******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-31.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:14617931-14618011 1.0000 80 chrX:3040717-3040797 1.0000 80 chrI:819593-819673 1.0000 80 chrIII:8218145-8218225 1.0000 80 chrIII:13131432-13131512 1.0000 80 chrII:4575455-4575535 1.0000 80 chrI:4914962-4915042 1.0000 80 chrX:8006137-8006217 1.0000 80 chrII:14346412-14346492 1.0000 80 chrX:12686566-12686646 1.0000 80 chrX:3078609-3078689 1.0000 80 chrX:852877-852957 1.0000 80 chrII:9313455-9313535 1.0000 80 chrII:9574564-9574644 1.0000 80 chrX:15155221-15155301 1.0000 80 chrV:9395295-9395375 1.0000 80 chrI:8718296-8718376 1.0000 80 chrIII:12877978-12878058 1.0000 80 chrX:9804859-9804939 1.0000 80 chrIV:13533233-13533313 1.0000 80 chrI:367348-367428 1.0000 80 chrI:5722361-5722441 1.0000 80 chrX:16991582-16991662 1.0000 80 chrII:8589402-8589482 1.0000 80 chrI:5175698-5175778 1.0000 80 chrI:12773403-12773483 1.0000 80 chrIV:1447125-1447205 1.0000 80 chrIV:12816769-12816849 1.0000 80 chrIII:4452879-4452959 1.0000 80 chrX:16826622-16826702 1.0000 80 chrIII:4451092-4451172 1.0000 80 chrI:7515981-7516061 1.0000 80 chrIV:5860925-5861005 1.0000 80 chrV:12211209-12211289 1.0000 80 chrV:12421521-12421601 1.0000 80 chrX:16376139-16376219 1.0000 80 chrIV:1213345-1213425 1.0000 80 chrIV:4401762-4401842 1.0000 80 chrX:1005167-1005247 1.0000 80 chrI:4976275-4976355 1.0000 80 chrV:9769574-9769654 1.0000 80 chrIII:7708992-7709072 1.0000 80 chrII:10247699-10247779 1.0000 80 chrX:8426346-8426426 1.0000 80 chrIII:6013172-6013252 1.0000 80 chrX:5205709-5205789 1.0000 80 chrIV:8070996-8071076 1.0000 80 chrIII:9451100-9451180 1.0000 80 chrII:10373690-10373770 1.0000 80 chrV:11213557-11213637 1.0000 80 chrIV:12653242-12653322 1.0000 80 chrI:14146274-14146354 1.0000 80 chrIV:9523296-9523376 1.0000 80 chrI:2871436-2871516 1.0000 80 chrIV:4702248-4702328 1.0000 80 chrI:8783820-8783900 1.0000 80 chrI:1989382-1989462 1.0000 80 chrV:4967427-4967507 1.0000 80 chrIV:13487160-13487240 1.0000 80 chrI:1096195-1096275 1.0000 80 chrIII:3424061-3424141 1.0000 80 chrV:3218765-3218845 1.0000 80 chrIII:8417023-8417103 1.0000 80 chrII:7894818-7894898 1.0000 80 chrX:11367824-11367904 1.0000 80 chrX:13944337-13944417 1.0000 80 chrI:13418745-13418825 1.0000 80 chrX:8311742-8311822 1.0000 80 chrIII:8216399-8216479 1.0000 80 chrX:14243712-14243792 1.0000 80 chrIV:1908606-1908686 1.0000 80 chrX:737159-737239 1.0000 80 chrI:4961767-4961847 1.0000 80 chrIV:10867849-10867929 1.0000 80 chrII:6411929-6412009 1.0000 80 chrII:6941680-6941760 1.0000 80 chrV:20839657-20839737 1.0000 80 chrII:7895049-7895129 1.0000 80 chrV:14443781-14443861 1.0000 80 chrV:966290-966370 1.0000 80 chrX:10598915-10598995 1.0000 80 chrIV:4401962-4402042 1.0000 80 chrIV:628209-628289 1.0000 80 chrI:1213505-1213585 1.0000 80 chrX:10509053-10509133 1.0000 80 chrX:2707760-2707840 1.0000 80 chrV:5846853-5846933 1.0000 80 chrIV:4505121-4505201 1.0000 80 chrX:6953525-6953605 1.0000 80 chrX:7463811-7463891 1.0000 80 chrI:2709717-2709797 1.0000 80 chrIII:8221209-8221289 1.0000 80 chrX:9089709-9089789 1.0000 80 chrX:2049003-2049083 1.0000 80 chrIII:3543223-3543303 1.0000 80 chrX:9510045-9510125 1.0000 80 chrX:7460661-7460741 1.0000 80 chrV:20653485-20653565 1.0000 80 chrV:13024654-13024734 1.0000 80 chrIII:8283060-8283140 1.0000 80 chrIII:13474668-13474748 1.0000 80 chrI:9435230-9435310 1.0000 80 chrII:6940041-6940121 1.0000 80 chrIII:11093620-11093700 1.0000 80 chrIII:11848461-11848541 1.0000 80 chrI:1675910-1675990 1.0000 80 chrV:12897498-12897578 1.0000 80 chrX:9814593-9814673 1.0000 80 chrIII:8503436-8503516 1.0000 80 chrX:11475855-11475935 1.0000 80 chrI:5724601-5724681 1.0000 80 chrX:4576369-4576449 1.0000 80 chrIII:6367862-6367942 1.0000 80 chrIV:13013418-13013498 1.0000 80 chrIII:3136786-3136866 1.0000 80 chrIV:7948505-7948585 1.0000 80 chrIII:8512437-8512517 1.0000 80 chrX:2108386-2108466 1.0000 80 chrIII:9879224-9879304 1.0000 80 chrIV:4404014-4404094 1.0000 80 chrX:2455024-2455104 1.0000 80 chrX:12180797-12180877 1.0000 80 chrI:1280166-1280246 1.0000 80 chrII:8223611-8223691 1.0000 80 chrI:2100028-2100108 1.0000 80 chrIV:4570723-4570803 1.0000 80 chrI:1315570-1315650 1.0000 80 chrIV:7620538-7620618 1.0000 80 chrV:13401586-13401666 1.0000 80 chrX:5802824-5802904 1.0000 80 chrX:12407404-12407484 1.0000 80 chrV:4359253-4359333 1.0000 80 chrX:15725744-15725824 1.0000 80 chrV:4552885-4552965 1.0000 80 chrV:20464896-20464976 1.0000 80 chrX:10597714-10597794 1.0000 80 chrII:5860756-5860836 1.0000 80 chrIII:3789892-3789972 1.0000 80 chrX:14486669-14486749 1.0000 80 chrX:952675-952755 1.0000 80 chrX:15347876-15347956 1.0000 80 chrIV:17108342-17108422 1.0000 80 chrI:8119341-8119421 1.0000 80 chrIV:15259648-15259728 1.0000 80 chrII:5965804-5965884 1.0000 80 chrIV:14299094-14299174 1.0000 80 chrIV:17099277-17099357 1.0000 80 chrII:15008630-15008710 1.0000 80 chrI:12899126-12899206 1.0000 80 chrX:12532599-12532679 1.0000 80 chrII:5702754-5702834 1.0000 80 chrI:6284728-6284808 1.0000 80 chrIII:3220492-3220572 1.0000 80 chrX:14329487-14329567 1.0000 80 chrII:6828398-6828478 1.0000 80 chrII:6409398-6409478 1.0000 80 chrIV:16401293-16401373 1.0000 80 chrV:11529432-11529512 1.0000 80 chrIV:8515546-8515626 1.0000 80 chrX:3049413-3049493 1.0000 80 chrIV:5755057-5755137 1.0000 80 chrI:3906363-3906443 1.0000 80 chrII:12604484-12604564 1.0000 80 chrV:9664777-9664857 1.0000 80 chrII:10370914-10370994 1.0000 80 chrII:4584509-4584589 1.0000 80 chrII:8951235-8951315 1.0000 80 chrV:5755066-5755146 1.0000 80 chrV:9247574-9247654 1.0000 80 chrI:6958800-6958880 1.0000 80 chrII:10755632-10755712 1.0000 80 chrI:2710638-2710718 1.0000 80 chrX:14127440-14127520 1.0000 80 chrIII:4612817-4612897 1.0000 80 chrIV:16049000-16049080 1.0000 80 chrIV:12684486-12684566 1.0000 80 chrIV:3351517-3351597 1.0000 80 chrX:6813047-6813127 1.0000 80 chrI:2571232-2571312 1.0000 80 chrII:1500575-1500655 1.0000 80 chrII:8587955-8588035 1.0000 80 chrII:10990734-10990814 1.0000 80 chrX:2926079-2926159 1.0000 80 chrI:6341880-6341960 1.0000 80 chrX:12086463-12086543 1.0000 80 chrII:9982639-9982719 1.0000 80 chrV:4193270-4193350 1.0000 80 chrI:636781-636861 1.0000 80 chrIV:6294177-6294257 1.0000 80 chrIV:6887861-6887941 1.0000 80 chrX:5519651-5519731 1.0000 80 chrIII:4208406-4208486 1.0000 80 chrII:11567395-11567475 1.0000 80 chrV:9225788-9225868 1.0000 80 chrV:14695488-14695568 1.0000 80 chrIV:13289517-13289597 1.0000 80 chrIV:12584309-12584389 1.0000 80 chrX:7654131-7654211 1.0000 80 chrIII:3311271-3311351 1.0000 80 chrII:11025724-11025804 1.0000 80 chrI:14073013-14073093 1.0000 80 chrI:275779-275859 1.0000 80 chrIII:4515339-4515419 1.0000 80 chrV:16746739-16746819 1.0000 80 chrI:11222149-11222229 1.0000 80 chrX:15555467-15555547 1.0000 80 chrX:6807570-6807650 1.0000 80 chrV:9270568-9270648 1.0000 80 chrI:4958852-4958932 1.0000 80 chrIV:5970635-5970715 1.0000 80 chrII:147637-147717 1.0000 80 chrV:6485285-6485365 1.0000 80 chrV:18589696-18589776 1.0000 80 chrI:2697154-2697234 1.0000 80 chrI:3338408-3338488 