******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-30.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:2221665-2221745 1.0000 80 chrI:13600650-13600730 1.0000 80 chrIV:1624591-1624671 1.0000 80 chrV:10084191-10084271 1.0000 80 chrI:12893251-12893331 1.0000 80 chrI:13500446-13500526 1.0000 80 chrI:13528252-13528332 1.0000 80 chrIII:3104755-3104835 1.0000 80 chrI:9837245-9837325 1.0000 80 chrIII:8242994-8243074 1.0000 80 chrV:19550453-19550533 1.0000 80 chrI:13505840-13505920 1.0000 80 chrV:9088963-9089043 1.0000 80 chrI:13533975-13534055 1.0000 80 chrI:11131534-11131614 1.0000 80 chrV:3193246-3193326 1.0000 80 chrI:11120999-11121079 1.0000 80 chrV:1805461-1805541 1.0000 80 chrII:11756949-11757029 1.0000 80 chrI:13559767-13559847 1.0000 80 chrI:12877159-12877239 1.0000 80 chrI:15023046-15023126 1.0000 80 chrIV:5657547-5657627 1.0000 80 chrI:13434506-13434586 1.0000 80 chrV:10081802-10081882 1.0000 80 chrI:10667081-10667161 1.0000 80 chrI:13475650-13475730 1.0000 80 chrII:14407931-14408011 1.0000 80 chrI:4175991-4176071 1.0000 80 chrI:13499071-13499151 1.0000 80 chrI:13588899-13588979 1.0000 80 chrV:10087290-10087370 1.0000 80 chrV:1743617-1743697 1.0000 80 chrI:13045550-13045630 1.0000 80 chrII:942769-942849 1.0000 80 chrIII:9052852-9052932 1.0000 80 chrII:13369402-13369482 1.0000 80 chrV:9091130-9091210 1.0000 80 chrI:6358560-6358640 1.0000 80 chrX:10900224-10900304 1.0000 80 chrI:2485598-2485678 1.0000 80 chrIII:3248782-3248862 1.0000 80 chrV:18990413-18990493 1.0000 80 chrI:13812449-13812529 1.0000 80 chrI:2901051-2901131 1.0000 80 chrV:18723797-18723877 1.0000 80 chrIII:9052189-9052269 1.0000 80 chrV:10055036-10055116 1.0000 80 chrIV:5656091-5656171 1.0000 80 chrI:13840066-13840146 1.0000 80 chrIV:1009637-1009717 1.0000 80 chrV:18079358-18079438 1.0000 80 chrV:18354510-18354590 1.0000 80 chrII:66428-66508 1.0000 80 chrI:7194850-7194930 1.0000 80 chrI:7494294-7494374 1.0000 80 chrV:10657167-10657247 1.0000 80 chrI:4644308-4644388 1.0000 80 chrI:11038883-11038963 1.0000 80 chrIII:4150953-4151033 1.0000 80 chrV:20713210-20713290 1.0000 80 chrI:6579919-6579999 1.0000 80 chrX:7809686-7809766 1.0000 80 chrIV:5657341-5657421 1.0000 80 chrI:7835640-7835720 1.0000 80 chrII:2832702-2832782 1.0000 80 chrIII:6375193-6375273 1.0000 80 chrI:1156148-1156228 1.0000 80 chrI:13495219-13495299 1.0000 80 chrV:9243776-9243856 1.0000 80 chrI:5375989-5376069 1.0000 80 chrIII:1558611-1558691 1.0000 80 chrIII:7499619-7499699 1.0000 80 chrI:12747480-12747560 1.0000 80 chrIII:8443763-8443843 1.0000 80 chrI:10830996-10831076 1.0000 80 chrX:17151346-17151426 1.0000 80 chrX:3650521-3650601 1.0000 80 chrII:14399765-14399845 1.0000 80 chrIV:6645996-6646076 1.0000 80 chrV:6427545-6427625 1.0000 80 chrI:13653922-13654002 1.0000 80 chrIII:10818531-10818611 1.0000 80 chrI:3162626-3162706 1.0000 80 chrV:7983775-7983855 1.0000 80 chrX:5336598-5336678 1.0000 80 chrII:9054754-9054834 1.0000 80 chrIII:11823463-11823543 1.0000 80 chrIII:96163-96243 1.0000 80 chrI:5379865-5379945 1.0000 80 chrIV:4019890-4019970 1.0000 80 chrI:10518062-10518142 1.0000 80 chrI:8392731-8392811 1.0000 80 chrII:11537511-11537591 1.0000 80 chrII:1328338-1328418 1.0000 80 chrI:12995764-12995844 1.0000 80 chrII:15232852-15232932 1.0000 80 chrIII:8085500-8085580 1.0000 80 chrV:3655502-3655582 1.0000 80 chrI:11208032-11208112 1.0000 80 chrII:411023-411103 1.0000 80 chrIII:11920471-11920551 1.0000 80 chrX:6619985-6620065 1.0000 80 chrIII:9051417-9051497 1.0000 80 chrII:24623-24703 1.0000 80 chrIII:3820283-3820363 1.0000 80 chrI:6220995-6221075 1.0000 80 chrII:7111824-7111904 1.0000 80 chrI:5127548-5127628 1.0000 80 chrI:3266071-3266151 1.0000 80 chrV:14697009-14697089 1.0000 80 chrX:1524723-1524803 1.0000 80 chrIII:12598638-12598718 1.0000 80 chrI:14647603-14647683 1.0000 80 chrIV:7654526-7654606 1.0000 80 chrI:12664984-12665064 1.0000 80 chrIV:9667318-9667398 1.0000 80 chrIII:4666947-4667027 1.0000 80 chrV:18689846-18689926 1.0000 80 chrI:9076292-9076372 1.0000 80 chrIV:16656404-16656484 1.0000 80 chrI:13659537-13659617 1.0000 80 chrX:16931452-16931532 1.0000 80 chrX:12393962-12394042 1.0000 80 chrII:7050312-7050392 1.0000 80 chrII:10798607-10798687 1.0000 80 chrIV:7909616-7909696 1.0000 80 chrII:14438190-14438270 1.0000 80 chrX:8156149-8156229 1.0000 80 chrV:13789582-13789662 1.0000 80 chrV:9690898-9690978 1.0000 80 chrIII:11063442-11063522 1.0000 80 chrI:8813434-8813514 1.0000 80 chrII:5373399-5373479 1.0000 80 chrII:6047834-6047914 1.0000 80 chrI:2097049-2097129 1.0000 80 chrV:12300382-12300462 1.0000 80 chrI:1698083-1698163 1.0000 80 chrII:4904380-4904460 1.0000 80 chrIV:2665753-2665833 1.0000 80 chrIV:14767871-14767951 1.0000 80 chrIII:1037314-1037394 1.0000 80 chrIV:6576897-6576977 1.0000 80 chrI:13626334-13626414 1.0000 80 chrIII:9443653-9443733 1.0000 80 chrV:11764524-11764604 1.0000 80 chrV:5592470-5592550 1.0000 80 chrI:13514342-13514422 1.0000 80 chrII:10169626-10169706 1.0000 80 chrI:7595681-7595761 1.0000 80 chrX:16148050-16148130 1.0000 80 chrI:10037792-10037872 1.0000 80 chrV:15766340-15766420 1.0000 80 chrIII:13466365-13466445 1.0000 80 chrII:8569505-8569585 1.0000 80 chrIV:4513655-4513735 1.0000 80 chrI:3547026-3547106 1.0000 80 chrI:4270551-4270631 1.0000 80 chrI:3147868-3147948 1.0000 80 chrII:9646271-9646351 1.0000 80 chrIII:8971772-8971852 1.0000 80 chrIII:235280-235360 1.0000 80 chrI:13470420-13470500 1.0000 80 chrII:6859054-6859134 1.0000 80 chrII:2752685-2752765 1.0000 80 chrIII:3505304-3505384 1.0000 80 chrIII:8021035-8021115 1.0000 80 chrV:14876445-14876525 1.0000 80 chrV:12191146-12191226 1.0000 80 chrIV:16995582-16995662 1.0000 80 chrI:6799618-6799698 1.0000 80 chrIV:14464213-14464293 1.0000 80 chrX:5812137-5812217 1.0000 80 chrIV:7235543-7235623 1.0000 80 chrIV:1824198-1824278 1.0000 80 