******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-24.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:265395-265475 1.0000 80 chrIII:3500002-3500082 1.0000 80 chrX:8156120-8156200 1.0000 80 chrV:265754-265834 1.0000 80 chrIII:3664384-3664464 1.0000 80 chrI:1175817-1175897 1.0000 80 chrX:12890297-12890377 1.0000 80 chrII:14408056-14408136 1.0000 80 chrII:7708749-7708829 1.0000 80 chrV:53459-53539 1.0000 80 chrII:14528393-14528473 1.0000 80 chrII:5836553-5836633 1.0000 80 chrIII:4426761-4426841 1.0000 80 chrIII:535378-535458 1.0000 80 chrI:14721617-14721697 1.0000 80 chrII:6248670-6248750 1.0000 80 chrII:4238060-4238140 1.0000 80 chrV:19636800-19636880 1.0000 80 chrIII:8768070-8768150 1.0000 80 chrV:13962133-13962213 1.0000 80 chrIII:3505255-3505335 1.0000 80 chrIV:3233094-3233174 1.0000 80 chrIII:640579-640659 1.0000 80 chrV:19372109-19372189 1.0000 80 chrIII:3175110-3175190 1.0000 80 chrX:8971600-8971680 1.0000 80 chrI:2410110-2410190 1.0000 80 chrV:4731553-4731633 1.0000 80 chrX:9296700-9296780 1.0000 80 chrIII:12368634-12368714 1.0000 80 chrIII:4568718-4568798 1.0000 80 chrX:12693273-12693353 1.0000 80 chrII:4046113-4046193 1.0000 80 chrI:1958522-1958602 1.0000 80 chrI:1575661-1575741 1.0000 80 chrII:9258281-9258361 1.0000 80 chrV:19522512-19522592 1.0000 80 chrII:12042262-12042342 1.0000 80 chrV:19723000-19723080 1.0000 80 chrIV:9477708-9477788 1.0000 80 chrV:18496744-18496824 1.0000 80 chrIV:5974272-5974352 1.0000 80 chrII:13481177-13481257 1.0000 80 chrIV:11026127-11026207 1.0000 80 chrI:1415944-1416024 1.0000 80 chrI:1823126-1823206 1.0000 80 chrI:11978705-11978785 1.0000 80 chrIII:1424541-1424621 1.0000 80 chrI:4001398-4001478 1.0000 80 chrIII:4171163-4171243 1.0000 80 chrI:8530120-8530200 1.0000 80 chrIII:445622-445702 1.0000 80 chrI:11323302-11323382 1.0000 80 chrIII:931612-931692 1.0000 80 chrIII:6133527-6133607 1.0000 80 chrIV:17087529-17087609 1.0000 80 chrV:9088861-9088941 1.0000 80 chrX:14115695-14115775 1.0000 80 chrII:6827407-6827487 1.0000 80 chrX:14804821-14804901 1.0000 80 chrIII:8106649-8106729 1.0000 80 chrI:11505511-11505591 1.0000 80 chrX:9637829-9637909 1.0000 80 chrIV:9191344-9191424 1.0000 80 chrX:5319300-5319380 1.0000 80 chrX:13264701-13264781 1.0000 80 chrX:8386217-8386297 1.0000 80 chrIII:11236903-11236983 1.0000 80 chrIII:5555077-5555157 1.0000 80 chrV:11113325-11113405 1.0000 80 chrIV:5334695-5334775 1.0000 80 chrV:3587798-3587878 1.0000 80 chrIII:11317242-11317322 1.0000 80 chrV:11239344-11239424 1.0000 80 chrIII:8650380-8650460 1.0000 80 chrII:8547104-8547184 1.0000 80 chrI:13310407-13310487 1.0000 80 chrV:7231026-7231106 1.0000 80 chrI:6136587-6136667 1.0000 80 chrI:6493925-6494005 1.0000 80 chrV:1003955-1004035 1.0000 80 chrII:14063094-14063174 1.0000 80 chrX:13121278-13121358 1.0000 80 chrII:9566236-9566316 1.0000 80 chrIII:3916863-3916943 1.0000 80 chrX:6371313-6371393 1.0000 80 chrV:6889022-6889102 1.0000 80 chrI:13160993-13161073 1.0000 80 chrIII:4378840-4378920 1.0000 80 chrII:5772980-5773060 1.0000 80 chrX:13511948-13512028 1.0000 80 chrII:14143971-14144051 1.0000 80 chrII:9774801-9774881 1.0000 80 chrIV:796741-796821 1.0000 80 chrX:16604677-16604757 1.0000 80 chrV:12780444-12780524 1.0000 80 chrIII:9861673-9861753 1.0000 80 chrIII:4369690-4369770 1.0000 80 chrIII:4426960-4427040 1.0000 80 chrIII:1601620-1601700 1.0000 80 chrX:6220064-6220144 1.0000 80 chrX:15742049-15742129 1.0000 80 chrX:1837866-1837946 1.0000 80 chrIV:143965-144045 1.0000 80 chrX:5707967-5708047 1.0000 80 chrX:6903152-6903232 1.0000 80 chrII:10301007-10301087 1.0000 80 chrIII:11371411-11371491 1.0000 80 chrIII:5305899-5305979 1.0000 80 chrX:6593569-6593649 1.0000 80 chrX:5022647-5022727 1.0000 80 chrX:10963763-10963843 1.0000 80 chrX:3697728-3697808 1.0000 80 chrX:6292343-6292423 1.0000 80 chrIV:8253007-8253087 1.0000 80 chrII:5292333-5292413 1.0000 80 chrV:15551823-15551903 1.0000 80 chrX:10555569-10555649 1.0000 80 chrIII:8937658-8937738 1.0000 80 chrX:3371445-3371525 1.0000 80 chrX:5165232-5165312 1.0000 80 chrII:12494743-12494823 1.0000 80 chrIV:1745745-1745825 1.0000 80 chrIII:1604699-1604779 1.0000 80 chrI:14113324-14113404 1.0000 80 chrX:353281-353361 1.0000 80 chrV:11610647-11610727 1.0000 80 chrV:9503544-9503624 1.0000 80 chrIV:13386203-13386283 1.0000 80 chrIII:2768826-2768906 1.0000 80 chrII:8107256-8107336 1.0000 80 chrIII:5602143-5602223 1.0000 80 chrX:11252625-11252705 1.0000 80 chrIII:10461259-10461339 1.0000 80 chrV:10965474-10965554 1.0000 80 chrII:11484790-11484870 1.0000 80 chrX:12106164-12106244 1.0000 80 chrX:15297533-15297613 1.0000 80 chrI:12198623-12198703 1.0000 80 chrV:19126047-19126127 1.0000 80 chrIII:6158692-6158772 1.0000 80 chrIII:2769032-2769112 1.0000 80 chrV:19643214-19643294 1.0000 80 chrIII:8678511-8678591 1.0000 80 chrI:9938407-9938487 1.0000 80 chrI:9722326-9722406 1.0000 80 chrV:13003529-13003609 1.0000 80 chrII:7200190-7200270 1.0000 80 chrX:9467746-9467826 1.0000 80 chrX:489894-489974 1.0000 80 chrII:5105207-5105287 1.0000 80 chrIII:502781-502861 1.0000 80 chrI:8259525-8259605 1.0000 80 chrX:1858897-1858977 1.0000 80 chrI:6105780-6105860 1.0000 80 chrX:14015930-14016010 1.0000 80 chrX:12563813-12563893 1.0000 80 chrIV:12594681-12594761 1.0000 80 chrII:5032810-5032890 1.0000 80 chrI:14737373-14737453 1.0000 80 chrIV:3524931-3525011 1.0000 80 chrV:15873921-15874001 1.0000 80 chrI:5176418-5176498 1.0000 80 chrIV:11549817-11549897 1.0000 80 chrI:5986310-5986390 1.0000 80 chrIII:5295066-5295146 1.0000 80 chrIII:13463096-13463176 1.0000 80 chrV:5791019-5791099 1.0000 80 chrI:5706965-5707045 1.0000 80 chrIII:4470940-4471020 1.0000 80 chrIV:7574042-7574122 1.0000 80 chrII:7184086-7184166 1.0000 80 chrX:1880786-1880866 1.0000 80 chrX:2549508-2549588 1.0000 80 chrX:12665192-12665272 1.0000 80 chrIII:835942-836022 1.0000 80 chrIV:390448-390528 1.0000 80 chrX:12661176-12661256 1.0000 80 chrX:13307098-13307178 1.0000 80 chrX:13448800-13448880 1.0000 80 chrX:11757910-11757990 1.0000 80 chrV:15191049-15191129 1.0000 80 chrV:9970306-9970386 1.0000 80 chrIV:11474180-11474260 1.0000 80 chrV:1868780-1868860 1.0000 80 chrX:2613177-2613257 1.0000 80 chrX:4606667-4606747 1.0000 80 chrV:12002144-12002224 1.0000 80 chrIII:8043901-8043981 1.0000 80 chrI:6781800-6781880 1.0000 80 chrI:1836722-1836802 1.0000 80 chrI:8224362-8224442 1.0000 80 chrX:16634851-16634931 1.0000 80 chrII:11960779-11960859 1.0000 80 chrIV:8927192-8927272 1.0000 80 chrI:11182524-11182604 1.0000 80 chrX:5085560-5085640 1.0000 80 chrII:5782088-5782168 1.0000 80 chrV:11314173-11314253 1.0000 80 chrX:6207837-6207917 1.0000 80 chrIV:3294802-3294882 1.0000 80 chrII:8547308-8547388 1.0000 80 chrIV:14033952-14034032 1.0000 80 chrIV:6756564-6756644 1.0000 80 chrV:11782889-11782969 1.0000 80 chrIV:12086754-12086834 1.0000 80 chrI:6082763-6082843 1.0000 80 chrII:6853279-6853359 1.0000 80 chrIII:5080884-5080964 1.0000 80 chrV:8500537-8500617 1.0000 80 chrIV:1595934-1596014 