1.0000 80 chrI:9940982-9941062 1.0000 80 chrII:13294750-13294830 1.0000 80 chrII:12374188-12374268 1.0000 80 chrII:3975139-3975219 1.0000 80 chrI:7224687-7224767 1.0000 80 chrX:9213674-9213754 1.0000 80 chrIV:9777702-9777782 1.0000 80 chrIV:175735-175815 1.0000 80 chrX:12091755-12091835 1.0000 80 chrX:6893122-6893202 1.0000 80 chrX:5129593-5129673 1.0000 80 chrII:2992506-2992586 1.0000 80 chrI:9516118-9516198 1.0000 80 chrV:15771113-15771193 1.0000 80 chrV:8797091-8797171 1.0000 80 chrIII:8461446-8461526 1.0000 80 chrIV:4586154-4586234 1.0000 80 chrII:10369868-10369948 1.0000 80 chrX:10505309-10505389 1.0000 80 chrI:4312750-4312830 1.0000 80 chrI:470972-471052 1.0000 80 chrIV:7611586-7611666 1.0000 80 chrX:12184590-12184670 1.0000 80 chrIII:8211670-8211750 1.0000 80 chrV:156215-156295 1.0000 80 chrV:15634-15714 1.0000 80 chrV:4357551-4357631 1.0000 80 chrIII:8829405-8829485 1.0000 80 chrX:2216794-2216874 1.0000 80 chrV:12649774-12649854 1.0000 80 chrI:5118925-5119005 1.0000 80 chrX:7457359-7457439 1.0000 80 chrV:14899777-14899857 1.0000 80 chrX:7456004-7456084 1.0000 80 chrX:3351636-3351716 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ceh-31/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-31.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.27 C 0.23 G 0.237 T 0.264 Background letter frequencies (from file dataset with add-one prior applied): A 0.27 C 0.23 G 0.237 T 0.264 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TCTYTCTC MEME-1 width = 8 sites = 50 llr = 400 E-value = 4.5e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTYTCTC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2::::::: pos.-specific C :8:627:a probability G :::::::: matrix T 82a483a: bits 2.1 * 1.9 * ** 1.7 * ** 1.5 * ** Relative 1.3 ** *** Entropy 1.1 *** **** (11.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTCTCTC consensus AT TCT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYTCTC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:4515339-4515419 2 1.36e-05 C TCTCTCTC TTCCTATACC chrI:275779-275859 47 1.36e-05 GACCCCTGTC TCTCTCTC TTTGTATTGG chrIV:6887861-6887941 68 1.36e-05 ACGCGCAACT TCTCTCTC TACGT chrX:14127440-14127520 21 1.36e-05 CCGCTGCTAT TCTCTCTC TGCCCTCTCC chrIII:8503436-8503516 61 1.36e-05 tctctgcttc tctctctc tgcttctctc chrV:3218765-3218845 33 1.36e-05 GCGTGGGGTC TCTCTCTC TGTTCTTCGC chrX:8006137-8006217 43 1.36e-05 TTATTCTTCC TCTCTCTC TTCGCTAATT chrV:14899777-14899857 14 2.92e-05 ACTAACTGTT TCTTTCTC TTTTGAGCAT chrIV:3351517-3351597 20 2.92e-05 GTCTCCATTG TCTTTCTC AAACTCTCTT chrIV:17099277-17099357 49 2.92e-05 CTTCCAGTTC TCTTTCTC GCGATTCTCT chrIV:4404014-4404094 48 2.92e-05 CTCTCTTGCC TCTTTCTC TCACTCATTG chrI:4914962-4915042 15 2.92e-05 ACGTCACATC TCTTTCTC TTGAAAAGAG chrI:819593-819673 10 2.92e-05 TTTTCCCCC TCTTTCTC TCTAATACTC chrI:9435230-9435310 59 4.48e-05 CCTTCCTCAC TCTCTTTC CGTCCGTTTG chrI:3338408-3338488 29 7.05e-05 ACTTTCCTGC ACTCTCTC GTTCCACCGC chrV:18589696-18589776 45 7.05e-05 CCACCTCCCT ACTCTCTC TACTTGGTAC chrIII:3220492-3220572 29 7.05e-05 CTCACCACAC ACTCTCTC GCCGCTTCTA chrX:15725744-15725824 63 7.05e-05 CACGCTCTCT ACTCTCTC GTTCCCGCAT chrIII:8512437-8512517 64 7.05e-05 AAGGTAACAT ACTCTCTC TGCCCCTCC chrX:11475855-11475935 61 7.05e-05 CGCAACCACT TCTCCCTC ATAGCTCACC chrX:9089709-9089789 68 7.05e-05 GTGGATTTTC ACTCTCTC GCTTG chrI:4976275-4976355 4 7.05e-05 TCT ACTCTCTC GCCAACCCTG chrI:12773403-12773483 70 7.05e-05 ACTCTTGTAC ACTCTCTC GTA chrI:5722361-5722441 71 7.05e-05 ATTCACTAAC ACTCTCTC AC chrX:12184590-12184670 55 8.61e-05 GCAACACGAC TTTCTCTC ATTTTCTTTT chrIV:13533233-13533313 71 8.61e-05 GCGTCTCCCG TTTCTCTC AT chrX:9814593-9814673 4 1.04e-04 CCG TCTTTTTC CTTATCCTTG chrX:737159-737239 67 1.04e-04 TTTCTCGTCT TCTTTTTC CCATTT chrI:4312750-4312830 60 1.34e-04 CTTGTTGTCC TCTTCCTC TTTCCGTCTT chrI:1280166-1280246 50 1.52e-04 TTTTAGCCGT TTTTTCTC GTTTTCAAAA chrIV:628209-628289 35 1.52e-04 CAAAACGCAA TTTTTCTC ACGCAACGCA chrII:7894818-7894898 45 1.52e-04 CAAAACGCAA TTTTTCTC ACGCAACGCA chrIV:4401762-4401842 23 1.52e-04 CAAAACGCAA TTTTTCTC ACGCAACGCA chrIV:15259648-15259728 54 1.81e-04 TCTCCTCGTG TCTCCTTC CCTTTCCGCC chrIV:17108342-17108422 59 1.81e-04 TGCCGTCAGA TCTCCTTC TCGCAGATCC chrIII:3543223-3543303 42 1.81e-04 TTGAAAGAGG ACTCTTTC AAATGGAGGG chrI:1213505-1213585 9 1.81e-04 TCCGTAGA TCTCCTTC TCGTAGATCC chrX:2926079-2926159 20 2.11e-04 AGCTCTCGGC TTTCTTTC GTTCTTAAAT chrX:11367824-11367904 59 2.11e-04 TCTCATTCTG TTTCTTTC CGCCTCTTCT chrV:966290-966370 1 2.41e-04 . TTTCCCTC CGACTATTCC chrI:2697154-2697234 47 2.75e-04 AAGCACATTG TCTTCTTC TAAGACATAT chrII:9982639-9982719 66 2.75e-04 GAGTGcttct tcttcttc ttctttt chrIV:9523296-9523376 71 2.75e-04 TCGGGGAATC tcttcttc tt chrV:14617931-14618011 39 2.75e-04 ACCATCTTCT ACTTTTTC TGAATCCCCC chrIII:6367862-6367942 57 3.23e-04 GTCCACGCGT TCTCACTC TTGTTTGCCT chrX:3078609-3078689 71 3.23e-04 TTGCAGCTCT TTTTTTTC TT chrIII:8218145-8218225 25 3.23e-04 TTCATACGTG TCTCACTC TCTATTCCAC chrV:20653485-20653565 61 3.57e-04 GTGTCTTCAC ATTTTCTC TTCTCCCGTT chrX:9510045-9510125 38 3.57e-04 CAATTTCTTG TTTTCCTC TTCTACCGCT chrI:1315570-1315650 62 3.71e-04 AATACATATA tctgtctc tctgctactt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYTCTC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:4515339-4515419 1.4e-05 1_[+1]_71 chrI:275779-275859 1.4e-05 46_[+1]_26 chrIV:6887861-6887941 1.4e-05 67_[+1]_5 chrX:14127440-14127520 1.4e-05 20_[+1]_52 chrIII:8503436-8503516 1.4e-05 60_[+1]_12 chrV:3218765-3218845 1.4e-05 32_[+1]_40 chrX:8006137-8006217 1.4e-05 42_[+1]_30 chrV:14899777-14899857 2.9e-05 13_[+1]_59 chrIV:3351517-3351597 2.9e-05 19_[+1]_53 chrIV:17099277-17099357 2.9e-05 48_[+1]_24 chrIV:4404014-4404094 2.9e-05 47_[+1]_25 chrI:4914962-4915042 2.9e-05 14_[+1]_58 chrI:819593-819673 2.9e-05 9_[+1]_63 chrI:9435230-9435310 4.5e-05 58_[+1]_14 chrI:3338408-3338488 7.1e-05 28_[+1]_44 chrV:18589696-18589776 7.1e-05 44_[+1]_28 chrIII:3220492-3220572 7.1e-05 28_[+1]_44 chrX:15725744-15725824 7.1e-05 62_[+1]_10 chrIII:8512437-8512517 7.1e-05 63_[+1]_9 chrX:11475855-11475935 7.1e-05 60_[+1]_12 chrX:9089709-9089789 7.1e-05 67_[+1]_5 chrI:4976275-4976355 7.1e-05 3_[+1]_69 chrI:12773403-12773483 7.1e-05 69_[+1]_3 chrI:5722361-5722441 7.1e-05 70_[+1]_2 chrX:12184590-12184670 8.6e-05 54_[+1]_18 chrIV:13533233-13533313 8.6e-05 70_[+1]_2 chrX:9814593-9814673 0.0001 3_[+1]_69 chrX:737159-737239 0.0001 66_[+1]_6 chrI:4312750-4312830 0.00013 59_[+1]_13 chrI:1280166-1280246 0.00015 49_[+1]_23 chrIV:628209-628289 0.00015 34_[+1]_38 chrII:7894818-7894898 0.00015 44_[+1]_28 chrIV:4401762-4401842 0.00015 22_[+1]_50 chrIV:15259648-15259728 0.00018 53_[+1]_19 chrIV:17108342-17108422 0.00018 58_[+1]_14 chrIII:3543223-3543303 0.00018 41_[+1]_31 chrI:1213505-1213585 0.00018 8_[+1]_64 chrX:2926079-2926159 0.00021 19_[+1]_53 chrX:11367824-11367904 0.00021 58_[+1]_14 chrV:966290-966370 0.00024 [+1]_72 chrI:2697154-2697234 0.00027 46_[+1]_26 chrII:9982639-9982719 0.00027 65_[+1]_7 chrIV:9523296-9523376 0.00027 70_[+1]_2 chrV:14617931-14618011 0.00027 38_[+1]_34 