chrII:3502780-3502860 1.0000 80 chrIV:11961817-11961897 1.0000 80 chrIII:4313603-4313683 1.0000 80 chrI:13756515-13756595 1.0000 80 chrI:13337258-13337338 1.0000 80 chrV:8785635-8785715 1.0000 80 chrIV:2928568-2928648 1.0000 80 chrI:6745603-6745683 1.0000 80 chrIII:7729701-7729781 1.0000 80 chrIV:15039661-15039741 1.0000 80 chrX:9999879-9999959 1.0000 80 chrX:7475202-7475282 1.0000 80 chrV:6053448-6053528 1.0000 80 chrI:7084508-7084588 1.0000 80 chrIV:10222059-10222139 1.0000 80 chrI:7861544-7861624 1.0000 80 chrI:8288816-8288896 1.0000 80 chrX:16872539-16872619 1.0000 80 chrII:9282993-9283073 1.0000 80 chrIV:2049068-2049148 1.0000 80 chrI:11578316-11578396 1.0000 80 chrII:13888503-13888583 1.0000 80 chrV:8001056-8001136 1.0000 80 chrIII:10742631-10742711 1.0000 80 chrI:10197338-10197418 1.0000 80 chrIV:2676435-2676515 1.0000 80 chrV:14012227-14012307 1.0000 80 chrIV:6790621-6790701 1.0000 80 chrV:975171-975251 1.0000 80 chrV:2694574-2694654 1.0000 80 chrIII:4004332-4004412 1.0000 80 chrIII:4171138-4171218 1.0000 80 chrX:12018089-12018169 1.0000 80 chrIII:1142961-1143041 1.0000 80 chrX:15040832-15040912 1.0000 80 chrI:2291209-2291289 1.0000 80 chrI:2876627-2876707 1.0000 80 chrIV:8782279-8782359 1.0000 80 chrV:9273613-9273693 1.0000 80 chrX:15707516-15707596 1.0000 80 chrII:14383820-14383900 1.0000 80 chrI:6091101-6091181 1.0000 80 chrIV:8891343-8891423 1.0000 80 chrX:949634-949714 1.0000 80 chrX:17030671-17030751 1.0000 80 chrIII:1601630-1601710 1.0000 80 chrI:14721555-14721635 1.0000 80 chrV:13808677-13808757 1.0000 80 chrI:9988934-9989014 1.0000 80 chrIV:5394884-5394964 1.0000 80 chrV:14415262-14415342 1.0000 80 chrI:13339065-13339145 1.0000 80 chrV:12465654-12465734 1.0000 80 chrIII:8447083-8447163 1.0000 80 chrIV:1420243-1420323 1.0000 80 chrIII:888068-888148 1.0000 80 chrI:5699083-5699163 1.0000 80 chrIV:884885-884965 1.0000 80 chrI:10807350-10807430 1.0000 80 chrII:13460791-13460871 1.0000 80 chrV:10040017-10040097 1.0000 80 chrIII:1080733-1080813 1.0000 80 chrIII:8358391-8358471 1.0000 80 chrX:2242955-2243035 1.0000 80 chrX:16930918-16930998 1.0000 80 chrIV:11026131-11026211 1.0000 80 chrX:5475330-5475410 1.0000 80 chrX:16446077-16446157 1.0000 80 chrI:3350000-3350080 1.0000 80 chrII:9716792-9716872 1.0000 80 chrI:12206618-12206698 1.0000 80 chrII:216721-216801 1.0000 80 chrV:5505223-5505303 1.0000 80 chrV:10537032-10537112 1.0000 80 chrX:14560359-14560439 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ceh-30/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-30.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.273 C 0.227 G 0.236 T 0.264 Background letter frequencies (from file dataset with add-one prior applied): A 0.273 C 0.227 G 0.236 T 0.264 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GYGTTTGC MEME-1 width = 8 sites = 50 llr = 421 E-value = 2.9e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif GYGTTTGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::1::::: pos.-specific C :6:1:::a probability G a:9:1:9: matrix T :4:89a1: bits 2.1 1.9 * * * 1.7 * *** 1.5 * * **** Relative 1.3 * * **** Entropy 1.1 *** **** (12.2 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGTTTGC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGTTTGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:8891343-8891423 22 1.25e-05 CATTTTCAGT GCGTTTGC GCTTATTCTG chrII:9282993-9283073 66 1.25e-05 CGAGGAAATA GCGTTTGC AAGAGAG chrV:8785635-8785715 13 1.25e-05 CTTCTCCCGG GCGTTTGC CTCTCCTCGG chrIV:2665753-2665833 67 1.25e-05 AGTGGCTATT GCGTTTGC TTTTGG chrII:7050312-7050392 39 1.25e-05 ACAATGGAGC GCGTTTGC ATTATTTTTT chrIV:7654526-7654606 38 1.25e-05 GCAGTGGAGC GCGTTTGC TACTGGCCAG chrV:6427545-6427625 71 1.25e-05 ACGCCATTTC GCGTTTGC CA chrI:10830996-10831076 17 1.25e-05 GAAATAGAGC GCGTTTGC TGAGGGCTTA chrI:12206618-12206698 73 2.70e-05 GTCCCCTGCG GTGTTTGC chrIV:2928568-2928648 32 2.70e-05 ATAAGCTGAC GTGTTTGC GCGCACCGCG chrI:3147868-3147948 33 2.70e-05 TGCCGTCAAA GTGTTTGC GTCCAATGCG chrV:5592470-5592550 43 2.70e-05 GTAGTTTAAA GTGTTTGC AGAAATATGC chrI:13626334-13626414 46 2.70e-05 CGTCAGCACG GTGTTTGC GTACTCTTTC chrI:1698083-1698163 37 2.70e-05 gtgtgtgtgt gtgtttgC CATTTCTCTG chrIII:11063442-11063522 31 2.70e-05 tcgcgtgacg gtgtttgc acaCACTGGC chrIV:16656404-16656484 54 2.70e-05 TGTCAGCGGT GTGTTTGC GGACTTGCAC chrIII:12598638-12598718 18 2.70e-05 CAATGCTTCG GTGTTTGC GGACTTGCTT chrI:6220995-6221075 8 2.70e-05 CGCGTGT GTGTTTGC CGCTTTGAGA chrV:7983775-7983855 26 2.70e-05 TTAGTGCGCG GTGTTTGC GGACTTGTCC chrI:13840066-13840146 23 2.70e-05 GTCAGATTTG GTGTTTGC GTACAAAGCG chrI:13434506-13434586 53 2.70e-05 ACCGAGCGCG GTGTTTGC GTACTCTGCC chrI:15023046-15023126 60 2.70e-05 TGTCGTCACG GTGTTTGC ACACATTACC chrII:216721-216801 55 3.77e-05 GCGGTAGAGC GCGCTTGC CATTTTGGCG chrI:13514342-13514422 68 3.77e-05 GCGGTGGAGC GCGCTTGC TCGAA chrIV:6576897-6576977 72 3.77e-05 GGTGACGGCG GCGCTTGC C chrI:7835640-7835720 25 3.77e-05 GTCGAATCTG GCGCTTGC GTACATGTTT chrI:13812449-13812529 30 3.77e-05 TCAATGGAGC GCGCTTGC AGTTTGCAAA chrIII:10742631-10742711 67 6.13e-05 CAATACGCGC GCGTGTGC CATGGA chrII:14399765-14399845 9 6.13e-05 GACGCGAC GCGTGTGC GGCGCTTGTT chrX:5475330-5475410 20 8.82e-05 atgtgagtgt gtgtgtgc cgctagcgta chrV:10040017-10040097 27 8.82e-05 TTGTGTGTAT GTGTGTGC TTCTATTTCT chrIII:4313603-4313683 61 8.82e-05 TTACATTGCA GCGTTTTC TCGTGGTTTC chrII:24623-24703 48 8.82e-05 GACGCGATAC GCGTTTTC AATACGAGGC chrI:6799618-6799698 66 1.03e-04 TGCACATGAT GCATTTGC GCTCTAT chrV:9690898-9690978 29 1.03e-04 GACGCTACGC GCATTTGC GTACACCGTA chrI:12995764-12995844 20 1.03e-04 TCGTGCTGGC GCATTTGC CGATCGCTTC chrI:10667081-10667161 33 1.03e-04 TGTGTGACGC GCATTTGC GGACTCGGAA chrIV:1420243-1420323 16 1.30e-04 CGAATCAATT GTGTTTTC TCAGCCACAG chrII:14383820-14383900 33 1.60e-04 TCAATAGGGC GCGATTGC ACGCAACACT