******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-27.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:4397634-4397714 1.0000 80 chrX:2265215-2265295 1.0000 80 chrIII:9968525-9968605 1.0000 80 chrX:4066605-4066685 1.0000 80 chrX:1185543-1185623 1.0000 80 chrX:17327414-17327494 1.0000 80 chrIII:4659629-4659709 1.0000 80 chrIV:6064815-6064895 1.0000 80 chrV:7893021-7893101 1.0000 80 chrX:4880193-4880273 1.0000 80 chrI:11670294-11670374 1.0000 80 chrX:11758907-11758987 1.0000 80 chrX:5027967-5028047 1.0000 80 chrV:10672791-10672871 1.0000 80 chrII:4036683-4036763 1.0000 80 chrX:7467658-7467738 1.0000 80 chrX:16002616-16002696 1.0000 80 chrII:6115411-6115491 1.0000 80 chrIV:8171538-8171618 1.0000 80 chrIII:7300915-7300995 1.0000 80 chrIII:3673016-3673096 1.0000 80 chrIII:5951765-5951845 1.0000 80 chrX:4230078-4230158 1.0000 80 chrII:9311883-9311963 1.0000 80 chrX:11811558-11811638 1.0000 80 chrX:16772295-16772375 1.0000 80 chrII:5953348-5953428 1.0000 80 chrX:5988051-5988131 1.0000 80 chrX:13735995-13736075 1.0000 80 chrI:4010605-4010685 1.0000 80 chrIV:8071111-8071191 1.0000 80 chrV:15072822-15072902 1.0000 80 chrX:5116344-5116424 1.0000 80 chrIII:12942471-12942551 1.0000 80 chrX:17362705-17362785 1.0000 80 chrX:10554101-10554181 1.0000 80 chrX:1598194-1598274 1.0000 80 chrIV:11715285-11715365 1.0000 80 chrI:5400236-5400316 1.0000 80 chrI:7124461-7124541 1.0000 80 chrIV:5988807-5988887 1.0000 80 chrIII:352169-352249 1.0000 80 chrIII:8973331-8973411 1.0000 80 chrX:4939141-4939221 1.0000 80 chrV:6341190-6341270 1.0000 80 chrIV:12198969-12199049 1.0000 80 chrX:4404887-4404967 1.0000 80 chrV:7745998-7746078 1.0000 80 chrV:1493056-1493136 1.0000 80 chrV:4431491-4431571 1.0000 80 chrX:11478829-11478909 1.0000 80 chrII:6772624-6772704 1.0000 80 chrIII:1787385-1787465 1.0000 80 chrX:3342490-3342570 1.0000 80 chrIV:15931340-15931420 1.0000 80 chrV:14948745-14948825 1.0000 80 chrI:13028563-13028643 1.0000 80 chrX:17562367-17562447 1.0000 80 chrV:7112581-7112661 1.0000 80 chrII:3816431-3816511 1.0000 80 chrX:3903300-3903380 1.0000 80 chrV:8699747-8699827 1.0000 80 chrII:7981886-7981966 1.0000 80 chrV:7982391-7982471 1.0000 80 chrV:287381-287461 1.0000 80 chrV:12811338-12811418 1.0000 80 chrI:7397644-7397724 1.0000 80 chrIV:17472264-17472344 1.0000 80 chrIV:5752928-5753008 1.0000 80 chrI:299769-299849 1.0000 80 chrV:11075753-11075833 1.0000 80 chrI:7949627-7949707 1.0000 80 chrI:4915028-4915108 1.0000 80 chrI:7712836-7712916 1.0000 80 chrIV:7550029-7550109 1.0000 80 chrX:8476511-8476591 1.0000 80 chrX:4297542-4297622 1.0000 80 chrIII:10358906-10358986 1.0000 80 chrV:11531124-11531204 1.0000 80 chrV:8773928-8774008 1.0000 80 chrIV:8006539-8006619 1.0000 80 chrX:13147233-13147313 1.0000 80 chrV:15075041-15075121 1.0000 80 chrIV:11008466-11008546 1.0000 80 chrII:13788960-13789040 1.0000 80 chrX:16324366-16324446 1.0000 80 chrII:7886735-7886815 1.0000 80 chrIII:9509893-9509973 1.0000 80 chrII:1310279-1310359 1.0000 80 chrV:12314591-12314671 1.0000 80 chrX:15668285-15668365 1.0000 80 chrII:7985169-7985249 1.0000 80 chrV:12245077-12245157 1.0000 80 chrII:10583852-10583932 1.0000 80 chrV:9704592-9704672 1.0000 80 chrIII:2932398-2932478 1.0000 80 chrIV:2772458-2772538 1.0000 80 chrX:5875640-5875720 1.0000 80 chrV:9549577-9549657 1.0000 80 chrII:15042964-15043044 1.0000 80 chrX:3825661-3825741 1.0000 80 chrX:12204521-12204601 1.0000 80 chrV:20417989-20418069 1.0000 80 chrX:8379286-8379366 1.0000 80 chrIII:2935224-2935304 1.0000 80 chrIII:12013177-12013257 1.0000 80 chrII:2220040-2220120 1.0000 80 chrX:13220682-13220762 1.0000 80 chrII:5049483-5049563 1.0000 80 chrX:4699794-4699874 1.0000 80 chrI:10099234-10099314 1.0000 80 chrIII:9271021-9271101 1.0000 80 chrII:3428304-3428384 1.0000 80 chrV:10041646-10041726 1.0000 80 chrIV:6062292-6062372 1.0000 80 chrII:1086671-1086751 1.0000 80 chrIV:6005902-6005982 1.0000 80 chrI:6334478-6334558 1.0000 80 chrI:10866683-10866763 1.0000 80 chrIII:9665617-9665697 1.0000 80 chrX:6961371-6961451 1.0000 80 chrI:4908216-4908296 1.0000 80 chrIV:17279303-17279383 1.0000 80 chrX:10434042-10434122 1.0000 80 chrI:10765621-10765701 1.0000 80 chrV:5967602-5967682 1.0000 80 chrII:12261328-12261408 1.0000 80 chrII:14605811-14605891 1.0000 80 chrIII:13718599-13718679 1.0000 80 chrV:9063071-9063151 1.0000 80 chrV:13686706-13686786 1.0000 80 chrIII:6348783-6348863 1.0000 80 chrX:3270832-3270912 1.0000 80 chrIII:4999061-4999141 1.0000 80 chrX:2321937-2322017 1.0000 80 chrV:13200795-13200875 1.0000 80 chrX:14238447-14238527 1.0000 80 chrIII:4505931-4506011 1.0000 80 chrII:4606967-4607047 1.0000 80 chrX:9668746-9668826 1.0000 80 chrIV:6061426-6061506 1.0000 80 chrX:8796819-8796899 1.0000 80 chrV:11076585-11076665 1.0000 80 chrIV:5666405-5666485 1.0000 80 chrV:8217742-8217822 1.0000 80 chrX:8236128-8236208 1.0000 80 chrX:14911389-14911469 1.0000 80 chrX:12629458-12629538 1.0000 80 chrIII:7661270-7661350 1.0000 80 chrX:15362275-15362355 1.0000 80 chrIV:8922148-8922228 1.0000 80 chrIV:10192020-10192100 1.0000 80 chrI:2741161-2741241 1.0000 80 chrX:11472029-11472109 1.0000 80 chrX:11240907-11240987 1.0000 80 chrX:4388397-4388477 1.0000 80 chrV:7847322-7847402 1.0000 80 chrV:5520054-5520134 1.0000 80 chrX:12177022-12177102 1.0000 80 chrV:2603177-2603257 1.0000 80 chrIII:6316819-6316899 1.0000 80 chrII:7964797-7964877 1.0000 80 chrV:3717919-3717999 1.0000 80 chrI:11591000-11591080 1.0000 80 chrI:7369322-7369402 1.0000 80 chrIV:7892192-7892272 1.0000 80 chrIII:6289462-6289542 1.0000 80 chrII:15212591-15212671 1.0000 80 chrIV:8002047-8002127 1.0000 80 chrX:6735654-6735734 1.0000 80 chrX:4144452-4144532 1.0000 80 chrV:7804628-7804708 1.0000 80 chrIII:7711064-7711144 1.0000 80 chrV:1154861-1154941 1.0000 80 chrI:11520472-11520552 1.0000 80 chrI:6810495-6810575 1.0000 80 chrIV:4007799-4007879 1.0000 80 chrX:8160253-8160333 1.0000 80 chrX:5205746-5205826 1.0000 80 chrIV:4236895-4236975 1.0000 80 chrII:3951511-3951591 1.0000 80 chrV:8518469-8518549 1.0000 80 chrI:5034436-5034516 1.0000 80 chrIII:8683828-8683908 1.0000 80 chrV:15512881-15512961 1.0000 80 chrII:5275155-5275235 1.0000 80 chrI:4917716-4917796 1.0000 80 chrV:14368508-14368588 1.0000 80 chrV:15515480-15515560 1.0000 80 chrX:15100755-15100835 1.0000 80 chrX:3678763-3678843 1.0000 80 chrV:20776914-20776994 1.0000 80 chrIV:11110738-11110818 1.0000 80 chrIV:3521132-3521212 1.0000 80 chrIII:9700272-9700352 1.0000 80 chrIV:1168672-1168752 1.0000 80 chrX:15877149-15877229 1.0000 80 chrIV:7903497-7903577 1.0000 80 chrIV:11916174-11916254 1.0000 80 chrX:15279437-15279517 1.0000 80 chrI:14524701-14524781 1.0000 80 chrII:9891489-9891569 1.0000 80 chrX:10767896-10767976 1.0000 80 chrX:11387035-11387115 1.0000 80 chrV:8801300-8801380 1.0000 80 chrX:8016075-8016155 1.0000 80 chrX:11469817-11469897 1.0000 80 chrIV:3872598-3872678 1.0000 80 chrIII:6695297-6695377 1.0000 80 chrI:4494121-4494201 1.0000 80 chrIII:4125979-4126059 1.0000 80 chrX:9298024-9298104 1.0000 80 chrX:15340977-15341057 1.0000 80 chrV:11638737-11638817 1.0000 80 chrI:5011171-5011251 1.0000 80 chrI:10030107-10030187 1.0000 80 chrX:14549757-14549837 1.0000 80 chrV:13396585-13396665 1.0000 80 chrIV:7629093-7629173 1.0000 80 chrII:10174530-10174610 1.0000 80 chrIV:13079313-13079393 1.0000 80 chrII:361630-361710 1.0000 80 chrIV:5582436-5582516 1.0000 80 chrX:4982241-4982321 1.0000 80 chrIII:8286123-8286203 1.0000 80 chrX:6052880-6052960 1.0000 80 chrV:9545450-9545530 1.0000 80 chrX:3541022-3541102 1.0000 80 chrI:2687546-2687626 1.0000 80 chrII:6828446-6828526 1.0000 80 chrX:15042526-15042606 1.0000 80 chrI:8759876-8759956 1.0000 80 chrX:2368580-2368660 1.0000 80 chrIII:4222630-4222710 1.0000 80 chrV:6516839-6516919 1.0000 80 chrX:4899836-4899916 1.0000 80 chrX:16527882-16527962 1.0000 80 chrX:16040412-16040492 1.0000 80 chrII:8796603-8796683 1.0000 80 chrX:12656813-12656893 1.0000 80 chrII:9931184-9931264 1.0000 80 chrX:15342297-15342377 1.0000 80 chrV:6359430-6359510 1.0000 80 chrV:10862076-10862156 1.0000 80 chrIV:4026085-4026165 1.0000 80 chrV:7848438-7848518 1.0000 80 chrIII:8700739-8700819 1.0000 80 chrV:2681533-2681613 1.0000 80 chrIV:6907726-6907806 1.0000 80 chrV:285154-285234 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ceh-27/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-27.