chrIII:6367862-6367942 0.00032 56_[+1]_16 chrX:3078609-3078689 0.00032 70_[+1]_2 chrIII:8218145-8218225 0.00032 24_[+1]_48 chrV:20653485-20653565 0.00036 60_[+1]_12 chrX:9510045-9510125 0.00036 37_[+1]_35 chrI:1315570-1315650 0.00037 61_[+1]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYTCTC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTYTCTC width=8 seqs=50 chrIII:4515339-4515419 ( 2) TCTCTCTC 1 chrI:275779-275859 ( 47) TCTCTCTC 1 chrIV:6887861-6887941 ( 68) TCTCTCTC 1 chrX:14127440-14127520 ( 21) TCTCTCTC 1 chrIII:8503436-8503516 ( 61) TCTCTCTC 1 chrV:3218765-3218845 ( 33) TCTCTCTC 1 chrX:8006137-8006217 ( 43) TCTCTCTC 1 chrV:14899777-14899857 ( 14) TCTTTCTC 1 chrIV:3351517-3351597 ( 20) TCTTTCTC 1 chrIV:17099277-17099357 ( 49) TCTTTCTC 1 chrIV:4404014-4404094 ( 48) TCTTTCTC 1 chrI:4914962-4915042 ( 15) TCTTTCTC 1 chrI:819593-819673 ( 10) TCTTTCTC 1 chrI:9435230-9435310 ( 59) TCTCTTTC 1 chrI:3338408-3338488 ( 29) ACTCTCTC 1 chrV:18589696-18589776 ( 45) ACTCTCTC 1 chrIII:3220492-3220572 ( 29) ACTCTCTC 1 chrX:15725744-15725824 ( 63) ACTCTCTC 1 chrIII:8512437-8512517 ( 64) ACTCTCTC 1 chrX:11475855-11475935 ( 61) TCTCCCTC 1 chrX:9089709-9089789 ( 68) ACTCTCTC 1 chrI:4976275-4976355 ( 4) ACTCTCTC 1 chrI:12773403-12773483 ( 70) ACTCTCTC 1 chrI:5722361-5722441 ( 71) ACTCTCTC 1 chrX:12184590-12184670 ( 55) TTTCTCTC 1 chrIV:13533233-13533313 ( 71) TTTCTCTC 1 chrX:9814593-9814673 ( 4) TCTTTTTC 1 chrX:737159-737239 ( 67) TCTTTTTC 1 chrI:4312750-4312830 ( 60) TCTTCCTC 1 chrI:1280166-1280246 ( 50) TTTTTCTC 1 chrIV:628209-628289 ( 35) TTTTTCTC 1 chrII:7894818-7894898 ( 45) TTTTTCTC 1 chrIV:4401762-4401842 ( 23) TTTTTCTC 1 chrIV:15259648-15259728 ( 54) TCTCCTTC 1 chrIV:17108342-17108422 ( 59) TCTCCTTC 1 chrIII:3543223-3543303 ( 42) ACTCTTTC 1 chrI:1213505-1213585 ( 9) TCTCCTTC 1 chrX:2926079-2926159 ( 20) TTTCTTTC 1 chrX:11367824-11367904 ( 59) TTTCTTTC 1 chrV:966290-966370 ( 1) TTTCCCTC 1 chrI:2697154-2697234 ( 47) TCTTCTTC 1 chrII:9982639-9982719 ( 66) TCTTCTTC 1 chrIV:9523296-9523376 ( 71) TCTTCTTC 1 chrV:14617931-14618011 ( 39) ACTTTTTC 1 chrIII:6367862-6367942 ( 57) TCTCACTC 1 chrX:3078609-3078689 ( 71) TTTTTTTC 1 chrIII:8218145-8218225 ( 25) TCTCACTC 1 chrV:20653485-20653565 ( 61) ATTTTCTC 1 chrX:9510045-9510125 ( 38) TTTTCCTC 1 chrI:1315570-1315650 ( 62) TCTGTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYTCTC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1187 E= 4.5e-009 -17 -1229 -1229 153 -1229 173 -1229 -14 -1229 -1229 -1229 192 -1229 134 -356 60 -275 -20 -1229 153 -1229 165 -1229 9 -1229 -1229 -1229 192 -1229 212 -1229 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYTCTC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 4.5e-009 0.240000 0.000000 0.000000 0.760000 0.000000 0.760000 0.000000 0.240000 0.000000 0.000000 0.000000 1.000000 0.000000 0.580000 0.020000 0.400000 0.040000 0.200000 0.000000 0.760000 0.000000 0.720000 0.000000 0.280000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTYTCTC MEME-1 regular expression -------------------------------------------------------------------------------- [TA][CT]T[CT][TC][CT]TC -------------------------------------------------------------------------------- Time 7.49 secs. ******************************************************************************** ******************************************************************************** MOTIF GARARRRA MEME-2 width = 8 sites = 107 llr = 690 E-value = 1.2e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GARARRRA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2a495647 pos.-specific C :::::11: probability G 8:615353 matrix T :::::::: bits 2.1 1.9 * 1.7 * 1.5 * * Relative 1.3 ** * Entropy 1.1 ***** * (9.3 bits) 0.8 ****** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGAGAGA consensus A AGAG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARARRRA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:13294750-13294830 27 1.68e-05 GTATTGGAGA GAGAGAGA AGGTCCGAAG chrV:9270568-9270648 60 1.68e-05 CACATAGGAA GAGAGAGA AAAAGGGGAA chrII:10755632-10755712 51 1.68e-05 ATGAGTGAGT GAGAGAGA GGAAAGGAGA chrII:12604484-12604564 15 1.68e-05 GTGTGGAAAT GAGAGAGA GGGAAAAGAA chrX:14486669-14486749 31 1.68e-05 AATGTCGGCG GAGAGAGA AAGGTGCGTT chrIV:4404014-4404094 13 1.68e-05 tagagagaga gagagaga gagtgagtaa chrIII:9879224-9879304 31 1.68e-05 AAAAGAGCTG GAGAGAGA AGGGGAATGA chrV:13024654-13024734 4 1.68e-05 TCT GAGAGAGA CGCAGTAAGT chrX:852877-852957 28 1.68e-05 gagggagacc gagagaga gaAAAGGGAC chrIII:13131432-13131512 55 1.68e-05 GAGAGCGGGA GAGAGAGA AGCAGGTGTG chrX:3040717-3040797 67 1.68e-05 AAGGAGGAGC GAGAGAGA AAAGCC chrI:6958800-6958880 52 3.59e-05 AGTCAATCCG GAGAAAGA GAGGGCGCAA chrX:2707760-2707840 68 3.59e-05 ATAGCTTTTA GAGAAAGA ATAGA chrIV:5860925-5861005 73 3.59e-05 AAGAAAAAGA GAGAAAGA chrI:8119341-8119421 28 6.97e-05 ATGAGGGAAA GAGAGAGG AAGCGGGAAA chrIV:7620538-7620618 65 6.97e-05 CAGAAATGGC GAGAGAAA GCTGCCTG chrV:14695488-14695568 44 1.04e-04 agaaaaagaa gaaagaga agagcaactg chrX:952675-952755 43 1.04e-04 ATAGGAAAGG GAAAGAGA GGGCGCGCAA chrV:15634-15714 46 1.42e-04 CGGGGCAGAC GAGAAAAA AATGAGAGCC chrV:15771113-15771193 57 1.42e-04 CGTTTTCTTC GAGAAAAA TAGCGTTTGG chrX:10597714-10597794 58 1.42e-04 GTCGGGGAGG GAGAAAAA GGTTACCGCA chrV:20839657-20839737 59 1.42e-04 CGTTTTCTTC GAGAAAAA TAGCGTTTGG chrIV:4702248-4702328 57 1.42e-04 TGCGTTGCGT GAGAAAAA TTGCGTTTTG chrII:14346412-14346492 70 1.42e-04 TGCGTTGCGT GAGAAAAA TTG chrV:9664777-9664857 8 1.81e-04 AGTAGAG GAGAAGGA AGACGAGGAC chrV:20464896-20464976 15 1.81e-04 TGACAAGAGT GAAAAAGA CCATTGGAAA chrIII:8283060-8283140 40 1.81e-04 GACCGATTGG GAAAAAGA AGGAAACAGG chrX:16826622-16826702 7 1.81e-04 TTCGAC GAAAAAGA GCAAATCGGG chrI:8718296-8718376 20 1.81e-04 ATGAATAAAT GAAAAAGA GACACCCTGG chrIV:7611586-7611666 49 1.97e-04 TTGAGACGCA GAGAGAAG AGTCGTTGAG chrX:5129593-5129673 51 1.97e-04 TAAGATTCAG GAGAGAAG CAACATTTGT chrX:9213674-9213754 12 1.97e-04 CAGTTTGTTG GAGAGAAG GGGTACTCGA chrIV:8515546-8515626 2 1.97e-04 G GAGAGAAG TGACATACAC chrV:11213557-11213637 30 1.97e-04 AAAAAGGGGT GAGAGAAG GTTGCTTTGG chrX:3351636-3351716 26 2.66e-04 ACTGACCTTA GAGAGGAA GACATACACC chrV:6485285-6485365 6 2.66e-04 AAGGT GAGAGGGG TCGTCCAAGC chrII:5860756-5860836 9 2.66e-04 AATGAGTT GAAAGAAA AAAGGAAGAC chrIII:3543223-3543303 34 2.66e-04 CACATCTCTT GAAAGAGG ACTCTTTCAA chrIII:8221209-8221289 36 2.66e-04 GCATCCGACC GAAAGAAA GCAGGTGACA chrX:16376139-16376219 57 2.66e-04 GAGGGACGAG GAGAGGGG GACACCTCGA chrI:367348-367428 49 2.66e-04 GGAGCAGAAC GAAAGAGG CACCACGGAT chrX:6953525-6953605 34 3.01e-04 GGGAAACAGT GAGAAAAG GAAGAAGAGT chrIV:17108342-17108422 21 3.79e-04 CAGACACCAC GAAAAAGG GGATCTATGA chrV:4552885-4552965 36 3.79e-04 GGAGCAGAAC GAAAAAGG GATCTGCAAA chrIII:13474668-13474748 50 3.79e-04 GAAATTCATG GAAAAAAA GGCGGAGCCT chrV:20653485-20653565 14 3.79e-04 ACAGAAACGG GAGAAGAA AAAACGCTAG chrX:9804859-9804939 4 3.79e-04 ATA GAGAAGAA AGAAGAGGAG chrII:4584509-4584589 40 3.98e-04 CCGAAACGAA GAAAAGGA CAAGTGACCT chrX:15555467-15555547 69 4.34e-04 CGGGaggaag aagagaga