1.0000 80 chrX:9743560-9743640 1.0000 80 chrX:13665529-13665609 1.0000 80 chrIII:1859687-1859767 1.0000 80 chrV:12303594-12303674 1.0000 80 chrI:12652274-12652354 1.0000 80 chrX:3036101-3036181 1.0000 80 chrII:10840213-10840293 1.0000 80 chrX:14064007-14064087 1.0000 80 chrIV:2408648-2408728 1.0000 80 chrI:9788696-9788776 1.0000 80 chrIII:5031631-5031711 1.0000 80 chrIII:10849045-10849125 1.0000 80 chrI:13463899-13463979 1.0000 80 chrII:255308-255388 1.0000 80 chrX:2227223-2227303 1.0000 80 chrIII:13070610-13070690 1.0000 80 chrX:11605908-11605988 1.0000 80 chrI:9979877-9979957 1.0000 80 chrV:6267616-6267696 1.0000 80 chrI:14759472-14759552 1.0000 80 chrX:11606110-11606190 1.0000 80 chrIII:3867543-3867623 1.0000 80 chrII:15165996-15166076 1.0000 80 chrI:6554626-6554706 1.0000 80 chrIII:4689775-4689855 1.0000 80 chrIII:4757077-4757157 1.0000 80 chrV:15465150-15465230 1.0000 80 chrIII:8109618-8109698 1.0000 80 chrX:8836108-8836188 1.0000 80 chrII:14804663-14804743 1.0000 80 chrX:410354-410434 1.0000 80 chrII:5661828-5661908 1.0000 80 chrIII:10759162-10759242 1.0000 80 chrIII:10989765-10989845 1.0000 80 chrX:13665729-13665809 1.0000 80 chrX:5801165-5801245 1.0000 80 chrIV:5967183-5967263 1.0000 80 chrX:16209768-16209848 1.0000 80 chrX:8404437-8404517 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ceh-24/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-24.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.251 C 0.241 G 0.244 T 0.263 Background letter frequencies (from file dataset with add-one prior applied): A 0.251 C 0.241 G 0.245 T 0.263 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TCGAACCC MEME-1 width = 8 sites = 35 llr = 308 E-value = 1.3e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::a5::: pos.-specific C :8::17aa probability G ::a:2::: matrix T a2::23:: bits 2.1 ** ** 1.8 * ** ** 1.6 * ** ** 1.4 * ** ** Relative 1.2 **** ** Entropy 1.0 **** *** (12.7 bits) 0.8 **** *** 0.6 **** *** 0.4 **** *** 0.2 ******** 0.0 -------- Multilevel TCGAACCC consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:1880786-1880866 46 1.37e-05 GAACCGGGAA TCGAACCC GGGACCTCTC chrIV:11549817-11549897 58 1.37e-05 GCCACGAGAA TCGAACCC GTGATGCATA chrV:15873921-15874001 7 1.37e-05 CGCACA TCGAACCC GTGGCATGCC chrIII:1604699-1604779 18 1.37e-05 TTGCGGGGAA TCGAACCC CGGCCTTATG chrIV:1745745-1745825 71 1.37e-05 GCGCGCTCCA TCGAACCC CA chrX:15742049-15742129 66 1.37e-05 GGGCGCAGGT TCGAACCC TGCGGAC chrIII:8650380-8650460 16 1.37e-05 GAACCGGGAA TCGAACCC GGGACCTCTC chrI:8530120-8530200 23 1.37e-05 TTGCGGGGAA TCGAACCC CGGCCTTATG chrIV:7574042-7574122 71 2.86e-05 TGGCCCAAGT TCGAATCC CA chrX:8971600-8971680 63 2.86e-05 CCGCGTAGGT TCGAATCC TGCTGACTGC chrIII:535378-535458 69 2.86e-05 GGTCACTGGT TCGAATCC GGTT chrIV:5967183-5967263 31 5.64e-05 TGTCGCGGGT TCGAGCCC CGCATTGGGC chrI:12198623-12198703 34 5.64e-05 GATTGCAGGT TCGATCCC TGCCTGGGTC chrI:6136587-6136667 64 5.64e-05 TGTCGCGGGT TCGAGCCC CGCATTGGG chrX:8386217-8386297 41 5.64e-05 GATTGCAGGT TCGAGCCC TGCCTGGGTC chrI:2410110-2410190 68 5.64e-05 GCGCGCTGGT TCGATCCC CACCA chrV:12303594-12303674 72 6.95e-05 CTTCGTTGGT TCGACCCC C chrII:5032810-5032890 15 6.95e-05 GGTCGCAGGT TCGACCCC TGCTGGCGGC chrIII:502781-502861 1 6.95e-05 . TCGACCCC CACGCAGTGT chrII:12494743-12494823 53 6.95e-05 GGTCGCAGGT TCGACCCC TGCTGGCGGC chrII:6248670-6248750 32 6.95e-05 CAATGTAGGT TCGACCCC CGCTTTACTG chrX:5801165-5801245 61 8.44e-05 GAACCGGGGA TTGAACCC GGGACCTCTC chrV:15191049-15191129 53 8.44e-05 CGCTGAGGAG TTGAACCC GCGTCTGTTG chrX:16604677-16604757 58 8.44e-05 CGGCCGGGAA TTGAACCC GGGTCTCGCA chrX:13511948-13512028 37 8.44e-05 GAACCGGGGA TTGAACCC GGGACCTCTC chrX:9637829-9637909 38 8.44e-05 GTATGGGGAA TTGAACCC CAGCCCTCTC chrX:12890297-12890377 3 8.44e-05 AA TTGAACCC CGGACTTCTC chrX:8836108-8836188 58 1.15e-04 CGGCCCGGGT TCGATTCC CGGCATGGGA chrIV:8927192-8927272 63 1.15e-04 GTCCGCGTGA TCGATTCC CGCCCGCGCC chrX:14015930-14016010 67 1.15e-04 AGGCCGGGGT TCGATTCC CCGCAA chrIV:143965-144045 71 1.15e-04 GACTGCAGGT TCGAGTCC TG chrII:9566236-9566316 59 1.15e-04 GATTGCAGGT TCGAGTCC TGCCGTGGTC chrX:14115695-14115775 50 1.15e-04 GACTGCAGGT TCGAGTCC TGCCTCGGTC chrIII:1424541-1424621 3 1.15e-04 GT TCGATTCC CCCCGAACGC chrX:410354-410434 70 1.45e-04 ACTCAGGACT TTGAATCC TGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1880786-1880866 1.4e-05 45_[+1]_27 chrIV:11549817-11549897 1.4e-05 57_[+1]_15 chrV:15873921-15874001 1.4e-05 6_[+1]_66 chrIII:1604699-1604779 1.4e-05 17_[+1]_55 chrIV:1745745-1745825 1.4e-05 70_[+1]_2 chrX:15742049-15742129 1.4e-05 65_[+1]_7 chrIII:8650380-8650460 1.4e-05 15_[+1]_57 chrI:8530120-8530200 1.4e-05 22_[+1]_50 chrIV:7574042-7574122 2.9e-05 70_[+1]_2 chrX:8971600-8971680 2.9e-05 62_[+1]_10 chrIII:535378-535458 2.9e-05 68_[+1]_4 chrIV:5967183-5967263 5.6e-05 30_[+1]_42 chrI:12198623-12198703 5.6e-05 33_[+1]_39 chrI:6136587-6136667 5.6e-05 63_[+1]_9 chrX:8386217-8386297 5.6e-05 40_[+1]_32 chrI:2410110-2410190 5.6e-05 67_[+1]_5 chrV:12303594-12303674 7e-05 71_[+1]_1 chrII:5032810-5032890 7e-05 14_[+1]_58 chrIII:502781-502861 7e-05 [+1]_72 chrII:12494743-12494823 7e-05 52_[+1]_20 chrII:6248670-6248750 7e-05 31_[+1]_41 chrX:5801165-5801245 8.4e-05 60_[+1]_12 chrV:15191049-15191129 8.4e-05 52_[+1]_20 chrX:16604677-16604757 8.4e-05 57_[+1]_15 chrX:13511948-13512028 8.4e-05 36_[+1]_36 chrX:9637829-9637909 8.4e-05 37_[+1]_35 chrX:12890297-12890377 8.4e-05 2_[+1]_70 chrX:8836108-8836188 0.00011 57_[+1]_15 chrIV:8927192-8927272 0.00011 62_[+1]_10 chrX:14015930-14016010 0.00011 66_[+1]_6 chrIV:143965-144045 0.00011 70_[+1]_2 chrII:9566236-9566316 0.00011 58_[+1]_14 chrX:14115695-14115775 0.00011 49_[+1]_23 chrIII:1424541-1424621 0.00011 2_[+1]_70 chrX:410354-410434 0.00015 69_[+1]_3 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCGAACCC width=8 seqs=35 chrX:1880786-1880866 ( 46) TCGAACCC 1 chrIV:11549817-11549897 ( 58) TCGAACCC 1 chrV:15873921-15874001 ( 7) TCGAACCC 1 chrIII:1604699-1604779 ( 18) TCGAACCC 1 chrIV:1745745-1745825 ( 71) TCGAACCC 1 chrX:15742049-15742129 ( 66) TCGAACCC 1 chrIII:8650380-8650460 ( 16) TCGAACCC 1 chrI:8530120-8530200 ( 23) TCGAACCC 1 chrIV:7574042-7574122 ( 71) TCGAATCC 1 chrX:8971600-8971680 ( 63) TCGAATCC 1 chrIII:535378-535458 ( 69) TCGAATCC 1 chrIV:5967183-5967263 ( 31) TCGAGCCC 1 chrI:12198623-12198703 ( 34) TCGATCCC 1 chrI:6136587-6136667 ( 64) TCGAGCCC 1 chrX:8386217-8386297 ( 41) TCGAGCCC 1 chrI:2410110-2410190 ( 68) TCGATCCC 1 chrV:12303594-12303674 ( 72) TCGACCCC 1 chrII:5032810-5032890 ( 15) TCGACCCC 1 chrIII:502781-502861 ( 1) TCGACCCC 1 chrII:12494743-12494823 ( 53) TCGACCCC 1 chrII:6248670-6248750 ( 32) TCGACCCC 1 chrX:5801165-5801245 ( 61) TTGAACCC 1 chrV:15191049-15191129 ( 53) TTGAACCC 1 chrX:16604677-16604757 ( 58) TTGAACCC 1 chrX:13511948-13512028 ( 37) TTGAACCC 1 chrX:9637829-9637909 ( 38) TTGAACCC 1 chrX:12890297-12890377 ( 3) TTGAACCC 1 chrX:8836108-8836188 ( 58) TCGATTCC 1 chrIV:8927192-8927272 ( 63) TCGATTCC 1 chrX:14015930-14016010 ( 67) TCGATTCC 1 chrIV:143965-144045 ( 71) TCGAGTCC 1 chrII:9566236-9566316 ( 59) TCGAGTCC 1 chrX:14115695-14115775 ( 50) TCGAGTCC 1 chrIII:1424541-1424621 ( 3) TCGATTCC 1 chrX:410354-410434 ( 70) TTGAATCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4104 E= 1.3e-010 -1177 -1177 -1177 193 -1177 173 -1177 -40 -1177 -1177 203 -1177 199 -1177 -1177 -1177 103 -75 -51 -62 -1177 151 -1177 26 -1177 205 -1177 -1177 -1177 205 -1177 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 1.3e-010 0.000000 0.000000 0.000000 1.000000 0.000000 0.800000 0.000000 0.200000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.514286 0.142857 0.171429 0.171429 0.000000 0.685714 0.000000 0.314286 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 regular expression -------------------------------------------------------------------------------- T[CT]GAA[CT]CC -------------------------------------------------------------------------------- Time 8.55 secs. ******************************************************************************** ******************************************************************************** MOTIF TAGCKCAG MEME-2 width = 8 sites = 22 llr = 218 E-value = 7.4e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAGCKCAG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :7::::a: pos.-specific C :::a:a:: probability G :3a:4::a matrix T a:::6::: bits 2.1 ** *** 1.8 * ** *** 1.6 * ** *** 1.4 * ** *** Relative 1.2 **** *** Entropy 1.0 ******** (14.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TAGCTCAG consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCKCAG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:9743560-9743640 36 1.52e-05 TGCGGGGGTA TAGCTCAG GGGTAGAGCG chrI:6781800-6781880 10 1.52e-05 CTGGGGGTA TAGCTCAG TGGCAGAGCA chrX:12665192-12665272 43 1.52e-05 GTGCCGTCGA TAGCTCAG TTGGTAGAGC chrIV:12594681-12594761 66 1.52e-05 GCCGCCCGGT TAGCTCAG TCGGTAG chrV:19126047-19126127 4 1.52e-05 CGA TAGCTCAG TTGGGAGAGC chrV:9503544-9503624 25 1.52e-05 GTCGGGGGTA TAGCTCAG GGGTAGAGCG chrII:12494743-12494823 5 1.52e-05 GCCA TAGCTCAG TCGGTTAGAG chrII:5292333-5292413 6 1.52e-05 GGGTA TAGCTCAG TGGTAGAGCG chrX:6593569-6593649 34 1.52e-05 ACTGCCTCGA TAGCTCAG TTGGGAGAGC chrIII:5305899-5305979 13 1.52e-05 GGCGCCCTTA TAGCTCAG TGGTAGAGCG chrI:6136587-6136667 17 1.52e-05 GCCGCCCGGT TAGCTCAG TCGGTAGAGC chrI:11505511-11505591 47 1.52e-05 ATCGGGGGTA TAGCTCAG TGGCAGAGCA chrX:14804821-14804901 63 1.52e-05 CACGGGGGTA TAGCTCAG TGGCAGAGCA chrIII:535378-535458 11 1.52e-05 GTGCCGTCGA TAGCTCAG TTGGTAGAGC chrX:3697728-3697808 35 2.93e-05 CGTGCTTCCG TAGCGCAG TAGGCAGCGC chrIII:8106649-8106729 11 2.93e-05 GCCGCTTCCG TAGCGCAG TAGGCAGCGC chrV:11782889-11782969 37 5.80e-05 GTTGCGCGCA TGGCGCAG GCGGTTAGAT chrII:11960779-11960859 47 5.80e-05 GACACCGTTG TGGCGCAG GCGGGTAGCG chrV:12002144-12002224 39 5.80e-05 CGTGCCCCAT TGGCGCAG TCGGTTAGCG chrIV:7574042-7574122 26 5.80e-05 GACGGCCTTG TGGCGCAG GCGGTTACTG chrI:2410110-2410190 21 5.80e-05 ACTGCGCGTC TGGCGCAG CCGGTTGGCT chrX:8156120-8156200 65 5.80e-05 AACAGCAGCG TGGCGCAG TGGAAGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCKCAG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:9743560-9743640 1.5e-05 35_[+2]_37 chrI:6781800-6781880 1.5e-05 9_[+2]_63 chrX:12665192-12665272 1.5e-05 42_[+2]_30 chrIV:12594681-12594761 1.5e-05 65_[+2]_7 chrV:19126047-19126127 1.5e-05 3_[+2]_69 chrV:9503544-9503624 1.5e-05 24_[+2]_48 chrII:12494743-12494823 1.5e-05 4_[+2]_68 chrII:5292333-5292413 1.5e-05 5_[+2]_67 chrX:6593569-6593649 1.5e-05 33_[+2]_39 chrIII:5305899-5305979 1.5e-05 12_[+2]_60 chrI:6136587-6136667 1.5e-05 16_[+2]_56 chrI:11505511-11505591 1.5e-05 46_[+2]_26 chrX:14804821-14804901 1.5e-05 62_[+2]_10 chrIII:535378-535458 1.5e-05 10_[+2]_62 chrX:3697728-3697808 2.9e-05 34_[+2]_38 chrIII:8106649-8106729 2.9e-05 10_[+2]_62 chrV:11782889-11782969 5.8e-05 36_[+2]_36 chrII:11960779-11960859 5.8e-05 46_[+2]_26 chrV:12002144-12002224 5.8e-05 38_[+2]_34 chrIV:7574042-7574122 5.8e-05 25_[+2]_47 chrI:2410110-2410190 5.8e-05 20_[+2]_52 chrX:8156120-8156200 5.8e-05 64_[+2]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCKCAG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAGCKCAG width=8 seqs=22 chrX:9743560-9743640 ( 36) TAGCTCAG 1 chrI:6781800-6781880 ( 10) TAGCTCAG 1 chrX:12665192-12665272 ( 43) TAGCTCAG 1 chrIV:12594681-12594761 ( 66) TAGCTCAG 1 chrV:19126047-19126127 ( 4) TAGCTCAG 1 chrV:9503544-9503624 ( 25) TAGCTCAG 1 chrII:12494743-12494823 ( 5) TAGCTCAG 1 chrII:5292333-5292413 ( 6) TAGCTCAG 1 chrX:6593569-6593649 ( 34) TAGCTCAG 1 chrIII:5305899-5305979 ( 13) TAGCTCAG 1 chrI:6136587-6136667 ( 17) TAGCTCAG 1 chrI:11505511-11505591 ( 47) TAGCTCAG 1 chrX:14804821-14804901 ( 63) TAGCTCAG 1 chrIII:535378-535458 ( 11) TAGCTCAG 1 chrX:3697728-3697808 ( 35) TAGCGCAG 1 chrIII:8106649-8106729 ( 11) TAGCGCAG 1 chrV:11782889-11782969 ( 37) TGGCGCAG 1 chrII:11960779-11960859 ( 47) TGGCGCAG 1 chrV:12002144-12002224 ( 39) TGGCGCAG 1 chrIV:7574042-7574122 ( 26) TGGCGCAG 1 chrI:2410110-2410190 ( 21) TGGCGCAG 1 chrX:8156120-8156200 ( 65) TGGCGCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCKCAG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0499 E= 7.4e-008 -1110 -1110 -1110 193 153 -1110 16 -1110 -1110 -1110 203 -1110 -1110 205 -1110 -1110 -1110 -1110 57 127 -1110 205 -1110 -1110 199 -1110 -1110 -1110 -1110 -1110 203 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCKCAG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 7.4e-008 0.000000 0.000000 0.000000 1.000000 0.727273 0.000000 0.272727 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.363636 0.636364 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGCKCAG MEME-2 regular expression -------------------------------------------------------------------------------- T[AG]GC[TG]CAG -------------------------------------------------------------------------------- Time 12.30 secs. ******************************************************************************** ******************************************************************************** MOTIF GMGCGCKC MEME-3 width = 8 sites = 35 llr = 297 E-value = 1.8e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GMGCGCKC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :321::1: pos.