chrII:2752685-2752765 55 1.60e-04 GCGGTGGGGC GCGATTGC GCGTGGCCTA chrIV:5394884-5394964 5 1.86e-04 CCAG GTGGTTGC TGACGCGTTC chrI:2291209-2291289 73 1.86e-04 CGGCACCCAA GCTTTTGC chrIII:7499619-7499699 33 1.86e-04 ACACGCCAAA GTGGTTGC TGGCGCGTTT chrI:13475650-13475730 39 1.86e-04 ATATTGCTGG GCTTTTGC ATTTGTTGAC chrIII:3248782-3248862 60 2.30e-04 GTCGGGTTTG ACGTTTGC GGACTCGAAT chrIV:2676435-2676515 31 2.56e-04 ATACGCGTCA GCGCGTGC GAGAAACGCG chrI:7595681-7595761 59 2.73e-04 TTTCTTGTGA GTGTTTGT GTGTCTCTCT chrI:8813434-8813514 64 2.73e-04 GTGTATGGGA GTGTTTGT AGCGATGAA chrIV:1009637-1009717 63 2.90e-04 CACGGGAGGA ATGTTTGC GCGTCAAATC chrIV:4513655-4513735 63 3.13e-04 GATGAAAGGC GCGCTTTC CGTGCGGAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGTTTGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:8891343-8891423 1.2e-05 21_[+1]_51 chrII:9282993-9283073 1.2e-05 65_[+1]_7 chrV:8785635-8785715 1.2e-05 12_[+1]_60 chrIV:2665753-2665833 1.2e-05 66_[+1]_6 chrII:7050312-7050392 1.2e-05 38_[+1]_34 chrIV:7654526-7654606 1.2e-05 37_[+1]_35 chrV:6427545-6427625 1.2e-05 70_[+1]_2 chrI:10830996-10831076 1.2e-05 16_[+1]_56 chrI:12206618-12206698 2.7e-05 72_[+1] chrIV:2928568-2928648 2.7e-05 31_[+1]_41 chrI:3147868-3147948 2.7e-05 32_[+1]_40 chrV:5592470-5592550 2.7e-05 42_[+1]_30 chrI:13626334-13626414 2.7e-05 45_[+1]_27 chrI:1698083-1698163 2.7e-05 36_[+1]_36 chrIII:11063442-11063522 2.7e-05 30_[+1]_42 chrIV:16656404-16656484 2.7e-05 53_[+1]_19 chrIII:12598638-12598718 2.7e-05 17_[+1]_55 chrI:6220995-6221075 2.7e-05 7_[+1]_65 chrV:7983775-7983855 2.7e-05 25_[+1]_47 chrI:13840066-13840146 2.7e-05 22_[+1]_50 chrI:13434506-13434586 2.7e-05 52_[+1]_20 chrI:15023046-15023126 2.7e-05 59_[+1]_13 chrII:216721-216801 3.8e-05 54_[+1]_18 chrI:13514342-13514422 3.8e-05 67_[+1]_5 chrIV:6576897-6576977 3.8e-05 71_[+1]_1 chrI:7835640-7835720 3.8e-05 24_[+1]_48 chrI:13812449-13812529 3.8e-05 29_[+1]_43 chrIII:10742631-10742711 6.1e-05 66_[+1]_6 chrII:14399765-14399845 6.1e-05 8_[+1]_64 chrX:5475330-5475410 8.8e-05 19_[+1]_53 chrV:10040017-10040097 8.8e-05 26_[+1]_46 chrIII:4313603-4313683 8.8e-05 60_[+1]_12 chrII:24623-24703 8.8e-05 47_[+1]_25 chrI:6799618-6799698 0.0001 65_[+1]_7 chrV:9690898-9690978 0.0001 28_[+1]_44 chrI:12995764-12995844 0.0001 19_[+1]_53 chrI:10667081-10667161 0.0001 32_[+1]_40 chrIV:1420243-1420323 0.00013 15_[+1]_57 chrII:14383820-14383900 0.00016 32_[+1]_40 chrII:2752685-2752765 0.00016 54_[+1]_18 chrIV:5394884-5394964 0.00019 4_[+1]_68 chrI:2291209-2291289 0.00019 72_[+1] chrIII:7499619-7499699 0.00019 32_[+1]_40 chrI:13475650-13475730 0.00019 38_[+1]_34 chrIII:3248782-3248862 0.00023 59_[+1]_13 chrIV:2676435-2676515 0.00026 30_[+1]_42 chrI:7595681-7595761 0.00027 58_[+1]_14 chrI:8813434-8813514 0.00027 63_[+1]_9 chrIV:1009637-1009717 0.00029 62_[+1]_10 chrIV:4513655-4513735 0.00031 62_[+1]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGTTTGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GYGTTTGC width=8 seqs=50 chrIV:8891343-8891423 ( 22) GCGTTTGC 1 chrII:9282993-9283073 ( 66) GCGTTTGC 1 chrV:8785635-8785715 ( 13) GCGTTTGC 1 chrIV:2665753-2665833 ( 67) GCGTTTGC 1 chrII:7050312-7050392 ( 39) GCGTTTGC 1 chrIV:7654526-7654606 ( 38) GCGTTTGC 1 chrV:6427545-6427625 ( 71) GCGTTTGC 1 chrI:10830996-10831076 ( 17) GCGTTTGC 1 chrI:12206618-12206698 ( 73) GTGTTTGC 1 chrIV:2928568-2928648 ( 32) GTGTTTGC 1 chrI:3147868-3147948 ( 33) GTGTTTGC 1 chrV:5592470-5592550 ( 43) GTGTTTGC 1 chrI:13626334-13626414 ( 46) GTGTTTGC 1 chrI:1698083-1698163 ( 37) GTGTTTGC 1 chrIII:11063442-11063522 ( 31) GTGTTTGC 1 chrIV:16656404-16656484 ( 54) GTGTTTGC 1 chrIII:12598638-12598718 ( 18) GTGTTTGC 1 chrI:6220995-6221075 ( 8) GTGTTTGC 1 chrV:7983775-7983855 ( 26) GTGTTTGC 1 chrI:13840066-13840146 ( 23) GTGTTTGC 1 chrI:13434506-13434586 ( 53) GTGTTTGC 1 chrI:15023046-15023126 ( 60) GTGTTTGC 1 chrII:216721-216801 ( 55) GCGCTTGC 1 chrI:13514342-13514422 ( 68) GCGCTTGC 1 chrIV:6576897-6576977 ( 72) GCGCTTGC 1 chrI:7835640-7835720 ( 25) GCGCTTGC 1 chrI:13812449-13812529 ( 30) GCGCTTGC 1 chrIII:10742631-10742711 ( 67) GCGTGTGC 1 chrII:14399765-14399845 ( 9) GCGTGTGC 1 chrX:5475330-5475410 ( 20) GTGTGTGC 1 chrV:10040017-10040097 ( 27) GTGTGTGC 1 chrIII:4313603-4313683 ( 61) GCGTTTTC 1 chrII:24623-24703 ( 48) GCGTTTTC 1 chrI:6799618-6799698 ( 66) GCATTTGC 1 chrV:9690898-9690978 ( 29) GCATTTGC 1 chrI:12995764-12995844 ( 20) GCATTTGC 1 chrI:10667081-10667161 ( 33) GCATTTGC 1 chrIV:1420243-1420323 ( 16) GTGTTTTC 1 chrII:14383820-14383900 ( 33) GCGATTGC 1 chrII:2752685-2752765 ( 55) GCGATTGC 1 chrIV:5394884-5394964 ( 5) GTGGTTGC 1 chrI:2291209-2291289 ( 73) GCTTTTGC 1 chrIII:7499619-7499699 ( 33) GTGGTTGC 1 chrI:13475650-13475730 ( 39) GCTTTTGC 1 chrIII:3248782-3248862 ( 60) ACGTTTGC 1 chrIV:2676435-2676515 ( 31) GCGCGTGC 1 chrI:7595681-7595761 ( 59) GTGTTTGT 1 chrI:8813434-8813514 ( 64) GTGTTTGT 1 chrIV:1009637-1009717 ( 63) ATGTTTGC 1 chrIV:4513655-4513735 ( 63) GCGCTTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGTTTGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.2153 E= 2.9e-019 -277 -1229 202 -1229 -1229 130 -1229 73 -177 -1229 190 -272 -277 -70 -256 156 -1229 -1229 -124 177 -1229 -1229 -1229 192 -1229 -1229 196 -172 -1229 208 -1229 -272 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGTTTGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 2.9e-019 0.040000 0.000000 0.960000 0.000000 0.000000 0.560000 0.000000 0.440000 0.080000 0.000000 0.880000 0.040000 0.040000 0.140000 0.040000 0.780000 0.000000 0.000000 0.100000 0.900000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.920000 0.080000 0.000000 0.960000 0.000000 0.040000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGTTTGC MEME-1 regular expression -------------------------------------------------------------------------------- G[CT]GTTTGC -------------------------------------------------------------------------------- Time 10.01 secs. ******************************************************************************** ******************************************************************************** MOTIF GCAAACAC MEME-2 width = 8 sites = 22 llr = 227 E-value = 9.9e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAAACAC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::a8a:a: pos.