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.262 C 0.226 G 0.246 T 0.266 Background letter frequencies (from file dataset with add-one prior applied): A 0.262 C 0.226 G 0.246 T 0.266 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF YYTYTCTY MEME-1 width = 8 sites = 56 llr = 443 E-value = 1.6e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif YYTYTCTY MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 3336:a:6 probability G :::::::: matrix T 7774a:a4 bits 2.1 * 1.9 *** 1.7 *** 1.5 *** Relative 1.3 *** Entropy 1.1 ******** (11.4 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTCTCTC consensus CCCT T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYTYTCTY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:6516839-6516919 44 1.54e-05 CGCCCGTGGT TTTCTCTC GTTTCGCTGT chrII:7964797-7964877 33 1.54e-05 ATGCCCCTTT TTTCTCTC TCTATCTCCC chrV:12314591-12314671 20 1.54e-05 TTGCATTTTG TTTCTCTC TTCTTCCATC chrIV:11008466-11008546 31 1.54e-05 CTCTATACCT TTTCTCTC TCTCTTCTAC chrV:15075041-15075121 31 1.54e-05 cttcttcttc tttctctc tgttctCTAC chrII:6772624-6772704 27 1.54e-05 TCGAATCTAA TTTCTCTC CTGACACATC chrIV:12198969-12199049 60 1.54e-05 ATCGTTCACC TTTCTCTC ATTTTTTGTG chrIII:3673016-3673096 22 1.54e-05 TGCGTCTCTC TTTCTCTC TATAGAAATA chrI:5011171-5011251 2 4.15e-05 C TCTCTCTC ATGTTTCCCA chrX:15279437-15279517 36 4.15e-05 TGAGAGCAAA tctctctc tctctctctc chrIV:1168672-1168752 59 4.15e-05 gggtctctga cttctctc GCCTGTCGCC chrI:4917716-4917796 46 4.15e-05 GGCTCTCTCT TCTCTCTC ACCACCACCA chrII:3951511-3951591 57 4.15e-05 AAGTGAATAG tctctctc tgtgtctctc chrIV:4007799-4007879 48 4.15e-05 GTCTCCGCCC CTTCTCTC TGCTCGAGTT chrV:20417989-20418069 2 4.15e-05 c tctctctc actcgctGGC chrV:9704592-9704672 6 4.15e-05 CGTCT CTTCTCTC AACGAGATCT chrII:7985169-7985249 72 4.15e-05 TAGTGCTCAT TCTCTCTC A chrV:4431491-4431571 7 4.15e-05 Cctctc tctctctc tctctatcCA chrX:15100755-15100835 64 7.26e-05 TTACTCACTC TTCCTCTC TTGCCAACA chrII:5953348-5953428 38 7.26e-05 CTTGAGCGCT TTCCTCTC CGCGAAGAAG chrII:4606967-4607047 15 9.07e-05 AATTGTTTTC TTTTTCTC ACAAATTTGT chrII:7981886-7981966 13 9.07e-05 TTTTCTAAAT TTTTTCTC ATTTTGCTGC chrX:3342490-3342570 58 9.07e-05 GACATCACGA TTTTTCTC GAATGTTGTT chrX:16772295-16772375 44 9.07e-05 TGTGTGTGTG TTTTTCTC CAGAATTTTT chrIII:8973331-8973411 13 1.02e-04 GCATTGCTCG CCTCTCTC TGCAATGTGC chrX:4899836-4899916 68 1.33e-04 cccccccccT CTTCTCTT ACTCT chrV:20776914-20776994 17 1.33e-04 ACAAATATGT TCTCTCTT CTCTTTCAAG chrI:4908216-4908296 49 1.33e-04 TCTAGTGTCT CTTCTCTT GAGTACACTC chrV:14948745-14948825 23 1.33e-04 GGTCTCCCAG TCTCTCTT GTCATGTGTT chrII:4036683-4036763 29 1.33e-04 AAGTAGTACT CTTCTCTT CCCGAAAGAT chrIII:4125979-4126059 37 1.55e-04 TACTCCCATC TCCCTCTC CAAAACCAAC chrII:3428304-3428384 23 1.55e-04 AGCCATCGCC TCCCTCTC ACCCCCTCCA chrIII:8286123-8286203 72 2.01e-04 TATTCGTTTT TCTTTCTC T chrII:9891489-9891569 43 2.01e-04 CGTAGAACAC TCTTTCTC TGCGTCTCTT chrII:1086671-1086751 18 2.01e-04 GCTCCGCCCA CTTTTCTC TGTGTTCTTC chrII:5049483-5049563 21 2.01e-04 TTTATTCTAC TTCCTCTT ACTTGAAAAA chrII:1310279-1310359 39 2.01e-04 CACACAGCGG CTTTTCTC GAGTACCAAC chrIII:10358906-10358986 13 2.01e-04 GATGACGTTG TTCCTCTT TTCCCCATTC chrV:6359430-6359510 22 2.22e-04 GGGCACCGAC TTTTTCTT GGCGGTGAGT chrIV:13079313-13079393 34 2.22e-04 ACTGTTTTGT TTTTTCTT TCACAGTCTT chrIII:6316819-6316899 54 2.22e-04 TTTGAAGTGG TTTTTCTT GAGAGGAGGT chrII:12261328-12261408 53 2.22e-04 TTTTGGGCAT tttttctt cttttcaatt chrX:5027967-5028047 2 2.22e-04 T TTTTTCTT CCAAGAATGC chrI:299769-299849 2 2.38e-04 C TTCTTCTC GACACGAAGA chrX:12656813-12656893 58 2.60e-04 TCCTCCCTGT CCCCTCTC TAGAATTTCC chrX:3541022-3541102 39 2.60e-04 CTAAATGGGT CCCCTCTC CTCAATTGCC chrII:9931184-9931264 41 2.99e-04 ACGAGGAATT CTCCTCTT CCAGGATTTT chrV:10041646-10041726 9 2.99e-04 TTTTCCTC CTCCTCTT TTCCTCCCAT chrX:4939141-4939221 47 2.99e-04 CAGAGAGACG CTCCTCTT TGCTCGCACT chrX:8016075-8016155 50 3.35e-04 CGCGGATTCG TCTTTCTT CTTCTTATAA chrV:1154861-1154941 48 3.35e-04 CGTCTCCGTT CTTTTCTT GTTGCGGTGG chrIV:10192020-10192100 69 3.35e-04 CGTGAACCCA CTTTTCTT GAAG chrIII:12942471-12942551 20 3.91e-04 CCCCCTGGCT CCCCTCTT TGAGCAAGGG chrIII:9700272-9700352 15 4.48e-04 ATCAGGCAAT CTCTTCTT TAACCCCACA chrII:13788960-13789040 6 4.48e-04 TGTGC TCCTTCTT CACTCATTCT chrX:10554101-10554181 73 4.48e-04 TTGTGCTCAG CTCTTCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYTYTCTY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:6516839-6516919 1.5e-05 43_[+1]_29 chrII:7964797-7964877 1.5e-05 32_[+1]_40 chrV:12314591-12314671 1.5e-05 19_[+1]_53 chrIV:11008466-11008546 1.5e-05 30_[+1]_42 chrV:15075041-15075121 1.5e-05 30_[+1]_42 chrII:6772624-6772704 1.5e-05 26_[+1]_46 chrIV:12198969-12199049 1.5e-05 59_[+1]_13 chrIII:3673016-3673096 1.5e-05 21_[+1]_51 chrI:5011171-5011251 4.1e-05 1_[+1]_71 chrX:15279437-15279517 4.1e-05 35_[+1]_37 chrIV:1168672-1168752 4.1e-05 58_[+1]_14 chrI:4917716-4917796 4.1e-05 45_[+1]_27 chrII:3951511-3951591 4.1e-05 56_[+1]_16 chrIV:4007799-4007879 4.1e-05 47_[+1]_25 chrV:20417989-20418069 4.1e-05 1_[+1]_71 chrV:9704592-9704672 4.1e-05 5_[+1]_67 chrII:7985169-7985249 4.1e-05 71_[+1]_1 chrV:4431491-4431571 4.1e-05 6_[+1]_66 chrX:15100755-15100835 7.3e-05 63_[+1]_9 chrII:5953348-5953428 7.3e-05 37_[+1]_35 chrII:4606967-4607047 9.1e-05 14_[+1]_58 chrII:7981886-7981966 9.1e-05 12_[+1]_60 chrX:3342490-3342570 9.1e-05 57_[+1]_15 chrX:16772295-16772375 9.1e-05 43_[+1]_29 chrIII:8973331-8973411 0.0001 12_[+1]_60 chrX:4899836-4899916 0.00013 67_[+1]_5 chrV:20776914-20776994 0.00013 16_[+1]_56 chrI:4908216-4908296 0.00013 48_[+1]_24 chrV:14948745-14948825 0.00013 22_[+1]_50 chrII:4036683-4036763 0.00013 28_[+1]_44 chrIII:4125979-4126059 0.00015 36_[+1]_36 chrII:3428304-3428384 0.00015 22_[+1]_50 chrIII:8286123-8286203 0.0002 71_[+1]_1 chrII:9891489-9891569 0.0002 42_[+1]_30 chrII:1086671-1086751 0.0002 17_[+1]_55 chrII:5049483-5049563 0.0002 20_[+1]_52 chrII:1310279-1310359 0.0002 38_[+1]_34 chrIII:10358906-10358986 0.0002 12_[+1]_60 chrV:6359430-6359510 0.00022 21_[+1]_51 chrIV:13079313-13079393 0.00022 33_[+1]_39 chrIII:6316819-6316899 0.00022 53_[+1]_19 chrII:12261328-12261408 0.00022 52_[+1]_20 chrX:5027967-5028047 0.00022 1_[+1]_71 chrI:299769-299849 0.00024 1_[+1]_71 chrX:12656813-12656893 0.00026 57_[+1]_15 chrX:3541022-3541102 0.00026 38_[+1]_34 chrII:9931184-9931264 0.0003 40_[+1]_32 chrV:10041646-10041726 0.0003 8_[+1]_64 chrX:4939141-4939221 0.0003 46_[+1]_26 chrX:8016075-8016155 0.00034 49_[+1]_23 chrV:1154861-1154941 0.00034 47_[+1]_25 chrIV:10192020-10192100 0.00034 68_[+1]_4 chrIII:12942471-12942551 0.00039 19_[+1]_53 chrIII:9700272-9700352 0.00045 14_[+1]_58 chrII:13788960-13789040 0.00045 5_[+1]_67 chrX:10554101-10554181 0.00045 72_[+1] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYTYTCTY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YYTYTCTY width=8 seqs=56 chrV:6516839-6516919 ( 44) TTTCTCTC 1 chrII:7964797-7964877 ( 33) TTTCTCTC 1 chrV:12314591-12314671 ( 20) TTTCTCTC 1 chrIV:11008466-11008546 ( 31) TTTCTCTC 1 chrV:15075041-15075121 ( 31) TTTCTCTC 1 chrII:6772624-6772704 ( 27) TTTCTCTC 1 chrIV:12198969-12199049 ( 60) TTTCTCTC 1 chrIII:3673016-3673096 ( 22) TTTCTCTC 1 chrI:5011171-5011251 ( 2) TCTCTCTC 1 chrX:15279437-15279517 ( 36) TCTCTCTC 1 chrIV:1168672-1168752 ( 59) CTTCTCTC 1 chrI:4917716-4917796 ( 46) TCTCTCTC 1 chrII:3951511-3951591 ( 57) TCTCTCTC 1 chrIV:4007799-4007879 ( 48) CTTCTCTC 1 chrV:20417989-20418069 ( 2) TCTCTCTC 1 chrV:9704592-9704672 ( 6) CTTCTCTC 1 chrII:7985169-7985249 ( 72) TCTCTCTC 1 