-specific C :7:9:a:9 probability G a:8:a:51 matrix T ::::::4: bits 2.1 * ** 1.8 * ** 1.6 * ** 1.4 * **** * Relative 1.2 * **** * Entropy 1.0 ****** * (12.3 bits) 0.8 ****** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGCGCGC consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGCGCKC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:12303594-12303674 31 1.22e-05 AGGCGGGTGT GCGCGCGC TTGTCGTTCA chrV:9970306-9970386 9 1.22e-05 AGAACGAC GCGCGCGC CTCTTCCCCA chrII:7184086-7184166 28 1.22e-05 TCCCCCCAAT GCGCGCGC ACATCCACTG chrIII:5555077-5555157 60 1.22e-05 TGCGCAAAAA GCGCGCGC ACATTGCGTT chrV:4731553-4731633 49 1.22e-05 GCAAAAACGC GCGCGCGC ATTGCATGTA chrI:14721617-14721697 2 1.22e-05 T GCGCGCGC GCGGTTTTCG chrII:7708749-7708829 5 1.22e-05 CAAT GCGCGCGC ACGGTTTTTG chrV:6267616-6267696 49 2.52e-05 CGTTTCTCGT GCGCGCTC TTTTTGAAGA chrIII:13070610-13070690 49 2.52e-05 GGAAGATGGT GCGCGCTC GTCAAAAACG chrIV:1745745-1745825 61 2.52e-05 CTCCTATCAA GCGCGCTC CATCGAACCC chrX:1837866-1837946 7 2.52e-05 CGCCAG GCGCGCTC GCCACTCGGC chrII:5105207-5105287 57 3.79e-05 TCAATTCGTA GAGCGCGC ACGCTAACCA chrX:9743560-9743640 49 5.14e-05 CTCAGGGGTA GAGCGCTC GCTTTGCATG chrV:13003529-13003609 24 5.14e-05 CATGCTAAGG GAGCGCTC TACCACTGAG chrV:9503544-9503624 38 5.14e-05 CTCAGGGGTA GAGCGCTC GCTTCGCATG chrII:5292333-5292413 19 5.14e-05 CTCAGTGGTA GAGCGCTC CCTTAGCATG chrX:9637829-9637909 67 5.14e-05 CATGCTAAGG GAGCGCTC TACCAC chrX:12890297-12890377 32 5.14e-05 CATGCGAAGC GAGCGCTC TACCCCTGAG chrIII:13463096-13463176 50 6.39e-05 CACGGGCTGT GCGCGCAC CCCGTTTCGA chrII:255308-255388 55 7.64e-05 TCGGCAAGCG GCACGCGC AGTTTTCGCA chrII:11484790-11484870 3 7.64e-05 GC GCACGCGC ACACCACTCG chrI:9938407-9938487 3 8.97e-05 GT GCACGCTC TCGTCCAACA chrV:8500537-8500617 38 1.15e-04 CGACGCTTTG GCGAGCGC AATGAATGTT chrV:19643214-19643294 3 1.15e-04 AG GCGAGCGC GTTAGCCACT chrIII:10461259-10461339 38 1.15e-04 TGTGTAAAAT GCGCGCGG CACACTTGCG chrV:3587798-3587878 4 1.15e-04 GTC GCGAGCGC AATCCGCGGC chrIII:4171163-4171243 1 1.15e-04 . GCGCGCGG CATATCTGCA chrV:13962133-13962213 73 1.15e-04 TGCATAAACT GCGCGCGG chrV:19126047-19126127 18 1.28e-04 TCAGTTGGGA GAGCGCAC GACTGAAGAT chrII:5772980-5773060 70 1.28e-04 GGGAAGAAGA GAGCGCAC TCT chrX:2549508-2549588 64 1.41e-04 GTTAACAGCC GAACGCGC TGCCTATTG chrIII:8678511-8678591 30 1.41e-04 ATCTGGAGTC GAACGCGC TACCATTGCG chrI:2410110-2410190 58 1.68e-04 GTAAACTGTA GCGCGCTG GTTCGATCCC chrI:6554626-6554706 55 2.20e-04 CAACTCTGCG GCACGCAC TTTTGCAGTG chrIV:5974272-5974352 58 2.48e-04 CTCTTGCTCC GAGAGCTC CAAAAGAGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGCGCKC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:12303594-12303674 1.2e-05 30_[+3]_42 chrV:9970306-9970386 1.2e-05 8_[+3]_64 chrII:7184086-7184166 1.2e-05 27_[+3]_45 chrIII:5555077-5555157 1.2e-05 59_[+3]_13 chrV:4731553-4731633 1.2e-05 48_[+3]_24 chrI:14721617-14721697 1.2e-05 1_[+3]_71 chrII:7708749-7708829 1.2e-05 4_[+3]_68 chrV:6267616-6267696 2.5e-05 48_[+3]_24 chrIII:13070610-13070690 2.5e-05 48_[+3]_24 chrIV:1745745-1745825 2.5e-05 60_[+3]_12 chrX:1837866-1837946 2.5e-05 6_[+3]_66 chrII:5105207-5105287 3.8e-05 56_[+3]_16 chrX:9743560-9743640 5.1e-05 48_[+3]_24 chrV:13003529-13003609 5.1e-05 23_[+3]_49 chrV:9503544-9503624 5.1e-05 37_[+3]_35 chrII:5292333-5292413 5.1e-05 18_[+3]_54 chrX:9637829-9637909 5.1e-05 66_[+3]_6 chrX:12890297-12890377 5.1e-05 31_[+3]_41 chrIII:13463096-13463176 6.4e-05 49_[+3]_23 chrII:255308-255388 7.6e-05 54_[+3]_18 chrII:11484790-11484870 7.6e-05 2_[+3]_70 chrI:9938407-9938487 9e-05 2_[+3]_70 chrV:8500537-8500617 0.00011 37_[+3]_35 chrV:19643214-19643294 0.00011 2_[+3]_70 chrIII:10461259-10461339 0.00011 37_[+3]_35 chrV:3587798-3587878 0.00011 3_[+3]_69 chrIII:4171163-4171243 0.00011 [+3]_72 chrV:13962133-13962213 0.00011 72_[+3] chrV:19126047-19126127 0.00013 17_[+3]_55 chrII:5772980-5773060 0.00013 69_[+3]_3 chrX:2549508-2549588 0.00014 63_[+3]_9 chrIII:8678511-8678591 0.00014 29_[+3]_43 chrI:2410110-2410190 0.00017 57_[+3]_15 chrI:6554626-6554706 0.00022 54_[+3]_18 chrIV:5974272-5974352 0.00025 57_[+3]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGCGCKC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GMGCGCKC width=8 seqs=35 chrV:12303594-12303674 ( 31) GCGCGCGC 1 chrV:9970306-9970386 ( 9) GCGCGCGC 1 chrII:7184086-7184166 ( 28) GCGCGCGC 1 chrIII:5555077-5555157 ( 60) GCGCGCGC 1 chrV:4731553-4731633 ( 49) GCGCGCGC 1 chrI:14721617-14721697 ( 2) GCGCGCGC 1 chrII:7708749-7708829 ( 5) GCGCGCGC 1 chrV:6267616-6267696 ( 49) GCGCGCTC 1 chrIII:13070610-13070690 ( 49) GCGCGCTC 1 chrIV:1745745-1745825 ( 61) GCGCGCTC 1 chrX:1837866-1837946 ( 7) GCGCGCTC 1 chrII:5105207-5105287 ( 57) GAGCGCGC 1 chrX:9743560-9743640 ( 49) GAGCGCTC 1 chrV:13003529-13003609 ( 24) GAGCGCTC 1 chrV:9503544-9503624 ( 38) GAGCGCTC 1 chrII:5292333-5292413 ( 19) GAGCGCTC 1 chrX:9637829-9637909 ( 67) GAGCGCTC 1 chrX:12890297-12890377 ( 32) GAGCGCTC 1 chrIII:13463096-13463176 ( 50) GCGCGCAC 1 chrII:255308-255388 ( 55) GCACGCGC 1 chrII:11484790-11484870 ( 3) GCACGCGC 1 chrI:9938407-9938487 ( 3) GCACGCTC 1 chrV:8500537-8500617 ( 38) GCGAGCGC 1 chrV:19643214-19643294 ( 3) GCGAGCGC 1 chrIII:10461259-10461339 ( 38) GCGCGCGG 1 chrV:3587798-3587878 ( 4) GCGAGCGC 1 chrIII:4171163-4171243 ( 1) GCGCGCGG 1 chrV:13962133-13962213 ( 73) GCGCGCGG 1 chrV:19126047-19126127 ( 18) GAGCGCAC 1 chrII:5772980-5773060 ( 70) GAGCGCAC 1 chrX:2549508-2549588 ( 64) GAACGCGC 1 chrIII:8678511-8678591 ( 30) GAACGCGC 1 chrI:2410110-2410190 ( 58) GCGCGCTG 1 chrI:6554626-6554706 ( 55) GCACGCAC 1 chrIV:5974272-5974352 ( 58) GAGAGCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGCGCKC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8043 E= 1.8e-005 -1177 -1177 203 -1177 45 145 -1177 -1177 -55 -1177 176 -1177 -114 188 -1177 -1177 -1177 -1177 203 -1177 -1177 205 -1177 -1177 -114 -1177 107 50 -1177 188 -110 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGCGCKC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 1.8e-005 0.000000 0.000000 1.000000 0.000000 0.342857 0.657143 0.000000 0.000000 0.171429 0.000000 0.828571 0.000000 0.114286 0.885714 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.114286 0.000000 0.514286 0.371429 0.000000 0.885714 0.114286 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGCGCKC MEME-3 regular expression -------------------------------------------------------------------------------- G[CA]GCGC[GT]C -------------------------------------------------------------------------------- Time 15.95 secs. ******************************************************************************** ******************************************************************************** MOTIF TTKCGCAA MEME-4 width = 8 sites = 28 llr = 247 E-value = 1.1e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTKCGCAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::2aa pos.-specific C :::7:8:: probability G :25:a::: matrix T a853:::: bits 2.1 * ** 1.8 * * ** 1.6 * * ** 1.4 * **** Relative 1.2 ** ***** Entropy 1.0 ******** (12.