-specific C :a:1:a:a probability G a::1:::: matrix T :::::::: bits 2.1 ** * * 1.9 *** ** * 1.7 *** **** 1.5 *** **** Relative 1.3 *** **** Entropy 1.1 ******** (14.9 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCAAACAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:9716792-9716872 44 1.53e-05 GACACATTGT GCAAACAC CGTGGCGCTC chrI:6799618-6799698 35 1.53e-05 CGAGTGGTCT GCAAACAC CGCCACGCAC chrIII:8021035-8021115 59 1.53e-05 TCTGATGTAC GCAAACAC CGCCACGCGC chrV:18689846-18689926 43 1.53e-05 GAGGCAGTAC GCAAACAC CACACCTGAC chrI:12664984-12665064 47 1.53e-05 TTTAAAGTCC GCAAACAC GGCGGCGCGC chrII:7111824-7111904 11 1.53e-05 GCAAAGGTAC GCAAACAC CACTACGCGC chrIII:8085500-8085580 33 1.53e-05 ACAATTGTGT GCAAACAC TATGAGGGAT chrI:10518062-10518142 44 1.53e-05 ATACAACACC GCAAACAC CGTCACGTCA chrII:9054754-9054834 15 1.53e-05 CTTTCAGTCC gcaaacac cgtcacgcac chrV:6427545-6427625 41 1.53e-05 CGACTAGTCC GCAAACAC CGAGCCTACT chrX:17151346-17151426 30 1.53e-05 CAGACAGTGT GCAAACAC CATCACGGCA chrIII:1558611-1558691 31 1.53e-05 CAGGTGGTCC GCAAACAC CGTCACGTTA chrV:10055036-10055116 1 1.53e-05 . GCAAACAC TTCGCAGTAC chrI:2901051-2901131 42 1.53e-05 CGGAATGTGT GCAAACAC GGCGACGCGA chrI:2485598-2485678 48 1.53e-05 acgcaagtcc gcaaacac tgtcacgcca chrI:10667081-10667161 13 1.53e-05 GACAATGTAC GCAAACAC CGTGTGTGAC chrI:13434506-13434586 37 1.53e-05 GCGATTGTAC GCAAACAC CGAGCGCGGT chrV:9690898-9690978 9 2.81e-05 GCTTGTCT GCACACAC CAGACGCTAC chrX:10900224-10900304 19 2.81e-05 ACAGTTGTGT GCACACAC GGGACGCTAC chrI:13499071-13499151 23 4.13e-05 TTAGAGAGAC GCAGACAC CCAAAGACCA chrI:13505840-13505920 62 4.13e-05 TGAGGAGAGT GCAGACAC ATCGAAGGAC chrII:24623-24703 64 5.62e-05 TCAATACGAG GCAAACTC AAATTTATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:9716792-9716872 1.5e-05 43_[+2]_29 chrI:6799618-6799698 1.5e-05 34_[+2]_38 chrIII:8021035-8021115 1.5e-05 58_[+2]_14 chrV:18689846-18689926 1.5e-05 42_[+2]_30 chrI:12664984-12665064 1.5e-05 46_[+2]_26 chrII:7111824-7111904 1.5e-05 10_[+2]_62 chrIII:8085500-8085580 1.5e-05 32_[+2]_40 chrI:10518062-10518142 1.5e-05 43_[+2]_29 chrII:9054754-9054834 1.5e-05 14_[+2]_58 chrV:6427545-6427625 1.5e-05 40_[+2]_32 chrX:17151346-17151426 1.5e-05 29_[+2]_43 chrIII:1558611-1558691 1.5e-05 30_[+2]_42 chrV:10055036-10055116 1.5e-05 [+2]_72 chrI:2901051-2901131 1.5e-05 41_[+2]_31 chrI:2485598-2485678 1.5e-05 47_[+2]_25 chrI:10667081-10667161 1.5e-05 12_[+2]_60 chrI:13434506-13434586 1.5e-05 36_[+2]_36 chrV:9690898-9690978 2.8e-05 8_[+2]_64 chrX:10900224-10900304 2.8e-05 18_[+2]_54 chrI:13499071-13499151 4.1e-05 22_[+2]_50 chrI:13505840-13505920 4.1e-05 61_[+2]_11 chrII:24623-24703 5.6e-05 63_[+2]_9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAAACAC width=8 seqs=22 chrII:9716792-9716872 ( 44) GCAAACAC 1 chrI:6799618-6799698 ( 35) GCAAACAC 1 chrIII:8021035-8021115 ( 59) GCAAACAC 1 chrV:18689846-18689926 ( 43) GCAAACAC 1 chrI:12664984-12665064 ( 47) GCAAACAC 1 chrII:7111824-7111904 ( 11) GCAAACAC 1 chrIII:8085500-8085580 ( 33) GCAAACAC 1 chrI:10518062-10518142 ( 44) GCAAACAC 1 chrII:9054754-9054834 ( 15) GCAAACAC 1 chrV:6427545-6427625 ( 41) GCAAACAC 1 chrX:17151346-17151426 ( 30) GCAAACAC 1 chrIII:1558611-1558691 ( 31) GCAAACAC 1 chrV:10055036-10055116 ( 1) GCAAACAC 1 chrI:2901051-2901131 ( 42) GCAAACAC 1 chrI:2485598-2485678 ( 48) GCAAACAC 1 chrI:10667081-10667161 ( 13) GCAAACAC 1 chrI:13434506-13434586 ( 37) GCAAACAC 1 chrV:9690898-9690978 ( 9) GCACACAC 1 chrX:10900224-10900304 ( 19) GCACACAC 1 chrI:13499071-13499151 ( 23) GCAGACAC 1 chrI:13505840-13505920 ( 62) GCAGACAC 1 chrII:24623-24703 ( 64) GCAAACTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0499 E= 9.9e-013 -1110 -1110 208 -1110 -1110 214 -1110 -1110 187 -1110 -1110 -1110 158 -132 -138 -1110 187 -1110 -1110 -1110 -1110 214 -1110 -1110 181 -1110 -1110 -254 -1110 214 -1110 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 9.9e-013 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.818182 0.090909 0.090909 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.954545 0.000000 0.000000 0.045455 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAC MEME-2 regular expression -------------------------------------------------------------------------------- GCAAACAC -------------------------------------------------------------------------------- Time 14.69 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCGTCT MEME-3 width = 8 sites = 18 llr = 188 E-value = 1.2e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::1::: pos.