chrV:4431491-4431571 ( 7) TCTCTCTC 1 chrX:15100755-15100835 ( 64) TTCCTCTC 1 chrII:5953348-5953428 ( 38) TTCCTCTC 1 chrII:4606967-4607047 ( 15) TTTTTCTC 1 chrII:7981886-7981966 ( 13) TTTTTCTC 1 chrX:3342490-3342570 ( 58) TTTTTCTC 1 chrX:16772295-16772375 ( 44) TTTTTCTC 1 chrIII:8973331-8973411 ( 13) CCTCTCTC 1 chrX:4899836-4899916 ( 68) CTTCTCTT 1 chrV:20776914-20776994 ( 17) TCTCTCTT 1 chrI:4908216-4908296 ( 49) CTTCTCTT 1 chrV:14948745-14948825 ( 23) TCTCTCTT 1 chrII:4036683-4036763 ( 29) CTTCTCTT 1 chrIII:4125979-4126059 ( 37) TCCCTCTC 1 chrII:3428304-3428384 ( 23) TCCCTCTC 1 chrIII:8286123-8286203 ( 72) TCTTTCTC 1 chrII:9891489-9891569 ( 43) TCTTTCTC 1 chrII:1086671-1086751 ( 18) CTTTTCTC 1 chrII:5049483-5049563 ( 21) TTCCTCTT 1 chrII:1310279-1310359 ( 39) CTTTTCTC 1 chrIII:10358906-10358986 ( 13) TTCCTCTT 1 chrV:6359430-6359510 ( 22) TTTTTCTT 1 chrIV:13079313-13079393 ( 34) TTTTTCTT 1 chrIII:6316819-6316899 ( 54) TTTTTCTT 1 chrII:12261328-12261408 ( 53) TTTTTCTT 1 chrX:5027967-5028047 ( 2) TTTTTCTT 1 chrI:299769-299849 ( 2) TTCTTCTC 1 chrX:12656813-12656893 ( 58) CCCCTCTC 1 chrX:3541022-3541102 ( 39) CCCCTCTC 1 chrII:9931184-9931264 ( 41) CTCCTCTT 1 chrV:10041646-10041726 ( 9) CTCCTCTT 1 chrX:4939141-4939221 ( 47) CTCCTCTT 1 chrX:8016075-8016155 ( 50) TCTTTCTT 1 chrV:1154861-1154941 ( 48) CTTTTCTT 1 chrIV:10192020-10192100 ( 69) CTTTTCTT 1 chrIII:12942471-12942551 ( 20) CCCCTCTT 1 chrIII:9700272-9700352 ( 15) CTCTTCTT 1 chrII:13788960-13789040 ( 6) TCCTTCTT 1 chrX:10554101-10554181 ( 73) CTCTTCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYTYTCTY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4765 E= 1.6e-012 -1245 58 -1245 131 -1245 58 -1245 131 -1245 34 -1245 143 -1245 151 -1245 43 -1245 -1245 -1245 191 -1245 214 -1245 -1245 -1245 -1245 -1245 191 -1245 142 -1245 56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYTYTCTY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 1.6e-012 0.000000 0.339286 0.000000 0.660714 0.000000 0.339286 0.000000 0.660714 0.000000 0.285714 0.000000 0.714286 0.000000 0.642857 0.000000 0.357143 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.607143 0.000000 0.392857 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YYTYTCTY MEME-1 regular expression -------------------------------------------------------------------------------- [TC][TC][TC][CT]TCT[CT] -------------------------------------------------------------------------------- Time 9.44 secs. ******************************************************************************** ******************************************************************************** MOTIF CACTTSAV MEME-2 width = 8 sites = 43 llr = 354 E-value = 2.1e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACTTSAV MEME-2 Description -------------------------------------------------------------------------------- Simplified A :8::::a4 pos.-specific C 9:a::5:2 probability G :::::5:3 matrix T 12:aa::: bits 2.1 1.9 *** * 1.7 *** * 1.5 * *** * Relative 1.3 ***** * Entropy 1.1 ******* (11.9 bits) 0.9 ******* 0.6 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel CACTTGAA consensus T C G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTTSAV MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:4222630-4222710 73 1.60e-05 GGACAAGAAA CACTTGAA chrX:6961371-6961451 36 1.60e-05 ACCAAACGGG CACTTGAA GAACACAACA chrI:6334478-6334558 7 1.60e-05 ATTTCA CACTTGAA GGTGGTGTAG chrIV:6064815-6064895 35 1.60e-05 AATCAAGGAC CACTTGAA GCAAAAAAGA chrV:15512881-15512961 32 3.07e-05 CATCCAGGGG CACTTCAA GTTCGCCTGT chrV:5967602-5967682 32 3.07e-05 GAAGCCTATG CACTTCAA AAATATCAAA chrV:4431491-4431571 23 3.07e-05 tctctctatc CACTTCAA AATGTCCACT chrX:11758907-11758987 1 3.07e-05 . CACTTCAA TTCTGTTCAT chrX:15042526-15042606 42 4.57e-05 TTGAGTGTTT CACTTGAG AAGTTTGCTG chrII:361630-361710 11 4.57e-05 TTGAGAGCAT CACTTGAG ACACAAACCA chrIV:8002047-8002127 19 4.57e-05 TGAGGGGGAA CACTTGAG TGGACGTGGT chrII:14605811-14605891 34 4.57e-05 ACATCAAGTG CACTTGAG ATTTTAGGGC chrX:5875640-5875720 54 4.57e-05 TTTCCACCAT CACTTGAG AAGTAATTAA chrX:5116344-5116424 18 4.57e-05 TTGCAATTGG CACTTGAG TGGGGGTGCT chrIII:5951765-5951845 69 4.57e-05 GTTTCATGTC CACTTGAG CGTG chrIII:3673016-3673096 51 4.57e-05 ACTCCAAGCA CACTTGAG GTAAATAAAA chrX:5027967-5028047 19 4.57e-05 TCCAAGAATG CACTTGAG TACTCTTGAG chrII:10583852-10583932 17 5.95e-05 AAGCACGCAT CACTTCAG CCAATATTCG chrIII:12013177-12013257 39 7.33e-05 GCGCCTCACC CACTTGAC ACACTATTTC chrX:4880193-4880273 64 7.33e-05 TGTTGGATGG CACTTGAC TTACGAACA chrV:13686706-13686786 42 8.59e-05 CCGACGTCAA CACTTCAC TGCTCTCTCA chrX:15668285-15668365 24 8.59e-05 ttacctttcg cacttcac acacacacac chrIV:8006539-8006619 69 8.59e-05 AATCATCGGA CACTTCAC ACGC chrV:7745998-7746078 5 8.59e-05 CACA CACTTCAC TGGACAAGGG chrX:7467658-7467738 54 8.59e-05 CTATTGCGTC CACTTCAC CACACATCAT chrX:2265215-2265295 52 8.59e-05 GCACTGCAAC CACTTCAC CCAAAAAAAG chrX:16527882-16527962 30 1.02e-04 GTTCTAGTAC CTCTTGAA AAAGCGTCTC chrV:11638737-11638817 38 1.17e-04 AAAGAGAGGG CTCTTCAA AAtgtgtatg chrIV:7903497-7903577 58 1.17e-04 GCGTCTCCAC CTCTTCAA GCAATCACTG chrIV:6061426-6061506 30 1.17e-04 AGCTTCTCAC CTCTTCAA ACAAACTTTT chrX:10434042-10434122 16 1.17e-04 GAAAGTACAT CTCTTCAA TAAATTATTT chrIV:5752928-5753008 72 1.17e-04 TAACAGAATA CTCTTCAA A chrII:6772624-6772704 68 1.17e-04 GTTGAAAAGC CTCTTCAA AACTA chrIV:10192020-10192100 36 1.60e-04 AGGTTGAAGG CTCTTGAC ATAATGAATG chrII:10174530-10174610 64 1.73e-04 TCTCGCAACG CTCTTCAC TTTACAGTT chrV:285154-285234 62 1.92e-04 TGAGGAAGTG TACTTGAA AGAGCTCGGA chrII:4606967-4607047 40 1.92e-04 TGTGCACAAA TACTTGAA ATTTTTGAGA chrI:7949627-7949707 47 2.26e-04 ATTGTTGAAC CACTTGAT CGTAGACTTC chrV:10672791-10672871 42 2.40e-04 TCACAATCGG CACTTCAT AACAAGTAAG chrIV:5666405-5666485 60 2.58e-04 TAACTATACG TACTTGAG AATGGATTTT chrV:12245077-12245157 8 2.58e-04 GTTCGGG TACTTGAG AAAAAAATGT chrII:4036683-4036763 70 2.58e-04 AGGACCACAC TACTTGAG AGC chrI:4010605-4010685 23 4.76e-04 TCAGTTTTTC CATTTCAA GTACCCACTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTTSAV MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:4222630-4222710 1.6e-05 72_[+2] chrX:6961371-6961451 1.6e-05 35_[+2]_37 chrI:6334478-6334558 1.6e-05 6_[+2]_66 chrIV:6064815-6064895 1.6e-05 34_[+2]_38 chrV:15512881-15512961 3.1e-05 31_[+2]_41 chrV:5967602-5967682 3.1e-05 31_[+2]_41 chrV:4431491-4431571 3.1e-05 22_[+2]_50 chrX:11758907-11758987 3.1e-05 [+2]_72 chrX:15042526-15042606 4.6e-05 41_[+2]_31 chrII:361630-361710 4.6e-05 10_[+2]_62 chrIV:8002047-8002127 4.6e-05 18_[+2]_54 chrII:14605811-14605891 4.6e-05 33_[+2]_39 chrX:5875640-5875720 4.6e-05 53_[+2]_19 chrX:5116344-5116424 4.6e-05 17_[+2]_55 chrIII:5951765-5951845 4.6e-05 68_[+2]_4 chrIII:3673016-3673096 4.6e-05 50_[+2]_22 chrX:5027967-5028047 4.6e-05 18_[+2]_54 chrII:10583852-10583932 5.9e-05 16_[+2]_56 chrIII:12013177-12013257 7.3e-05 38_[+2]_34 chrX:4880193-4880273 7.3e-05 63_[+2]_9 chrV:13686706-13686786 8.6e-05 41_[+2]_31 chrX:15668285-15668365 8.6e-05 23_[+2]_49 chrIV:8006539-8006619 8.6e-05 68_[+2]_4 chrV:7745998-7746078 8.6e-05 4_[+2]_68 chrX:7467658-7467738 8.6e-05 53_[+2]_19 chrX:2265215-2265295 8.6e-05 51_[+2]_21 chrX:16527882-16527962 0.0001 29_[+2]_43 chrV:11638737-11638817 0.00012 37_[+2]_35 chrIV:7903497-7903577 0.00012 57_[+2]_15 chrIV:6061426-6061506 0.00012 29_[+2]_43 chrX:10434042-10434122 0.00012 15_[+2]_57 chrIV:5752928-5753008 0.00012 71_[+2]_1 chrII:6772624-6772704 0.00012 67_[+2]_5 chrIV:10192020-10192100 0.00016 35_[+2]_37 chrII:10174530-10174610 0.00017 63_[+2]_9 chrV:285154-285234 0.00019 61_[+2]_11 chrII:4606967-4607047 0.00019 39_[+2]_33 chrI:7949627-7949707 0.00023 46_[+2]_26 chrV:10672791-10672871 0.00024 41_[+2]_31 chrIV:5666405-5666485 0.00026 59_[+2]_13 chrV:12245077-12245157 0.00026 7_[+2]_65 chrII:4036683-4036763 0.00026 69_[+2]_3 chrI:4010605-4010685 0.00048 22_[+2]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTTSAV MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACTTSAV width=8 seqs=43 chrIII:4222630-4222710 ( 73) CACTTGAA 1 chrX:6961371-6961451 ( 36) CACTTGAA 1 chrI:6334478-6334558 ( 7) CACTTGAA 1 chrIV:6064815-6064895 ( 35) CACTTGAA 1 chrV:15512881-15512961 ( 32) CACTTCAA 1 chrV:5967602-5967682 ( 32) CACTTCAA 1 chrV:4431491-4431571 ( 23) CACTTCAA 1 chrX:11758907-11758987 ( 1) CACTTCAA 1 chrX:15042526-15042606 ( 42) CACTTGAG 1 chrII:361630-361710 ( 11) CACTTGAG 1 chrIV:8002047-8002127 ( 19) CACTTGAG 1 chrII:14605811-14605891 ( 34) CACTTGAG 1 chrX:5875640-5875720 ( 54) CACTTGAG 1 chrX:5116344-5116424 ( 18) CACTTGAG 1 chrIII:5951765-5951845 ( 69) CACTTGAG 1 chrIII:3673016-3673096 ( 51) CACTTGAG 1 chrX:5027967-5028047 ( 19) CACTTGAG 1 chrII:10583852-10583932 ( 17) CACTTCAG 1 chrIII:12013177-12013257 ( 39) CACTTGAC 1 chrX:4880193-4880273 ( 64) CACTTGAC 1 chrV:13686706-13686786 ( 42) CACTTCAC 1 chrX:15668285-15668365 ( 24) CACTTCAC 1 chrIV:8006539-8006619 ( 69) CACTTCAC 1 chrV:7745998-7746078 ( 5) CACTTCAC 1 chrX:7467658-7467738 ( 54) CACTTCAC 1 chrX:2265215-2265295 ( 52) CACTTCAC 1 chrX:16527882-16527962 ( 30) CTCTTGAA 1 chrV:11638737-11638817 ( 38) CTCTTCAA 1 chrIV:7903497-7903577 ( 58) CTCTTCAA 1 chrIV:6061426-6061506 ( 30) CTCTTCAA 1 chrX:10434042-10434122 ( 16) CTCTTCAA 1 chrIV:5752928-5753008 ( 72) CTCTTCAA 1 chrII:6772624-6772704 ( 68) CTCTTCAA 1 chrIV:10192020-10192100 ( 36) CTCTTGAC 1 chrII:10174530-10174610 ( 64) CTCTTCAC 1 chrV:285154-285234 ( 62) TACTTGAA 1 chrII:4606967-4607047 ( 40) TACTTGAA 1 chrI:7949627-7949707 ( 47) CACTTGAT 1 chrV:10672791-10672871 ( 42) CACTTCAT 1 chrIV:5666405-5666485 ( 60) TACTTGAG 1 chrV:12245077-12245157 ( 8) TACTTGAG 1 chrII:4036683-4036763 ( 70) TACTTGAG 1 chrI:4010605-4010685 ( 23) CATTTCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTTSAV MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.05698 E= 2.1e-008 -1207 196 -1207 -119 159 -1207 -1207 -35 -1207 211 -1207 -351 -1207 -1207 -1207 191 -1207 -1207 -1207 191 -1207 104 112 -1207 193 -1207 -1207 -1207 68 4 30 -251 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTTSAV MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 43 E= 2.1e-008 0.000000 0.883721 0.000000 0.116279 0.790698 0.000000 0.000000 0.209302 0.000000 0.976744 0.000000 0.023256 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.465116 0.534884 0.000000 1.000000 0.000000 0.000000 0.000000 0.418605 0.232558 0.302326 0.046512 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACTTSAV MEME-2 regular expression -------------------------------------------------------------------------------- C[AT]CTT[GC]A[AGC] -------------------------------------------------------------------------------- Time 13.53 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTGTGTG MEME-3 width = 8 sites = 33 llr = 278 E-value = 2.7e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::2:2::: pos.-specific C :1::2::2 probability G :7:a:a:8 matrix T a28:7:a: bits 2.1 1.9 * * ** 1.7 * * ** 1.5 * * *** Relative 1.3 * ** *** Entropy 1.1 * ** *** (12.2 bits) 0.9 **** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTGTG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:6359430-6359510 63 1.83e-05 TCCACAAGAC TGTGTGTG CGTGAAGAGA chrV:11638737-11638817 66 1.83e-05 tgtgtgtgtg tgtgtgtg tgtgtgt chrIII:6695297-6695377 18 1.83e-05 TGTGTCTTTC TGTGTGTG GAGCTGACGC chrX:11469817-11469897 45 1.83e-05 Cgtgtgtgtg tgtgtgtg tgtgtgtgtg chrIV:11916174-11916254 58 1.83e-05 TGTTTCGGAA TGTGTGTG TACTTTCAAA chrI:11520472-11520552 20 1.83e-05 TGCATGTATG TGTGTGTG CGTTCACTTC chrX:4388397-4388477 34 1.83e-05 GAAgtgtgtg tgtgtgtg tgtgGCAAGA chrV:10041646-10041726 57 1.83e-05 GCAAAAAGCG TGTGTGTG AGTGTATTTG chrI:7712836-7712916 33 1.83e-05 GTTGAGTGCT TGTGTGTG TATCAAGATT chrX:16772295-16772375 36 1.83e-05 TTTTGGTATG TGTGTGTG TTTTTCTCCA chrX:1185543-1185623 68 1.83e-05 TTTTGTTGAG TGTGTGTG CATGT chrI:10765621-10765701 72 3.82e-05 AAGAGCACCT TTTGTGTG A chrX:4066605-4066685 50 3.82e-05 AACAAGCAAT TTTGTGTG GTGTGGGAAC chrX:15342297-15342377 40 7.18e-05 GGACCTTATT TGTGCGTG GAGCGCGCGT chrX:11472029-11472109 31 7.18e-05 AGTGTATTTA TGTGAGTG TATGTCGGCA chrIII:1787385-1787465 41 7.18e-05 ACAAGTGGTC TGTGAGTG GAAGTCGATA chrX:11478829-11478909 1 7.18e-05 . TGTGCGTG TCAGACGACG chrIII:7661270-7661350 73 1.07e-04 CCACGGCAAG TGTGTGTC chrIII:9271021-9271101 22 1.07e-04 ATGATGCTCA TGAGTGTG AAGTGGATGC chrII:2220040-2220120 65 1.07e-04 CAGGGGGATT TGAGTGTG GTGCGGTG chrII:9311883-9311963 21 1.07e-04 AGCGGGTCCT TGAGTGTG AAAATTTGTT chrIII:9968525-9968605 35 1.07e-04 GATGCTGCTT TGAGTGTG TCTATTTGTA chrX:5205746-5205826 65 1.24e-04 CAGTCCTCAT TCTGTGTG CAACAATG chrX:9668746-9668826 54 1.24e-04 GGGGGCGGGA TCTGTGTG AAGCTCTGCG chrX:4144452-4144532 35 1.60e-04 AATATTGTAG TTTGAGTG GGTGTACCGA chrV:9549577-9549657 19 1.60e-04 TGTCTGCGTT TTTGCGTG ACTGTGAATG chrIII:9509893-9509973 17 1.60e-04 TGGAAAGTGG TTTGAGTG GTGTCGTGTG chrX:6735654-6735734 61 1.98e-04 AGATTCGTTG TTTGTGTC CATGTGATTT chrIII:13718599-13718679 9 1.98e-04 TTGCACTT TTTGTGTC CTTATCTCTG chrIV:7629093-7629173 68 2.62e-04 TTTTTCTGCA TGTGAGTC ACGCT chrX:12177022-12177102 53 2.62e-04 AGAGGTGAAT TGAGAGTG AAAGACAAGA chrX:10434042-10434122 33 2.62e-04 ATAAATTATT TGTGCGTC CCTCCTGGTC chrV:15515480-15515560 56 3.09e-04 CCGGCGACCT TCTGCGTG TGAAGCAGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:6359430-6359510 1.8e-05 62_[+3]_10 chrV:11638737-11638817 1.8e-05 65_[+3]_7 chrIII:6695297-6695377 1.8e-05 17_[+3]_55 chrX:11469817-11469897 1.8e-05 44_[+3]_28 chrIV:11916174-11916254 1.8e-05 57_[+3]_15 chrI:11520472-11520552 1.8e-05 19_[+3]_53 chrX:4388397-4388477 1.8e-05 33_[+3]_39 chrV:10041646-10041726 1.8e-05 56_[+3]_16 chrI:7712836-7712916 1.8e-05 32_[+3]_40 chrX:16772295-16772375 1.8e-05 35_[+3]_37 chrX:1185543-1185623 1.8e-05 67_[+3]_5 chrI:10765621-10765701 3.8e-05 71_[+3]_1 chrX:4066605-4066685 3.8e-05 49_[+3]_23 chrX:15342297-15342377 7.2e-05 39_[+3]_33 chrX:11472029-11472109 7.2e-05 30_[+3]_42 chrIII:1787385-1787465 7.2e-05 40_[+3]_32 chrX:11478829-11478909 7.2e-05 [+3]_72 chrIII:7661270-7661350 0.00011 72_[+3] chrIII:9271021-9271101 0.00011 21_[+3]_51 chrII:2220040-2220120 0.00011 64_[+3]_8 chrII:9311883-9311963 0.00011 20_[+3]_52 chrIII:9968525-9968605 0.00011 34_[+3]_38 chrX:5205746-5205826 0.00012 64_[+3]_8 chrX:9668746-9668826 0.00012 53_[+3]_19 chrX:4144452-4144532 0.00016 34_[+3]_38 chrV:9549577-9549657 0.00016 18_[+3]_54 chrIII:9509893-9509973 0.00016 16_[+3]_56 chrX:6735654-6735734 0.0002 60_[+3]_12 chrIII:13718599-13718679 0.0002 8_[+3]_64 chrIV:7629093-7629173 0.00026 67_[+3]_5 chrX:12177022-12177102 0.00026 52_[+3]_20 chrX:10434042-10434122 0.00026 32_[+3]_40 chrV:15515480-15515560 0.00031 55_[+3]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGTG width=8 seqs=33 chrV:6359430-6359510 ( 63) TGTGTGTG 1 chrV:11638737-11638817 ( 66) TGTGTGTG 1 chrIII:6695297-6695377 ( 18) TGTGTGTG 1 chrX:11469817-11469897 ( 45) TGTGTGTG 1 chrIV:11916174-11916254 ( 58) TGTGTGTG 1 chrI:11520472-11520552 ( 20) TGTGTGTG 1 chrX:4388397-4388477 ( 34) TGTGTGTG 1 chrV:10041646-10041726 ( 57) TGTGTGTG 1 chrI:7712836-7712916 ( 33) TGTGTGTG 1 chrX:16772295-16772375 ( 36) TGTGTGTG 1 chrX:1185543-1185623 ( 68) TGTGTGTG 1 chrI:10765621-10765701 ( 72) TTTGTGTG 1 chrX:4066605-4066685 ( 50) TTTGTGTG 1 chrX:15342297-15342377 ( 40) TGTGCGTG 1 chrX:11472029-11472109 ( 31) TGTGAGTG 1 chrIII:1787385-1787465 ( 41) TGTGAGTG 1 chrX:11478829-11478909 ( 1) TGTGCGTG 1 chrIII:7661270-7661350 ( 73) TGTGTGTC 1 chrIII:9271021-9271101 ( 22) TGAGTGTG 1 chrII:2220040-2220120 ( 65) TGAGTGTG 1 chrII:9311883-9311963 ( 21) TGAGTGTG 1 chrIII:9968525-9968605 ( 35) TGAGTGTG 1 chrX:5205746-5205826 ( 65) TCTGTGTG 1 chrX:9668746-9668826 ( 54) TCTGTGTG 1 chrX:4144452-4144532 ( 35) TTTGAGTG 1 chrV:9549577-9549657 ( 19) TTTGCGTG 1 chrIII:9509893-9509973 ( 17) TTTGAGTG 1 chrX:6735654-6735734 ( 61) TTTGTGTC 1 chrIII:13718599-13718679 ( 9) TTTGTGTC 1 chrIV:7629093-7629173 ( 68) TGTGAGTC 1 chrX:12177022-12177102 ( 53) TGAGAGTG 1 chrX:10434042-10434122 ( 33) TGTGCGTC 1 chrV:15515480-15515560 ( 56) TCTGCGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4541 E= 2.7e-002 -1169 -1169 -1169 191 -1169 -132 150 -33 -79 -1169 -1169 167 -1169 -1169 202 -1169 -53 -58 -1169 133 -1169 -1169 202 -1169 -1169 -1169 -1169 191 -1169 -58 179 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 2.7e-002 0.000000 0.000000 0.000000 1.000000 0.000000 0.090909 0.696970 0.212121 0.151515 0.000000 0.000000 0.848485 0.000000 0.000000 1.000000 0.000000 0.181818 0.151515 0.000000 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.151515 0.848485 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-3 regular expression -------------------------------------------------------------------------------- T[GT]TGTGTG -------------------------------------------------------------------------------- Time 17.16 secs. ******************************************************************************** ******************************************************************************** MOTIF ARAARAGA MEME-4 width = 8 sites = 63 llr = 456 E-value = 5.