gtaa chrIV:16049000-16049080 72 4.34e-04 GTCTCTCTTT AAGAGAGA T chrIII:4612817-4612897 47 4.34e-04 ATGCAAATGT AAGAGAGA CATAGAGAAA chrI:3906363-3906443 12 4.34e-04 AGAGAAATTG AAGAGAGA ATCGATGGGA chrIII:4451092-4451172 22 4.34e-04 AGCGGATGGG GAGAGACA AGACAATTAT chrII:9313455-9313535 43 4.34e-04 GGTGAGTATT GAGAGACA GAGATAGGCA chrV:4357551-4357631 38 4.67e-04 GGACAAGACg gagaggag gaggaggagg chrII:8589402-8589482 28 4.67e-04 ATGAGAAAAT GAAAGAAG AGGAGAAAAT chrII:12374188-12374268 17 5.42e-04 GTAGAGCGTG AAGAAAGA GCAAATGCTA chrIV:4570723-4570803 25 5.42e-04 CATGCTGCTC AAGAAAGA TTTATGTACG chrX:10509053-10509133 53 5.80e-04 GGATGCGATG GAAAAAAG GATGCAGAGA chrI:7515981-7516061 21 5.80e-04 GTCTACTTTC GAGAAGAG CACGGCGGCG chrX:7457359-7457439 19 6.19e-04 TGTGTATGTG GAAAAGAA AACGAGCGAG chrV:8797091-8797171 54 6.19e-04 CAAAGAGCGG GAAAAGGG GATTGGGGAG chrI:9516118-9516198 17 6.19e-04 GAGGCAGTAG GAAAAGAA CAACAAAATT chrI:4958852-4958932 38 6.19e-04 GGGGATCTGC GAAAAGGG GAGATACGAA chrIV:6887861-6887941 3 6.19e-04 CG GAAAAGAA ACAGACAAAC chrV:5755066-5755146 7 6.19e-04 AGCAAC GAAAAGGG GAGCTGGCAC chrI:12899126-12899206 17 6.19e-04 GAGGCCCCAC GAAAAGGG GATCTGCAAA chrV:4359253-4359333 25 6.19e-04 GAGTGCAAAA GAAAAGAA AATGGATACA chrIII:11848461-11848541 65 6.19e-04 CCCCACCACG GAAAAGGG ATCTGCGA chrII:7894818-7894898 4 6.19e-04 AAC GAAAAGGG GAGCTGGCAC chrIV:13487160-13487240 43 6.19e-04 CAAGATCTAC GAAAAGAA GATCTACGAA chrII:10247699-10247779 34 6.19e-04 GTGACTGTTC GAAAAGAA AAACAAAGGT chrIII:12877978-12878058 43 6.19e-04 GAGGCCCCAC GAAAAGGG GAGCAGAACG chrII:5702754-5702834 72 6.71e-04 GCCTTTTCTG AAGAGAAA T chrIV:7948505-7948585 39 6.71e-04 TCACAAAACT GAGAGACG GAGGCTACCG chrV:12421521-12421601 31 6.71e-04 AAAGCTTTCA AAGAGAAA CTTGGTGGCG chrII:6409398-6409478 61 7.43e-04 TTTTTAATGC AAAAGAGA TGGCGTAATT chrX:8311742-8311822 52 7.43e-04 CAAGCAAAAT AAGAGGGA AATGGAATGC chrIII:3311271-3311351 41 8.49e-04 GTGTAGCCGG GAGAGCGA GGCGGTGCCT chrX:7654131-7654211 3 8.49e-04 CA GAGAAACG ACGGCGTTTT chrV:4967427-4967507 2 8.49e-04 A GAAAGGAG GTCCCGAGAC chrX:5205709-5205789 21 8.49e-04 GAGACGGCGA GAGAGCGA GCGGCCGTGG chrV:9769574-9769654 23 8.49e-04 GTGATCGGTG GAGAGCGA AAGCTATAAT chrX:15155221-15155301 9 8.49e-04 AAGACGTT GAGAGCGA AGAAGTTTAG chrV:16746739-16746819 62 9.30e-04 GTGACTTCTC GAAAAACA TGGATTTTTG chrI:636781-636861 10 9.30e-04 tcgaaattc gaaaAACA TGGCCGTGGC chrI:1675910-1675990 48 9.30e-04 GAAAAACCTT GAAAAACA CACATTTTTC chrV:9247574-9247654 46 9.82e-04 GCAGTCATCA GAGAACGA GGGACCATCA chrX:8426346-8426426 62 9.82e-04 ATGCGGCTAG GAGGAAGA CAACAATGGC chrX:10505309-10505389 58 1.11e-03 ACCATCGTGC GAGAGGCG GGGCATTGGA chrX:2108386-2108466 15 1.11e-03 CGTGGCCGCG AAGAGGGG GAATGCTAGG chrIII:3136786-3136866 72 1.11e-03 TTGAAGCAAA AAGAGGAA G chrX:14243712-14243792 39 1.11e-03 AAACGAGTCG GAAAGACG ACGGGAGAGC chrI:4914962-4915042 26 1.11e-03 CTTTCTCTTG AAAAGAGG CTTGTCGCAA chrI:2709717-2709797 31 1.22e-03 GGGAAACGGG GAGGGAAA TGGGTTGTGG chrX:12532599-12532679 45 1.50e-03 ATAAATTATT AAAAAGGA GTCTTCGTTA chrIII:6013172-6013252 62 1.50e-03 CGTTTTCTTC GAGGAAAA TAGCGTTTGG chrIV:4586154-4586234 8 1.57e-03 CTCATTA GAGGAGGA GCTAGGAAGG chrX:14329487-14329567 61 1.57e-03 ACAACCCTAC AAGAGACA GTGTCCCCTT chrIV:13013418-13013498 41 1.57e-03 ATGCGAAAGT GAAAACGA CGCCGCCAGA chrIV:5755057-5755137 19 1.61e-03 GAAACATAAC AAGAGGAG AACGAGGGAC chrIV:16401293-16401373 25 1.71e-03 CCGGTTGCGT AAGAAACA CTCACTACTT chrX:2455024-2455104 21 1.71e-03 TAGCACAAAT AAAAGGAA GAAGCCATCT chrIII:7708992-7709072 42 1.95e-03 AATTGCGAAT GAGGAAAG TGCGCTCTAG chrIV:12653242-12653322 10 2.44e-03 TTCCCGGGT GAAGGGGG TAGGGGGTCT chrIV:8070996-8071076 30 2.49e-03 CTATTGTTCC GAGGAGAG GGCATTGGCG chrII:6411929-6412009 52 2.80e-03 GGCCAAAACC AAGGGGGA CAATTAGCAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARARRRA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:13294750-13294830 1.7e-05 26_[+2]_46 chrV:9270568-9270648 1.7e-05 59_[+2]_13 chrII:10755632-10755712 1.7e-05 50_[+2]_22 chrII:12604484-12604564 1.7e-05 14_[+2]_58 chrX:14486669-14486749 1.7e-05 30_[+2]_42 chrIV:4404014-4404094 1.7e-05 12_[+2]_60 chrIII:9879224-9879304 1.7e-05 30_[+2]_42 chrV:13024654-13024734 1.7e-05 3_[+2]_69 chrX:852877-852957 1.7e-05 27_[+2]_45 chrIII:13131432-13131512 1.7e-05 54_[+2]_18 chrX:3040717-3040797 1.7e-05 66_[+2]_6 chrI:6958800-6958880 3.6e-05 51_[+2]_21 chrX:2707760-2707840 3.6e-05 67_[+2]_5 chrIV:5860925-5861005 3.6e-05 72_[+2] chrI:8119341-8119421 7e-05 27_[+2]_45 chrIV:7620538-7620618 7e-05 64_[+2]_8 chrV:14695488-14695568 0.0001 43_[+2]_29 chrX:952675-952755 0.0001 42_[+2]_30 chrV:15634-15714 0.00014 45_[+2]_27 chrV:15771113-15771193 0.00014 56_[+2]_16 chrX:10597714-10597794 0.00014 57_[+2]_15 chrV:20839657-20839737 0.00014 58_[+2]_14 chrIV:4702248-4702328 0.00014 56_[+2]_16 chrII:14346412-14346492 0.00014 69_[+2]_3 chrV:9664777-9664857 0.00018 7_[+2]_65 chrV:20464896-20464976 0.00018 14_[+2]_58 chrIII:8283060-8283140 0.00018 39_[+2]_33 chrX:16826622-16826702 0.00018 6_[+2]_66 chrI:8718296-8718376 0.00018 19_[+2]_53 chrIV:7611586-7611666 0.0002 48_[+2]_24 chrX:5129593-5129673 0.0002 50_[+2]_22 chrX:9213674-9213754 0.0002 11_[+2]_61 chrIV:8515546-8515626 0.0002 1_[+2]_71 chrV:11213557-11213637 0.0002 29_[+2]_43 chrX:3351636-3351716 0.00027 25_[+2]_47 chrV:6485285-6485365 0.00027 5_[+2]_67 chrII:5860756-5860836 0.00027 8_[+2]_64 chrIII:3543223-3543303 0.00027 33_[+2]_39 chrIII:8221209-8221289 0.00027 35_[+2]_37 chrX:16376139-16376219 0.00027 56_[+2]_16 chrI:367348-367428 0.00027 48_[+2]_24 chrX:6953525-6953605 0.0003 33_[+2]_39 chrIV:17108342-17108422 0.00038 20_[+2]_52 chrV:4552885-4552965 0.00038 35_[+2]_37 chrIII:13474668-13474748 0.00038 49_[+2]_23 chrV:20653485-20653565 0.00038 13_[+2]_59 chrX:9804859-9804939 0.00038 3_[+2]_69 chrII:4584509-4584589 0.0004 39_[+2]_33 chrX:15555467-15555547 0.00043 68_[+2]_4 chrIV:16049000-16049080 0.00043 71_[+2]_1 chrIII:4612817-4612897 0.00043 46_[+2]_26 chrI:3906363-3906443 0.00043 11_[+2]_61 chrIII:4451092-4451172 0.00043 21_[+2]_51 chrII:9313455-9313535 0.00043 42_[+2]_30 chrV:4357551-4357631 0.00047 37_[+2]_35 chrII:8589402-8589482 0.00047 27_[+2]_45 chrII:12374188-12374268 0.00054 16_[+2]_56 chrIV:4570723-4570803 0.00054 24_[+2]_48 chrX:10509053-10509133 0.00058 52_[+2]_20 chrI:7515981-7516061 0.00058 20_[+2]_52 chrX:7457359-7457439 0.00062 18_[+2]_54 chrV:8797091-8797171 0.00062 53_[+2]_19 chrI:9516118-9516198 0.00062 16_[+2]_56 chrI:4958852-4958932 0.00062 37_[+2]_35 chrIV:6887861-6887941 0.00062 2_[+2]_70 chrV:5755066-5755146 0.00062 6_[+2]_66 chrI:12899126-12899206 0.00062 16_[+2]_56 chrV:4359253-4359333 0.00062 24_[+2]_48 chrIII:11848461-11848541 0.00062 64_[+2]_8 chrII:7894818-7894898 0.00062 3_[+2]_69 chrIV:13487160-13487240 0.00062 42_[+2]_30 chrII:10247699-10247779 0.00062 33_[+2]_39 chrIII:12877978-12878058 0.00062 42_[+2]_30 chrII:5702754-5702834 0.00067 71_[+2]_1 chrIV:7948505-7948585 0.00067 38_[+2]_34 chrV:12421521-12421601 0.00067 30_[+2]_42 chrII:6409398-6409478 0.00074 60_[+2]_12 chrX:8311742-8311822 0.00074 51_[+2]_21 chrIII:3311271-3311351 