-specific C a::9::91 probability G ::a19::: matrix T :a:::a19 bits 2.1 * * 1.9 **** * 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (15.1 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGCGTCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:884885-884965 41 1.20e-05 TTAGGGTTCT CTGCGTCT CCACAGCAGG chrV:12465654-12465734 22 1.20e-05 CTTTCACTAT CTGCGTCT ATGTACTCTA chrV:8785635-8785715 60 1.20e-05 CTCCATATTT CTGCGTCT CTCCGCATCT chrV:12191146-12191226 11 1.20e-05 TCACGTTTCT CTGCGTCT CTTCGTCTCA chrI:13514342-13514422 33 1.20e-05 CGTCAACTCT CTGCGTCT CTACTCTCTA chrV:5592470-5592550 61 1.20e-05 AGAAATATGC CTGCGTCT CTTCAGCGAA chrIV:14767871-14767951 16 1.20e-05 CTTGCATACT CTGCGTCT CGTCTTTTTG chrV:13789582-13789662 11 1.20e-05 ATCTTTTTGT CTGCGTCT CGACGATACA chrI:5379865-5379945 52 1.20e-05 GTTTGTTTGT CTGCGTCT CTTCCTCTTC chrV:20713210-20713290 44 1.20e-05 GTTATTGTCT CTGCGTCT ATAGGATTAG chrI:12877159-12877239 62 1.20e-05 CGCACAGTGT CTGCGTCT CTCTCATTCC chrI:11131534-11131614 38 1.20e-05 TCCCGCACAC CTGCGTCT CTCACTCTCT chrI:13533975-13534055 64 1.20e-05 TATGACCTCT CTGCGTCT CTCCAAACT chrI:13528252-13528332 10 1.20e-05 TTTTGCTGT CTGCGTCT CTTACTCTCT chrI:12206618-12206698 59 2.23e-05 AATATCGCGC CTGCGTCC CCTGCGGTGT chrX:5336598-5336678 50 3.48e-05 GCAAAAGATT CTGGGTCT CCGCGAAGCG chrX:9999879-9999959 21 6.26e-05 CAGCGGGCAT CTGCATCT GCGCGCGAGT chrI:1698083-1698163 52 6.26e-05 tgCCATTTCT CTGCGTTT CCGTCGCACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:884885-884965 1.2e-05 40_[+3]_32 chrV:12465654-12465734 1.2e-05 21_[+3]_51 chrV:8785635-8785715 1.2e-05 59_[+3]_13 chrV:12191146-12191226 1.2e-05 10_[+3]_62 chrI:13514342-13514422 1.2e-05 32_[+3]_40 chrV:5592470-5592550 1.2e-05 60_[+3]_12 chrIV:14767871-14767951 1.2e-05 15_[+3]_57 chrV:13789582-13789662 1.2e-05 10_[+3]_62 chrI:5379865-5379945 1.2e-05 51_[+3]_21 chrV:20713210-20713290 1.2e-05 43_[+3]_29 chrI:12877159-12877239 1.2e-05 61_[+3]_11 chrI:11131534-11131614 1.2e-05 37_[+3]_35 chrI:13533975-13534055 1.2e-05 63_[+3]_9 chrI:13528252-13528332 1.2e-05 9_[+3]_63 chrI:12206618-12206698 2.2e-05 58_[+3]_14 chrX:5336598-5336678 3.5e-05 49_[+3]_23 chrX:9999879-9999959 6.3e-05 20_[+3]_52 chrI:1698083-1698163 6.3e-05 51_[+3]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCGTCT width=8 seqs=18 chrIV:884885-884965 ( 41) CTGCGTCT 1 chrV:12465654-12465734 ( 22) CTGCGTCT 1 chrV:8785635-8785715 ( 60) CTGCGTCT 1 chrV:12191146-12191226 ( 11) CTGCGTCT 1 chrI:13514342-13514422 ( 33) CTGCGTCT 1 chrV:5592470-5592550 ( 61) CTGCGTCT 1 chrIV:14767871-14767951 ( 16) CTGCGTCT 1 chrV:13789582-13789662 ( 11) CTGCGTCT 1 chrI:5379865-5379945 ( 52) CTGCGTCT 1 chrV:20713210-20713290 ( 44) CTGCGTCT 1 chrI:12877159-12877239 ( 62) CTGCGTCT 1 chrI:11131534-11131614 ( 38) CTGCGTCT 1 chrI:13533975-13534055 ( 64) CTGCGTCT 1 chrI:13528252-13528332 ( 10) CTGCGTCT 1 chrI:12206618-12206698 ( 59) CTGCGTCC 1 chrX:5336598-5336678 ( 50) CTGGGTCT 1 chrX:9999879-9999959 ( 21) CTGCATCT 1 chrI:1698083-1698163 ( 52) CTGCGTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8329 E= 1.2e-008 -1081 214 -1081 -1081 -1081 -1081 -1081 192 -1081 -1081 208 -1081 -1081 206 -208 -1081 -229 -1081 200 -1081 -1081 -1081 -1081 192 -1081 206 -1081 -225 -1081 -203 -1081 184 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 1.2e-008 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.944444 0.055556 0.000000 0.055556 0.000000 0.944444 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.944444 0.000000 0.055556 0.000000 0.055556 0.000000 0.944444 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-3 regular expression -------------------------------------------------------------------------------- CTGCGTCT -------------------------------------------------------------------------------- Time 18.26 secs. ******************************************************************************** ******************************************************************************** MOTIF GCKGGCGC MEME-4 width = 8 sites = 26 llr = 233 E-value = 8.7e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCKGGCGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::3::: pos.-specific C :9:11a:a probability G a:477:a: matrix T :162:::: bits 2.1 * *** 1.9 * *** 1.7 ** *** 1.5 ** *** Relative 1.3 ** *** Entropy 1.1 *** *** (12.9 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCTGGCGC consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGGCGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:6091101-6091181 23 9.58e-06 CCAACGACTT GCTGGCGC ACTTCGCATT chrIII:1142961-1143041 34 9.58e-06 GAGTGGGGTT GCTGGCGC AATACTCGAT chrIII:4004332-4004412 56 9.58e-06 CCGTGCAGCA GCTGGCGC AATTCTCGAC chrI:13756515-13756595 39 9.58e-06 ACAGAGACTT GCTGGCGC AACACGTGAT chrV:15766340-15766420 67 9.58e-06 TTCCAGTTTT GCTGGCGC ATATCT chrII:411023-411103 39 9.58e-06 AAGGGAGACT GCTGGCGC ATTTCTTGAT chrI:12995764-12995844 45 9.58e-06 TTCCAAAAAG GCTGGCGC ACTTCTCGTG chrIV:2928568-2928648 47 1.81e-05 TGCGCGCACC GCGGGCGC GTCAGCACTC chrI:4270551-4270631 28 2.92e-05 AGCGACTATT GCTGACGC CTTTCCCTTT chrII:6047834-6047914 24 2.92e-05 TTTCGCGATG GCTGACGC ATTCTTCGTT chrI:3266071-3266151 27 2.92e-05 CATGGGCAGT GCTGACGC GTTTCGCACC chrIII:7499619-7499699 61 2.92e-05 CATCATAATT GCTGACGC ATTGTCAGTG chrV:9243776-9243856 17 2.92e-05 ATAGAAGACT GCTGACGC GTTTTTCGTG chrX:7475202-7475282 43 4.98e-05 GGACGTGTGC GCGGACGC GTCACTTATG chrI:1156148-1156228 55 4.98e-05 CTACGGTTTC GCTTGCGC CTTTAAATAC chrI:10197338-10197418 12 6.86e-05 AGAGAGAGGG GCGTGCGC GCTTTTTCTA chrII:2832702-2832782 16 6.86e-05 CGCCCATCCC GCGTGCGC GTCACCTGTT chrII:66428-66508 19 6.86e-05 CTTACTTCCC GCGTGCGC GCTCACTCTT chrV:10657167-10657247 15 7.79e-05 GTTTTTGAAG GCTGCCGC GTATAAGACA chrIV:1420243-1420323 67 8.61e-05 GCAGTGAAGC GCGCGCGC ACGCGA chrI:14721555-14721635 66 8.61e-05 TTTGCAATGC GCGCGCGC GGTTTTC chrIII:235280-235360 62 8.61e-05 CGAGGAGAGT GCGCGCGC CAGAGGACGA chrX:12018089-12018169 60 1.07e-04 TCGCTAGGCC GCGGCCGC AGGTCTGCAA chrIV:5394884-5394964 32 1.18e-04 CTTTGATCGC GTTGGCGC ACTCTCGGTG chrI:8392731-8392811 69 1.18e-04 TGCCGTGAGT GTTGGCGC ATAT chrI:15023046-15023126 38 1.40e-04 AATTTTCACC GCGTACGC AATGTGTCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGGCGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:6091101-6091181 9.6e-06 22_[+4]_50 chrIII:1142961-1143041 9.6e-06 33_[+4]_39 chrIII:4004332-4004412 9.6e-06 55_[+4]_17 chrI:13756515-13756595 9.6e-06 38_[+4]_34 chrV:15766340-15766420 9.6e-06 66_[+4]_6 chrII:411023-411103 9.6e-06 38_[+4]_34 chrI:12995764-12995844 9.6e-06 44_[+4]_28 chrIV:2928568-2928648 1.8e-05 46_[+4]_26 chrI:4270551-4270631 2.9e-05 27_[+4]_45 