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARAARAGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 76974a2a pos.-specific C ::1::::: probability G 34:36:8: matrix T :::::::: bits 2.1 1.9 * 1.7 * * 1.5 * * Relative 1.3 * *** Entropy 1.1 ******** (10.4 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAAGAGA consensus GG GA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAARAGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:11638737-11638817 27 1.96e-05 GATGAGGGAA AAAAGAGA GGGCTCTTCA chrIII:8683828-8683908 70 1.96e-05 TAACCGTTCG AAAAGAGA AGT chrV:8518469-8518549 4 1.96e-05 AGA AAAAGAGA ATTAAAAATG chrV:7847322-7847402 11 1.96e-05 AAGAAGACTA AAAAGAGA GTATTGGGTG chrIII:4505931-4506011 24 1.96e-05 TGGAGAGGAA AAAAGAGA CGCTGTGAGA chrIV:6064815-6064895 47 1.96e-05 CTTGAAGCAA AAAAGAGA AGAACTACAG chrV:285154-285234 28 5.88e-05 GAGCATCAGG AAAAAAGA GCACGAACTC chrV:6516839-6516919 16 5.88e-05 TGACGTGAAC AGAAGAGA CTATTGGCGC chrI:10030107-10030187 36 5.88e-05 TGGACAGAAA AAAAAAGA ATTCTTAGCA chrII:14605811-14605891 6 5.88e-05 TGAGA AAAAAAGA AGACGTATGG chrI:10866683-10866763 11 5.88e-05 AGAGCGTATT AAAAAAGA AGAGAAGAAA chrII:15042964-15043044 61 5.88e-05 CACTAGAATG AGAAGAGA TCAAGGACCA chrV:11075753-11075833 50 5.88e-05 CAATGGACAG AAAAAAGA TGAGAGGGGA chrV:7112581-7112661 20 5.88e-05 AAAAAAATGG AGAAGAGA ATGGTGAAGT chrIV:8071111-8071191 16 5.88e-05 CAACAACAAC AGAAGAGA AGAAAATAAC chrI:4010605-4010685 72 5.88e-05 AAGATGGACA AAAAAAGA A chrX:2265215-2265295 63 5.88e-05 ACTTCACCCA AAAAAAGA GCGATACTTG chrV:9063071-9063151 4 9.56e-05 AGT GAAAGAGA AACGGAGACA chrIV:17279303-17279383 36 9.56e-05 AGTTGAGTAC AAAGGAGA GAACAAGATC chrIII:352169-352249 34 9.56e-05 TAGGGAAGTG AAAGGAGA AAATTGAAGG chrI:4915028-4915108 20 1.15e-04 GGCAGATGAA AGAAAAGA GCATTGTTTG chrX:4066605-4066685 33 1.15e-04 AATAAAAGAA AGAAAAGA ACAAGCAATT chrX:15342297-15342377 13 1.89e-04 CGGAGAGGGA GAAAAAGA GCTGATGAGG chrX:3541022-3541102 61 1.89e-04 ATTGCCGGTC AGAGGAGA CAGCCAGGAA chrIII:8286123-8286203 20 1.89e-04 TGTGTGGTCA AAAGAAGA AGAGCATGAG chrIV:13079313-13079393 54 1.89e-04 ACAGTCTTCA AGAGGAGA CAAGACGCAG chrV:8801300-8801380 21 1.89e-04 AATTGAGACA GAAAAAGA ACCGAGAAGA chrI:5034436-5034516 1 1.89e-04 . GAAAAAGA AAACTGGATT chrI:11520472-11520552 70 1.89e-04 TAGCAGAAAG AAAGAAGA AGA chrIII:7711064-7711144 54 1.89e-04 GCCACTGCAG GGAAGAGA GAAAGTGGGC chrIII:6316819-6316899 7 1.89e-04 GTAAAA GGAAGAGA AAAACGATGA chrX:11240907-11240987 73 1.89e-04 CCATTCATTG GAAAAAGA chrV:15072822-15072902 54 1.89e-04 CAGCAGCAGC AGAGGAGA GGGTACTTAA chrII:6828446-6828526 45 2.06e-04 ATGGTTCGGT GAAGGAGA ATAAGAAAAC chrIV:4007799-4007879 66 2.06e-04 TGCTCGAGTT gaaggaga agacgaa chrII:9311883-9311963 57 2.64e-04 TGTTGGAAGC AGAGAAGA GGATTAGGCG chrX:4388397-4388477 63 2.98e-04 GGCTGGAAAT GGAGGAGA ACGGAAAAGG chrX:13220682-13220762 35 2.98e-04 GAACCGGCTT GAAGAAGA GTCTCGCGAA chrV:9704592-9704672 60 2.98e-04 TCGTGAAAGT GAAGAAGA CGTGCCATTC chrX:8476511-8476591 20 2.98e-04 GCGGGTagaa gaagaaga tgaagaagGG chrX:16040412-16040492 56 3.57e-04 CAGCGAAAAC AGAAGAAA CCGAGTAGTT chrV:14368508-14368588 73 3.57e-04 CCTTGTTCAG AACAGAGA chrII:5275155-5275235 19 3.57e-04 GGCCCCCGCA AAAAAAAA CTTGAGAGGT chrIII:6289462-6289542 38 3.57e-04 AAAAGTGACG AACagaga gagagagcga chrX:6052880-6052960 5 3.96e-04 ACCA AAAGGAAA CGGAAACCTC chrX:8160253-8160333 69 3.96e-04 CACGAGGCAA GAAAGAAA GGGG chrX:4397634-4397714 73 3.96e-04 CTTTTCATTG GAAAGAAA chrIII:4222630-4222710 39 4.13e-04 ATCGCGTGAC GGAGAAGA CAGGGGACGA chrX:11472029-11472109 9 4.68e-04 AGAGTACG AGAAAAAA TTGAAGTGTA chrX:4939141-4939221 35 4.68e-04 CCCGAGAAGC AGCAGAGA GACGCTCCTC chrIV:11715285-11715365 19 4.68e-04 TTTATTCGCA AGAAAAAA GGATTAGTGA chrIV:4026085-4026165 21 5.78e-04 CCAAGAGGCA GACAGAGA CCCGGGGGGG chrX:14549757-14549837 59 5.78e-04 TCGTATTGGG GGAAGAAA TAGAAATGTG chrI:10099234-10099314 26 5.78e-04 AATATACAGC GGAAGAAA GTCATGTGAC chrI:7712836-7712916 64 5.78e-04 ACCGCTCGGT AGAGGAAA GCACACTCT chrX:11811558-11811638 15 5.78e-04 AGGGCAAGTG AACGGAGA CGGGGAGGTG chrX:2368580-2368660 28 5.97e-04 GTGCGGGTTG AAGAGAGA CAGACGTCAC chrX:15340977-15341057 71 5.97e-04 GCTCTGCCCC Aagagaga ga chrV:10672791-10672871 69 5.97e-04 GTGTTTTTTG AAGAGAGA AGGT chrIV:6062292-6062372 60 6.15e-04 CTCAACTAGT GAAGGAAA GAGTATGGGA chrX:8016075-8016155 28 6.32e-04 CGGCTAGTCG AGCAAAGA GTCACGCGGA chrII:10583852-10583932 1 7.34e-04 . AGAGAAAA GCACGCATCA chrIV:8171538-8171618 32 1.10e-03 CTCATTTTGT AAAAGAGG CGCGCATCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAARAGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:11638737-11638817 2e-05 26_[+4]_46 chrIII:8683828-8683908 2e-05 69_[+4]_3 chrV:8518469-8518549 2e-05 3_[+4]_69 chrV:7847322-7847402 2e-05 10_[+4]_62 chrIII:4505931-4506011 2e-05 23_[+4]_49 chrIV:6064815-6064895 2e-05 46_[+4]_26 chrV:285154-285234 5.9e-05 27_[+4]_45 chrV:6516839-6516919 5.9e-05 15_[+4]_57 chrI:10030107-10030187 5.9e-05 35_[+4]_37 chrII:14605811-14605891 5.9e-05 5_[+4]_67 chrI:10866683-10866763 5.9e-05 10_[+4]_62 chrII:15042964-15043044 5.9e-05 60_[+4]_12 chrV:11075753-11075833 5.9e-05 49_[+4]_23 chrV:7112581-7112661 5.9e-05 19_[+4]_53 chrIV:8071111-8071191 5.9e-05 15_[+4]_57 chrI:4010605-4010685 5.9e-05 71_[+4]_1 chrX:2265215-2265295 5.9e-05 62_[+4]_10 chrV:9063071-9063151 9.6e-05 3_[+4]_69 chrIV:17279303-17279383 9.6e-05 35_[+4]_37 chrIII:352169-352249 9.6e-05 33_[+4]_39 chrI:4915028-4915108 0.00012 19_[+4]_53 chrX:4066605-4066685 0.00012 32_[+4]_40 chrX:15342297-15342377 0.00019 12_[+4]_60 chrX:3541022-3541102 0.00019 60_[+4]_12 chrIII:8286123-8286203 0.00019 19_[+4]_53 chrIV:13079313-13079393 0.00019 53_[+4]_19 chrV:8801300-8801380 0.00019 20_[+4]_52 chrI:5034436-5034516 0.00019 [+4]_72 chrI:11520472-11520552 0.00019 69_[+4]_3 chrIII:7711064-7711144 0.00019 53_[+4]_19 chrIII:6316819-6316899 0.00019 6_[+4]_66 chrX:11240907-11240987 0.00019 72_[+4] chrV:15072822-15072902 0.00019 53_[+4]_19 chrII:6828446-6828526 0.00021 44_[+4]_28 chrIV:4007799-4007879 0.00021 65_[+4]_7 chrII:9311883-9311963 0.00026 56_[+4]_16 chrX:4388397-4388477 0.0003 62_[+4]_10 chrX:13220682-13220762 0.0003 34_[+4]_38 chrV:9704592-9704672 0.0003 59_[+4]_13 chrX:8476511-8476591 0.0003 19_[+4]_53 chrX:16040412-16040492 0.00036 55_[+4]_17 chrV:14368508-14368588 0.00036 72_[+4] chrII:5275155-5275235 0.00036 18_[+4]_54 chrIII:6289462-6289542 0.00036 37_[+4]_35 chrX:6052880-6052960 0.0004 4_[+4]_68 chrX:8160253-8160333 0.0004 68_[+4]_4 chrX:4397634-4397714 0.0004 72_[+4] chrIII:4222630-4222710 0.00041 38_[+4]_34 chrX:11472029-11472109 0.00047 8_[+4]_64 chrX:4939141-4939221 0.00047 34_[+4]_38 chrIV:11715285-11715365 0.00047 18_[+4]_54 chrIV:4026085-4026165 0.00058 20_[+4]_52 chrX:14549757-14549837 0.00058 58_[+4]_14 chrI:10099234-10099314 0.00058 25_[+4]_47 chrI:7712836-7712916 