0.00085 40_[+2]_32 chrX:7654131-7654211 0.00085 2_[+2]_70 chrV:4967427-4967507 0.00085 1_[+2]_71 chrX:5205709-5205789 0.00085 20_[+2]_52 chrV:9769574-9769654 0.00085 22_[+2]_50 chrX:15155221-15155301 0.00085 8_[+2]_64 chrV:16746739-16746819 0.00093 61_[+2]_11 chrI:636781-636861 0.00093 9_[+2]_63 chrI:1675910-1675990 0.00093 47_[+2]_25 chrV:9247574-9247654 0.00098 45_[+2]_27 chrX:8426346-8426426 0.00098 61_[+2]_11 chrX:10505309-10505389 0.0011 57_[+2]_15 chrX:2108386-2108466 0.0011 14_[+2]_58 chrIII:3136786-3136866 0.0011 71_[+2]_1 chrX:14243712-14243792 0.0011 38_[+2]_34 chrI:4914962-4915042 0.0011 25_[+2]_47 chrI:2709717-2709797 0.0012 30_[+2]_42 chrX:12532599-12532679 0.0015 44_[+2]_28 chrIII:6013172-6013252 0.0015 61_[+2]_11 chrIV:4586154-4586234 0.0016 7_[+2]_65 chrX:14329487-14329567 0.0016 60_[+2]_12 chrIV:13013418-13013498 0.0016 40_[+2]_32 chrIV:5755057-5755137 0.0016 18_[+2]_54 chrIV:16401293-16401373 0.0017 24_[+2]_48 chrX:2455024-2455104 0.0017 20_[+2]_52 chrIII:7708992-7709072 0.002 41_[+2]_31 chrIV:12653242-12653322 0.0024 9_[+2]_63 chrIV:8070996-8071076 0.0025 29_[+2]_43 chrII:6411929-6412009 0.0028 51_[+2]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARARRRA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GARARRRA width=8 seqs=107 chrII:13294750-13294830 ( 27) GAGAGAGA 1 chrV:9270568-9270648 ( 60) GAGAGAGA 1 chrII:10755632-10755712 ( 51) GAGAGAGA 1 chrII:12604484-12604564 ( 15) GAGAGAGA 1 chrX:14486669-14486749 ( 31) GAGAGAGA 1 chrIV:4404014-4404094 ( 13) GAGAGAGA 1 chrIII:9879224-9879304 ( 31) GAGAGAGA 1 chrV:13024654-13024734 ( 4) GAGAGAGA 1 chrX:852877-852957 ( 28) GAGAGAGA 1 chrIII:13131432-13131512 ( 55) GAGAGAGA 1 chrX:3040717-3040797 ( 67) GAGAGAGA 1 chrI:6958800-6958880 ( 52) GAGAAAGA 1 chrX:2707760-2707840 ( 68) GAGAAAGA 1 chrIV:5860925-5861005 ( 73) GAGAAAGA 1 chrI:8119341-8119421 ( 28) GAGAGAGG 1 chrIV:7620538-7620618 ( 65) GAGAGAAA 1 chrV:14695488-14695568 ( 44) GAAAGAGA 1 chrX:952675-952755 ( 43) GAAAGAGA 1 chrV:15634-15714 ( 46) GAGAAAAA 1 chrV:15771113-15771193 ( 57) GAGAAAAA 1 chrX:10597714-10597794 ( 58) GAGAAAAA 1 chrV:20839657-20839737 ( 59) GAGAAAAA 1 chrIV:4702248-4702328 ( 57) GAGAAAAA 1 chrII:14346412-14346492 ( 70) GAGAAAAA 1 chrV:9664777-9664857 ( 8) GAGAAGGA 1 chrV:20464896-20464976 ( 15) GAAAAAGA 1 chrIII:8283060-8283140 ( 40) GAAAAAGA 1 chrX:16826622-16826702 ( 7) GAAAAAGA 1 chrI:8718296-8718376 ( 20) GAAAAAGA 1 chrIV:7611586-7611666 ( 49) GAGAGAAG 1 chrX:5129593-5129673 ( 51) GAGAGAAG 1 chrX:9213674-9213754 ( 12) GAGAGAAG 1 chrIV:8515546-8515626 ( 2) GAGAGAAG 1 chrV:11213557-11213637 ( 30) GAGAGAAG 1 chrX:3351636-3351716 ( 26) GAGAGGAA 1 chrV:6485285-6485365 ( 6) GAGAGGGG 1 chrII:5860756-5860836 ( 9) GAAAGAAA 1 chrIII:3543223-3543303 ( 34) GAAAGAGG 1 chrIII:8221209-8221289 ( 36) GAAAGAAA 1 chrX:16376139-16376219 ( 57) GAGAGGGG 1 chrI:367348-367428 ( 49) GAAAGAGG 1 chrX:6953525-6953605 ( 34) GAGAAAAG 1 chrIV:17108342-17108422 ( 21) GAAAAAGG 1 chrV:4552885-4552965 ( 36) GAAAAAGG 1 chrIII:13474668-13474748 ( 50) GAAAAAAA 1 chrV:20653485-20653565 ( 14) GAGAAGAA 1 chrX:9804859-9804939 ( 4) GAGAAGAA 1 chrII:4584509-4584589 ( 40) GAAAAGGA 1 chrX:15555467-15555547 ( 69) AAGAGAGA 1 chrIV:16049000-16049080 ( 72) AAGAGAGA 1 chrIII:4612817-4612897 ( 47) AAGAGAGA 1 chrI:3906363-3906443 ( 12) AAGAGAGA 1 chrIII:4451092-4451172 ( 22) GAGAGACA 1 chrII:9313455-9313535 ( 43) GAGAGACA 1 chrV:4357551-4357631 ( 38) GAGAGGAG 1 chrII:8589402-8589482 ( 28) GAAAGAAG 1 chrII:12374188-12374268 ( 17) AAGAAAGA 1 chrIV:4570723-4570803 ( 25) AAGAAAGA 1 chrX:10509053-10509133 ( 53) GAAAAAAG 1 chrI:7515981-7516061 ( 21) GAGAAGAG 1 chrX:7457359-7457439 ( 19) GAAAAGAA 1 chrV:8797091-8797171 ( 54) GAAAAGGG 1 chrI:9516118-9516198 ( 17) GAAAAGAA 1 chrI:4958852-4958932 ( 38) GAAAAGGG 1 chrIV:6887861-6887941 ( 3) GAAAAGAA 1 chrV:5755066-5755146 ( 7) GAAAAGGG 1 chrI:12899126-12899206 ( 17) GAAAAGGG 1 chrV:4359253-4359333 ( 25) GAAAAGAA 1 chrIII:11848461-11848541 ( 65) GAAAAGGG 1 chrII:7894818-7894898 ( 4) GAAAAGGG 1 chrIV:13487160-13487240 ( 43) GAAAAGAA 1 chrII:10247699-10247779 ( 34) GAAAAGAA 1 chrIII:12877978-12878058 ( 43) GAAAAGGG 1 chrII:5702754-5702834 ( 72) AAGAGAAA 1 chrIV:7948505-7948585 ( 39) GAGAGACG 1 chrV:12421521-12421601 ( 31) AAGAGAAA 1 chrII:6409398-6409478 ( 61) AAAAGAGA 1 chrX:8311742-8311822 ( 52) AAGAGGGA 1 chrIII:3311271-3311351 ( 41) GAGAGCGA 1 chrX:7654131-7654211 ( 3) GAGAAACG 1 chrV:4967427-4967507 ( 2) GAAAGGAG 1 chrX:5205709-5205789 ( 21) GAGAGCGA 1 chrV:9769574-9769654 ( 23) GAGAGCGA 1 chrX:15155221-15155301 ( 9) GAGAGCGA 1 chrV:16746739-16746819 ( 62) GAAAAACA 1 chrI:636781-636861 ( 10) GAAAAACA 1 chrI:1675910-1675990 ( 48) GAAAAACA 1 chrV:9247574-9247654 ( 46) GAGAACGA 1 chrX:8426346-8426426 ( 62) GAGGAAGA 1 chrX:10505309-10505389 ( 58) GAGAGGCG 1 chrX:2108386-2108466 ( 15) AAGAGGGG 1 chrIII:3136786-3136866 ( 72) AAGAGGAA 1 chrX:14243712-14243792 ( 39) GAAAGACG 1 chrI:4914962-4915042 ( 26) AAAAGAGG 1 chrI:2709717-2709797 ( 31) GAGGGAAA 1 chrX:12532599-12532679 ( 45) AAAAAGGA 1 chrIII:6013172-6013252 ( 62) GAGGAAAA 1 chrIV:4586154-4586234 ( 8) GAGGAGGA 1 chrX:14329487-14329567 ( 61) AAGAGACA 1 chrIV:13013418-13013498 ( 41) GAAAACGA 1 chrIV:5755057-5755137 ( 19) AAGAGGAG 1 chrIV:16401293-16401373 ( 25) AAGAAACA 1 chrX:2455024-2455104 ( 21) AAAAGGAA 1 chrIII:7708992-7709072 ( 42) GAGGAAAG 1 chrIV:12653242-12653322 ( 10) GAAGGGGG 1 chrIV:8070996-8071076 ( 30) GAGGAGAG 1 chrII:6411929-6412009 ( 52) AAGGGGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARARRRA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.5973 E= 1.2e-004 -60 -1339 180 -1339 189 -1339 -1339 -1339 47 -1339 140 -1339 178 -1339 -166 -1339 82 -1339 114 -1339 121 -203 42 -1339 43 -116 117 -1339 132 -1339 47 -1339 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARARRRA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 107 E= 1.2e-004 0.177570 0.000000 0.822430 0.000000 1.000000 0.000000 0.000000 0.000000 0.373832 0.000000 0.626168 0.000000 0.925234 0.000000 0.074766 0.000000 0.476636 0.000000 0.523364 0.000000 0.626168 0.056075 0.317757 0.000000 0.364486 0.102804 0.532710 0.000000 0.672897 0.000000 0.327103 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARARRRA MEME-2 regular expression -------------------------------------------------------------------------------- GA[GA]A[GA][AG][GA][AG] -------------------------------------------------------------------------------- Time 11.22 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCGTCT MEME-3 width = 8 sites = 12 llr = 130 E-value = 2.6e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a::8::a: probability G ::a:a::: matrix T :a:2:a:a bits 2.1 * * * * 1.9 *** **** 1.7 *** **** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (15.