 64 3.54e-04 GCGAAGAAGA GAGGGAAA GGGCCGCCT chrIII:4899870-4899950 42 3.69e-04 GGCCGCTACG CAGAGAAA CCGCCTACTT chrIV:6321860-6321940 19 3.69e-04 ATGTGTTACG CAGAGAAA ACGGTAAACT chrX:15353977-15354057 45 3.69e-04 CCGAGGTGGG CAGAGAAA AGAAAAGACG chrII:4851765-4851845 34 4.17e-04 CCGCTGAAAA TCAAGAAA CGCGCAAGGG chrIV:4727980-4728060 65 4.17e-04 cgtaaaattt gagaaaga tctcgcag chrIV:7845661-7845741 42 4.17e-04 CACTCGACGT TCAAGAAA CAACAGGGCA chrIII:10844993-10845073 64 4.17e-04 ACTTGGCGCA TCAAGAAA CGCGCAAGC chrV:13028971-13029051 14 4.17e-04 TCATAATTAC GAGGGAGA CCTCCCCTTG chrX:993214-993294 34 4.17e-04 TGCGGCGGGT GAGGGAGA AGGCCCCCCT chrV:11711952-11712032 17 4.17e-04 AGGCGAATCT GAGAAAGA TGCATGTGAA chrX:6743970-6744050 28 4.49e-04 ATCAGTTGGA AAAAGAAA AGGGTGAACC chrV:14055173-14055253 8 4.49e-04 CATTGTT AAAAGAAA ATTAGGTGCT chrIV:8795167-8795247 5 4.49e-04 AGAG AAAAGAAA GGAGCGAACA chrX:11031337-11031417 57 5.09e-04 GCTGGGAGAG GAGAGACA GGCACCCGGC chrV:12343663-12343743 49 5.09e-04 TGTTCGCAGT GCGAAAAA TGCGTCAGTG chrIII:4237786-4237866 12 5.09e-04 GTGATGAGAA GCGGGAAA ACGGGGAGAA chrIV:10342222-10342302 40 5.09e-04 GGAAAAGATG GAGAGACA GGAGGAGGAC chrIII:4223765-4223845 30 5.09e-04 GAAGGGAGTA TCAAGAGA CGCAGACATT chrX:15345559-15345639 3 5.09e-04 cg gcgaaaaa ccattttccg chrX:727850-727930 71 5.87e-04 TCAATGGGTT GCGGGAGA CG chrV:9765784-9765864 21 5.87e-04 AGGAAGGATA TTGAGAAA GCGGCAAAGG chrX:16446026-16446106 42 6.47e-04 GCATGAGGTT TTGAGAGA TAGTGTGCAC chrV:12465567-12465647 22 6.47e-04 TCTTCAGAAA TTGAGAGA TGTTATTCCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGAGARA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:10868937-10869017 1.6e-05 57_[+1]_15 chrX:14841130-14841210 1.6e-05 54_[+1]_18 chrX:7823217-7823297 3.2e-05 39_[+1]_33 chrX:14708407-14708487 3.2e-05 70_[+1]_2 chrI:12039922-12040002 3.2e-05 42_[+1]_30 chrIII:2597203-2597283 3.2e-05 18_[+1]_54 chrV:6224693-6224773 3.2e-05 12_[+1]_60 chrI:10769865-10769945 3.2e-05 5_[+1]_67 chrII:5337008-5337088 3.2e-05 12_[+1]_60 chrX:5729219-5729299 3.2e-05 53_[+1]_19 chrIV:16492469-16492549 3.2e-05 45_[+1]_27 chrX:15189388-15189468 3.2e-05 40_[+1]_32 chrI:1958498-1958578 4.6e-05 19_[+1]_53 chrV:15766351-15766431 4.6e-05 3_[+1]_69 chrV:11704725-11704805 4.6e-05 61_[+1]_11 chrI:4789913-4789993 6.1e-05 49_[+1]_23 chrIV:2219544-2219624 6.1e-05 16_[+1]_56 chrI:13756511-13756591 6.1e-05 23_[+1]_49 chrIII:7155832-7155912 7.8e-05 28_[+1]_44 chrV:12025881-12025961 7.8e-05 46_[+1]_26 chrII:11761914-11761994 7.8e-05 53_[+1]_19 chrX:7334472-7334552 9.5e-05 6_[+1]_66 chrX:10766277-10766357 0.00013 13_[+1]_59 chrIII:10848985-10849065 0.00013 65_[+1]_7 chrIII:8447105-8447185 0.00013 34_[+1]_38 chrII:6913393-6913473 0.00013 58_[+1]_14 chrI:16949-17029 0.00013 29_[+1]_43 chrI:5379797-5379877 0.00013 72_[+1] chrIII:8795817-8795897 0.00014 49_[+1]_23 chrV:6227601-6227681 0.00014 17_[+1]_55 chrIV:10403357-10403437 0.00014 [+1]_72 chrX:16604740-16604820 0.00018 54_[+1]_18 chrIV:6097259-6097339 0.00018 41_[+1]_31 chrX:4222950-4223030 0.00018 12_[+1]_60 chrX:6371357-6371437 0.00019 5_[+1]_67 chrIII:9868269-9868349 0.00021 3_[+1]_69 chrX:12393975-12394055 0.00022 46_[+1]_26 chrV:17749344-17749424 0.00022 19_[+1]_53 chrX:16961568-16961648 0.00024 39_[+1]_33 chrV:6267567-6267647 0.00024 9_[+1]_63 chrX:1446870-1446950 0.00025 71_[+1]_1 chrIV:11961847-11961927 0.00029 62_[+1]_10 chrIV:1070550-1070630 0.0003 46_[+1]_26 chrX:1389504-1389584 0.0003 25_[+1]_47 chrII:10502859-10502939 0.00035 70_[+1]_2 chrII:9061916-9061996 0.00035 39_[+1]_33 chrI:7518517-7518597 0.00035 63_[+1]_9 chrIII:4899870-4899950 0.00037 41_[+1]_31 chrIV:6321860-6321940 0.00037 18_[+1]_54 chrX:15353977-15354057 0.00037 44_[+1]_28 chrII:4851765-4851845 0.00042 33_[+1]_39 chrIV:4727980-4728060 0.00042 64_[+1]_8 chrIV:7845661-7845741 0.00042 41_[+1]_31 chrIII:10844993-10845073 0.00042 63_[+1]_9 chrV:13028971-13029051 0.00042 13_[+1]_59 chrX:993214-993294 0.00042 33_[+1]_39 chrV:11711952-11712032 0.00042 16_[+1]_56 chrX:6743970-6744050 0.00045 27_[+1]_45 chrV:14055173-14055253 0.00045 7_[+1]_65 chrIV:8795167-8795247 0.00045 4_[+1]_68 chrX:11031337-11031417 0.00051 56_[+1]_16 chrV:12343663-12343743 0.00051 48_[+1]_24 chrIII:4237786-4237866 0.00051 11_[+1]_61 chrIV:10342222-10342302 0.00051 39_[+1]_33 chrIII:4223765-4223845 0.00051 29_[+1]_43 chrX:15345559-15345639 0.00051 2_[+1]_70 chrX:727850-727930 0.00059 70_[+1]_2 