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTCGCAA consensus GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCGCAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:11605908-11605988 56 1.63e-05 AAAGGGTCTC TTTCGCAA TGTGTCAACA chrII:255308-255388 66 1.63e-05 CACGCGCAGT TTTCGCAA GTAGTGC chrIV:390448-390528 61 1.63e-05 ccgcgcggct tttcgcaa ggctgccgca chrV:3587798-3587878 28 1.63e-05 CGGCGCGCGA TTTCGCAA CTCCGCCGCA chrV:11113325-11113405 49 1.63e-05 cggcacgcgt tttcgcaa gtctgccgca chrI:14721617-14721697 15 1.63e-05 CGCGCGCGGT TTTCGCAA TATCGCCGCA chrIII:3664384-3664464 46 1.63e-05 GCCGCGCGCA TTTCGCAA CGCTGCCGCA chrI:5986310-5986390 33 3.15e-05 TTGTTACAAA TTGCGCAA GTGCAACCAC chrIII:5555077-5555157 49 3.15e-05 CGCGGGGCAC TTGCGCAA AAAGCGCGCG chrI:1958522-1958602 35 3.15e-05 TGCGGCGGTG TTGCGCAA CGGTGTGCGG chrI:12198623-12198703 58 4.93e-05 GGTCAAATGT TTTTGCAA CACCTCATTA chrIII:2768826-2768906 16 4.93e-05 GGCACGTGGT TTTTGCAA GAGTGCCGCA chrV:11239344-11239424 35 4.93e-05 TGCGCGGGTT TTTTGCAA CCCCGCCGCA chrIV:9191344-9191424 64 4.93e-05 ACAGTTGAGA TTTTGCAA AGGGCGTTT chrI:11323302-11323382 19 4.93e-05 ATGCTTTTTT TTTTGCAA AATAAAATAA chrIII:1424541-1424621 42 4.93e-05 ATTTTTCTTG TTTTGCAA GGTTCGGCGG chrV:19636800-19636880 44 4.93e-05 TTTCTCAGAT TTTTGCAA TTCTTAACAT chrII:7708749-7708829 18 4.93e-05 CGCGCACGGT TTTTGCAA TTCTCCCGCA chrX:8404437-8404517 69 9.52e-05 TGTGCTTCCG TGGCGCAA TAGG chrI:8224362-8224442 48 9.52e-05 ATTGACTCGA TGGCGCAA CTGGGAACGC chrIII:8937658-8937738 59 9.52e-05 TGTTGTGGGG TGGCGCAA TAGGTTGTGC chrX:6371313-6371393 72 9.52e-05 CATGACTGCT TGGCGCAA T chrV:19723000-19723080 38 9.52e-05 TCGGCTTCCG TGGCGCAA TAGGCAGCGC chrI:5176418-5176498 19 1.28e-04 TGTGCGCATG TTGCGAAA TACCATGCGG chrX:12563813-12563893 56 1.28e-04 AATTTCTTTT TTGCGAAA AAGTATTGGC chrIII:10461259-10461339 51 1.28e-04 CGCGGCACAC TTGCGAAA CCCTGTGCGG chrIII:12368634-12368714 9 1.28e-04 GTAGGAAA TTGCGAAA TTCTCATAAA chrII:4238060-4238140 31 1.28e-04 TGCGGCACAC TTGCGAAA ATGCGTGCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCGCAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:11605908-11605988 1.6e-05 55_[+4]_17 chrII:255308-255388 1.6e-05 65_[+4]_7 chrIV:390448-390528 1.6e-05 60_[+4]_12 chrV:3587798-3587878 1.6e-05 27_[+4]_45 chrV:11113325-11113405 1.6e-05 48_[+4]_24 chrI:14721617-14721697 1.6e-05 14_[+4]_58 chrIII:3664384-3664464 1.6e-05 45_[+4]_27 chrI:5986310-5986390 3.2e-05 32_[+4]_40 chrIII:5555077-5555157 3.2e-05 48_[+4]_24 chrI:1958522-1958602 3.2e-05 34_[+4]_38 chrI:12198623-12198703 4.9e-05 57_[+4]_15 chrIII:2768826-2768906 4.9e-05 15_[+4]_57 chrV:11239344-11239424 4.9e-05 34_[+4]_38 chrIV:9191344-9191424 4.9e-05 63_[+4]_9 chrI:11323302-11323382 4.9e-05 18_[+4]_54 chrIII:1424541-1424621 4.9e-05 41_[+4]_31 chrV:19636800-19636880 4.9e-05 43_[+4]_29 chrII:7708749-7708829 4.9e-05 17_[+4]_55 chrX:8404437-8404517 9.5e-05 68_[+4]_4 chrI:8224362-8224442 9.5e-05 47_[+4]_25 chrIII:8937658-8937738 9.5e-05 58_[+4]_14 chrX:6371313-6371393 9.5e-05 71_[+4]_1 chrV:19723000-19723080 9.5e-05 37_[+4]_35 chrI:5176418-5176498 0.00013 18_[+4]_54 chrX:12563813-12563893 0.00013 55_[+4]_17 chrIII:10461259-10461339 0.00013 50_[+4]_22 chrIII:12368634-12368714 0.00013 8_[+4]_64 chrII:4238060-4238140 0.00013 30_[+4]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCGCAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTKCGCAA width=8 seqs=28 chrX:11605908-11605988 ( 56) TTTCGCAA 1 chrII:255308-255388 ( 66) TTTCGCAA 1 chrIV:390448-390528 ( 61) TTTCGCAA 1 chrV:3587798-3587878 ( 28) TTTCGCAA 1 chrV:11113325-11113405 ( 49) TTTCGCAA 1 chrI:14721617-14721697 ( 15) TTTCGCAA 1 chrIII:3664384-3664464 ( 46) TTTCGCAA 1 chrI:5986310-5986390 ( 33) TTGCGCAA 1 chrIII:5555077-5555157 ( 49) TTGCGCAA 1 chrI:1958522-1958602 ( 35) TTGCGCAA 1 chrI:12198623-12198703 ( 58) TTTTGCAA 1 chrIII:2768826-2768906 ( 16) TTTTGCAA 1 chrV:11239344-11239424 ( 35) TTTTGCAA 1 chrIV:9191344-9191424 ( 64) TTTTGCAA 1 chrI:11323302-11323382 ( 19) TTTTGCAA 1 chrIII:1424541-1424621 ( 42) TTTTGCAA 1 chrV:19636800-19636880 ( 44) TTTTGCAA 1 chrII:7708749-7708829 ( 18) TTTTGCAA 1 chrX:8404437-8404517 ( 69) TGGCGCAA 1 chrI:8224362-8224442 ( 48) TGGCGCAA 1 chrIII:8937658-8937738 ( 59) TGGCGCAA 1 chrX:6371313-6371393 ( 72) TGGCGCAA 1 chrV:19723000-19723080 ( 38) TGGCGCAA 1 chrI:5176418-5176498 ( 19) TTGCGAAA 1 chrX:12563813-12563893 ( 56) TTGCGAAA 1 chrIII:10461259-10461339 ( 51) TTGCGAAA 1 chrIII:12368634-12368714 ( 9) TTGCGAAA 1 chrII:4238060-4238140 ( 31) TTGCGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCGCAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.18967 E= 1.1e-002 -1145 -1145 -1145 193 -1145 -1145 -45 164 -1145 -1145 92 102 -1145 157 -1145 12 -1145 -1145 203 -1145 -49 177 -1145 -1145 199 -1145 -1145 -1145 199 -1145 -1145 -1145 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCGCAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 1.1e-002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.178571 0.821429 0.000000 0.000000 0.464286 0.535714 0.000000 0.714286 0.000000 0.285714 0.000000 0.000000 1.000000 0.000000 0.178571 0.821429 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKCGCAA MEME-4 regular expression -------------------------------------------------------------------------------- TT[TG][CT]GCAA -------------------------------------------------------------------------------- Time 19.59 secs. ******************************************************************************** ******************************************************************************** MOTIF AAMWTTTT MEME-5 width = 8 sites = 70 llr = 501 E-value = 1.6e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAMWTTTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A 8955:::: pos.-specific C 2:3::::1 probability G :::1:::1 matrix T :123aaa8 bits 2.1 1.8 * * 1.6 *** 1.4 * *** Relative 1.2 ** *** Entropy 1.0 ** **** (10.3 bits) 0.8 ** **** 0.6 ** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAATTTT consensus CT sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAMWTTTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:14115695-14115775 69 1.90e-05 GCCTCGGTCG AAAATTTT GCTT chrIII:1424541-1424621 23 1.90e-05 CCGAACGCAG AAAATTTT TATTTTTCTT chrIII:3505255-3505335 46 1.90e-05 AAATCGTGAA AAAATTTT AGGATAGCGG chrIII:10989765-10989845 8 3.89e-05 GCGTTCC AAATTTTT CGACAAATTT chrI:14737373-14737453 30 3.89e-05 ATGATGCGTT AAATTTTT TTTGGCATAG chrV:10965474-10965554 40 3.89e-05 GATATTCTCC AAATTTTT AACGTTAGTA chrX:5165232-5165312 55 3.89e-05 GTTTTCGTCC AAATTTTT TATATTTTTC chrII:5292333-5292413 72 3.89e-05 ATACCTCCAG AAATTTTT T chrX:8386217-8386297 59 3.89e-05 TGCCTGGGTC AAATTTTT TTTTTTTGTA chrII:5836553-5836633 72 3.89e-05 TGCTTGCTGC AAATTTTT T chrX:13665729-13665809 69 5.71e-05 GAATAACCAT AACATTTT ATTT chrX:12693273-12693353 47 5.71e-05 ACGGGGTTGC AACATTTT CTAAGACAGG chrV:19636800-19636880 57 5.71e-05 TGCAATTCTT AACATTTT CAGTCAAAAT chrX:11606110-11606190 7 7.70e-05 ACTTTG AATATTTT TGTGCAGAAA chrI:5986310-5986390 10 7.70e-05 TTCTTTTTC AATATTTT GGCGCTTGTT chrIII:4378840-4378920 1 7.70e-05 . AATATTTT CAGTTACGTT chrIII:3916863-3916943 29 7.70e-05 GCAGTTCGTA AATATTTT GCTGCTCAAT chrI:6493925-6494005 73 7.70e-05 AACACTCCCG AATATTTT chrV:9088861-9088941 52 7.70e-05 AAAATCAGAA AATATTTT AAGCTACCAG chrV:53459-53539 53 7.70e-05 tatgcctgta aatatttt ggtcgttggt chrV:265395-265475 43 7.70e-05 GGCAACCAAA AATATTTT CCAAGTTTTT chrII:12494743-12494823 72 9.61e-05 GCTGGCGGCA AACTTTTT