chrII:6047834-6047914 2.9e-05 23_[+4]_49 chrI:3266071-3266151 2.9e-05 26_[+4]_46 chrIII:7499619-7499699 2.9e-05 60_[+4]_12 chrV:9243776-9243856 2.9e-05 16_[+4]_56 chrX:7475202-7475282 5e-05 42_[+4]_30 chrI:1156148-1156228 5e-05 54_[+4]_18 chrI:10197338-10197418 6.9e-05 11_[+4]_61 chrII:2832702-2832782 6.9e-05 15_[+4]_57 chrII:66428-66508 6.9e-05 18_[+4]_54 chrV:10657167-10657247 7.8e-05 14_[+4]_58 chrIV:1420243-1420323 8.6e-05 66_[+4]_6 chrI:14721555-14721635 8.6e-05 65_[+4]_7 chrIII:235280-235360 8.6e-05 61_[+4]_11 chrX:12018089-12018169 0.00011 59_[+4]_13 chrIV:5394884-5394964 0.00012 31_[+4]_41 chrI:8392731-8392811 0.00012 68_[+4]_4 chrI:15023046-15023126 0.00014 37_[+4]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGGCGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCKGGCGC width=8 seqs=26 chrI:6091101-6091181 ( 23) GCTGGCGC 1 chrIII:1142961-1143041 ( 34) GCTGGCGC 1 chrIII:4004332-4004412 ( 56) GCTGGCGC 1 chrI:13756515-13756595 ( 39) GCTGGCGC 1 chrV:15766340-15766420 ( 67) GCTGGCGC 1 chrII:411023-411103 ( 39) GCTGGCGC 1 chrI:12995764-12995844 ( 45) GCTGGCGC 1 chrIV:2928568-2928648 ( 47) GCGGGCGC 1 chrI:4270551-4270631 ( 28) GCTGACGC 1 chrII:6047834-6047914 ( 24) GCTGACGC 1 chrI:3266071-3266151 ( 27) GCTGACGC 1 chrIII:7499619-7499699 ( 61) GCTGACGC 1 chrV:9243776-9243856 ( 17) GCTGACGC 1 chrX:7475202-7475282 ( 43) GCGGACGC 1 chrI:1156148-1156228 ( 55) GCTTGCGC 1 chrI:10197338-10197418 ( 12) GCGTGCGC 1 chrII:2832702-2832782 ( 16) GCGTGCGC 1 chrII:66428-66508 ( 19) GCGTGCGC 1 chrV:10657167-10657247 ( 15) GCTGCCGC 1 chrIV:1420243-1420323 ( 67) GCGCGCGC 1 chrI:14721555-14721635 ( 66) GCGCGCGC 1 chrIII:235280-235360 ( 62) GCGCGCGC 1 chrX:12018089-12018169 ( 60) GCGGCCGC 1 chrIV:5394884-5394964 ( 32) GTTGGCGC 1 chrI:8392731-8392811 ( 69) GTTGGCGC 1 chrI:15023046-15023126 ( 38) GCGTACGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGGCGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.6186 E= 8.7e-003 -1134 -1134 208 -1134 -1134 202 -1134 -178 -1134 -1134 70 122 -1134 -97 155 -46 -2 -156 147 -1134 -1134 214 -1134 -1134 -1134 -1134 208 -1134 -1134 214 -1134 -1134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGGCGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 8.7e-003 0.000000 0.000000 1.000000 0.000000 0.000000 0.923077 0.000000 0.076923 0.000000 0.000000 0.384615 0.615385 0.000000 0.115385 0.692308 0.192308 0.269231 0.076923 0.653846 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCKGGCGC MEME-4 regular expression -------------------------------------------------------------------------------- GC[TG]G[GA]CGC -------------------------------------------------------------------------------- Time 21.85 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGYCARC MEME-5 width = 8 sites = 15 llr = 153 E-value = 4.0e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGYCARC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::a3: pos.-specific C :a:7a::a probability G a:a:::7: matrix T :::3:::: bits 2.1 *** * * 1.9 *** ** * 1.7 *** ** * 1.5 *** ** * Relative 1.3 *** ** * Entropy 1.1 ******** (14.7 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGCCAGC consensus T A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGYCARC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:5505223-5505303 1 9.53e-06 . GCGCCAGC ATCCAATAAC chrIV:2676435-2676515 46 9.53e-06 TGCGAGAAAC GCGCCAGC ACCGTACCTT chrI:13756515-13756595 67 9.53e-06 CACTTGAATC GCGCCAGC AGTTCC chrIV:4513655-4513735 24 9.53e-06 GTCGAGAAGT GCGCCAGC GTCGGGAAAT chrIII:1037314-1037394 48 9.53e-06 ATCGAGACAC GCGCCAGC AAAATTTCCT chrX:12393962-12394042 69 9.53e-06 CACGAGAAAT GCGCCAGC AATC chrV:18990413-18990493 9 9.53e-06 CGAGAAAT GCGCCAGC GCACTGGAGA chrV:10537032-10537112 42 2.06e-05 CACAAAAAGC GCGTCAGC AAGCGATAGT chrIV:15039661-15039741 70 2.06e-05 CACGAGAAAC GCGTCAGC AAC chrII:5373399-5373479 14 2.06e-05 CGCGCAAAGT GCGTCAGC TGAGTGCCGA chrI:6091101-6091181 10 3.16e-05 GCGAGAATT GCGCCAAC GACTTGCTGG chrII:14383820-14383900 6 3.16e-05 CCTTC GCGCCAAC TTCACATTAT chrIII:8971772-8971852 53 3.16e-05 TACACGAAAC GCGCCAAC ATTCGCCACT chrI:13514342-13514422 22 4.44e-05 CACGGGAAAT GCGTCAAC TCTCTGCGTC chrI:3266071-3266151 10 4.44e-05 AACCGATTT GCGTCAAC ATGGGCAGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGYCARC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:5505223-5505303 9.5e-06 [+5]_72 chrIV:2676435-2676515 9.5e-06 45_[+5]_27 chrI:13756515-13756595 9.5e-06 66_[+5]_6 chrIV:4513655-4513735 9.5e-06 23_[+5]_49 chrIII:1037314-1037394 9.5e-06 47_[+5]_25 chrX:12393962-12394042 9.5e-06 68_[+5]_4 chrV:18990413-18990493 9.5e-06 8_[+5]_64 chrV:10537032-10537112 2.1e-05 41_[+5]_31 chrIV:15039661-15039741 2.1e-05 69_[+5]_3 chrII:5373399-5373479 2.1e-05 13_[+5]_59 chrI:6091101-6091181 3.2e-05 9_[+5]_63 chrII:14383820-14383900 3.2e-05 5_[+5]_67 chrIII:8971772-8971852 3.2e-05 52_[+5]_20 chrI:13514342-13514422 4.4e-05 21_[+5]_51 chrI:3266071-3266151 4.4e-05 9_[+5]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGYCARC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGYCARC width=8 seqs=15 chrV:5505223-5505303 ( 1) GCGCCAGC 1 chrIV:2676435-2676515 ( 46) GCGCCAGC 1 chrI:13756515-13756595 ( 67) GCGCCAGC 1 chrIV:4513655-4513735 ( 24) GCGCCAGC 1 chrIII:1037314-1037394 ( 48) GCGCCAGC 1 chrX:12393962-12394042 ( 69) GCGCCAGC 1 chrV:18990413-18990493 ( 9) GCGCCAGC 1 chrV:10537032-10537112 ( 42) GCGTCAGC 1 chrIV:15039661-15039741 ( 70) GCGTCAGC 1 chrII:5373399-5373479 ( 14) GCGTCAGC 1 chrI:6091101-6091181 ( 10) GCGCCAAC 1 chrII:14383820-14383900 ( 6) GCGCCAAC 1 chrIII:8971772-8971852 ( 53) GCGCCAAC 1 chrI:13514342-13514422 ( 22) GCGTCAAC 1 chrI:3266071-3266151 ( 10) GCGTCAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGYCARC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.5229 E= 4.0e-002 -1055 -1055 208 -1055 -1055 214 -1055 -1055 -1055 -1055 208 -1055 -1055 155 -1055 33 -1055 214 -1055 -1055 187 -1055 -1055 -1055 29 -1055 150 -1055 -1055 214 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGYCARC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 4.0e-002 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGYCARC MEME-5 regular expression -------------------------------------------------------------------------------- GCG[CT]CA[GA]C -------------------------------------------------------------------------------- Time 25.30 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:2221665-2221745 1.00e+00 80 chrI:13600650-13600730 8.99e-01 80 chrIV:1624591-1624671 5.25e-01 80 chrV:10084191-10084271 6.49e-01 80 chrI:12893251-12893331 9.99e-01 80 chrI:13500446-13500526 5.92e-01 80 chrI:13528252-13528332 4.44e-02 9_[+3(1.20e-05)]_63 chrIII:3104755-3104835 9.95e-01 80 chrI:9837245-9837325 8.82e-01 80 chrIII:8242994-8243074 1.28e-02 80 chrV:19550453-19550533 8.93e-01 80 chrI:13505840-13505920 1.26e-01 61_[+2(4.13e-05)]_11 chrV:9088963-9089043 8.46e-01 80 chrI:13533975-13534055 6.23e-02 63_[+3(1.20e-05)]_9 chrI:11131534-11131614 1.96e-03 37_[+3(1.20e-05)]_35 chrV:3193246-3193326 4.30e-01 80 chrI:11120999-11121079 6.42e-01 80 chrV:1805461-1805541 9.71e-01 80 chrII:11756949-11757029 6.37e-01 80 chrI:13559767-13559847 7.26e-02 64_[+2(8.13e-05)]_8 chrI:12877159-12877239 9.11e-03 10_[+3(1.20e-05)]_43_[+3(1.20e-05)]_\ 11 chrI:15023046-15023126 4.14e-04 59_[+1(2.70e-05)]_13 chrIV:5657547-5657627 2.38e-01 80 chrI:13434506-13434586 1.86e-04 36_[+2(1.53e-05)]_8_[+1(2.70e-05)]_\ 20 chrV:10081802-10081882 6.80e-01 80 chrI:10667081-10667161 7.76e-04 12_[+2(1.53e-05)]_60 chrI:13475650-13475730 1.07e-01 80 chrII:14407931-14408011 1.46e-01 80 chrI:4175991-4176071 6.14e-01 80 chrI:13499071-13499151 1.34e-01 22_[+2(4.13e-05)]_50 chrI:13588899-13588979 4.11e-01 80 chrV:10087290-10087370 4.44e-01 80 chrV:1743617-1743697 8.01e-01 80 chrI:13045550-13045630 9.40e-01 80 chrII:942769-942849 6.68e-01 80 chrIII:9052852-9052932 1.00e+00 80 chrII:13369402-13369482 1.57e-01 42_[+2(9.61e-05)]_30 chrV:9091130-9091210 6.49e-01 80 chrI:6358560-6358640 5.04e-02 80 chrX:10900224-10900304 6.10e-02 18_[+2(2.81e-05)]_54 chrI:2485598-2485678 6.74e-02 47_[+2(1.53e-05)]_25 chrIII:3248782-3248862 2.42e-02 80 chrV:18990413-18990493 3.94e-03 8_[+5(9.53e-06)]_64 chrI:13812449-13812529 6.48e-03 29_[+1(3.77e-05)]_43 chrI:2901051-2901131 5.12e-03 41_[+2(1.53e-05)]_31 chrV:18723797-18723877 2.91e-01 80 chrIII:9052189-9052269 6.43e-01 80 chrV:10055036-10055116 1.19e-01 [+2(1.53e-05)]_72 chrIV:5656091-5656171 7.25e-01 80 chrI:13840066-13840146 2.03e-03 22_[+1(2.70e-05)]_50 chrIV:1009637-1009717 2.10e-03 80 chrV:18079358-18079438 4.62e-01 80 chrV:18354510-18354590 8.00e-01 80 chrII:66428-66508 4.80e-03 18_[+4(6.86e-05)]_54 chrI:7194850-7194930 9.61e-01 80 chrI:7494294-7494374 1.40e-01 80 chrV:10657167-10657247 1.93e-02 14_[+4(7.79e-05)]_58 chrI:4644308-4644388 2.64e-01 80 chrI:11038883-11038963 3.63e-01 80 chrIII:4150953-4151033 8.65e-02 80 chrV:20713210-20713290 3.81e-03 43_[+3(1.20e-05)]_29 chrI:6579919-6579999 9.77e-01 80 chrX:7809686-7809766 4.89e-01 80 chrIV:5657341-5657421 8.00e-01 80 chrI:7835640-7835720 7.37e-03 24_[+1(3.77e-05)]_48 chrII:2832702-2832782 6.33e-03 15_[+4(6.86e-05)]_57 chrIII:6375193-6375273 2.69e-01 80 chrI:1156148-1156228 3.48e-02 54_[+4(4.98e-05)]_18 chrI:13495219-13495299 8.14e-01 80 chrV:9243776-9243856 9.55e-03 16_[+4(2.92e-05)]_56 chrI:5375989-5376069 9.04e-02 80 chrIII:1558611-1558691 3.51e-02 30_[+2(1.53e-05)]_42 chrIII:7499619-7499699 2.22e-04 38_[+4(9.58e-06)]_14_[+4(2.92e-05)]_\ 12 chrI:12747480-12747560 9.88e-01 80 chrIII:8443763-8443843 4.51e-01 80 chrI:10830996-10831076 4.47e-02 16_[+1(1.25e-05)]_56 chrX:17151346-17151426 1.39e-02 29_[+2(1.53e-05)]_43 chrX:3650521-3650601 3.11e-02 27_[+2(9.61e-05)]_45 chrII:14399765-14399845 2.30e-03 8_[+1(6.13e-05)]_64 chrIV:6645996-6646076 2.00e-01 80 chrV:6427545-6427625 2.47e-04 40_[+2(1.53e-05)]_22_[+1(1.25e-05)]_\ 2 chrI:13653922-13654002 3.85e-01 80 chrIII:10818531-10818611 1.50e-01 80 chrI:3162626-3162706 1.99e-01 80 chrV:7983775-7983855 6.10e-02 25_[+1(2.70e-05)]_47 chrX:5336598-5336678 1.03e-03 30_[+2(6.85e-05)]_11_[+3(3.48e-05)]_\ 23 chrII:9054754-9054834 3.42e-02 14_[+2(1.53e-05)]_40_[+2(4.13e-05)]_\ 10 chrIII:11823463-11823543 3.21e-02 80 chrIII:96163-96243 9.84e-01 80 chrI:5379865-5379945 5.45e-02 51_[+3(1.20e-05)]_21 chrIV:4019890-4019970 1.68e-01 80 chrI:10518062-10518142 8.41e-02 43_[+2(1.53e-05)]_29 chrI:8392731-8392811 5.45e-02 80 chrII:11537511-11537591 8.28e-01 80 chrII:1328338-1328418 8.14e-01 80 chrI:12995764-12995844 3.37e-03 13_[+4(9.58e-06)]_23_[+4(9.58e-06)]_\ 28 chrII:15232852-15232932 1.32e-01 80 chrIII:8085500-8085580 5.85e-02 32_[+2(1.53e-05)]_40 chrV:3655502-3655582 7.95e-01 80 chrI:11208032-11208112 8.50e-01 80 chrII:411023-411103 6.47e-03 17_[+4(4.98e-05)]_13_[+4(9.58e-06)]_\ 34 chrIII:11920471-11920551 4.44e-01 80 chrX:6619985-6620065 8.18e-01 80 chrIII:9051417-9051497 6.79e-01 80 chrII:24623-24703 9.39e-04 47_[+1(8.82e-05)]_8_[+2(5.62e-05)]_\ 9 chrIII:3820283-3820363 9.21e-01 80 chrI:6220995-6221075 4.24e-02 7_[+1(2.70e-05)]_65 chrII:7111824-7111904 4.59e-03 10_[+2(1.53e-05)]_62 chrI:5127548-5127628 1.49e-01 80 chrI:3266071-3266151 5.30e-04 9_[+5(4.44e-05)]_9_[+4(2.92e-05)]_\ 46 chrV:14697009-14697089 2.99e-01 80 chrX:1524723-1524803 7.42e-01 80 chrIII:12598638-12598718 6.43e-02 17_[+1(2.70e-05)]_55 chrI:14647603-14647683 2.63e-01 80 chrIV:7654526-7654606 7.80e-03 37_[+1(1.25e-05)]_35 chrI:12664984-12665064 7.68e-05 46_[+2(1.53e-05)]_26 chrIV:9667318-9667398 9.69e-01 80 chrIII:4666947-4667027 6.65e-01 80 chrV:18689846-18689926 2.24e-02 42_[+2(1.53e-05)]_30 chrI:9076292-9076372 6.78e-02 80 