chrV:9765784-9765864 0.00059 20_[+1]_52 chrX:16446026-16446106 0.00065 41_[+1]_31 chrV:12465567-12465647 0.00065 21_[+1]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGAGARA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GMGAGARA width=8 seqs=70 chrII:10868937-10869017 ( 58) GAGAGAAA 1 chrX:14841130-14841210 ( 55) GAGAGAAA 1 chrX:7823217-7823297 ( 40) GAGAGAGA 1 chrX:14708407-14708487 ( 71) GAGAGAGA 1 chrI:12039922-12040002 ( 43) GAGAGAGA 1 chrIII:2597203-2597283 ( 19) GAGAGAGA 1 chrV:6224693-6224773 ( 13) GAGAGAGA 1 chrI:10769865-10769945 ( 6) GAGAGAGA 1 chrII:5337008-5337088 ( 13) GAGAGAGA 1 chrX:5729219-5729299 ( 54) GAGAGAGA 1 chrIV:16492469-16492549 ( 46) GAGAGAGA 1 chrX:15189388-15189468 ( 41) GAGAGAGA 1 chrI:1958498-1958578 ( 20) GCGAGAAA 1 chrV:15766351-15766431 ( 4) GCGAGAAA 1 chrV:11704725-11704805 ( 62) GCGAGAAA 1 chrI:4789913-4789993 ( 50) GCGAGAGA 1 chrIV:2219544-2219624 ( 17) GCGAGAGA 1 chrI:13756511-13756591 ( 24) GCGAGAGA 1 chrIII:7155832-7155912 ( 29) TAGAGAAA 1 chrV:12025881-12025961 ( 47) TAGAGAAA 1 chrII:11761914-11761994 ( 54) TAGAGAAA 1 chrX:7334472-7334552 ( 7) TAGAGAGA 1 chrX:10766277-10766357 ( 14) GAAAGAAA 1 chrIII:10848985-10849065 ( 66) TCGAGAAA 1 chrIII:8447105-8447185 ( 35) TCGAGAAA 1 chrII:6913393-6913473 ( 59) GAAAGAAA 1 chrI:16949-17029 ( 30) TCGAGAAA 1 chrI:5379797-5379877 ( 73) TCGAGAAA 1 chrIII:8795817-8795897 ( 50) AAGAGAAA 1 chrV:6227601-6227681 ( 18) AAGAGAAA 1 chrIV:10403357-10403437 ( 1) AAGAGAAA 1 chrX:16604740-16604820 ( 55) GAAAGAGA 1 chrIV:6097259-6097339 ( 42) GAAAGAGA 1 chrX:4222950-4223030 ( 13) TCGAGAGA 1 chrX:6371357-6371437 ( 6) AAGAGAGA 1 chrIII:9868269-9868349 ( 4) GCAAGAAA 1 chrX:12393975-12394055 ( 47) ACGAGAAA 1 chrV:17749344-17749424 ( 20) ACGAGAAA 1 chrX:16961568-16961648 ( 40) GCAAGAGA 1 chrV:6267567-6267647 ( 10) GCAAGAGA 1 chrX:1446870-1446950 ( 72) ACGAGAGA 1 chrIV:11961847-11961927 ( 63) TAAAGAAA 1 chrIV:1070550-1070630 ( 47) GTGAGAGA 1 chrX:1389504-1389584 ( 26) GTGAGAGA 1 chrII:10502859-10502939 ( 71) GAGAAAAA 1 chrII:9061916-9061996 ( 40) GAGAAAAA 1 chrI:7518517-7518597 ( 64) GAGGGAAA 1 chrIII:4899870-4899950 ( 42) CAGAGAAA 1 chrIV:6321860-6321940 ( 19) CAGAGAAA 1 chrX:15353977-15354057 ( 45) CAGAGAAA 1 chrII:4851765-4851845 ( 34) TCAAGAAA 1 chrIV:4727980-4728060 ( 65) GAGAAAGA 1 chrIV:7845661-7845741 ( 42) TCAAGAAA 1 chrIII:10844993-10845073 ( 64) TCAAGAAA 1 chrV:13028971-13029051 ( 14) GAGGGAGA 1 chrX:993214-993294 ( 34) GAGGGAGA 1 chrV:11711952-11712032 ( 17) GAGAAAGA 1 chrX:6743970-6744050 ( 28) AAAAGAAA 1 chrV:14055173-14055253 ( 8) AAAAGAAA 1 chrIV:8795167-8795247 ( 5) AAAAGAAA 1 chrX:11031337-11031417 ( 57) GAGAGACA 1 chrV:12343663-12343743 ( 49) GCGAAAAA 1 chrIII:4237786-4237866 ( 12) GCGGGAAA 1 chrIV:10342222-10342302 ( 40) GAGAGACA 1 chrIII:4223765-4223845 ( 30) TCAAGAGA 1 chrX:15345559-15345639 ( 3) GCGAAAAA 1 chrX:727850-727930 ( 71) GCGGGAGA 1 chrV:9765784-9765864 ( 21) TTGAGAAA 1 chrX:16446026-16446106 ( 42) TTGAGAGA 1 chrV:12465567-12465647 ( 22) TTGAGAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGAGARA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.8035 E= 8.6e-007 -84 -245 122 -13 116 61 -1277 -189 -26 -1277 168 -1277 186 -1277 -178 -1277 -158 -1277 190 -1277 197 -1277 -1277 -1277 105 -303 85 -1277 197 -1277 -1277 -1277 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGAGARA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 70 E= 8.6e-007 0.142857 0.042857 0.571429 0.242857 0.571429 0.357143 0.000000 0.071429 0.214286 0.000000 0.785714 0.000000 0.928571 0.000000 0.071429 0.000000 0.085714 0.000000 0.914286 0.000000 1.000000 0.000000 0.000000 0.000000 0.528571 0.028571 0.442857 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGAGARA MEME-1 regular expression -------------------------------------------------------------------------------- [GT][AC][GA]AGA[AG]A -------------------------------------------------------------------------------- Time 7.26 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCGTCTC MEME-2 width = 8 sites = 26 llr = 226 E-value = 3.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :1:::::: pos.