0.00058 63_[+4]_9 chrX:11811558-11811638 0.00058 14_[+4]_58 chrX:2368580-2368660 0.0006 27_[+4]_45 chrX:15340977-15341057 0.0006 70_[+4]_2 chrV:10672791-10672871 0.0006 68_[+4]_4 chrIV:6062292-6062372 0.00061 59_[+4]_13 chrX:8016075-8016155 0.00063 27_[+4]_45 chrII:10583852-10583932 0.00073 [+4]_72 chrIV:8171538-8171618 0.0011 31_[+4]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAARAGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARAARAGA width=8 seqs=63 chrV:11638737-11638817 ( 27) AAAAGAGA 1 chrIII:8683828-8683908 ( 70) AAAAGAGA 1 chrV:8518469-8518549 ( 4) AAAAGAGA 1 chrV:7847322-7847402 ( 11) AAAAGAGA 1 chrIII:4505931-4506011 ( 24) AAAAGAGA 1 chrIV:6064815-6064895 ( 47) AAAAGAGA 1 chrV:285154-285234 ( 28) AAAAAAGA 1 chrV:6516839-6516919 ( 16) AGAAGAGA 1 chrI:10030107-10030187 ( 36) AAAAAAGA 1 chrII:14605811-14605891 ( 6) AAAAAAGA 1 chrI:10866683-10866763 ( 11) AAAAAAGA 1 chrII:15042964-15043044 ( 61) AGAAGAGA 1 chrV:11075753-11075833 ( 50) AAAAAAGA 1 chrV:7112581-7112661 ( 20) AGAAGAGA 1 chrIV:8071111-8071191 ( 16) AGAAGAGA 1 chrI:4010605-4010685 ( 72) AAAAAAGA 1 chrX:2265215-2265295 ( 63) AAAAAAGA 1 chrV:9063071-9063151 ( 4) GAAAGAGA 1 chrIV:17279303-17279383 ( 36) AAAGGAGA 1 chrIII:352169-352249 ( 34) AAAGGAGA 1 chrI:4915028-4915108 ( 20) AGAAAAGA 1 chrX:4066605-4066685 ( 33) AGAAAAGA 1 chrX:15342297-15342377 ( 13) GAAAAAGA 1 chrX:3541022-3541102 ( 61) AGAGGAGA 1 chrIII:8286123-8286203 ( 20) AAAGAAGA 1 chrIV:13079313-13079393 ( 54) AGAGGAGA 1 chrV:8801300-8801380 ( 21) GAAAAAGA 1 chrI:5034436-5034516 ( 1) GAAAAAGA 1 chrI:11520472-11520552 ( 70) AAAGAAGA 1 chrIII:7711064-7711144 ( 54) GGAAGAGA 1 chrIII:6316819-6316899 ( 7) GGAAGAGA 1 chrX:11240907-11240987 ( 73) GAAAAAGA 1 chrV:15072822-15072902 ( 54) AGAGGAGA 1 chrII:6828446-6828526 ( 45) GAAGGAGA 1 chrIV:4007799-4007879 ( 66) GAAGGAGA 1 chrII:9311883-9311963 ( 57) AGAGAAGA 1 chrX:4388397-4388477 ( 63) GGAGGAGA 1 chrX:13220682-13220762 ( 35) GAAGAAGA 1 chrV:9704592-9704672 ( 60) GAAGAAGA 1 chrX:8476511-8476591 ( 20) GAAGAAGA 1 chrX:16040412-16040492 ( 56) AGAAGAAA 1 chrV:14368508-14368588 ( 73) AACAGAGA 1 chrII:5275155-5275235 ( 19) AAAAAAAA 1 chrIII:6289462-6289542 ( 38) AACAGAGA 1 chrX:6052880-6052960 ( 5) AAAGGAAA 1 chrX:8160253-8160333 ( 69) GAAAGAAA 1 chrX:4397634-4397714 ( 73) GAAAGAAA 1 chrIII:4222630-4222710 ( 39) GGAGAAGA 1 chrX:11472029-11472109 ( 9) AGAAAAAA 1 chrX:4939141-4939221 ( 35) AGCAGAGA 1 chrIV:11715285-11715365 ( 19) AGAAAAAA 1 chrIV:4026085-4026165 ( 21) GACAGAGA 1 chrX:14549757-14549837 ( 59) GGAAGAAA 1 chrI:10099234-10099314 ( 26) GGAAGAAA 1 chrI:7712836-7712916 ( 64) AGAGGAAA 1 chrX:11811558-11811638 ( 15) AACGGAGA 1 chrX:2368580-2368660 ( 28) AAGAGAGA 1 chrX:15340977-15341057 ( 71) AAGAGAGA 1 chrV:10672791-10672871 ( 69) AAGAGAGA 1 chrIV:6062292-6062372 ( 60) GAAGGAAA 1 chrX:8016075-8016155 ( 28) AGCAAAGA 1 chrII:10583852-10583932 ( 1) AGAGAAAA 1 chrIV:8171538-8171618 ( 32) AAAAGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAARAGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.48684 E= 5.1e-001 138 -1262 37 -1262 128 -1262 57 -1262 171 -125 -237 -1262 138 -1262 37 -1262 60 -1262 130 -1262 193 -1262 -1262 -1262 -46 -1262 172 -1262 191 -1262 -395 -1262 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAARAGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 63 E= 5.1e-001 0.682540 0.000000 0.317460 0.000000 0.634921 0.000000 0.365079 0.000000 0.857143 0.095238 0.047619 0.000000 0.682540 0.000000 0.317460 0.000000 0.396825 0.000000 0.603175 0.000000 1.000000 0.000000 0.000000 0.000000 0.190476 0.000000 0.809524 0.000000 0.984127 0.000000 0.015873 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARAARAGA MEME-4 regular expression -------------------------------------------------------------------------------- [AG][AG]A[AG][GA]AGA -------------------------------------------------------------------------------- Time 20.67 secs. ******************************************************************************** ******************************************************************************** MOTIF TSAAGWGG MEME-5 width = 8 sites = 50 llr = 381 E-value = 1.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TSAAGWGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A 2:aa141: pos.-specific C :4:::::3 probability G :6::9:96 matrix T 8::::6:1 bits 2.1 1.9 ** 1.7 *** 1.5 *** * Relative 1.3 * *** * Entropy 1.1 ***** * (11.0 bits) 0.9 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGAAGTGG consensus C A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSAAGWGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:6052880-6052960 28 1.78e-05 ACCTCTCATC TGAAGTGG TATAGTGCAC chrIII:6316819-6316899 46 1.78e-05 TTGAAAGTTT TGAAGTGG TTTTTCTTGA chrV:8217742-8217822 9 1.78e-05 GAAACGTG TGAAGTGG AATTCAAGAG chrX:3270832-3270912 51 1.78e-05 GCGAGACAAG TGAAGTGG TTTGGAGCAA chrIII:9271021-9271101 4 1.78e-05 ATT TGAAGTGG ATGATGCTCA chrII:6115411-6115491 57 1.78e-05 ATGAAGGTTT TGAAGTGG GAAGTGGAAG chrI:10030107-10030187 21 5.16e-05 ACCTTTTATG TCAAGTGG ACAGAAAAAA chrIV:11916174-11916254 34 5.16e-05 CAATTGCCAT TCAAGTGG TCACATTGTT chrI:11591000-11591080 40 5.16e-05 CACGTCTTCA TGAAGAGG GGTGCGCGAG chrIV:17472264-17472344 1 5.16e-05 . TGAAGAGG TCAGGCGACG chrI:7397644-7397724 52 5.16e-05 GTTCTGAAGA TGAAGAGG ATCAGTCAAA chrIII:9968525-9968605 66 5.16e-05 CCCGTGCTCA TCAAGTGG GTCTCTC chrV:7112581-7112661 32 6.80e-05 AAGAGAATGG TGAAGTGC GAAGTGGGTG chrV:1493056-1493136 5 6.80e-05 CTAA TGAAGTGC CAATTCATTT chrV:287381-287461 38 1.15e-04 CCGCCCGATT TCAAGTGC TTTTCAAGTT chrV:8699747-8699827 31 1.15e-04 GAGTGGTGCT TGAAGAGC TGAATTCAGT chrX:11478829-11478909 36 1.15e-04 ATTGAAATGC TGAAGAGC GCGACGAGTC chrIV:5988807-5988887 52 1.15e-04 AATACAGCGA TGAAGAGC TTGCTCAAGA chrII:5953348-5953428 63 1.15e-04 AAGGATGCCC TGAAGAGC AGGAAATTAG chrX:4230078-4230158 55 1.15e-04 ACACTCAAAG TGAAGAGC TCGCAAAGCC chrV:10672791-10672871 2 1.15e-04 T TCAAGTGC ATCAGCGGCG chrV:285154-285234 14 1.30e-04 AAGGTTCACC TCAAGAGC ATCAGGAAAA chrII:7964797-7964877 55 1.30e-04 TCTCCCTTTT TCAAGAGC CTAAAAAGAC chrX:4939141-4939221 67 1.30e-04 CTCGCACTTT TCAAGAGC ATCTAA chrV:7893021-7893101 56 1.30e-04 GTACTTGTCG TCAAGAGC ACTTCTTCCG chrX:11472029-11472109 18 1.49e-04 GAGAAAAAAT TGAAGTGT ATTTATGTGA chrI:5034436-5034516 55 1.67e-04 GTTTTCATTG AGAAGTGG CATGTGACTG chrX:3825661-3825741 8 1.67e-04 CATTTTG AGAAGTGG TAGAAATCAG chrV:6341190-6341270 63 1.67e-04 CCATGCCTTA AGAAGTGG TCGAGTTGAG chrIII:3673016-3673096 72 1.67e-04 AATAAAATTG AGAAGTGG T chrI:5011171-5011251 35 2.22e-04 TGAAGTAATT TCAAGTGT TGTTTTGATA chrI:7369322-7369402 16 2.22e-04 GAAGTTGTTG TGAAGAGT GCCCTCGTTG chrIV:6062292-6062372 1 2.22e-04 . TCAAGTGT TGTTATGTGT chrIV:11715285-11715365 34 2.22e-04 AAAGGATTAG TGAAGTAG TGGAAGGCTC chrIII:5951765-5951845 53 2.22e-04 CCTTTTCAGT TCAAGTGT TTCATGTCCA chrX:16002616-16002696 69 2.22e-04 CCGGTAAAAT TCAAGTGT TATT chrII:4036683-4036763 17 2.22e-04 AGCTCAAAGG TGAAGTAG TACTCTTCTC chrIII:6695297-6695377 70 2.56e-04 CCGGAGAGCA AGAAGAGG AGG chrX:16324366-16324446 29 2.56e-04 GAGTTTGGTA AGAAGAGG GAGGCGGCAA chrIII:1787385-1787465 31 2.56e-04 GGGCTCTCAG ACAAGTGG TCTGTGAGTG chrX:9298024-9298104 6 3.25e-04 TGTTC TCAAGTAG CTATGACCCA chrIII:6348783-6348863 63 3.25e-04 ACGGAAGCAT TGAAGAAG GAATGCACCA chrV:8773928-8774008 14 3.25e-04 CACATAATTT TCAAGAGT TGTTTCGGTC chrX:8476511-8476591 28 3.25e-04 aagaagaaga tgaagaag GGGTCTCTTC chrX:4397634-4397714 36 3.25e-04 CCTCAACGTT TCAAGTAG CGGGTTTGAT chrV:13396585-13396665 44 4.06e-04 GCATCTTTCG ACAAGTGC GGGAAGGGGA chrII:9311883-9311963 5 4.06e-04 AATT TCAAGAAG CGGGTCCTTG chrX:12629458-12629538 43 4.58e-04 GAGGGTCCAC TGAAATGG GAAGAAGGGA chrII:14605811-14605891 70 4.58e-04 GGAAACTGGA TGAAATGG TTT chrIV:6061426-6061506 66 5.44e-04 TTCAACGTCT TGAAAAGG GGGAATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSAAGWGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6052880-6052960 1.8e-05 