chrIV:16656404-16656484 2.52e-02 53_[+1(2.70e-05)]_19 chrI:13659537-13659617 6.90e-01 80 chrX:16931452-16931532 7.91e-01 80 chrX:12393962-12394042 9.19e-03 68_[+5(9.53e-06)]_4 chrII:7050312-7050392 1.25e-02 38_[+1(1.25e-05)]_34 chrII:10798607-10798687 3.91e-01 80 chrIV:7909616-7909696 7.21e-02 80 chrII:14438190-14438270 9.76e-01 80 chrX:8156149-8156229 1.31e-01 80 chrV:13789582-13789662 2.60e-02 10_[+3(1.20e-05)]_62 chrV:9690898-9690978 5.87e-04 8_[+2(2.81e-05)]_64 chrIII:11063442-11063522 1.94e-05 30_[+1(2.70e-05)]_42 chrI:8813434-8813514 1.85e-01 80 chrII:5373399-5373479 6.77e-03 13_[+5(2.06e-05)]_59 chrII:6047834-6047914 5.45e-03 23_[+4(2.92e-05)]_49 chrI:2097049-2097129 6.65e-01 80 chrV:12300382-12300462 9.81e-01 80 chrI:1698083-1698163 2.96e-03 36_[+1(2.70e-05)]_7_[+3(6.26e-05)]_\ 21 chrII:4904380-4904460 5.09e-01 80 chrIV:2665753-2665833 9.29e-03 66_[+1(1.25e-05)]_6 chrIV:14767871-14767951 2.01e-04 15_[+3(1.20e-05)]_57 chrIII:1037314-1037394 2.00e-02 47_[+5(9.53e-06)]_25 chrIV:6576897-6576977 9.52e-03 71_[+1(3.77e-05)]_1 chrI:13626334-13626414 5.11e-03 45_[+1(2.70e-05)]_27 chrIII:9443653-9443733 5.77e-01 80 chrV:11764524-11764604 8.85e-01 80 chrV:5592470-5592550 5.08e-05 42_[+1(2.70e-05)]_10_[+3(1.20e-05)]_\ 12 chrI:13514342-13514422 4.42e-06 21_[+5(4.44e-05)]_3_[+3(1.20e-05)]_\ 27_[+1(3.77e-05)]_5 chrII:10169626-10169706 5.55e-01 80 chrI:7595681-7595761 1.21e-01 80 chrX:16148050-16148130 5.37e-01 80 chrI:10037792-10037872 2.34e-01 80 chrV:15766340-15766420 5.21e-03 46_[+4(9.58e-06)]_12_[+4(9.58e-06)]_\ 6 chrIII:13466365-13466445 8.47e-03 80 chrII:8569505-8569585 2.96e-02 80 chrIV:4513655-4513735 1.89e-03 23_[+5(9.53e-06)]_49 chrI:3547026-3547106 9.83e-02 80 chrI:4270551-4270631 1.02e-03 27_[+4(2.92e-05)]_45 chrI:3147868-3147948 1.77e-03 32_[+1(2.70e-05)]_40 chrII:9646271-9646351 8.07e-01 80 chrIII:8971772-8971852 4.00e-02 52_[+5(3.16e-05)]_20 chrIII:235280-235360 2.41e-02 61_[+4(8.61e-05)]_11 chrI:13470420-13470500 2.13e-01 80 chrII:6859054-6859134 1.06e-01 14_[+2(2.81e-05)]_58 chrII:2752685-2752765 7.79e-02 80 chrIII:3505304-3505384 1.92e-01 80 chrIII:8021035-8021115 3.82e-03 58_[+2(1.53e-05)]_14 chrV:14876445-14876525 3.18e-01 80 chrV:12191146-12191226 2.29e-03 10_[+3(1.20e-05)]_62 chrIV:16995582-16995662 4.77e-01 80 chrI:6799618-6799698 8.17e-04 34_[+2(1.53e-05)]_38 chrIV:14464213-14464293 5.21e-02 80 chrX:5812137-5812217 3.64e-02 80 chrIV:7235543-7235623 1.03e-01 80 chrIV:1824198-1824278 6.58e-01 80 chrII:3502780-3502860 2.46e-01 80 chrIV:11961817-11961897 4.72e-01 80 chrIII:4313603-4313683 4.62e-02 60_[+1(8.82e-05)]_12 chrI:13756515-13756595 3.95e-04 38_[+4(9.58e-06)]_20_[+5(9.53e-06)]_\ 6 chrI:13337258-13337338 3.69e-01 80 chrV:8785635-8785715 4.13e-04 12_[+1(1.25e-05)]_39_[+3(1.20e-05)]_\ 13 chrIV:2928568-2928648 2.60e-06 31_[+1(2.70e-05)]_7_[+4(1.81e-05)]_\ 26 chrI:6745603-6745683 9.78e-01 80 chrIII:7729701-7729781 7.64e-01 80 chrIV:15039661-15039741 1.44e-02 69_[+5(2.06e-05)]_3 chrX:9999879-9999959 2.77e-02 20_[+3(6.26e-05)]_52 chrX:7475202-7475282 9.22e-03 42_[+4(4.98e-05)]_30 chrV:6053448-6053528 3.94e-01 80 chrI:7084508-7084588 2.07e-01 80 chrIV:10222059-10222139 7.68e-01 80 chrI:7861544-7861624 4.44e-01 80 chrI:8288816-8288896 2.63e-02 80 chrX:16872539-16872619 6.94e-01 80 chrII:9282993-9283073 9.03e-03 65_[+1(1.25e-05)]_7 chrIV:2049068-2049148 9.42e-01 80 chrI:11578316-11578396 2.62e-01 80 chrII:13888503-13888583 4.81e-01 80 chrV:8001056-8001136 4.29e-01 80 chrIII:10742631-10742711 1.10e-02 66_[+1(6.13e-05)]_6 chrI:10197338-10197418 2.96e-03 11_[+4(6.86e-05)]_61 chrIV:2676435-2676515 5.27e-04 24_[+5(2.06e-05)]_13_[+5(9.53e-06)]_\ 27 chrV:14012227-14012307 3.27e-01 80 chrIV:6790621-6790701 6.78e-01 80 chrV:975171-975251 8.43e-01 80 chrV:2694574-2694654 4.71e-01 80 chrIII:4004332-4004412 6.40e-03 32_[+4(2.92e-05)]_15_[+4(9.58e-06)]_\ 17 chrIII:4171138-4171218 1.97e-01 80 chrX:12018089-12018169 1.65e-02 80 chrIII:1142961-1143041 6.60e-03 33_[+4(9.58e-06)]_13_[+4(2.92e-05)]_\ 18 chrX:15040832-15040912 1.32e-01 80 chrI:2291209-2291289 2.66e-03 80 chrI:2876627-2876707 9.85e-01 80 chrIV:8782279-8782359 5.71e-01 80 chrV:9273613-9273693 9.96e-01 80 chrX:15707516-15707596 6.71e-02 80 chrII:14383820-14383900 4.38e-03 5_[+5(3.16e-05)]_67 chrI:6091101-6091181 3.92e-04 9_[+5(3.16e-05)]_5_[+4(9.58e-06)]_\ 13_[+4(4.98e-05)]_29 chrIV:8891343-8891423 1.51e-04 21_[+1(1.25e-05)]_51 chrX:949634-949714 9.78e-02 80 chrX:17030671-17030751 1.02e-01 29_[+2(2.81e-05)]_43 chrIII:1601630-1601710 2.88e-01 80 chrI:14721555-14721635 3.17e-02 63_[+4(8.61e-05)]_9 chrV:13808677-13808757 5.98e-01 80 chrI:9988934-9989014 4.10e-01 80 chrIV:5394884-5394964 1.15e-03 10_[+4(2.92e-05)]_62 chrV:14415262-14415342 7.85e-01 80 chrI:13339065-13339145 5.98e-01 80 chrV:12465654-12465734 2.47e-02 21_[+3(1.20e-05)]_51 chrIII:8447083-8447163 2.27e-01 80 chrIV:1420243-1420323 3.04e-03 64_[+4(8.61e-05)]_8 chrIII:888068-888148 3.68e-01 80 chrI:5699083-5699163 2.24e-01 80 chrIV:884885-884965 1.95e-03 40_[+3(1.20e-05)]_32 chrI:10807350-10807430 1.00e+00 80 chrII:13460791-13460871 5.17e-01 80 chrV:10040017-10040097 5.66e-02 26_[+1(8.82e-05)]_46 chrIII:1080733-1080813 4.51e-02 80 chrIII:8358391-8358471 8.73e-01 80 chrX:2242955-2243035 3.40e-01 80 chrX:16930918-16930998 3.40e-02 80 chrIV:11026131-11026211 4.42e-01 80 chrX:5475330-5475410 3.48e-02 19_[+1(8.82e-05)]_53 chrX:16446077-16446157 9.43e-01 80 chrI:3350000-3350080 1.23e-01 80 chrII:9716792-9716872 3.60e-02 43_[+2(1.53e-05)]_29 chrI:12206618-12206698 3.88e-05 58_[+3(2.23e-05)]_6_[+1(2.70e-05)] chrII:216721-216801 1.59e-02 54_[+1(3.77e-05)]_18 chrV:5505223-5505303 2.16e-03 [+5(9.53e-06)]_10_[+5(2.06e-05)]_54 chrV:10537032-10537112 3.81e-02 41_[+5(2.06e-05)]_31 chrX:14560359-14560439 7.43e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************