-specific C 22a3:a:a probability G :5:7:::: matrix T 82::a:a: bits 2.1 * * 1.9 * **** 1.7 * **** 1.5 * **** Relative 1.3 * ****** Entropy 1.0 * ****** (12.6 bits) 0.8 * ****** 0.6 * ****** 0.4 * ****** 0.2 ******** 0.0 -------- Multilevel TGCGTCTC consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:8426910-8426990 20 1.43e-05 ATTAGGTGCC TGCGTCTC TTCATTGATG chrIII:12612630-12612710 36 1.43e-05 ACTCGATGTC TGCGTCTC GGTGTCATTT chrI:12039922-12040002 69 1.43e-05 GACAAGTGCC TGCGTCTC TTAC chrII:10502859-10502939 46 1.43e-05 CCAACCTGTC TGCGTCTC CGAGGCGGAG chrV:20778337-20778417 8 1.43e-05 CGATCTC TGCGTCTC CCTCGTTTAT chrI:16949-17029 57 1.43e-05 AGCCGCTCTC TGCGTCTC TCACCCTTCA chrIII:9668062-9668142 69 1.43e-05 AGACTCTGTC TGCGTCTC AATG chrIV:6919501-6919581 48 1.43e-05 TCGCACTTTC TGCGTCTC ACTCTCTAAT chrX:11207105-11207185 64 1.43e-05 CACCGATGTC TGCGTCTC TAATGATAT chrX:14744587-14744667 1 1.43e-05 . TGCGTCTC TTCGTCTCCG chrIV:1067532-1067612 40 1.43e-05 GAAAAATGCC TGCGTCTC TTCGTCTCGC chrIII:10407465-10407545 45 5.61e-05 CTGAGTGTCG CGCGTCTC TCACGGCCAC chrV:10951885-10951965 58 5.61e-05 TCTGCATCTC TTCGTCTC CCATCCCCTC chrV:14366706-14366786 3 5.61e-05 CT CGCGTCTC CCGCGCGTCA chrX:11467376-11467456 66 6.98e-05 TTTCTTGTTC TCCGTCTC ACATGCT chrIII:11054954-11055034 7 8.47e-05 GTTCTC TACGTCTC GTGAACTTGT chrII:5901811-5901891 1 8.47e-05 . TACGTCTC TGTGGCACCT chrX:5165201-5165281 8 1.12e-04 TCCTCTC TTCCTCTC CGCTGGTGCC chrII:11620173-11620253 67 1.25e-04 CGTTCTCTCG TCCCTCTC GGCGCC chrII:14405219-14405299 73 1.25e-04 ATATGCCGTC TCCCTCTC chrV:10715934-10716014 5 1.38e-04 CGCG CTCGTCTC GCGCGCACGT chrIV:14327026-14327106 15 1.50e-04 TCGCGGCCTG CCCGTCTC CCTTTCATCG chrX:6742243-6742323 2 1.65e-04 C TACCTCTC GCCGTCTGCC chrI:461714-461794 51 1.91e-04 CAGTGGTGTA CTCCTCTC GGGTGAAAGA chrIV:6321860-6321940 64 1.91e-04 CGGCCGTGTA CTCCTCTC GAACAAATT chrX:593486-593566 40 2.47e-04 ATGCCACCAG TGTCTCTC ACCTTCACAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:8426910-8426990 1.4e-05 19_[+2]_53 chrIII:12612630-12612710 1.4e-05 35_[+2]_37 chrI:12039922-12040002 1.4e-05 68_[+2]_4 chrII:10502859-10502939 1.4e-05 45_[+2]_27 chrV:20778337-20778417 1.4e-05 7_[+2]_65 chrI:16949-17029 1.4e-05 56_[+2]_16 chrIII:9668062-9668142 1.4e-05 68_[+2]_4 chrIV:6919501-6919581 1.4e-05 47_[+2]_25 chrX:11207105-11207185 1.4e-05 63_[+2]_9 chrX:14744587-14744667 1.4e-05 [+2]_72 chrIV:1067532-1067612 1.4e-05 39_[+2]_33 chrIII:10407465-10407545 5.6e-05 44_[+2]_28 chrV:10951885-10951965 5.6e-05 57_[+2]_15 chrV:14366706-14366786 5.6e-05 2_[+2]_70 chrX:11467376-11467456 7e-05 65_[+2]_7 chrIII:11054954-11055034 8.5e-05 6_[+2]_66 chrII:5901811-5901891 8.5e-05 [+2]_72 chrX:5165201-5165281 0.00011 7_[+2]_65 chrII:11620173-11620253 0.00012 66_[+2]_6 chrII:14405219-14405299 0.00012 72_[+2] chrV:10715934-10716014 0.00014 4_[+2]_68 chrIV:14327026-14327106 0.00015 14_[+2]_58 chrX:6742243-6742323 0.00016 1_[+2]_71 chrI:461714-461794 0.00019 50_[+2]_22 chrIV:6321860-6321940 0.00019 63_[+2]_9 chrX:593486-593566 0.00025 39_[+2]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCGTCTC width=8 seqs=26 chrI:8426910-8426990 ( 20) TGCGTCTC 1 chrIII:12612630-12612710 ( 36) TGCGTCTC 1 chrI:12039922-12040002 ( 69) TGCGTCTC 1 chrII:10502859-10502939 ( 46) TGCGTCTC 1 chrV:20778337-20778417 ( 8) TGCGTCTC 1 chrI:16949-17029 ( 57) TGCGTCTC 1 chrIII:9668062-9668142 ( 69) TGCGTCTC 1 chrIV:6919501-6919581 ( 48) TGCGTCTC 1 chrX:11207105-11207185 ( 64) TGCGTCTC 1 chrX:14744587-14744667 ( 1) TGCGTCTC 1 chrIV:1067532-1067612 ( 40) TGCGTCTC 1 chrIII:10407465-10407545 ( 45) CGCGTCTC 1 chrV:10951885-10951965 ( 58) TTCGTCTC 1 chrV:14366706-14366786 ( 3) CGCGTCTC 1 chrX:11467376-11467456 ( 66) TCCGTCTC 1 chrIII:11054954-11055034 ( 7) TACGTCTC 1 chrII:5901811-5901891 ( 1) TACGTCTC 1 chrX:5165201-5165281 ( 8) TTCCTCTC 1 chrII:11620173-11620253 ( 67) TCCCTCTC 1 chrII:14405219-14405299 ( 73) TCCCTCTC 1 chrV:10715934-10716014 ( 5) CTCGTCTC 1 chrIV:14327026-14327106 ( 15) CCCGTCTC 1 chrX:6742243-6742323 ( 2) TACCTCTC 1 chrI:461714-461794 ( 51) CTCCTCTC 1 chrIV:6321860-6321940 ( 64) CTCCTCTC 1 chrX:593486-593566 ( 40) TGTCTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.98426 E= 3.0e+000 -1134 -2 -1134 154 -115 -61 114 -46 -1134 204 -1134 -278 -1134 20 158 -1134 -1134 -1134 -1134 192 -1134 209 -1134 -1134 -1134 -1134 -1134 192 -1134 209 -1134 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 3.0e+000 0.000000 0.230769 0.000000 0.769231 0.115385 0.153846 0.538462 0.192308 0.000000 0.961538 0.000000 0.038462 0.000000 0.269231 0.730769 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-2 regular expression -------------------------------------------------------------------------------- [TC]GC[GC]TCTC -------------------------------------------------------------------------------- Time 10.93 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCTGGCG MEME-3 width = 8 sites = 24 llr = 219 E-value = 6.4e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCTGGCG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::21: pos.