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGCGTCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:18589696-18589776 24 1.26e-05 CCCTCCCGGT CTGCGTCT CTCCCACCTC chrIII:4515339-4515419 61 1.26e-05 TTGCGGGTGT CTGCGTCT CTTGGTCTTT chrII:8587955-8588035 47 1.26e-05 GAAGCACTGT CTGCGTCT CCAATTTCCA chrIV:3351517-3351597 6 1.26e-05 TTTCT CTGCGTCT CCATTGTCTT chrIII:3220492-3220572 6 1.26e-05 ATCCT CTGCGTCT CTCGCCTCAC chrIII:3136786-3136866 29 1.26e-05 TGTGTAGTGT CTGCGTCT AATTACATCA chrX:9089709-9089789 47 1.26e-05 CATTTGTTCT CTGCGTCT CTCGTGGATT chrV:966290-966370 40 1.26e-05 TATGTAAAGT CTGCGTCT CTATAGCCAC chrIV:1213345-1213425 39 1.26e-05 CTTTTGCTCA CTGCGTCT CTTTATGGCG chrIII:4452879-4452959 70 1.26e-05 GTTTTTTCGT CTGCGTCT CTA chrIV:5970635-5970715 8 2.70e-05 TGAATGT CTGTGTCT CTTTAAATCA chrV:20653485-20653565 49 2.70e-05 AGTTTTTGCA CTGTGTCT TCACATTTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:18589696-18589776 1.3e-05 23_[+3]_49 chrIII:4515339-4515419 1.3e-05 60_[+3]_12 chrII:8587955-8588035 1.3e-05 46_[+3]_26 chrIV:3351517-3351597 1.3e-05 5_[+3]_67 chrIII:3220492-3220572 1.3e-05 5_[+3]_67 chrIII:3136786-3136866 1.3e-05 28_[+3]_44 chrX:9089709-9089789 1.3e-05 46_[+3]_26 chrV:966290-966370 1.3e-05 39_[+3]_33 chrIV:1213345-1213425 1.3e-05 38_[+3]_34 chrIII:4452879-4452959 1.3e-05 69_[+3]_3 chrIV:5970635-5970715 2.7e-05 7_[+3]_65 chrV:20653485-20653565 2.7e-05 48_[+3]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCGTCT width=8 seqs=12 chrV:18589696-18589776 ( 24) CTGCGTCT 1 chrIII:4515339-4515419 ( 61) CTGCGTCT 1 chrII:8587955-8588035 ( 47) CTGCGTCT 1 chrIV:3351517-3351597 ( 6) CTGCGTCT 1 chrIII:3220492-3220572 ( 6) CTGCGTCT 1 chrIII:3136786-3136866 ( 29) CTGCGTCT 1 chrX:9089709-9089789 ( 47) CTGCGTCT 1 chrV:966290-966370 ( 40) CTGCGTCT 1 chrIV:1213345-1213425 ( 39) CTGCGTCT 1 chrIII:4452879-4452959 ( 70) CTGCGTCT 1 chrIV:5970635-5970715 ( 8) CTGTGTCT 1 chrV:20653485-20653565 ( 49) CTGTGTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2284 E= 2.6e-002 -1023 212 -1023 -1023 -1023 -1023 -1023 192 -1023 -1023 208 -1023 -1023 186 -1023 -66 -1023 -1023 208 -1023 -1023 -1023 -1023 192 -1023 212 -1023 -1023 -1023 -1023 -1023 192 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 2.6e-002 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.833333 0.000000 0.166667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-3 regular expression -------------------------------------------------------------------------------- CTGCGTCT -------------------------------------------------------------------------------- Time 14.70 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCCCCAC MEME-4 width = 8 sites = 16 llr = 155 E-value = 7.4e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCCCCAC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :3:2::9: pos.-specific C ::a89a1a probability G a7::1::: matrix T :::1:::: bits 2.1 * * * * 1.9 * * * * 1.7 * * ** * 1.5 * * **** Relative 1.3 * * **** Entropy 1.1 ******** (14.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGCCCCAC consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCCCAC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:12899126-12899206 9 9.76e-06 AAAAAAGA GGCCCCAC GAAAAGGGGA chrV:4552885-4552965 11 9.76e-06 ATTTTATTGA GGCCCCAC GAAAAGGGGA chrIII:11848461-11848541 37 9.76e-06 TCGGTACGGA GGCCCCAC AGAAAGGAGG chrII:10247699-10247779 58 9.76e-06 AGGTGTGGGA GGCCCCAC GAAAAGGGGA chrI:5175698-5175778 66 9.76e-06 GTTTTTCTGA GGCCCCAC GAAAAGG chrI:367348-367428 25 9.76e-06 CCAGTTTTGA GGCCCCAC GAAAAGGGAG chrIII:12877978-12878058 35 9.76e-06 GAAAAAACGA GGCCCCAC GAAAAGGGGA chrX:5519651-5519731 50 2.09e-05 TGGAATTACG GACCCCAC TACATGAGCC chrIII:8512437-8512517 20 2.09e-05 GCGGTGTGAC GACCCCAC CAATAAGTGA chrIV:1213345-1213425 18 2.09e-05 CGGCTCATAA GACCCCAC CACCTTTTGC chrIV:13487160-13487240 3 3.23e-05 GA GGCACCAC GTTTTCAACA chrII:15008630-15008710 2 5.37e-05 A GACACCAC AGGTTTCTTG chrIV:17108342-17108422 13 5.37e-05 TATGAGCACA GACACCAC GAAAAAGGGG chrX:6953525-6953605 2 5.37e-05 G GGCCCCCC TCGACGCGCT chrII:4575455-4575535 31 6.49e-05 AAATTCCGGA GGCTCCAC TAGTGCTCAG chrX:14127440-14127520 62 7.50e-05 TATCGTGTGA GGCCGCAC AACCTCCTCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCCCAC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:12899126-12899206 9.8e-06 8_[+4]_64 chrV:4552885-4552965 9.8e-06 10_[+4]_62 chrIII:11848461-11848541 9.8e-06 36_[+4]_36 chrII:10247699-10247779 9.8e-06 57_[+4]_15 chrI:5175698-5175778 9.8e-06 65_[+4]_7 chrI:367348-367428 9.8e-06 24_[+4]_48 chrIII:12877978-12878058 9.8e-06 34_[+4]_38 chrX:5519651-5519731 2.1e-05 49_[+4]_23 chrIII:8512437-8512517 2.1e-05 19_[+4]_53 chrIV:1213345-1213425 2.1e-05 17_[+4]_55 chrIV:13487160-13487240 3.2e-05 2_[+4]_70 chrII:15008630-15008710 5.4e-05 1_[+4]_71 chrIV:17108342-17108422 5.4e-05 12_[+4]_60 chrX:6953525-6953605 5.4e-05 1_[+4]_71 chrII:4575455-4575535 6.5e-05 30_[+4]_42 chrX:14127440-14127520 7.5e-05 61_[+4]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCCCAC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCCCCAC width=8 seqs=16 chrI:12899126-12899206 ( 9) GGCCCCAC 1 chrV:4552885-4552965 ( 11) GGCCCCAC 1 chrIII:11848461-11848541 ( 37) GGCCCCAC 1 chrII:10247699-10247779 ( 58) GGCCCCAC 1 chrI:5175698-5175778 ( 66) GGCCCCAC 1 chrI:367348-367428 ( 25) GGCCCCAC 1 chrIII:12877978-12878058 ( 35) GGCCCCAC 1 chrX:5519651-5519731 ( 50) GACCCCAC 1 chrIII:8512437-8512517 ( 20) GACCCCAC 1 chrIV:1213345-1213425 ( 18) GACCCCAC 1 chrIV:13487160-13487240 ( 3) GGCACCAC 1 chrII:15008630-15008710 ( 2) GACACCAC 1 chrIV:17108342-17108422 ( 13) GACACCAC 1 chrX:6953525-6953605 ( 2) GGCCCCCC 1 chrII:4575455-4575535 ( 31) GGCTCCAC 1 chrX:14127440-14127520 ( 62) GGCCGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCCCAC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8918 E= 7.4e+000 -1064 -1064 208 -1064 21 -1064 154 -1064 -1064 212 -1064 -1064 -52 171 -1064 -207 -1064 203 -192 -1064 -1064 212 -1064 -1064 180 -188 -1064 -1064 -1064 212 -1064 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCCCAC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 7.4e+000 0.000000 0.000000 1.000000 0.000000 0.312500 0.000000 0.687500 0.000000 0.000000 1.000000 0.000000 0.000000 0.187500 0.750000 0.000000 0.062500 0.000000 0.937500 0.062500 0.000000 0.000000 1.000000 0.000000 0.000000 0.937500 0.062500 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCCCCAC MEME-4 regular expression -------------------------------------------------------------------------------- G[GA]CCCCAC -------------------------------------------------------------------------------- Time 18.17 secs. ******************************************************************************** ******************************************************************************** MOTIF YCCCCTYY MEME-5 width = 8 sites = 18 llr = 168 E-value = 6.5e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif YCCCCTYY MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 5aaaa:44 probability G :::::::: matrix T 5::::a66 bits 2.1 **** 1.9 ***** 1.7 ***** 1.5 ***** Relative 1.3 ***** Entropy 1.1 ******** (13.5 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCCCTTT consensus T CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCCCCTYY MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:3351636-3351716 