G chrI:1823126-1823206 40 9.61e-05 TTTTATCTTA AACTTTTT TGCTAAAAAT chrV:265754-265834 69 9.61e-05 ATATTGAAAC AACTTTTT TCGG chrIV:5967183-5967263 61 1.36e-04 ATGTTTTTAC AAAGTTTT AACATTTATA chrV:15465150-15465230 56 1.36e-04 TTTCTTTCTC AATTTTTT TCAAAAGGAA chrIII:4757077-4757157 35 1.36e-04 TTTGTACTTG AAAGTTTT CTATGCTTTT chrX:14015930-14016010 2 1.36e-04 G AAAGTTTT CATCTCCGTT chrII:14063094-14063174 59 1.36e-04 ATCCGCAGGC AAAGTTTT TTGTTTTAGC chrX:5319300-5319380 17 1.36e-04 AAACCGACTG AAAGTTTT TAAAGCCCTA chrI:11978705-11978785 46 1.36e-04 CTTCGAAACA AAAGTTTT CACGCTCCGT chrII:14408056-14408136 23 1.36e-04 aattttgcat AATTTTTT ATAATTTTTA chrIII:4171163-4171243 71 1.54e-04 CATTCGAATG CAAATTTT GG chrIV:7574042-7574122 55 1.71e-04 GCTGCTGTGG AAAATTTG GCCCAAGTTC chrX:15297533-15297613 54 1.71e-04 TTTCAGAATA AAAATTTG GGATGAAAAA chrI:14113324-14113404 41 1.71e-04 TTTTAGCACT AAAATTTG ATAGATTTAG chrIII:11317242-11317322 44 1.71e-04 CATTGGGCTT AAAATTTG AAGCGAATTT chrIII:12368634-12368714 24 1.71e-04 AAATTCTCAT AAAATTTG AAAAAGTTGC chrIV:12086754-12086834 69 2.10e-04 TGGTCACCGG ATAATTTT GTTT chrII:8547308-8547388 26 2.10e-04 GTGAGTGAAA CAATTTTT AGTTTTTATA chrX:13448800-13448880 28 2.10e-04 TGTGACGAAA ATAATTTT CAACCAGAAA chrIV:3524931-3525011 68 2.10e-04 ATTACAACTG ATAATTTT CTCAG chrII:5032810-5032890 35 2.65e-04 CTGGCGGCAA AATGTTTT GCTTCTTATT chrX:1858897-1858977 30 2.65e-04 AATTTGCAAA CACATTTT AACTCAATCT chrX:353281-353361 55 2.65e-04 GCCATCTCTC CACATTTT TCTCTTTTCA chrIV:796741-796821 72 2.65e-04 GATTTAAATC CACATTTT A chrX:5085560-5085640 35 3.77e-04 AAAAGTGCAT AAAATTTC ATACAAACAA chrX:2549508-2549588 13 3.77e-04 TTTTAATCTA AAAATTTC GCTCCCGGGT chrII:14143971-14144051 63 3.77e-04 ATTTAAGCAA AATATTTG TTTGAGTATT chrII:13481177-13481257 68 3.77e-04 ccgattgcag aaaatttc cgaaa chrX:9296700-9296780 17 3.77e-04 AAATGTTAAT AATATTTG GTTAATAAAC chrX:1880786-1880866 6 4.14e-04 TCAAA ATCATTTT ATTTGTACAA chrIII:4369690-4369770 73 4.14e-04 GACCACTTGT CACTTTTT chrV:7231026-7231106 15 4.14e-04 AACCCCCGCG CACTTTTT ATGCAATGCT chrII:9258281-9258361 26 4.14e-04 GTTTCTTTGT CACTTTTT TTACATTTGG chrIV:3294802-3294882 24 4.73e-04 TGTAAATCAG CATTTTTT ACTTTTTTCT chrIV:12594681-12594761 18 4.73e-04 CTCCACTTTT CATTTTTT ATGTCTAAGC chrIII:2768826-2768906 52 4.73e-04 TTTTTTAATT ATTATTTT GGAGAAAAAG chrI:11505511-11505591 27 4.73e-04 CCTTGCATTG CAAGTTTT CCATCGGGGG chrII:8107256-8107336 24 4.90e-04 CCCGGTATCG AACTTTTG AGGTAAGAGC chrIII:1601620-1601700 21 4.90e-04 CATGGTGTTG AACTTTTG GGAGGTAGCG chrIV:6756564-6756644 3 5.82e-04 tc atcttttt ttcctcttcc chrIV:1745745-1745825 26 6.40e-04 GGTTCCCGCA AACATTTC GTGTCCTCCC chrIV:17087529-17087609 17 6.40e-04 GAATAATATA ATAGTTTT CATTTAATTA chrX:9637829-9637909 13 7.12e-04 CGGAATGTAA AAAATGTT TCTGGAGGTA chrV:18496744-18496824 62 7.12e-04 TCTCCTTTGG AAAATGTT GCTAATTAAA chrII:14528393-14528473 43 7.49e-04 AAAAATAATT AAACTTTT ACAGTTAGAA chrV:3587798-3587878 71 9.10e-04 GGTTTTTCAC CTATTTTT CC chrI:5176418-5176498 62 1.10e-03 AGCCACGCCC CTTATTTT TGAATTCGAA chrX:6292343-6292423 44 1.50e-03 TGAATATACA TACATTTT CTCTCTCACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAMWTTTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:14115695-14115775 1.9e-05 68_[+5]_4 chrIII:1424541-1424621 1.9e-05 22_[+5]_50 chrIII:3505255-3505335 1.9e-05 45_[+5]_27 chrIII:10989765-10989845 3.9e-05 7_[+5]_65 chrI:14737373-14737453 3.9e-05 29_[+5]_43 chrV:10965474-10965554 3.9e-05 39_[+5]_33 chrX:5165232-5165312 3.9e-05 54_[+5]_18 chrII:5292333-5292413 3.9e-05 71_[+5]_1 chrX:8386217-8386297 3.9e-05 58_[+5]_14 chrII:5836553-5836633 3.9e-05 71_[+5]_1 chrX:13665729-13665809 5.7e-05 68_[+5]_4 chrX:12693273-12693353 5.7e-05 46_[+5]_26 chrV:19636800-19636880 5.7e-05 56_[+5]_16 chrX:11606110-11606190 7.7e-05 6_[+5]_66 chrI:5986310-5986390 7.7e-05 9_[+5]_63 chrIII:4378840-4378920 7.7e-05 [+5]_72 chrIII:3916863-3916943 7.7e-05 28_[+5]_44 chrI:6493925-6494005 7.7e-05 72_[+5] chrV:9088861-9088941 7.7e-05 51_[+5]_21 chrV:53459-53539 7.7e-05 52_[+5]_20 chrV:265395-265475 7.7e-05 42_[+5]_30 chrII:12494743-12494823 9.6e-05 71_[+5]_1 chrI:1823126-1823206 9.6e-05 39_[+5]_33 chrV:265754-265834 9.6e-05 68_[+5]_4 chrIV:5967183-5967263 0.00014 60_[+5]_12 chrV:15465150-15465230 0.00014 55_[+5]_17 chrIII:4757077-4757157 0.00014 34_[+5]_38 chrX:14015930-14016010 0.00014 1_[+5]_71 chrII:14063094-14063174 0.00014 58_[+5]_14 chrX:5319300-5319380 0.00014 16_[+5]_56 chrI:11978705-11978785 0.00014 45_[+5]_27 chrII:14408056-14408136 0.00014 22_[+5]_50 chrIII:4171163-4171243 0.00015 70_[+5]_2 chrIV:7574042-7574122 0.00017 54_[+5]_18 chrX:15297533-15297613 0.00017 53_[+5]_19 chrI:14113324-14113404 0.00017 40_[+5]_32 chrIII:11317242-11317322 0.00017 43_[+5]_29 chrIII:12368634-12368714 0.00017 23_[+5]_49 chrIV:12086754-12086834 0.00021 68_[+5]_4 chrII:8547308-8547388 0.00021 25_[+5]_47 chrX:13448800-13448880 0.00021 27_[+5]_45 chrIV:3524931-3525011 0.00021 67_[+5]_5 chrII:5032810-5032890 0.00027 34_[+5]_38 chrX:1858897-1858977 0.00027 29_[+5]_43 chrX:353281-353361 0.00027 54_[+5]_18 chrIV:796741-796821 0.00027 71_[+5]_1 chrX:5085560-5085640 0.00038 34_[+5]_38 chrX:2549508-2549588 0.00038 12_[+5]_60 chrII:14143971-14144051 0.00038 62_[+5]_10 chrII:13481177-13481257 0.00038 67_[+5]_5 chrX:9296700-9296780 0.00038 16_[+5]_56 chrX:1880786-1880866 0.00041 5_[+5]_67 chrIII:4369690-4369770 0.00041 72_[+5] chrV:7231026-7231106 0.00041 14_[+5]_58 chrII:9258281-9258361 0.00041 25_[+5]_47 chrIV:3294802-3294882 0.00047 23_[+5]_49 chrIV:12594681-12594761 0.00047 17_[+5]_55 chrIII:2768826-2768906 0.00047 51_[+5]_21 chrI:11505511-11505591 0.00047 26_[+5]_46 chrII:8107256-8107336 0.00049 23_[+5]_49 chrIII:1601620-1601700 0.00049 20_[+5]_52 chrIV:6756564-6756644 0.00058 2_[+5]_70 chrIV:1745745-1745825 0.00064 25_[+5]_47 chrIV:17087529-17087609 0.00064 16_[+5]_56 chrX:9637829-9637909 0.00071 12_[+5]_60 chrV:18496744-18496824 0.00071 61_[+5]_11 chrII:14528393-14528473 0.00075 42_[+5]_30 chrV:3587798-3587878 0.00091 70_[+5]_2 chrI:5176418-5176498 0.0011 61_[+5]_11 chrX:6292343-6292423 0.0015 43_[+5]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAMWTTTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAMWTTTT width=8 seqs=70 chrX:14115695-14115775 ( 69) AAAATTTT 1 chrIII:1424541-1424621 ( 23) AAAATTTT 1 chrIII:3505255-3505335 ( 46) AAAATTTT 1 chrIII:10989765-10989845 ( 8) AAATTTTT 1 chrI:14737373-14737453 ( 30) AAATTTTT 1 chrV:10965474-10965554 ( 40) AAATTTTT 1 chrX:5165232-5165312 ( 55) AAATTTTT 1 chrII:5292333-5292413 ( 72) AAATTTTT 1 chrX:8386217-8386297 ( 59) AAATTTTT 1 chrII:5836553-5836633 ( 72) AAATTTTT 1 chrX:13665729-13665809 ( 69) AACATTTT 1 chrX:12693273-12693353 ( 47) AACATTTT 1 chrV:19636800-19636880 ( 57) AACATTTT 1 chrX:11606110-11606190 ( 7) AATATTTT 1 chrI:5986310-5986390 ( 10) AATATTTT 1 chrIII:4378840-4378920 ( 1) AATATTTT 1 chrIII:3916863-3916943 ( 29) AATATTTT 1 chrI:6493925-6494005 ( 73) AATATTTT 1 chrV:9088861-9088941 ( 52) AATATTTT 