-specific C 1:a:::9: probability G :a::98:a matrix T 9::a1::: bits 2.1 * 1.9 ** 1.7 **** * 1.5 ***** ** Relative 1.3 ***** ** Entropy 1.0 ******** (13.2 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGCTGGCG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGGCG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:1094311-1094391 9 1.39e-05 ATTGAAAT TGCTGGCG GGTCCCGCCG chrII:4851765-4851845 56 1.39e-05 CAAGGGGTTA TGCTGGCG CTTTTTCAGT chrV:9547001-9547081 46 1.39e-05 CACCCATTTC TGCTGGCG TATAAAAGAA chrIII:10334148-10334228 10 1.39e-05 GAGACGCGC TGCTGGCG CACTTCTCGT chrIII:13466363-13466443 41 1.39e-05 AAGGAGTGGT TGCTGGCG TACTTTGCGA chrV:15766351-15766431 35 1.39e-05 CCAGAGGGGC TGCTGGCG CATTTCCAGT chrI:12995726-12995806 51 1.39e-05 CAAGCGCTCG TGCTGGCG CATTTGCCGA chrI:13756511-13756591 42 1.39e-05 CACAGAGACT TGCTGGCG CAACACGTGA chrX:10377813-10377893 7 1.39e-05 GAAGAC TGCTGGCG CGTTTCTCTT chrIV:6323823-6323903 60 2.83e-05 CGCAGCGACC TGCTGACG CCGCATTTAC chrV:11521601-11521681 28 2.83e-05 CATTGTTCCC TGCTGACG CGCATTGAGC chrX:5244239-5244319 24 2.83e-05 CTAACTCTAG TGCTGACG CGTTTCTCGT chrX:8368276-8368356 37 2.83e-05 GCCTGCTCAA TGCTGACG CATTGTTTGC chrX:11207105-11207185 42 2.83e-05 TCCTATCGCT TGCTGACG TAGACACCGA chrI:9669242-9669322 22 4.06e-05 AAGCAACACT CGCTGGCG CCTTTCTCTC chrI:11374399-11374479 47 4.06e-05 GTGGAGTACA CGCTGGCG TGGCCGAGCA chrV:12291766-12291846 41 7.07e-05 GTGACCGCGC TGCTTGCG CACTCTCCGA chrI:9163484-9163564 62 7.07e-05 taacAGATCT TGCTGGAG GAGTTGACAA chrV:10871543-10871623 15 7.07e-05 AACGCCTGAT TGCTGGAG ACGGAGACGG chrII:410985-411065 55 7.07e-05 AGAGCGCGAA TGCTTGCG CGCAAAGGGA chrX:10146743-10146823 31 8.39e-05 TATTGATCGC TGCTGCCG GGGGCCCCTA chrII:11980319-11980399 9 1.13e-04 ATCTAATT TGCTGGCA GTATGCCAGT chrV:11705640-11705720 25 1.13e-04 GAGACGATAC TGCTGGGG CGTGCTTGTC chrX:593486-593566 73 1.28e-04 GTTTCTCTGC TTCTGGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGGCG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:1094311-1094391 1.4e-05 8_[+3]_64 chrII:4851765-4851845 1.4e-05 55_[+3]_17 chrV:9547001-9547081 1.4e-05 45_[+3]_27 chrIII:10334148-10334228 1.4e-05 9_[+3]_63 chrIII:13466363-13466443 1.4e-05 40_[+3]_32 chrV:15766351-15766431 1.4e-05 34_[+3]_38 chrI:12995726-12995806 1.4e-05 50_[+3]_22 chrI:13756511-13756591 1.4e-05 41_[+3]_31 chrX:10377813-10377893 1.4e-05 6_[+3]_66 chrIV:6323823-6323903 2.8e-05 59_[+3]_13 chrV:11521601-11521681 2.8e-05 27_[+3]_45 chrX:5244239-5244319 2.8e-05 23_[+3]_49 chrX:8368276-8368356 2.8e-05 36_[+3]_36 chrX:11207105-11207185 2.8e-05 41_[+3]_31 chrI:9669242-9669322 4.1e-05 21_[+3]_51 chrI:11374399-11374479 4.1e-05 46_[+3]_26 chrV:12291766-12291846 7.1e-05 40_[+3]_32 chrI:9163484-9163564 7.1e-05 61_[+3]_11 chrV:10871543-10871623 7.1e-05 14_[+3]_58 chrII:410985-411065 7.1e-05 54_[+3]_18 chrX:10146743-10146823 8.4e-05 30_[+3]_42 chrII:11980319-11980399 0.00011 8_[+3]_64 chrV:11705640-11705720 0.00011 24_[+3]_48 chrX:593486-593566 0.00013 72_[+3] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGGCG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCTGGCG width=8 seqs=24 chrIV:1094311-1094391 ( 9) TGCTGGCG 1 chrII:4851765-4851845 ( 56) TGCTGGCG 1 chrV:9547001-9547081 ( 46) TGCTGGCG 1 chrIII:10334148-10334228 ( 10) TGCTGGCG 1 chrIII:13466363-13466443 ( 41) TGCTGGCG 1 chrV:15766351-15766431 ( 35) TGCTGGCG 1 chrI:12995726-12995806 ( 51) TGCTGGCG 1 chrI:13756511-13756591 ( 42) TGCTGGCG 1 chrX:10377813-10377893 ( 7) TGCTGGCG 1 chrIV:6323823-6323903 ( 60) TGCTGACG 1 chrV:11521601-11521681 ( 28) TGCTGACG 1 chrX:5244239-5244319 ( 24) TGCTGACG 1 chrX:8368276-8368356 ( 37) TGCTGACG 1 chrX:11207105-11207185 ( 42) TGCTGACG 1 chrI:9669242-9669322 ( 22) CGCTGGCG 1 chrI:11374399-11374479 ( 47) CGCTGGCG 1 chrV:12291766-12291846 ( 41) TGCTTGCG 1 chrI:9163484-9163564 ( 62) TGCTGGAG 1 chrV:10871543-10871623 ( 15) TGCTGGAG 1 chrII:410985-411065 ( 55) TGCTTGCG 1 chrX:10146743-10146823 ( 31) TGCTGCCG 1 chrII:11980319-11980399 ( 9) TGCTGGCA 1 chrV:11705640-11705720 ( 25) TGCTGGGG 1 