27_[+5]_45 chrIII:6316819-6316899 1.8e-05 45_[+5]_27 chrV:8217742-8217822 1.8e-05 8_[+5]_64 chrX:3270832-3270912 1.8e-05 50_[+5]_22 chrIII:9271021-9271101 1.8e-05 3_[+5]_69 chrII:6115411-6115491 1.8e-05 56_[+5]_16 chrI:10030107-10030187 5.2e-05 20_[+5]_52 chrIV:11916174-11916254 5.2e-05 33_[+5]_39 chrI:11591000-11591080 5.2e-05 39_[+5]_33 chrIV:17472264-17472344 5.2e-05 [+5]_72 chrI:7397644-7397724 5.2e-05 51_[+5]_21 chrIII:9968525-9968605 5.2e-05 65_[+5]_7 chrV:7112581-7112661 6.8e-05 31_[+5]_41 chrV:1493056-1493136 6.8e-05 4_[+5]_68 chrV:287381-287461 0.00012 37_[+5]_35 chrV:8699747-8699827 0.00012 30_[+5]_42 chrX:11478829-11478909 0.00012 35_[+5]_37 chrIV:5988807-5988887 0.00012 51_[+5]_21 chrII:5953348-5953428 0.00012 62_[+5]_10 chrX:4230078-4230158 0.00012 54_[+5]_18 chrV:10672791-10672871 0.00012 1_[+5]_71 chrV:285154-285234 0.00013 13_[+5]_59 chrII:7964797-7964877 0.00013 54_[+5]_18 chrX:4939141-4939221 0.00013 66_[+5]_6 chrV:7893021-7893101 0.00013 55_[+5]_17 chrX:11472029-11472109 0.00015 17_[+5]_55 chrI:5034436-5034516 0.00017 54_[+5]_18 chrX:3825661-3825741 0.00017 7_[+5]_65 chrV:6341190-6341270 0.00017 62_[+5]_10 chrIII:3673016-3673096 0.00017 71_[+5]_1 chrI:5011171-5011251 0.00022 34_[+5]_38 chrI:7369322-7369402 0.00022 15_[+5]_57 chrIV:6062292-6062372 0.00022 [+5]_72 chrIV:11715285-11715365 0.00022 33_[+5]_39 chrIII:5951765-5951845 0.00022 52_[+5]_20 chrX:16002616-16002696 0.00022 68_[+5]_4 chrII:4036683-4036763 0.00022 16_[+5]_56 chrIII:6695297-6695377 0.00026 69_[+5]_3 chrX:16324366-16324446 0.00026 28_[+5]_44 chrIII:1787385-1787465 0.00026 30_[+5]_42 chrX:9298024-9298104 0.00033 5_[+5]_67 chrIII:6348783-6348863 0.00033 62_[+5]_10 chrV:8773928-8774008 0.00033 13_[+5]_59 chrX:8476511-8476591 0.00033 27_[+5]_45 chrX:4397634-4397714 0.00033 35_[+5]_37 chrV:13396585-13396665 0.00041 43_[+5]_29 chrII:9311883-9311963 0.00041 4_[+5]_68 chrX:12629458-12629538 0.00046 42_[+5]_30 chrII:14605811-14605891 0.00046 69_[+5]_3 chrIV:6061426-6061506 0.00054 65_[+5]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSAAGWGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TSAAGWGG width=8 seqs=50 chrX:6052880-6052960 ( 28) TGAAGTGG 1 chrIII:6316819-6316899 ( 46) TGAAGTGG 1 chrV:8217742-8217822 ( 9) TGAAGTGG 1 chrX:3270832-3270912 ( 51) TGAAGTGG 1 chrIII:9271021-9271101 ( 4) TGAAGTGG 1 chrII:6115411-6115491 ( 57) TGAAGTGG 1 chrI:10030107-10030187 ( 21) TCAAGTGG 1 chrIV:11916174-11916254 ( 34) TCAAGTGG 1 chrI:11591000-11591080 ( 40) TGAAGAGG 1 chrIV:17472264-17472344 ( 1) TGAAGAGG 1 chrI:7397644-7397724 ( 52) TGAAGAGG 1 chrIII:9968525-9968605 ( 66) TCAAGTGG 1 chrV:7112581-7112661 ( 32) TGAAGTGC 1 chrV:1493056-1493136 ( 5) TGAAGTGC 1 chrV:287381-287461 ( 38) TCAAGTGC 1 chrV:8699747-8699827 ( 31) TGAAGAGC 1 chrX:11478829-11478909 ( 36) TGAAGAGC 1 chrIV:5988807-5988887 ( 52) TGAAGAGC 1 chrII:5953348-5953428 ( 63) TGAAGAGC 1 chrX:4230078-4230158 ( 55) TGAAGAGC 1 chrV:10672791-10672871 ( 2) TCAAGTGC 1 chrV:285154-285234 ( 14) TCAAGAGC 1 chrII:7964797-7964877 ( 55) TCAAGAGC 1 chrX:4939141-4939221 ( 67) TCAAGAGC 1 chrV:7893021-7893101 ( 56) TCAAGAGC 1 chrX:11472029-11472109 ( 18) TGAAGTGT 1 chrI:5034436-5034516 ( 55) AGAAGTGG 1 chrX:3825661-3825741 ( 8) AGAAGTGG 1 chrV:6341190-6341270 ( 63) AGAAGTGG 1 chrIII:3673016-3673096 ( 72) AGAAGTGG 1 chrI:5011171-5011251 ( 35) TCAAGTGT 1 chrI:7369322-7369402 ( 16) TGAAGAGT 1 chrIV:6062292-6062372 ( 1) TCAAGTGT 1 chrIV:11715285-11715365 ( 34) TGAAGTAG 1 chrIII:5951765-5951845 ( 53) TCAAGTGT 1 chrX:16002616-16002696 ( 69) TCAAGTGT 1 chrII:4036683-4036763 ( 17) TGAAGTAG 1 chrIII:6695297-6695377 ( 70) AGAAGAGG 1 chrX:16324366-16324446 ( 29) AGAAGAGG 1 chrIII:1787385-1787465 ( 31) ACAAGTGG 1 chrX:9298024-9298104 ( 6) TCAAGTAG 1 chrIII:6348783-6348863 ( 63) TGAAGAAG 1 chrV:8773928-8774008 ( 14) TCAAGAGT 1 chrX:8476511-8476591 ( 28) TGAAGAAG 1 chrX:4397634-4397714 ( 36) TCAAGTAG 1 chrV:13396585-13396665 ( 44) ACAAGTGC 1 chrII:9311883-9311963 ( 5) TCAAGAAG 1 chrX:12629458-12629538 ( 43) TGAAATGG 1 chrII:14605811-14605891 ( 70) TGAAATGG 1 chrIV:6061426-6061506 ( 66) TGAAAAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSAAGWGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.99899 E= 1.1e-001 -71 -1229 -1229 166 -1229 75 134 -1229 193 -1229 -1229 -1229 193 -1229 -1229 -1229 -213 -1229 194 -1229 61 -1229 -1229 117 -90 -1229 181 -1229 -1229 31 124 -93 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSAAGWGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 1.1e-001 0.160000 0.000000 0.000000 0.840000 0.000000 0.380000 0.620000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.060000 0.000000 0.940000 0.000000 0.400000 0.000000 0.000000 0.600000 0.140000 0.000000 0.860000 0.000000 0.000000 0.280000 0.580000 0.140000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSAAGWGG MEME-5 regular expression -------------------------------------------------------------------------------- T[GC]AAG[TA]G[GC] -------------------------------------------------------------------------------- Time 24.07 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:4397634-4397714 5.60e-03 80 chrX:2265215-2265295 3.57e-03 51_[+2(8.59e-05)]_3_[+4(5.88e-05)]_\ 10 chrIII:9968525-9968605 1.82e-03 65_[+5(5.16e-05)]_7 chrX:4066605-4066685 5.16e-04 49_[+3(3.82e-05)]_23 chrX:1185543-1185623 1.91e-02 67_[+3(1.83e-05)]_5 chrX:17327414-17327494 2.09e-01 80 chrIII:4659629-4659709 5.50e-02 80 chrIV:6064815-6064895 8.18e-05 34_[+2(1.60e-05)]_4_[+4(1.96e-05)]_\ 26 chrV:7893021-7893101 3.87e-02 80 chrX:4880193-4880273 4.99e-02 63_[+2(7.33e-05)]_9 chrI:11670294-11670374 7.07e-01 80 chrX:11758907-11758987 2.65e-02 [+2(3.07e-05)]_72 chrX:5027967-5028047 1.89e-02 18_[+2(4.57e-05)]_54 chrV:10672791-10672871 4.18e-03 80 chrII:4036683-4036763 1.62e-03 80 chrX:7467658-7467738 4.73e-02 53_[+2(8.59e-05)]_19 chrX:16002616-16002696 1.19e-01 80 chrII:6115411-6115491 2.94e-02 56_[+5(1.78e-05)]_16 chrIV:8171538-8171618 1.06e-01 80 chrIII:7300915-7300995 2.95e-01 80 chrIII:3673016-3673096 6.67e-06 21_[+1(1.54e-05)]_21_[+2(4.57e-05)]_\ 22 chrIII:5951765-5951845 4.48e-04 68_[+2(4.57e-05)]_4 chrX:4230078-4230158 6.18e-02 80 chrII:9311883-9311963 1.43e-03 80 chrX:11811558-11811638 7.78e-02 80 chrX:16772295-16772375 3.51e-03 33_[+3(1.83e-05)]_2_[+1(9.07e-05)]_\ 29 chrII:5953348-5953428 1.20e-03 37_[+1(7.26e-05)]_35 chrX:5988051-5988131 4.03e-01 80 chrX:13735995-13736075 9.11e-01 80 chrI:4010605-4010685 3.50e-03 71_[+4(5.88e-05)]_1 chrIV:8071111-8071191 6.71e-02 15_[+4(5.88e-05)]_57 chrV:15072822-15072902 9.37e-02 80 chrX:5116344-5116424 8.78e-02 17_[+2(4.57e-05)]_55 chrIII:12942471-12942551 4.23e-01 80 chrX:17362705-17362785 4.44e-01 80 chrX:10554101-10554181 3.11e-01 80 chrX:1598194-1598274 2.22e-01 80 chrIV:11715285-11715365 1.19e-02 80 chrI:5400236-5400316 1.07e-01 80 chrI:7124461-7124541 5.26e-01 80 chrIV:5988807-5988887 2.31e-02 80 chrIII:352169-352249 8.50e-02 33_[+4(9.56e-05)]_39 chrIII:8973331-8973411 1.50e-02 80 chrX:4939141-4939221 6.78e-04 80 chrV:6341190-6341270 2.05e-01 80 chrIV:12198969-12199049 2.89e-02 59_[+1(1.54e-05)]_13 chrX:4404887-4404967 3.84e-02 80 chrV:7745998-7746078 3.33e-02 4_[+2(8.59e-05)]_68 chrV:1493056-1493136 8.46e-02 4_[+5(6.80e-05)]_68 chrV:4431491-4431571 4.05e-03 2_[+1(4.15e-05)]_[+1(4.15e-05)]_4_\ [+2(3.07e-05)]_50 chrX:11478829-11478909 7.31e-03 [+3(7.18e-05)]_72 chrII:6772624-6772704 4.75e-04 26_[+1(1.54e-05)]_46 chrIII:1787385-1787465 2.21e-02 40_[+3(7.18e-05)]_32 chrX:3342490-3342570 1.73e-01 57_[+1(9.07e-05)]_15 chrIV:15931340-15931420 9.84e-01 80 chrV:14948745-14948825 4.26e-02 80 chrI:13028563-13028643 1.38e-01 80 chrX:17562367-17562447 1.95e-01 80 chrV:7112581-7112661 5.40e-03 19_[+4(5.88e-05)]_4_[+5(6.80e-05)]_\ 41 chrII:3816431-3816511 8.53e-01 80 chrX:3903300-3903380 3.96e-01 80 chrV:8699747-8699827 7.24e-02 80 chrII:7981886-7981966 1.19e-01 12_[+1(9.07e-05)]_60 chrV:7982391-7982471 3.92e-01 80 