46 1.18e-05 CATACACCCC CCCCCTTT CTTCCTAGCG chrI:1213505-1213585 42 1.18e-05 CCGTAGAATT CCCCCTTT CGTAGATCCC chrIII:4452879-4452959 27 1.18e-05 AAAATAATCA CCCCCTTT TTGGACTCCG chrV:14617931-14618011 52 1.18e-05 TTTTCTGAAT CCCCCTTT CACTTCATTA chrII:11567395-11567475 2 3.58e-05 G CCCCCTTC GGACCTCGCA chrIV:4401962-4402042 15 3.58e-05 TTTTTGCAGA TCCCCTTT TCGTTCTGCT chrII:7895049-7895129 7 3.58e-05 CGCAGA TCCCCTTT TTGCAGATCC chrI:4961767-4961847 6 3.58e-05 GCAGA TCCCCTTT TTGCAGATCG chrV:3218765-3218845 13 3.58e-05 TCCCATTAGT TCCCCTTT TCGCGTGGGG chrIII:7708992-7709072 3 3.58e-05 GC TCCCCTTT TCGTGGGGCC chrII:5860756-5860836 45 4.76e-05 CCCATTGTCC TCCCCTTC AACGATGTGT chrII:9574564-9574644 46 5.79e-05 TGGGGGCCAC CCCCCTCT ACCTAACTAA chrI:2697154-2697234 67 7.87e-05 AGACATATAT CCCCCTCC CTATTT chrIV:4570723-4570803 51 7.87e-05 CGCGCAGTGC CCCCCTCC CCGAGTCTTC chrIV:1908606-1908686 22 7.87e-05 TCTGAGCTCC CCCCCTCC TCGAAGGGGT chrI:636781-636861 35 8.91e-05 GGCCTAGCGT TCCCCTCC TAGTCCACGG chrIII:8417023-8417103 54 8.91e-05 ATTACCGTAT TCCCCTCC ATTGCGCTTT chrI:14146274-14146354 51 8.91e-05 CTATGAATGC TCCCCTCC TTTGTCTCCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCCCCTYY MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:3351636-3351716 1.2e-05 45_[+5]_27 chrI:1213505-1213585 1.2e-05 41_[+5]_31 chrIII:4452879-4452959 1.2e-05 26_[+5]_46 chrV:14617931-14618011 1.2e-05 51_[+5]_21 chrII:11567395-11567475 3.6e-05 1_[+5]_71 chrIV:4401962-4402042 3.6e-05 14_[+5]_58 chrII:7895049-7895129 3.6e-05 6_[+5]_66 chrI:4961767-4961847 3.6e-05 5_[+5]_67 chrV:3218765-3218845 3.6e-05 12_[+5]_60 chrIII:7708992-7709072 3.6e-05 2_[+5]_70 chrII:5860756-5860836 4.8e-05 44_[+5]_28 chrII:9574564-9574644 5.8e-05 45_[+5]_27 chrI:2697154-2697234 7.9e-05 66_[+5]_6 chrIV:4570723-4570803 7.9e-05 50_[+5]_22 chrIV:1908606-1908686 7.9e-05 21_[+5]_51 chrI:636781-636861 8.9e-05 34_[+5]_38 chrIII:8417023-8417103 8.9e-05 53_[+5]_19 chrI:14146274-14146354 8.9e-05 50_[+5]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCCCCTYY MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YCCCCTYY width=8 seqs=18 chrX:3351636-3351716 ( 46) CCCCCTTT 1 chrI:1213505-1213585 ( 42) CCCCCTTT 1 chrIII:4452879-4452959 ( 27) CCCCCTTT 1 chrV:14617931-14618011 ( 52) CCCCCTTT 1 chrII:11567395-11567475 ( 2) CCCCCTTC 1 chrIV:4401962-4402042 ( 15) TCCCCTTT 1 chrII:7895049-7895129 ( 7) TCCCCTTT 1 chrI:4961767-4961847 ( 6) TCCCCTTT 1 chrV:3218765-3218845 ( 13) TCCCCTTT 1 chrIII:7708992-7709072 ( 3) TCCCCTTT 1 chrII:5860756-5860836 ( 45) TCCCCTTC 1 chrII:9574564-9574644 ( 46) CCCCCTCT 1 chrI:2697154-2697234 ( 67) CCCCCTCC 1 chrIV:4570723-4570803 ( 51) CCCCCTCC 1 chrIV:1908606-1908686 ( 22) CCCCCTCC 1 chrI:636781-636861 ( 35) TCCCCTCC 1 chrIII:8417023-8417103 ( 54) TCCCCTCC 1 chrI:14146274-14146354 ( 51) TCCCCTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCCCCTYY MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.7767 E= 6.5e+001 -1081 112 -1081 92 -1081 212 -1081 -1081 -1081 212 -1081 -1081 -1081 212 -1081 -1081 -1081 212 -1081 -1081 -1081 -1081 -1081 192 -1081 76 -1081 121 -1081 95 -1081 107 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCCCCTYY MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 6.5e+001 0.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.388889 0.000000 0.611111 0.000000 0.444444 0.000000 0.555556 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YCCCCTYY MEME-5 regular expression -------------------------------------------------------------------------------- [CT]CCCCT[TC][TC] -------------------------------------------------------------------------------- Time 21.59 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:14617931-14618011 2.17e-03 51_[+5(1.18e-05)]_21 chrX:3040717-3040797 4.25e-02 66_[+2(1.68e-05)]_6 chrI:819593-819673 4.14e-03 9_[+1(2.92e-05)]_63 chrIII:8218145-8218225 4.24e-02 80 chrIII:13131432-13131512 2.00e-01 52_[+2(1.68e-05)]_20 chrII:4575455-4575535 1.69e-01 30_[+4(6.49e-05)]_42 chrI:4914962-4915042 1.61e-02 14_[+1(2.92e-05)]_58 chrX:8006137-8006217 7.83e-04 42_[+1(1.36e-05)]_30 chrII:14346412-14346492 4.25e-01 80 chrX:12686566-12686646 9.18e-01 80 chrX:3078609-3078689 2.05e-01 80 chrX:852877-852957 7.72e-03 13_[+2(6.97e-05)]_6_[+2(1.68e-05)]_\ 45 chrII:9313455-9313535 5.12e-01 80 chrII:9574564-9574644 4.16e-02 45_[+5(5.79e-05)]_27 chrX:15155221-15155301 1.08e-02 80 chrV:9395295-9395375 8.04e-01 80 chrI:8718296-8718376 1.67e-01 80 chrIII:12877978-12878058 1.94e-02 34_[+4(9.76e-06)]_38 chrX:9804859-9804939 2.36e-02 80 chrIV:13533233-13533313 1.60e-02 70_[+1(8.61e-05)]_2 chrI:367348-367428 8.29e-03 24_[+4(9.76e-06)]_22_[+4(3.23e-05)]_\ 18 chrI:5722361-5722441 8.55e-03 70_[+1(7.05e-05)]_2 chrX:16991582-16991662 2.31e-01 80 chrII:8589402-8589482 3.28e-01 80 chrI:5175698-5175778 1.30e-02 65_[+4(9.76e-06)]_7 chrI:12773403-12773483 1.90e-01 69_[+1(7.05e-05)]_3 chrIV:1447125-1447205 9.77e-01 80 chrIV:12816769-12816849 3.37e-01 80 chrIII:4452879-4452959 8.43e-05 26_[+5(1.18e-05)]_35_[+3(1.26e-05)]_\ 3 chrX:16826622-16826702 1.43e-01 80 chrIII:4451092-4451172 6.21e-01 80 chrI:7515981-7516061 5.85e-02 80 chrIV:5860925-5861005 7.62e-03 72_[+2(3.59e-05)] chrV:12211209-12211289 3.98e-01 80 chrV:12421521-12421601 7.53e-02 80 chrX:16376139-16376219 1.41e-01 80 chrIV:1213345-1213425 6.08e-05 17_[+4(2.09e-05)]_13_[+3(1.26e-05)]_\ 34 chrIV:4401762-4401842 4.02e-01 80 chrX:1005167-1005247 9.97e-01 80 chrI:4976275-4976355 6.85e-02 3_[+1(7.05e-05)]_69 chrV:9769574-9769654 6.23e-01 80 chrIII:7708992-7709072 4.30e-02 2_[+5(3.58e-05)]_70 chrII:10247699-10247779 9.28e-03 57_[+4(9.76e-06)]_15 chrX:8426346-8426426 4.67e-01 80 chrIII:6013172-6013252 2.45e-01 80 chrX:5205709-5205789 4.79e-01 80 chrIV:8070996-8071076 9.36e-02 80 chrIII:9451100-9451180 7.92e-01 80 chrII:10373690-10373770 4.26e-01 80 chrV:11213557-11213637 2.60e-01 80 chrIV:12653242-12653322 7.80e-02 80 chrI:14146274-14146354 4.24e-03 50_[+5(8.91e-05)]_22 chrIV:9523296-9523376 4.14e-02 80 chrI:2871436-2871516 7.07e-01 80 chrIV:4702248-4702328 2.75e-01 80 chrI:8783820-8783900 7.25e-01 80 chrI:1989382-1989462 7.21e-01 80 chrV:4967427-4967507 7.55e-01 80 chrIV:13487160-13487240 1.30e-02 2_[+4(3.23e-05)]_70 chrI:1096195-1096275 3.17e-01 80 chrIII:3424061-3424141 4.47e-01 80 chrV:3218765-3218845 7.48e-04 12_[+5(3.58e-05)]_10_[+1(1.36e-05)]_\ 42 chrIII:8417023-8417103 7.12e-02 53_[+5(8.91e-05)]_19 chrII:7894818-7894898 4.67e-02 80 chrX:11367824-11367904 1.14e-02 80 chrX:13944337-13944417 5.97e-01 80 chrI:13418745-13418825 7.03e-01 80 chrX:8311742-8311822 1.36e-01 80 chrIII:8216399-8216479 5.63e-02 80 chrX:14243712-14243792 1.63e-01 80 chrIV:1908606-1908686 6.04e-02 21_[+5(7.87e-05)]_51 chrX:737159-737239 7.32e-02 80 chrI:4961767-4961847 4.24e-02 5_[+5(3.58e-05)]_24_[+5(3.58e-05)]_\ 35 chrIV:10867849-10867929 9.94e-01 80 chrII:6411929-6412009 3.49e-01 80 chrII:6941680-6941760 8.42e-01 80 chrV:20839657-20839737 6.89e-02 80 chrII:7895049-7895129 3.01e-02 6_[+5(3.58e-05)]_7_[+5(3.58e-05)]_9_\ [+5(3.58e-05)]_34 chrV:14443781-14443861 