chrX:593486-593566 ( 73) TTCTGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGGCG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0167 E= 6.4e-003 -1123 -149 -1123 179 -1123 -1123 197 -267 -1123 209 -1123 -1123 -1123 -1123 -1123 191 -1123 -1123 190 -167 -30 -249 161 -1123 -162 190 -255 -1123 -262 -1123 197 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGGCG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 6.4e-003 0.000000 0.083333 0.000000 0.916667 0.000000 0.000000 0.958333 0.041667 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.916667 0.083333 0.208333 0.041667 0.750000 0.000000 0.083333 0.875000 0.041667 0.000000 0.041667 0.000000 0.958333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCTGGCG MEME-3 regular expression -------------------------------------------------------------------------------- TGCTG[GA]CG -------------------------------------------------------------------------------- Time 14.52 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGAGAGG MEME-4 width = 8 sites = 11 llr = 115 E-value = 2.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGAGAGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::a:8:: pos.-specific C 9a:::::: probability G 1:a:a:aa matrix T :::::2:: bits 2.1 ** * ** 1.9 **** ** 1.7 ***** ** 1.5 ***** ** Relative 1.3 ******** Entropy 1.0 ******** (15.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCGAGAGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGAGAGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:10848985-10849065 7 1.29e-05 GCTTAT CCGAGAGG AGTACGCAGT chrIV:6323823-6323903 12 1.29e-05 CGGTCTTTGT CCGAGAGG ACTACGAAGT chrIII:7520791-7520871 22 1.29e-05 AATAAGTTGT CCGAGAGG AGTTCACCAC chrV:6227601-6227681 69 1.29e-05 AATGGAGAAA CCGAGAGG GAAG chrIII:10844993-10845073 6 1.29e-05 CTTGT CCGAGAGG AGTACGCAGG chrIII:9868269-9868349 19 1.29e-05 AAATTATTTT CCGAGAGG ACTCCGCCAG chrII:156048-156128 25 1.29e-05 TTCAGGTAGT CCGAGAGG ACTACGCGTG chrX:12656781-12656861 12 1.29e-05 GAGCGAGGCG CCGAGAGG AGCGCTTGAC chrV:53452-53532 34 2.63e-05 tttcgcatgg ccgagtgg ttagtacgta chrI:11374399-11374479 33 2.63e-05 TCCAGCTTGT CCGAGTGG AGTACACGCT chrIV:1070550-1070630 17 3.99e-05 CAGCGCCCCG GCGAGAGG AGCGGCGTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGAGAGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:10848985-10849065 1.3e-05 6_[+4]_66 chrIV:6323823-6323903 1.3e-05 11_[+4]_61 chrIII:7520791-7520871 1.3e-05 21_[+4]_51 chrV:6227601-6227681 1.3e-05 68_[+4]_4 chrIII:10844993-10845073 1.3e-05 5_[+4]_67 chrIII:9868269-9868349 1.3e-05 18_[+4]_54 chrII:156048-156128 1.3e-05 24_[+4]_48 chrX:12656781-12656861 1.3e-05 11_[+4]_61 chrV:53452-53532 2.6e-05 33_[+4]_39 chrI:11374399-11374479 2.6e-05 32_[+4]_40 chrIV:1070550-1070630 4e-05 16_[+4]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGAGAGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGAGAGG width=8 seqs=11 chrIII:10848985-10849065 ( 7) CCGAGAGG 1 chrIV:6323823-6323903 ( 12) CCGAGAGG 1 chrIII:7520791-7520871 ( 22) CCGAGAGG 1 chrV:6227601-6227681 ( 69) CCGAGAGG 1 chrIII:10844993-10845073 ( 6) CCGAGAGG 1 chrIII:9868269-9868349 ( 19) CCGAGAGG 1 chrII:156048-156128 ( 25) CCGAGAGG 1 chrX:12656781-12656861 ( 12) CCGAGAGG 1 chrV:53452-53532 ( 34) CCGAGTGG 1 chrI:11374399-11374479 ( 33) CCGAGTGG 1 chrIV:1070550-1070630 ( 17) GCGAGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGAGAGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0506 E= 2.2e+001 -1010 196 -143 -1010 -1010 209 -1010 -1010 -1010 -1010 203 -1010 197 -1010 -1010 -1010 -1010 -1010 203 -1010 168 -1010 -1010 -54 -1010 -1010 203 -1010 -1010 -1010 203 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGAGAGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 2.2e+001 0.000000 0.909091 0.090909 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.818182 0.000000 0.000000 0.181818 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGAGAGG MEME-4 regular expression -------------------------------------------------------------------------------- CCGAGAGG -------------------------------------------------------------------------------- Time 18.07 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCCAGCA MEME-5 width = 8 sites = 12 llr = 122 E-value = 1.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCCAGCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::a:3a pos.