chrV:287381-287461 6.34e-02 80 chrV:12811338-12811418 2.45e-01 80 chrI:7397644-7397724 1.04e-02 51_[+5(5.16e-05)]_21 chrIV:17472264-17472344 7.93e-02 [+5(5.16e-05)]_72 chrIV:5752928-5753008 1.40e-01 80 chrI:299769-299849 3.30e-02 80 chrV:11075753-11075833 8.77e-03 49_[+4(5.88e-05)]_23 chrI:7949627-7949707 1.46e-01 80 chrI:4915028-4915108 1.26e-02 80 chrI:7712836-7712916 7.52e-03 9_[+3(1.83e-05)]_15_[+3(1.83e-05)]_\ 40 chrIV:7550029-7550109 2.94e-01 80 chrX:8476511-8476591 8.79e-04 80 chrX:4297542-4297622 2.01e-01 80 chrIII:10358906-10358986 6.42e-02 80 chrV:11531124-11531204 4.26e-01 80 chrV:8773928-8774008 2.22e-01 80 chrIV:8006539-8006619 4.04e-02 68_[+2(8.59e-05)]_4 chrX:13147233-13147313 9.04e-01 80 chrV:15075041-15075121 2.54e-02 30_[+1(1.54e-05)]_42 chrIV:11008466-11008546 2.35e-02 30_[+1(1.54e-05)]_42 chrII:13788960-13789040 1.93e-02 80 chrX:16324366-16324446 2.66e-02 80 chrII:7886735-7886815 1.47e-01 80 chrIII:9509893-9509973 4.59e-02 80 chrII:1310279-1310359 1.11e-01 80 chrV:12314591-12314671 1.86e-02 19_[+1(1.54e-05)]_53 chrX:15668285-15668365 2.56e-01 23_[+2(8.59e-05)]_49 chrII:7985169-7985249 7.30e-02 71_[+1(4.15e-05)]_1 chrV:12245077-12245157 2.42e-02 80 chrII:10583852-10583932 1.04e-02 16_[+2(5.95e-05)]_56 chrV:9704592-9704672 3.13e-04 5_[+1(4.15e-05)]_67 chrIII:2932398-2932478 9.79e-01 80 chrIV:2772458-2772538 2.57e-01 80 chrX:5875640-5875720 2.96e-02 53_[+2(4.57e-05)]_19 chrV:9549577-9549657 6.11e-03 80 chrII:15042964-15043044 5.05e-03 60_[+4(5.88e-05)]_12 chrX:3825661-3825741 1.22e-01 80 chrX:12204521-12204601 3.09e-01 80 chrV:20417989-20418069 4.01e-02 1_[+1(4.15e-05)]_71 chrX:8379286-8379366 3.55e-01 80 chrIII:2935224-2935304 3.06e-01 80 chrIII:12013177-12013257 4.68e-02 38_[+2(7.33e-05)]_34 chrII:2220040-2220120 1.82e-01 80 chrX:13220682-13220762 5.41e-03 80 chrII:5049483-5049563 2.38e-03 80 chrX:4699794-4699874 8.62e-01 80 chrI:10099234-10099314 4.40e-01 80 chrIII:9271021-9271101 1.35e-03 3_[+5(1.78e-05)]_16_[+5(1.78e-05)]_\ 45 chrII:3428304-3428384 1.80e-01 80 chrV:10041646-10041726 1.75e-03 56_[+3(1.83e-05)]_16 chrIV:6062292-6062372 1.14e-02 80 chrII:1086671-1086751 6.41e-03 80 chrIV:6005902-6005982 6.48e-01 80 chrI:6334478-6334558 2.26e-03 6_[+2(1.60e-05)]_66 chrI:10866683-10866763 1.10e-01 10_[+4(5.88e-05)]_62 chrIII:9665617-9665697 2.34e-01 80 chrX:6961371-6961451 6.01e-03 35_[+2(1.60e-05)]_37 chrI:4908216-4908296 1.17e-02 80 chrIV:17279303-17279383 1.35e-02 35_[+4(9.56e-05)]_18_[+4(5.88e-05)]_\ 11 chrX:10434042-10434122 1.58e-02 80 chrI:10765621-10765701 4.66e-02 71_[+3(3.82e-05)]_1 chrV:5967602-5967682 1.23e-02 31_[+2(3.07e-05)]_22_[+2(4.57e-05)]_\ 11 chrII:12261328-12261408 4.33e-03 80 chrII:14605811-14605891 2.93e-04 5_[+4(5.88e-05)]_20_[+2(4.57e-05)]_\ 39 chrIII:13718599-13718679 3.65e-02 80 chrV:9063071-9063151 1.25e-01 3_[+4(9.56e-05)]_69 chrV:13686706-13686786 8.12e-03 41_[+2(8.59e-05)]_31 chrIII:6348783-6348863 1.84e-01 80 chrX:3270832-3270912 3.36e-02 50_[+5(1.78e-05)]_22 chrIII:4999061-4999141 3.54e-01 80 chrX:2321937-2322017 9.21e-02 80 chrV:13200795-13200875 6.35e-01 80 chrX:14238447-14238527 1.96e-01 80 chrIII:4505931-4506011 1.80e-02 23_[+4(1.96e-05)]_49 chrII:4606967-4607047 6.86e-04 14_[+1(9.07e-05)]_58 chrX:9668746-9668826 1.66e-01 80 chrIV:6061426-6061506 1.10e-02 80 chrX:8796819-8796899 1.00e+00 80 chrV:11076585-11076665 5.92e-01 80 chrIV:5666405-5666485 1.28e-01 80 chrV:8217742-8217822 7.11e-02 8_[+5(1.78e-05)]_64 chrX:8236128-8236208 3.54e-02 80 chrX:14911389-14911469 7.15e-02 80 chrX:12629458-12629538 2.18e-01 80 chrIII:7661270-7661350 1.24e-01 80 chrX:15362275-15362355 7.37e-01 80 chrIV:8922148-8922228 9.03e-01 80 chrIV:10192020-10192100 1.23e-02 80 chrI:2741161-2741241 4.27e-01 80 chrX:11472029-11472109 2.21e-03 30_[+3(7.18e-05)]_42 chrX:11240907-11240987 1.28e-01 80 chrX:4388397-4388477 6.97e-03 27_[+3(1.83e-05)]_[+3(1.83e-05)]_37 chrV:7847322-7847402 3.38e-02 10_[+4(1.96e-05)]_62 chrV:5520054-5520134 9.54e-01 80 chrX:12177022-12177102 1.09e-01 80 chrV:2603177-2603257 6.16e-01 80 chrIII:6316819-6316899 3.69e-05 45_[+5(1.78e-05)]_27 chrII:7964797-7964877 4.79e-04 32_[+1(1.54e-05)]_40 chrV:3717919-3717999 2.99e-01 80 chrI:11591000-11591080 2.78e-02 39_[+5(5.16e-05)]_33 chrI:7369322-7369402 2.53e-03 80 chrIV:7892192-7892272 1.39e-01 80 chrIII:6289462-6289542 1.46e-01 80 chrII:15212591-15212671 1.03e-01 80 chrIV:8002047-8002127 4.95e-03 18_[+2(4.57e-05)]_54 chrX:6735654-6735734 2.61e-02 80 chrX:4144452-4144532 2.62e-01 80 chrV:7804628-7804708 5.99e-01 80 chrIII:7711064-7711144 1.47e-01 80 chrV:1154861-1154941 2.12e-02 80 chrI:11520472-11520552 7.52e-05 17_[+3(1.83e-05)]_55 chrI:6810495-6810575 1.98e-01 80 chrIV:4007799-4007879 5.09e-03 47_[+1(4.15e-05)]_25 chrX:8160253-8160333 2.27e-01 80 chrX:5205746-5205826 2.06e-01 80 chrIV:4236895-4236975 3.58e-01 80 chrII:3951511-3951591 3.94e-03 56_[+1(4.15e-05)]_16 chrV:8518469-8518549 1.29e-02 3_[+4(1.96e-05)]_69 chrI:5034436-5034516 3.88e-03 80 chrIII:8683828-8683908 4.05e-02 69_[+4(1.96e-05)]_3 chrV:15512881-15512961 3.36e-02 31_[+2(3.07e-05)]_41 chrII:5275155-5275235 1.55e-01 80 chrI:4917716-4917796 3.62e-02 43_[+1(4.15e-05)]_29 chrV:14368508-14368588 1.47e-01 80 chrV:15515480-15515560 1.21e-01 80 chrX:15100755-15100835 1.67e-01 63_[+1(7.26e-05)]_9 chrX:3678763-3678843 4.85e-01 80 chrV:20776914-20776994 8.58e-02 80 chrIV:11110738-11110818 6.71e-01 80 chrIV:3521132-3521212 2.93e-01 80 chrIII:9700272-9700352 4.48e-01 80 chrIV:1168672-1168752 4.61e-02 58_[+1(4.15e-05)]_14 chrX:15877149-15877229 9.45e-01 80 chrIV:7903497-7903577 3.26e-02 80 chrIV:11916174-11916254 1.16e-03 33_[+5(5.16e-05)]_16_[+3(1.83e-05)]_\ 15 chrX:15279437-15279517 1.16e-02 35_[+1(4.15e-05)]_[+1(4.15e-05)]_\ [+1(4.15e-05)]_[+1(4.15e-05)]_[+1(4.15e-05)]_5 chrI:14524701-14524781 9.75e-02 80 chrII:9891489-9891569 7.42e-03 80 chrX:10767896-10767976 2.47e-01 80 chrX:11387035-11387115 1.50e-01 80 chrV:8801300-8801380 2.36e-02 80 chrX:8016075-8016155 4.00e-02 80 chrX:11469817-11469897 1.23e-02 36_[+3(1.83e-05)]_[+3(1.83e-05)]_\ [+3(1.83e-05)]_[+3(1.83e-05)]_12 chrIV:3872598-3872678 7.80e-01 80 chrIII:6695297-6695377 8.48e-04 17_[+3(1.83e-05)]_55 chrI:4494121-4494201 3.67e-01 80 chrIII:4125979-4126059 1.12e-02 80 chrX:9298024-9298104 4.31e-01 80 chrX:15340977-15341057 1.29e-01 80 chrV:11638737-11638817 3.55e-05 26_[+4(1.96e-05)]_19_[+3(1.83e-05)]_\ [+3(1.83e-05)]_[+3(1.83e-05)]_3 chrI:5011171-5011251 2.74e-03 1_[+1(4.15e-05)]_71 chrI:10030107-10030187 1.57e-03 20_[+5(5.16e-05)]_7_[+4(5.88e-05)]_\ 37 chrX:14549757-14549837 3.51e-03 80 chrV:13396585-13396665 1.72e-01 80 chrIV:7629093-7629173 1.59e-02 80 chrII:10174530-10174610 7.80e-02 80 chrIV:13079313-13079393 4.39e-04 50_[+5(8.41e-05)]_22 chrII:361630-361710 3.89e-02 10_[+2(4.57e-05)]_62 chrIV:5582436-5582516 7.17e-01 80 chrX:4982241-4982321 9.04e-01 80 chrIII:8286123-8286203 2.64e-04 47_[+1(7.26e-05)]_25 chrX:6052880-6052960 5.07e-03 27_[+5(1.78e-05)]_45 chrV:9545450-9545530 9.35e-01 80 chrX:3541022-3541102 1.12e-02 80 chrI:2687546-2687626 6.96e-01 80 chrII:6828446-6828526 2.21e-02 80 chrX:15042526-15042606 7.91e-03 41_[+2(4.57e-05)]_31 chrI:8759876-8759956 5.14e-01 80 chrX:2368580-2368660 9.72e-02 80 chrIII:4222630-4222710 3.00e-03 72_[+2(1.60e-05)] chrV:6516839-6516919 1.86e-03 15_[+4(5.88e-05)]_20_[+1(1.54e-05)]_\ 29 chrX:4899836-4899916 6.76e-02 80 chrX:16527882-16527962 2.31e-02 80 chrX:16040412-16040492 4.68e-01 80 chrII:8796603-8796683 2.84e-01 80 chrX:12656813-12656893 2.51e-01 80 chrII:9931184-9931264 2.77e-01 80 chrX:15342297-15342377 5.89e-03 39_[+3(7.18e-05)]_33 chrV:6359430-6359510 8.21e-04 62_[+3(1.83e-05)]_10 chrV:10862076-10862156 4.37e-01 80 chrIV:4026085-4026165 7.04e-02 80 chrV:7848438-7848518 2.14e-01 80 chrIII:8700739-8700819 8.69e-01 80 chrV:2681533-2681613 7.51e-01 80 chrIV:6907726-6907806 8.34e-01 80 chrV:285154-285234 8.51e-04 27_[+4(5.88e-05)]_45 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************