9.54e-01 80 chrV:966290-966370 2.91e-03 39_[+3(1.26e-05)]_33 chrX:10598915-10598995 7.16e-01 80 chrIV:4401962-4402042 2.59e-02 14_[+5(3.58e-05)]_9_[+5(3.58e-05)]_\ 41 chrIV:628209-628289 2.50e-01 80 chrI:1213505-1213585 2.27e-03 41_[+5(1.18e-05)]_31 chrX:10509053-10509133 3.07e-01 80 chrX:2707760-2707840 1.45e-02 67_[+2(3.59e-05)]_5 chrV:5846853-5846933 8.86e-01 80 chrIV:4505121-4505201 5.54e-01 80 chrX:6953525-6953605 2.82e-03 1_[+4(5.37e-05)]_71 chrX:7463811-7463891 3.43e-01 80 chrI:2709717-2709797 2.14e-01 80 chrIII:8221209-8221289 5.07e-01 80 chrX:9089709-9089789 4.28e-04 46_[+3(1.26e-05)]_13_[+1(7.05e-05)]_\ 5 chrX:2049003-2049083 7.63e-01 80 chrIII:3543223-3543303 9.98e-03 80 chrX:9510045-9510125 1.81e-01 80 chrX:7460661-7460741 8.21e-01 80 chrV:20653485-20653565 2.16e-04 48_[+3(2.70e-05)]_24 chrV:13024654-13024734 1.41e-01 3_[+2(1.68e-05)]_69 chrIII:8283060-8283140 3.75e-02 80 chrIII:13474668-13474748 2.65e-01 80 chrI:9435230-9435310 1.35e-02 58_[+1(4.48e-05)]_14 chrII:6940041-6940121 9.66e-01 80 chrIII:11093620-11093700 9.08e-01 80 chrIII:11848461-11848541 9.47e-03 36_[+4(9.76e-06)]_8_[+4(9.76e-06)]_\ 20 chrI:1675910-1675990 3.98e-01 80 chrV:12897498-12897578 9.79e-01 80 chrX:9814593-9814673 4.82e-02 80 chrIII:8503436-8503516 6.88e-03 44_[+1(1.36e-05)]_6_[+1(1.36e-05)]_\ 6_[+1(1.36e-05)] chrX:11475855-11475935 1.37e-02 60_[+1(7.05e-05)]_12 chrI:5724601-5724681 6.38e-01 80 chrX:4576369-4576449 9.18e-01 80 chrIII:6367862-6367942 2.35e-01 80 chrIV:13013418-13013498 6.28e-02 80 chrIII:3136786-3136866 4.63e-03 28_[+3(1.26e-05)]_44 chrIV:7948505-7948585 1.88e-01 80 chrIII:8512437-8512517 1.75e-04 19_[+4(2.09e-05)]_36_[+1(7.05e-05)]_\ 9 chrX:2108386-2108466 7.06e-01 80 chrIII:9879224-9879304 1.81e-01 30_[+2(1.68e-05)]_42 chrIV:4404014-4404094 3.78e-04 4_[+2(1.68e-05)]_[+2(1.68e-05)]_27_\ [+1(2.92e-05)]_25 chrX:2455024-2455104 4.41e-01 80 chrX:12180797-12180877 9.53e-01 80 chrI:1280166-1280246 2.83e-01 80 chrII:8223611-8223691 6.66e-01 80 chrI:2100028-2100108 6.87e-01 80 chrIV:4570723-4570803 2.60e-03 50_[+5(7.87e-05)]_22 chrI:1315570-1315650 7.47e-02 80 chrIV:7620538-7620618 1.17e-01 64_[+2(6.97e-05)]_8 chrV:13401586-13401666 9.11e-01 80 chrX:5802824-5802904 9.92e-01 80 chrX:12407404-12407484 5.34e-01 80 chrV:4359253-4359333 6.18e-01 80 chrX:15725744-15725824 1.32e-02 62_[+1(7.05e-05)]_10 chrV:4552885-4552965 9.92e-03 10_[+4(9.76e-06)]_62 chrV:20464896-20464976 1.49e-01 80 chrX:10597714-10597794 2.29e-01 80 chrII:5860756-5860836 8.29e-04 44_[+5(4.76e-05)]_28 chrIII:3789892-3789972 1.00e+00 80 chrX:14486669-14486749 2.46e-02 30_[+2(1.68e-05)]_42 chrX:952675-952755 2.88e-01 80 chrX:15347876-15347956 3.28e-01 80 chrIV:17108342-17108422 1.33e-04 12_[+4(5.37e-05)]_60 chrI:8119341-8119421 8.96e-02 27_[+2(6.97e-05)]_45 chrIV:15259648-15259728 3.68e-02 80 chrII:5965804-5965884 6.44e-01 80 chrIV:14299094-14299174 8.29e-01 80 chrIV:17099277-17099357 8.17e-02 48_[+1(2.92e-05)]_24 chrII:15008630-15008710 7.37e-02 1_[+4(5.37e-05)]_71 chrI:12899126-12899206 1.46e-02 8_[+4(9.76e-06)]_64 chrX:12532599-12532679 7.11e-01 80 chrII:5702754-5702834 3.73e-01 80 chrI:6284728-6284808 7.29e-01 80 chrIII:3220492-3220572 3.02e-04 5_[+3(1.26e-05)]_15_[+1(7.05e-05)]_\ 44 chrX:14329487-14329567 1.75e-02 80 chrII:6828398-6828478 1.25e-01 80 chrII:6409398-6409478 6.78e-01 80 chrIV:16401293-16401373 2.32e-01 80 chrV:11529432-11529512 1.32e-01 80 chrIV:8515546-8515626 3.72e-01 80 chrX:3049413-3049493 9.96e-01 80 chrIV:5755057-5755137 8.37e-01 80 chrI:3906363-3906443 5.24e-01 80 chrII:12604484-12604564 4.23e-02 14_[+2(1.68e-05)]_58 chrV:9664777-9664857 2.42e-01 80 chrII:10370914-10370994 4.37e-01 80 chrII:4584509-4584589 1.07e-01 80 chrII:8951235-8951315 9.88e-01 80 chrV:5755066-5755146 9.87e-02 80 chrV:9247574-9247654 3.72e-01 80 chrI:6958800-6958880 3.53e-02 51_[+2(3.59e-05)]_21 chrII:10755632-10755712 1.68e-02 50_[+2(1.68e-05)]_22 chrI:2710638-2710718 5.63e-01 80 chrX:14127440-14127520 7.01e-04 20_[+1(1.36e-05)]_33_[+4(7.50e-05)]_\ 11 chrIII:4612817-4612897 6.89e-01 80 chrIV:16049000-16049080 6.53e-03 80 chrIV:12684486-12684566 5.76e-01 80 chrIV:3351517-3351597 1.20e-03 5_[+3(1.26e-05)]_6_[+1(2.92e-05)]_\ 53 chrX:6813047-6813127 8.59e-01 80 chrI:2571232-2571312 5.98e-01 80 chrII:1500575-1500655 8.85e-01 80 chrII:8587955-8588035 3.51e-03 46_[+3(1.26e-05)]_26 chrII:10990734-10990814 5.11e-01 80 chrX:2926079-2926159 1.14e-01 80 chrI:6341880-6341960 3.10e-01 80 chrX:12086463-12086543 8.53e-01 80 chrII:9982639-9982719 1.95e-01 80 chrV:4193270-4193350 5.92e-01 80 chrI:636781-636861 1.04e-02 34_[+5(8.91e-05)]_38 chrIV:6294177-6294257 6.18e-01 80 chrIV:6887861-6887941 8.26e-03 67_[+1(1.36e-05)]_5 chrX:5519651-5519731 1.00e-01 49_[+4(2.09e-05)]_23 chrIII:4208406-4208486 9.32e-01 80 chrII:11567395-11567475 2.35e-02 1_[+5(3.58e-05)]_71 chrV:9225788-9225868 6.40e-01 80 chrV:14695488-14695568 4.50e-01 80 chrIV:13289517-13289597 6.12e-01 80 chrIV:12584309-12584389 1.00e-01 80 chrX:7654131-7654211 2.40e-01 80 chrIII:3311271-3311351 3.05e-02 80 chrII:11025724-11025804 9.07e-01 80 chrI:14073013-14073093 9.35e-01 80 chrI:275779-275859 7.23e-04 44_[+1(1.36e-05)]_28 chrIII:4515339-4515419 6.87e-04 1_[+1(1.36e-05)]_51_[+3(1.26e-05)]_\ 12 chrV:16746739-16746819 6.29e-01 80 chrI:11222149-11222229 5.55e-01 80 chrX:15555467-15555547 5.30e-01 80 chrX:6807570-6807650 3.25e-01 80 chrV:9270568-9270648 6.48e-03 59_[+2(1.68e-05)]_13 chrI:4958852-4958932 6.77e-01 80 chrIV:5970635-5970715 4.77e-02 7_[+3(2.70e-05)]_65 chrII:147637-147717 4.91e-01 80 chrV:6485285-6485365 3.08e-01 80 chrV:18589696-18589776 3.27e-04 23_[+3(1.26e-05)]_13_[+1(7.05e-05)]_\ 28 chrI:2697154-2697234 2.99e-03 66_[+5(7.87e-05)]_6 chrI:3338408-3338488 3.00e-03 28_[+1(7.05e-05)]_44 chrI:9940982-9941062 1.76e-01 80 chrII:13294750-13294830 1.44e-01 22_[+2(1.68e-05)]_50 chrII:12374188-12374268 7.71e-01 80 chrII:3975139-3975219 7.39e-01 80 chrI:7224687-7224767 5.54e-01 80 chrX:9213674-9213754 6.51e-02 80 chrIV:9777702-9777782 9.44e-01 80 chrIV:175735-175815 9.62e-01 80 chrX:12091755-12091835 8.15e-01 80 chrX:6893122-6893202 2.42e-02 80 chrX:5129593-5129673 3.87e-01 80 chrII:2992506-2992586 4.63e-01 80 chrI:9516118-9516198 7.26e-01 80 chrV:15771113-15771193 6.89e-02 80 chrV:8797091-8797171 6.90e-01 80 chrIII:8461446-8461526 7.74e-01 80 chrIV:4586154-4586234 7.47e-01 80 chrII:10369868-10369948 8.88e-01 80 chrX:10505309-10505389 1.06e-01 80 chrI:4312750-4312830 7.08e-03 80 chrI:470972-471052 4.17e-01 80 chrIV:7611586-7611666 4.33e-01 80 chrX:12184590-12184670 4.68e-02 54_[+1(8.61e-05)]_18 chrIII:8211670-8211750 8.16e-01 80 chrV:156215-156295 7.81e-01 80 chrV:15634-15714 5.59e-02 80 chrV:4357551-4357631 5.90e-01 80 chrIII:8829405-8829485 8.61e-01 80 chrX:2216794-2216874 9.06e-01 80 chrV:12649774-12649854 6.31e-01 80 chrI:5118925-5119005 4.70e-01 80 chrX:7457359-7457439 4.34e-01 80 chrV:14899777-14899857 1.89e-02 13_[+1(2.92e-05)]_59 chrX:7456004-7456084 5.89e-01 80 chrX:3351636-3351716 8.66e-04 45_[+5(1.18e-05)]_27 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************