-specific C a:8a::8: probability G :a:::a:: matrix T ::3::::: bits 2.1 ** * * 1.9 ** *** * 1.7 ** *** * 1.5 ** *** * Relative 1.3 ******** Entropy 1.0 ******** (14.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGCCAGCA consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCAGCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:17249835-17249915 59 1.18e-05 TCGCGATGTG CGCCAGCA GCTGTCTGCG chrIV:4049666-4049746 20 1.18e-05 TCAAAAAGTG CGCCAGCA GTCGTCCTTT chrX:12393975-12394055 57 1.18e-05 ACGAGAAATG CGCCAGCA ATCCCCTTGG chrIII:10844993-10845073 40 1.18e-05 ACGGAGTATG CGCCAGCA GACGTTACTT chrV:9789977-9790057 27 1.18e-05 ACGAAGAACG CGCCAGCA AGCGACTCTG chrI:13756511-13756591 72 1.18e-05 ACTTGAATCG CGCCAGCA G chrI:8816527-8816607 59 2.47e-05 GTTGGCTGTT CGCCAGAA TTCGGTGGAG chrIII:9868269-9868349 31 2.47e-05 GAGAGGACTC CGCCAGAA TACGGCCGTA chrX:13514593-13514673 71 2.47e-05 TTCACAGACT CGCCAGAA CT chrV:12291766-12291846 10 3.81e-05 CAAAAACTG CGTCAGCA CAGAAGCGCG chrI:11930102-11930182 29 3.81e-05 ACCCGGGATG CGTCAGCA AACACTCACG chrIII:10848985-10849065 42 3.81e-05 GCGACAAGTG CGTCAGCA GTGGTTGCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCAGCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:17249835-17249915 1.2e-05 58_[+5]_14 chrIV:4049666-4049746 1.2e-05 19_[+5]_53 chrX:12393975-12394055 1.2e-05 56_[+5]_16 chrIII:10844993-10845073 1.2e-05 39_[+5]_33 chrV:9789977-9790057 1.2e-05 26_[+5]_46 chrI:13756511-13756591 1.2e-05 71_[+5]_1 chrI:8816527-8816607 2.5e-05 58_[+5]_14 chrIII:9868269-9868349 2.5e-05 30_[+5]_42 chrX:13514593-13514673 2.5e-05 70_[+5]_2 chrV:12291766-12291846 3.8e-05 9_[+5]_63 chrI:11930102-11930182 3.8e-05 28_[+5]_44 chrIII:10848985-10849065 3.8e-05 41_[+5]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCAGCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCCAGCA width=8 seqs=12 chrIV:17249835-17249915 ( 59) CGCCAGCA 1 chrIV:4049666-4049746 ( 20) CGCCAGCA 1 chrX:12393975-12394055 ( 57) CGCCAGCA 1 chrIII:10844993-10845073 ( 40) CGCCAGCA 1 chrV:9789977-9790057 ( 27) CGCCAGCA 1 chrI:13756511-13756591 ( 72) CGCCAGCA 1 chrI:8816527-8816607 ( 59) CGCCAGAA 1 chrIII:9868269-9868349 ( 31) CGCCAGAA 1 chrX:13514593-13514673 ( 71) CGCCAGAA 1 chrV:12291766-12291846 ( 10) CGTCAGCA 1 chrI:11930102-11930182 ( 29) CGTCAGCA 1 chrIII:10848985-10849065 ( 42) CGTCAGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCAGCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2284 E= 1.1e+002 -1023 209 -1023 -1023 -1023 -1023 203 -1023 -1023 168 -1023 -8 -1023 209 -1023 -1023 197 -1023 -1023 -1023 -1023 -1023 203 -1023 -3 168 -1023 -1023 197 -1023 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCAGCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.1e+002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCAGCA MEME-5 regular expression -------------------------------------------------------------------------------- CG[CT]CAG[CA]A -------------------------------------------------------------------------------- Time 21.55 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:11704725-11704805 6.75e-02 61_[+1(4.64e-05)]_11 chrV:11711952-11712032 4.72e-01 80 chrV:11706510-11706590 6.06e-01 80 chrM:182-262 9.96e-01 80 chrM:1821-1901 8.35e-01 80 chrM:5258-5338 7.63e-01 80 chrM:1549-1629 9.98e-01 80 chrM:10154-10234 9.67e-01 80 chrM:3608-3688 9.57e-01 80 chrM:11413-11493 8.19e-01 80 chrM:8173-8253 9.99e-01 80 chrM:11107-11187 9.40e-01 80 chrM:10825-10905 4.12e-01 80 chrV:11705640-11705720 5.16e-02 80 chrM:7332-7412 4.41e-01 80 chrX:12656781-12656861 1.05e-02 11_[+4(1.29e-05)]_61 chrM:3027-3107 9.16e-01 80 chrV:11703832-11703912 6.13e-01 80 chrM:979-1059 9.05e-01 80 chrX:2599036-2599116 5.27e-01 80 chrM:7130-7210 9.97e-01 80 chrV:14366706-14366786 2.34e-02 2_[+2(5.61e-05)]_70 chrM:6037-6117 8.82e-01 80 chrII:11761914-11761994 3.20e-01 53_[+1(7.81e-05)]_19 chrM:9078-9158 9.19e-01 80 chrX:10637380-10637460 1.72e-01 80 chrX:11473438-11473518 1.17e-01 80 chrM:2127-2207 1.61e-01 80 chrM:4660-4740 3.32e-01 80 chrX:2192099-2192179 4.38e-01 80 chrX:15189388-15189468 7.27e-03 40_[+1(3.16e-05)]_10_[+1(3.16e-05)]_\ 14 chrII:11756856-11756936 1.43e-01 80 chrM:6237-6317 9.88e-01 80 chrM:12620-12700 1.00e+00 80 chrM:2330-2410 2.80e-01 80 chrII:10527711-10527791 3.06e-01 80 chrM:1186-1266 9.37e-01 80 chrM:12412-12492 7.04e-01 80 chrV:10951885-10951965 4.36e-02 57_[+2(5.61e-05)]_15 chrM:9285-9365 9.46e-01 80 chrV:7728285-7728365 2.63e-01 80 