1 chrV:53459-53539 ( 53) AATATTTT 1 chrV:265395-265475 ( 43) AATATTTT 1 chrII:12494743-12494823 ( 72) AACTTTTT 1 chrI:1823126-1823206 ( 40) AACTTTTT 1 chrV:265754-265834 ( 69) AACTTTTT 1 chrIV:5967183-5967263 ( 61) AAAGTTTT 1 chrV:15465150-15465230 ( 56) AATTTTTT 1 chrIII:4757077-4757157 ( 35) AAAGTTTT 1 chrX:14015930-14016010 ( 2) AAAGTTTT 1 chrII:14063094-14063174 ( 59) AAAGTTTT 1 chrX:5319300-5319380 ( 17) AAAGTTTT 1 chrI:11978705-11978785 ( 46) AAAGTTTT 1 chrII:14408056-14408136 ( 23) AATTTTTT 1 chrIII:4171163-4171243 ( 71) CAAATTTT 1 chrIV:7574042-7574122 ( 55) AAAATTTG 1 chrX:15297533-15297613 ( 54) AAAATTTG 1 chrI:14113324-14113404 ( 41) AAAATTTG 1 chrIII:11317242-11317322 ( 44) AAAATTTG 1 chrIII:12368634-12368714 ( 24) AAAATTTG 1 chrIV:12086754-12086834 ( 69) ATAATTTT 1 chrII:8547308-8547388 ( 26) CAATTTTT 1 chrX:13448800-13448880 ( 28) ATAATTTT 1 chrIV:3524931-3525011 ( 68) ATAATTTT 1 chrII:5032810-5032890 ( 35) AATGTTTT 1 chrX:1858897-1858977 ( 30) CACATTTT 1 chrX:353281-353361 ( 55) CACATTTT 1 chrIV:796741-796821 ( 72) CACATTTT 1 chrX:5085560-5085640 ( 35) AAAATTTC 1 chrX:2549508-2549588 ( 13) AAAATTTC 1 chrII:14143971-14144051 ( 63) AATATTTG 1 chrII:13481177-13481257 ( 68) AAAATTTC 1 chrX:9296700-9296780 ( 17) AATATTTG 1 chrX:1880786-1880866 ( 6) ATCATTTT 1 chrIII:4369690-4369770 ( 73) CACTTTTT 1 chrV:7231026-7231106 ( 15) CACTTTTT 1 chrII:9258281-9258361 ( 26) CACTTTTT 1 chrIV:3294802-3294882 ( 24) CATTTTTT 1 chrIV:12594681-12594761 ( 18) CATTTTTT 1 chrIII:2768826-2768906 ( 52) ATTATTTT 1 chrI:11505511-11505591 ( 27) CAAGTTTT 1 chrII:8107256-8107336 ( 24) AACTTTTG 1 chrIII:1601620-1601700 ( 21) AACTTTTG 1 chrIV:6756564-6756644 ( 3) ATCTTTTT 1 chrIV:1745745-1745825 ( 26) AACATTTC 1 chrIV:17087529-17087609 ( 17) ATAGTTTT 1 chrX:9637829-9637909 ( 13) AAAATGTT 1 chrV:18496744-18496824 ( 62) AAAATGTT 1 chrII:14528393-14528473 ( 43) AAACTTTT 1 chrV:3587798-3587878 ( 71) CTATTTTT 1 chrI:5176418-5176498 ( 62) CTTATTTT 1 chrX:6292343-6292423 ( 44) TACATTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAMWTTTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.84505 E= 1.6e-004 167 -38 -1277 -420 179 -1277 -1277 -103 99 9 -1277 -12 111 -407 -93 26 -1277 -1277 -1277 193 -1277 -1277 -310 188 -1277 -1277 -1277 193 -1277 -208 -93 163 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAMWTTTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 70 E= 1.6e-004 0.800000 0.185714 0.000000 0.014286 0.871429 0.000000 0.000000 0.128571 0.500000 0.257143 0.000000 0.242857 0.542857 0.014286 0.128571 0.314286 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.028571 0.971429 0.000000 0.000000 0.000000 1.000000 0.000000 0.057143 0.128571 0.814286 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAMWTTTT MEME-5 regular expression -------------------------------------------------------------------------------- AA[ACT][AT]TTTT -------------------------------------------------------------------------------- Time 23.13 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:265395-265475 1.81e-02 42_[+5(7.70e-05)]_30 chrIII:3500002-3500082 2.73e-01 80 chrX:8156120-8156200 8.29e-02 64_[+2(5.80e-05)]_8 chrV:265754-265834 7.03e-02 68_[+5(9.61e-05)]_4 chrIII:3664384-3664464 2.09e-02 45_[+4(1.63e-05)]_27 chrI:1175817-1175897 5.07e-01 80 chrX:12890297-12890377 6.49e-03 2_[+1(8.44e-05)]_21_[+3(5.14e-05)]_\ 41 chrII:14408056-14408136 9.33e-02 80 chrII:7708749-7708829 6.68e-05 4_[+3(1.22e-05)]_5_[+4(4.93e-05)]_\ 55 chrV:53459-53539 4.05e-02 52_[+5(7.70e-05)]_20 chrII:14528393-14528473 3.47e-01 80 chrII:5836553-5836633 1.74e-02 71_[+5(3.89e-05)]_1 chrIII:4426761-4426841 3.85e-01 80 chrIII:535378-535458 1.07e-03 10_[+2(1.52e-05)]_50_[+1(2.86e-05)]_\ 4 chrI:14721617-14721697 3.14e-04 1_[+3(1.22e-05)]_5_[+4(1.63e-05)]_\ 58 chrII:6248670-6248750 3.73e-02 31_[+1(6.95e-05)]_41 chrII:4238060-4238140 1.72e-02 80 chrV:19636800-19636880 3.62e-03 43_[+4(4.93e-05)]_5_[+5(5.71e-05)]_\ 16 chrIII:8768070-8768150 1.43e-01 80 chrV:13962133-13962213 1.94e-01 80 chrIII:3505255-3505335 7.01e-03 45_[+5(1.90e-05)]_27 chrIV:3233094-3233174 3.96e-01 80 chrIII:640579-640659 5.27e-01 80 chrV:19372109-19372189 3.73e-01 80 chrIII:3175110-3175190 3.11e-01 80 chrX:8971600-8971680 9.19e-02 62_[+1(2.86e-05)]_10 chrI:2410110-2410190 1.39e-04 20_[+2(5.80e-05)]_39_[+1(5.64e-05)]_\ 5 chrV:4731553-4731633 2.50e-02 46_[+3(1.22e-05)]_26 chrX:9296700-9296780 2.97e-01 80 chrIII:12368634-12368714 4.42e-02 80 chrIII:4568718-4568798 1.31e-01 80 chrX:12693273-12693353 1.07e-01 46_[+5(5.71e-05)]_26 chrII:4046113-4046193 8.41e-01 80 chrI:1958522-1958602 6.41e-02 34_[+4(3.15e-05)]_38 chrI:1575661-1575741 5.68e-01 80 chrII:9258281-9258361 2.26e-01 80 chrV:19522512-19522592 4.53e-01 80 chrII:12042262-12042342 6.20e-01 80 chrV:19723000-19723080 1.67e-02 37_[+4(9.52e-05)]_35 chrIV:9477708-9477788 9.14e-01 80 chrV:18496744-18496824 2.56e-01 80 chrIV:5974272-5974352 2.45e-01 80 chrII:13481177-13481257 2.06e-01 80 chrIV:11026127-11026207 1.68e-01 80 chrI:1415944-1416024 8.93e-01 80 chrI:1823126-1823206 1.15e-01 39_[+5(9.61e-05)]_33 chrI:11978705-11978785 2.70e-02 80 chrIII:1424541-1424621 6.16e-06 22_[+5(1.90e-05)]_11_[+4(4.93e-05)]_\ 31 chrI:4001398-4001478 3.29e-01 80 chrIII:4171163-4171243 1.42e-03 80 chrI:8530120-8530200 1.02e-01 22_[+1(1.37e-05)]_50 chrIII:445622-445702 1.00e+00 80 chrI:11323302-11323382 8.70e-02 18_[+4(4.93e-05)]_54 chrIII:931612-931692 9.76e-01 80 chrIII:6133527-6133607 1.00e+00 80 chrIV:17087529-17087609 6.57e-01 80 chrV:9088861-9088941 2.14e-01 51_[+5(7.70e-05)]_21 chrX:14115695-14115775 2.19e-03 68_[+5(1.90e-05)]_4 chrII:6827407-6827487 6.15e-01 80 chrX:14804821-14804901 1.24e-02 62_[+2(1.52e-05)]_10 chrIII:8106649-8106729 1.88e-02 10_[+2(2.93e-05)]_62 chrI:11505511-11505591 3.92e-03 46_[+2(1.52e-05)]_26 chrX:9637829-9637909 1.49e-03 37_[+1(8.44e-05)]_21_[+3(5.14e-05)]_\ 6 chrIV:9191344-9191424 5.66e-02 63_[+4(4.93e-05)]_9 chrX:5319300-5319380 1.92e-01 80 chrX:13264701-13264781 9.88e-01 80 chrX:8386217-8386297 4.20e-04 40_[+1(5.64e-05)]_10_[+5(3.89e-05)]_\ 14 chrIII:11236903-11236983 7.30e-01 80 chrIII:5555077-5555157 5.55e-04 48_[+4(3.15e-05)]_3_[+3(1.22e-05)]_\ 13 chrV:11113325-11113405 2.22e-02 48_[+4(1.63e-05)]_24 chrIV:5334695-5334775 6.54e-01 80 chrV:3587798-3587878 4.62e-04 27_[+4(1.63e-05)]_45 chrIII:11317242-11317322 9.35e-02 80 chrV:11239344-11239424 2.24e-02 34_[+4(4.93e-05)]_38 chrIII:8650380-8650460 4.88e-02 15_[+1(1.37e-05)]_57 chrII:8547104-8547184 6.83e-01 80 chrI:13310407-13310487 7.85e-01 80 chrV:7231026-7231106 9.37e-03 80 chrI:6136587-6136667 2.38e-03 16_[+2(1.52e-05)]_39_[+1(5.64e-05)]_\ 9 chrI:6493925-6494005 1.39e-01 72_[+5(7.70e-05)] chrV:1003955-1004035 2.97e-01 80 chrII:14063094-14063174 3.78e-02 80 chrX:13121278-13121358 8.61e-01 80 chrII:9566236-9566316 1.58e-01 80 chrIII:3916863-3916943 3.60e-02 28_[+5(7.70e-05)]_44 chrX:6371313-6371393 9.58e-02 71_[+4(9.52e-05)]_1 