chrV:12025881-12025961 1.57e-02 46_[+1(7.81e-05)]_26 chrX:15345559-15345639 1.78e-01 80 chrV:17749344-17749424 9.09e-02 80 chrIV:10403357-10403437 6.53e-02 80 chrX:10377813-10377893 3.27e-03 6_[+3(1.39e-05)]_66 chrX:11791712-11791792 6.23e-01 80 chrV:12036535-12036615 8.92e-01 80 chrII:5901811-5901891 1.60e-02 [+2(8.47e-05)]_72 chrX:16481150-16481230 9.35e-01 80 chrX:17544487-17544567 4.00e-01 80 chrX:4142307-4142387 3.98e-01 80 chrIV:1067532-1067612 1.02e-02 39_[+2(1.43e-05)]_[+2(5.61e-05)]_25 chrII:7003066-7003146 5.27e-01 80 chrV:10715934-10716014 1.09e-01 80 chrX:10145098-10145178 3.46e-01 80 chrI:7518517-7518597 1.06e-01 80 chrX:1389504-1389584 4.10e-01 80 chrV:11707614-11707694 8.41e-01 80 chrII:410985-411065 3.85e-02 54_[+3(7.07e-05)]_18 chrV:9765784-9765864 2.39e-01 80 chrX:4960515-4960595 2.53e-01 80 chrX:4222950-4223030 1.15e-01 80 chrIV:5607299-5607379 6.66e-01 80 chrX:14561630-14561710 3.12e-01 80 chrI:9373172-9373252 6.67e-01 80 chrX:8638718-8638798 7.91e-01 80 chrX:9237945-9238025 9.99e-01 80 chrI:9381728-9381808 5.49e-01 80 chrX:7181731-7181811 6.11e-01 80 chrX:993214-993294 2.04e-01 80 chrI:6608031-6608111 8.53e-02 80 chrX:7501140-7501220 4.00e-01 80 chrV:13028971-13029051 5.15e-01 80 chrX:13514593-13514673 5.23e-02 70_[+5(2.47e-05)]_2 chrIII:11054954-11055034 8.40e-02 6_[+2(8.47e-05)]_66 chrX:14841130-14841210 1.75e-02 54_[+1(1.62e-05)]_18 chrV:12465567-12465647 1.12e-02 80 chrX:14744587-14744667 5.02e-03 [+2(1.43e-05)]_[+2(5.61e-05)]_64 chrIV:14327026-14327106 1.07e-01 80 chrX:11467376-11467456 2.66e-01 65_[+2(6.98e-05)]_7 chrIV:2048990-2049070 1.55e-01 80 chrV:10858542-10858622 9.77e-02 80 chrIV:15021228-15021308 7.01e-01 80 chrX:5812155-5812235 2.20e-01 80 chrX:6286269-6286349 2.39e-01 80 chrX:15736631-15736711 9.18e-01 80 chrIII:7724427-7724507 5.45e-01 80 chrIV:16492469-16492549 6.80e-02 45_[+1(3.16e-05)]_[+1(3.16e-05)]_4_\ [+1(3.16e-05)]_7 chrX:7651417-7651497 8.92e-02 80 chrX:11207105-11207185 2.95e-03 41_[+3(2.83e-05)]_14_[+2(1.43e-05)]_\ 9 chrIV:14034299-14034379 7.89e-01 80 chrI:7079316-7079396 3.21e-01 80 chrII:8796598-8796678 4.23e-01 80 chrX:8368276-8368356 3.25e-03 36_[+3(2.83e-05)]_36 chrX:10146743-10146823 1.97e-02 30_[+3(8.39e-05)]_42 chrII:156048-156128 2.51e-02 24_[+4(1.29e-05)]_48 chrX:2364892-2364972 9.98e-01 80 chrV:6100791-6100871 1.26e-01 80 chrI:13756511-13756591 2.87e-06 23_[+1(6.06e-05)]_10_[+3(1.39e-05)]_\ 22_[+5(1.18e-05)]_1 chrIII:4223765-4223845 1.86e-01 80 chrI:3822762-3822842 3.93e-01 9_[+2(8.47e-05)]_63 chrX:11603409-11603489 9.77e-01 80 chrX:7951749-7951829 5.49e-01 80 chrIII:9868269-9868349 7.64e-05 18_[+4(1.29e-05)]_4_[+5(2.47e-05)]_\ 42 chrIV:10342222-10342302 1.05e-01 80 chrX:15353977-15354057 6.43e-02 80 chrIV:9511443-9511523 4.00e-01 80 chrX:7334472-7334552 2.95e-02 6_[+1(9.48e-05)]_66 chrII:24645-24725 9.42e-01 80 chrIII:8904258-8904338 5.14e-01 80 chrV:11764491-11764571 3.03e-01 80 chrX:5244239-5244319 6.42e-02 23_[+3(2.83e-05)]_49 chrII:14405219-14405299 1.54e-01 80 chrI:12995726-12995806 2.46e-02 50_[+3(1.39e-05)]_22 chrX:5729219-5729299 2.26e-02 53_[+1(3.16e-05)]_19 chrV:9789977-9790057 6.57e-03 26_[+5(1.18e-05)]_46 chrI:5379797-5379877 6.22e-02 80 chrIV:1070550-1070630 8.77e-03 16_[+4(3.99e-05)]_56 chrI:8816527-8816607 3.67e-02 58_[+5(2.47e-05)]_14 chrIV:6919501-6919581 2.01e-02 47_[+2(1.43e-05)]_25 chrV:10965652-10965732 6.66e-01 80 chrIV:15471588-15471668 1.47e-01 80 chrV:10040063-10040143 4.36e-01 80 chrV:10871543-10871623 3.26e-02 14_[+3(7.07e-05)]_58 chrII:5057500-5057580 5.46e-01 80 chrIV:11961847-11961927 2.57e-01 80 chrII:5337008-5337088 4.05e-02 12_[+1(3.16e-05)]_60 chrII:6926564-6926644 7.73e-01 80 chrI:397899-397979 7.50e-01 80 chrII:10868937-10869017 1.43e-02 57_[+1(1.62e-05)]_15 chrV:11980329-11980409 7.33e-01 80 chrIII:10844993-10845073 7.96e-05 5_[+4(1.29e-05)]_26_[+5(1.18e-05)]_\ 33 chrIV:8795167-8795247 1.83e-01 80 chrII:9061916-9061996 2.31e-01 80 chrIV:6321860-6321940 2.97e-02 80 chrV:15766351-15766431 2.11e-05 3_[+1(4.64e-05)]_23_[+3(1.39e-05)]_\ 12_[+3(1.39e-05)]_18 chrX:12889860-12889940 3.58e-01 80 chrX:12393975-12394055 6.13e-03 56_[+5(1.18e-05)]_16 chrIII:9668062-9668142 1.80e-03 68_[+2(1.43e-05)]_4 chrII:11980319-11980399 1.43e-01 80 chrI:10769865-10769945 1.75e-02 1_[+1(3.16e-05)]_71 chrX:13144435-13144515 4.44e-01 80 chrV:6227601-6227681 1.52e-03 68_[+4(1.29e-05)]_4 chrV:6224693-6224773 3.14e-02 12_[+1(3.16e-05)]_1_[+1(7.81e-05)]_\ 25_[+1(9.48e-05)]_18 chrII:14040520-14040600 4.00e-01 80 chrII:5661165-5661245 2.32e-01 80 chrV:11521601-11521681 6.88e-02 27_[+3(2.83e-05)]_45 chrII:3077074-3077154 1.18e-01 80 chrV:8802-8882 5.27e-01 80 chrIV:7845661-7845741 5.24e-01 80 chrIII:10407465-10407545 3.60e-02 44_[+2(5.61e-05)]_28 chrIII:2597203-2597283 8.62e-03 18_[+1(3.16e-05)]_54 chrX:727850-727930 2.73e-01 80 chrI:16949-17029 5.42e-04 56_[+2(1.43e-05)]_16 chrIV:16399240-16399320 7.31e-01 80 chrV:14055173-14055253 7.74e-02 80 chrV:20778337-20778417 1.19e-01 7_[+2(1.43e-05)]_65 chrIV:13887612-13887692 6.21e-02 80 chrIII:1923635-1923715 1.80e-01 80 chrII:11620173-11620253 2.99e-02 80 chrII:13335465-13335545 3.44e-01 80 chrX:13264774-13264854 1.82e-01 80 chrI:11374399-11374479 2.13e-03 32_[+4(2.63e-05)]_6_[+3(4.06e-05)]_\ 26 chrIV:2219544-2219624 1.68e-02 16_[+1(6.06e-05)]_56 chrX:6742243-6742323 2.08e-01 80 chrX:1345013-1345093 9.61e-01 80 chrIV:4727980-4728060 4.28e-01 80 chrX:12363116-12363196 6.71e-01 80 chrIII:1926599-1926679 1.41e-01 80 chrX:16446026-16446106 4.13e-01 80 chrIV:11082970-11083050 5.19e-01 80 chrII:8028332-8028412 6.27e-01 80 chrX:1446870-1446950 1.37e-02 80 chrI:9619947-9620027 4.05e-01 80 chrX:15181629-15181709 2.47e-02 80 chrIV:8428755-8428835 1.19e-01 80 chrII:14795108-14795188 9.35e-01 80 chrIII:6464428-6464508 7.31e-01 80 chrII:6913393-6913473 2.61e-01 80 chrIII:13466363-13466443 3.70e-03 40_[+3(1.39e-05)]_32 chrX:6371357-6371437 2.38e-02 80 chrIII:10334148-10334228 2.40e-02 9_[+3(1.39e-05)]_63 chrIII:4237786-4237866 4.11e-01 80 chrI:9163484-9163564 7.71e-02 61_[+3(7.07e-05)]_11 chrV:12343663-12343743 3.01e-01 80 chrIII:7155832-7155912 7.52e-02 28_[+1(7.81e-05)]_44 chrIII:7520791-7520871 4.67e-02 21_[+4(1.29e-05)]_51 chrII:10502859-10502939 1.19e-03 45_[+2(1.43e-05)]_27 chrX:5165201-5165281 7.53e-02 80 chrIV:6323823-6323903 2.84e-04 11_[+4(1.29e-05)]_40_[+3(2.83e-05)]_\ 13 chrX:16056599-16056679 1.32e-01 56_[+4(5.39e-05)]_16 chrII:8185180-8185260 3.77e-01 80 chrI:4789913-4789993 9.31e-03 49_[+1(6.06e-05)]_23 chrI:9669242-9669322 1.52e-03 21_[+3(4.06e-05)]_51 chrI:1068275-1068355 8.06e-01 80 chrIV:6097259-6097339 3.13e-02 80 chrX:16604740-16604820 5.64e-02 80 chrI:1873872-1873952 7.69e-01 80 chrIII:11946492-11946572 1.97e-01 80 chrX:14753656-14753736 5.02e-01 80 chrV:6267567-6267647 3.11e-01 80 chrV:9547001-9547081 1.35e-02 45_[+3(1.39e-05)]_27 chrII:14059927-14060007 7.77e-02 80 chrX:2242967-2243047 5.85e-02 80 chrIV:4049666-4049746 9.51e-02 19_[+5(1.18e-05)]_53 chrI:13663349-13663429 9.14e-01 80 chrX:3697752-3697832 3.48e-02 80 chrI:12039922-12040002 5.12e-05 42_[+1(3.16e-05)]_18_[+2(1.43e-05)]_\ 4 chrX:593486-593566 2.58e-02 80 chrX:13145307-13145387 8.23e-01 80 chrIII:8417538-8417618 7.31e-01 80 chrX:8386329-8386409 7.63e-01 80 chrIII:8447105-8447185 2.76e-01 80 chrX:949737-949817 4.35e-01 80 chrX:14708407-14708487 3.70e-02 66_[+1(3.16e-05)]_6 chrX:11031337-11031417 3.43e-02 80 chrV:53452-53532 1.09e-01 33_[+4(2.63e-05)]_39 chrX:17479991-17480071 2.55e-01 80 chrIV:17249835-17249915 3.53e-02 58_[+5(1.18e-05)]_14 chrIII:10848985-10849065 4.54e-05 6_[+4(1.29e-05)]_27_[+5(3.81e-05)]_\ 31 chrIII:1925312-1925392 8.03e-01 80 chrX:2549451-2549531 3.95e-01 80 chrIII:8795817-8795897 4.91e-02 80 chrI:9854049-9854129 5.08e-01 80 chrIII:4899870-4899950 4.55e-02 80 chrX:16961568-16961648 6.11e-03 80 chrII:4851765-4851845 8.21e-03 55_[+3(1.39e-05)]_17 chrII:15025935-15026015 1.66e-01 80 chrX:5841251-5841331 2.41e-01 80 chrIV:1094311-1094391 1.67e-02 8_[+3(1.39e-05)]_64 chrIII:5679085-5679165 6.03e-02 80 chrIV:6336771-6336851 4.75e-01 80 chrV:14685719-14685799 1.85e-01 80 chrIII:3801469-3801549 2.15e-01 80 chrI:1958498-1958578 9.58e-02 19_[+1(4.64e-05)]_53 chrI:461714-461794 1.24e-02 80 chrX:6743970-6744050 8.36e-02 80 chrIII:12612630-12612710 2.11e-02 35_[+2(1.43e-05)]_37 chrX:353290-353370 3.92e-01 80 chrX:5429508-5429588 1.95e-01 80 chrX:15841215-15841295 3.77e-01 80 chrI:8426910-8426990 3.58e-02 19_[+2(1.43e-05)]_53 chrX:10766277-10766357 7.94e-02 80 chrI:11930102-11930182 2.79e-02 28_[+5(3.81e-05)]_44 chrX:16682073-16682153 9.56e-01 80 chrX:7823217-7823297 8.47e-02 39_[+1(3.16e-05)]_33 chrX:12106174-12106254 5.82e-01 80 chrI:5316485-5316565 6.42e-01 80 chrV:12291766-12291846 5.25e-03 9_[+5(3.81e-05)]_23_[+3(7.07e-05)]_\ 32 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************