chrV:6889022-6889102 2.33e-01 80 chrI:13160993-13161073 6.58e-01 80 chrIII:4378840-4378920 9.80e-02 [+5(7.70e-05)]_72 chrII:5772980-5773060 2.13e-01 80 chrX:13511948-13512028 1.09e-01 36_[+1(8.44e-05)]_36 chrII:14143971-14144051 1.43e-01 80 chrII:9774801-9774881 2.66e-01 80 chrIV:796741-796821 1.61e-01 80 chrX:16604677-16604757 9.10e-02 57_[+1(8.44e-05)]_15 chrV:12780444-12780524 6.96e-01 80 chrIII:9861673-9861753 5.07e-01 80 chrIII:4369690-4369770 2.10e-01 80 chrIII:4426960-4427040 6.07e-01 80 chrIII:1601620-1601700 2.12e-01 80 chrX:6220064-6220144 1.10e-01 80 chrX:15742049-15742129 5.91e-03 65_[+1(1.37e-05)]_7 chrX:1837866-1837946 4.14e-02 6_[+3(2.52e-05)]_66 chrIV:143965-144045 2.75e-01 80 chrX:5707967-5708047 7.78e-01 80 chrX:6903152-6903232 4.62e-01 80 chrII:10301007-10301087 6.05e-01 80 chrIII:11371411-11371491 4.79e-01 80 chrIII:5305899-5305979 2.24e-02 12_[+2(1.52e-05)]_60 chrX:6593569-6593649 3.34e-02 33_[+2(1.52e-05)]_39 chrX:5022647-5022727 8.70e-01 80 chrX:10963763-10963843 3.02e-01 80 chrX:3697728-3697808 7.57e-02 34_[+2(2.93e-05)]_38 chrX:6292343-6292423 5.05e-01 80 chrIV:8253007-8253087 5.78e-01 80 chrII:5292333-5292413 1.37e-05 5_[+2(1.52e-05)]_5_[+3(5.14e-05)]_\ 45_[+5(3.89e-05)]_1 chrV:15551823-15551903 8.88e-01 80 chrX:10555569-10555649 8.96e-01 80 chrIII:8937658-8937738 5.15e-03 58_[+4(9.52e-05)]_14 chrX:3371445-3371525 7.27e-01 80 chrX:5165232-5165312 2.94e-02 54_[+5(3.89e-05)]_18 chrII:12494743-12494823 4.60e-05 4_[+2(1.52e-05)]_40_[+1(6.95e-05)]_\ 11_[+5(9.61e-05)]_1 chrIV:1745745-1745825 4.35e-05 60_[+3(2.52e-05)]_2_[+1(1.37e-05)]_\ 2 chrIII:1604699-1604779 1.02e-01 17_[+1(1.37e-05)]_55 chrI:14113324-14113404 3.60e-02 80 chrX:353281-353361 1.42e-01 80 chrV:11610647-11610727 1.53e-01 80 chrV:9503544-9503624 8.15e-04 24_[+2(1.52e-05)]_5_[+3(5.14e-05)]_\ 35 chrIV:13386203-13386283 2.02e-01 80 chrIII:2768826-2768906 1.84e-02 15_[+4(4.93e-05)]_57 chrII:8107256-8107336 3.43e-01 80 chrIII:5602143-5602223 6.46e-01 80 chrX:11252625-11252705 3.82e-02 48_[+2(8.64e-05)]_24 chrIII:10461259-10461339 9.32e-03 80 chrV:10965474-10965554 4.14e-02 39_[+5(3.89e-05)]_33 chrII:11484790-11484870 1.87e-01 2_[+3(7.64e-05)]_70 chrX:12106164-12106244 1.00e+00 80 chrX:15297533-15297613 1.62e-01 80 chrI:12198623-12198703 4.04e-04 33_[+1(5.64e-05)]_16_[+4(4.93e-05)]_\ 15 chrV:19126047-19126127 4.17e-04 3_[+2(1.52e-05)]_69 chrIII:6158692-6158772 5.93e-01 80 chrIII:2769032-2769112 6.54e-01 80 chrV:19643214-19643294 2.05e-01 80 chrIII:8678511-8678591 5.15e-03 80 chrI:9938407-9938487 2.36e-02 2_[+3(8.97e-05)]_70 chrI:9722326-9722406 4.93e-01 80 chrV:13003529-13003609 1.19e-01 23_[+3(5.14e-05)]_49 chrII:7200190-7200270 8.86e-01 80 chrX:9467746-9467826 1.29e-01 80 chrX:489894-489974 1.00e+00 80 chrII:5105207-5105287 2.22e-02 56_[+3(3.79e-05)]_16 chrIII:502781-502861 1.62e-01 [+1(6.95e-05)]_72 chrI:8259525-8259605 2.21e-01 80 chrX:1858897-1858977 5.75e-02 80 chrI:6105780-6105860 7.05e-01 80 chrX:14015930-14016010 2.09e-02 80 chrX:12563813-12563893 4.01e-02 80 chrIV:12594681-12594761 3.01e-03 65_[+2(1.52e-05)]_7 chrII:5032810-5032890 2.02e-02 14_[+1(6.95e-05)]_58 chrI:14737373-14737453 3.39e-02 29_[+5(3.89e-05)]_43 chrIV:3524931-3525011 9.86e-02 80 chrV:15873921-15874001 1.08e-01 6_[+1(1.37e-05)]_66 chrI:5176418-5176498 1.15e-02 80 chrIV:11549817-11549897 1.20e-01 57_[+1(1.37e-05)]_15 chrI:5986310-5986390 2.01e-04 9_[+5(7.70e-05)]_15_[+4(3.15e-05)]_\ 40 chrIII:5295066-5295146 5.97e-01 80 chrIII:13463096-13463176 6.91e-02 49_[+3(6.39e-05)]_23 chrV:5791019-5791099 4.01e-01 80 chrI:5706965-5707045 7.54e-02 80 chrIII:4470940-4471020 5.06e-01 80 chrIV:7574042-7574122 3.42e-05 25_[+2(5.80e-05)]_37_[+1(2.86e-05)]_\ 2 chrII:7184086-7184166 3.19e-02 27_[+3(1.22e-05)]_45 chrX:1880786-1880866 2.25e-03 45_[+1(1.37e-05)]_27 chrX:2549508-2549588 5.33e-03 80 chrX:12665192-12665272 4.52e-02 42_[+2(1.52e-05)]_30 chrIII:835942-836022 7.52e-01 80 chrIV:390448-390528 3.31e-02 60_[+4(1.63e-05)]_12 chrX:12661176-12661256 1.48e-01 80 chrX:13307098-13307178 4.40e-01 80 chrX:13448800-13448880 9.01e-02 80 chrX:11757910-11757990 4.28e-01 80 chrV:15191049-15191129 1.08e-01 52_[+1(8.44e-05)]_20 chrV:9970306-9970386 6.07e-02 8_[+3(1.22e-05)]_64 chrIV:11474180-11474260 2.53e-01 80 chrV:1868780-1868860 2.24e-01 80 chrX:2613177-2613257 7.02e-01 80 chrX:4606667-4606747 2.33e-01 80 chrV:12002144-12002224 2.81e-02 38_[+2(5.80e-05)]_34 chrIII:8043901-8043981 1.99e-01 80 chrI:6781800-6781880 1.15e-02 9_[+2(1.52e-05)]_63 chrI:1836722-1836802 9.74e-01 80 chrI:8224362-8224442 3.99e-03 47_[+4(9.52e-05)]_25 chrX:16634851-16634931 9.59e-01 80 chrII:11960779-11960859 2.42e-02 46_[+2(5.80e-05)]_26 chrIV:8927192-8927272 1.61e-03 80 chrI:11182524-11182604 2.31e-02 80 chrX:5085560-5085640 3.45e-01 80 chrII:5782088-5782168 4.46e-01 80 chrV:11314173-11314253 7.13e-01 80 chrX:6207837-6207917 3.60e-01 80 chrIV:3294802-3294882 2.60e-01 80 chrII:8547308-8547388 4.11e-01 80 chrIV:14033952-14034032 8.82e-01 80 chrIV:6756564-6756644 3.10e-01 80 chrV:11782889-11782969 2.96e-02 36_[+2(5.80e-05)]_36 chrIV:12086754-12086834 2.49e-01 80 chrI:6082763-6082843 1.92e-01 80 chrII:6853279-6853359 3.42e-01 80 chrIII:5080884-5080964 9.66e-01 80 chrV:8500537-8500617 3.34e-02 80 chrIV:1595934-1596014 1.29e-01 80 chrX:9743560-9743640 1.37e-03 35_[+2(1.52e-05)]_5_[+3(5.14e-05)]_\ 24 chrX:13665529-13665609 6.72e-01 80 chrIII:1859687-1859767 3.46e-02 80 chrV:12303594-12303674 3.12e-03 30_[+3(1.22e-05)]_33_[+1(6.95e-05)]_\ 1 chrI:12652274-12652354 6.91e-01 80 chrX:3036101-3036181 6.13e-01 80 chrII:10840213-10840293 2.30e-01 80 chrX:14064007-14064087 7.88e-01 80 chrIV:2408648-2408728 3.13e-01 80 chrI:9788696-9788776 8.05e-01 80 chrIII:5031631-5031711 6.14e-01 80 chrIII:10849045-10849125 2.10e-01 80 chrI:13463899-13463979 4.66e-01 80 chrII:255308-255388 1.90e-03 54_[+3(7.64e-05)]_3_[+4(1.63e-05)]_\ 7 chrX:2227223-2227303 9.03e-01 80 chrIII:13070610-13070690 2.26e-02 48_[+3(2.52e-05)]_24 chrX:11605908-11605988 3.49e-02 55_[+4(1.63e-05)]_17 chrI:9979877-9979957 2.26e-01 80 chrV:6267616-6267696 5.24e-03 48_[+3(2.52e-05)]_24 chrI:14759472-14759552 9.74e-01 80 chrX:11606110-11606190 5.53e-02 6_[+5(7.70e-05)]_66 chrIII:3867543-3867623 4.59e-01 80 chrII:15165996-15166076 3.22e-01 80 chrI:6554626-6554706 1.04e-02 80 chrIII:4689775-4689855 8.79e-01 80 chrIII:4757077-4757157 2.42e-01 80 chrV:15465150-15465230 5.04e-02 80 chrIII:8109618-8109698 9.57e-01 80 chrX:8836108-8836188 2.76e-01 80 chrII:14804663-14804743 5.91e-01 80 chrX:410354-410434 1.75e-01 80 chrII:5661828-5661908 7.93e-01 80 chrIII:10759162-10759242 5.31e-01 80 chrIII:10989765-10989845 3.91e-02 7_[+5(3.89e-05)]_65 chrX:13665729-13665809 1.64e-01 68_[+5(5.71e-05)]_4 chrX:5801165-5801245 4.56e-02 60_[+1(8.44e-05)]_12 chrIV:5967183-5967263 2.52e-03 30_[+1(5.64e-05)]_42 chrX:16209768-16209848 6.03e-01 80 chrX:8404437-8404517 4.38e-02 68_[+4(9.52e-05)]_4 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************