******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-22.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:10672728-10672808 1.0000 80 chrV:10671911-10671991 1.0000 80 chrV:7035676-7035756 1.0000 80 chrI:2837931-2838011 1.0000 80 chrIII:9358576-9358656 1.0000 80 chrV:8784644-8784724 1.0000 80 chrII:10136870-10136950 1.0000 80 chrX:5541198-5541278 1.0000 80 chrIII:12149902-12149982 1.0000 80 chrX:14571482-14571562 1.0000 80 chrX:2047693-2047773 1.0000 80 chrII:7034176-7034256 1.0000 80 chrX:15275748-15275828 1.0000 80 chrV:1992477-1992557 1.0000 80 chrIV:12999281-12999361 1.0000 80 chrI:6175106-6175186 1.0000 80 chrI:14625798-14625878 1.0000 80 chrIII:8136651-8136731 1.0000 80 chrI:6882184-6882264 1.0000 80 chrI:11670320-11670400 1.0000 80 chrI:9525143-9525223 1.0000 80 chrV:11212937-11213017 1.0000 80 chrII:8127502-8127582 1.0000 80 chrIV:3764158-3764238 1.0000 80 chrI:13028592-13028672 1.0000 80 chrII:6234390-6234470 1.0000 80 chrI:7952556-7952636 1.0000 80 chrI:8000340-8000420 1.0000 80 chrM:2928-3008 1.0000 80 chrII:4579919-4579999 1.0000 80 chrII:10204805-10204885 1.0000 80 chrII:13291880-13291960 1.0000 80 chrIII:558949-559029 1.0000 80 chrV:14574206-14574286 1.0000 80 chrV:5302780-5302860 1.0000 80 chrX:3423008-3423088 1.0000 80 chrIII:12617080-12617160 1.0000 80 chrM:8355-8435 1.0000 80 chrM:4980-5060 1.0000 80 chrX:15279421-15279501 1.0000 80 chrII:203236-203316 1.0000 80 chrIV:6646190-6646270 1.0000 80 chrIV:16400918-16400998 1.0000 80 chrI:7714024-7714104 1.0000 80 chrM:9102-9182 1.0000 80 chrX:5475323-5475403 1.0000 80 chrI:11202466-11202546 1.0000 80 chrV:11083780-11083860 1.0000 80 chrV:12509817-12509897 1.0000 80 chrM:7172-7252 1.0000 80 chrX:4961743-4961823 1.0000 80 chrX:12179207-12179287 1.0000 80 chrV:10717068-10717148 1.0000 80 chrIV:6648857-6648937 1.0000 80 chrI:3248571-3248651 1.0000 80 chrM:6105-6185 1.0000 80 chrX:8201143-8201223 1.0000 80 chrX:2212244-2212324 1.0000 80 chrIII:3672978-3673058 1.0000 80 chrV:5676503-5676583 1.0000 80 chrIII:13780378-13780458 1.0000 80 chrIII:5129585-5129665 1.0000 80 chrI:7942725-7942805 1.0000 80 chrM:4603-4683 1.0000 80 chrX:9410952-9411032 1.0000 80 chrIV:7903510-7903590 1.0000 80 chrM:12444-12524 1.0000 80 chrI:10562661-10562741 1.0000 80 chrIV:14875125-14875205 1.0000 80 chrI:7128378-7128458 1.0000 80 chrIV:8782366-8782446 1.0000 80 chrII:9491122-9491202 1.0000 80 chrX:9102281-9102361 1.0000 80 chrX:11004528-11004608 1.0000 80 chrX:10435636-10435716 1.0000 80 chrIV:3521131-3521211 1.0000 80 chrIII:9973213-9973293 1.0000 80 chrII:14405314-14405394 1.0000 80 chrX:13144392-13144472 1.0000 80 chrII:14438254-14438334 1.0000 80 chrX:13584063-13584143 1.0000 80 chrX:11546636-11546716 1.0000 80 chrIV:11593561-11593641 1.0000 80 chrIII:10094781-10094861 1.0000 80 chrII:7708727-7708807 1.0000 80 chrI:397867-397947 1.0000 80 chrIV:12032642-12032722 1.0000 80 chrIII:3664384-3664464 1.0000 80 chrI:11203271-11203351 1.0000 80 chrX:2536681-2536761 1.0000 80 chrII:4908353-4908433 1.0000 80 chrII:9285048-9285128 1.0000 80 chrII:11634191-11634271 1.0000 80 chrX:13950789-13950869 1.0000 80 chrI:6173026-6173106 1.0000 80 chrV:14501324-14501404 1.0000 80 chrII:11635055-11635135 1.0000 80 chrX:13225657-13225737 1.0000 80 chrI:4745338-4745418 1.0000 80 chrI:10175378-10175458 1.0000 80 chrII:14250342-14250422 1.0000 80 chrI:13372936-13373016 1.0000 80 chrIII:5715706-5715786 1.0000 80 chrII:9984966-9985046 1.0000 80 chrIV:5169414-5169494 1.0000 80 chrIV:6785289-6785369 1.0000 80 chrX:5812270-5812350 1.0000 80 chrIV:6097482-6097562 1.0000 80 chrIII:13718626-13718706 1.0000 80 chrX:12175832-12175912 1.0000 80 chrIV:6576828-6576908 1.0000 80 chrX:3694351-3694431 1.0000 80 chrIV:5754155-5754235 1.0000 80 chrIV:11026161-11026241 1.0000 80 chrIV:7488035-7488115 1.0000 80 chrV:9424620-9424700 1.0000 80 chrIV:14033030-14033110 1.0000 80 chrII:1247107-1247187 1.0000 80 chrV:6228529-6228609 1.0000 80 chrIV:7845646-7845726 1.0000 80 chrI:14737442-14737522 1.0000 80 chrI:10769818-10769898 1.0000 80 chrX:14312540-14312620 1.0000 80 chrV:9731021-9731101 1.0000 80 chrII:3521493-3521573 1.0000 80 chrII:9356780-9356860 1.0000 80 chrX:16961585-16961665 1.0000 80 chrX:16147930-16148010 1.0000 80 chrI:2299624-2299704 1.0000 80 chrII:11749641-11749721 1.0000 80 chrI:3842478-3842558 1.0000 80 chrIII:8417698-8417778 1.0000 80 chrV:20778383-20778463 1.0000 80 chrI:9373077-9373157 1.0000 80 chrI:9988925-9989005 1.0000 80 chrX:8386136-8386216 1.0000 80 chrII:6491872-6491952 1.0000 80 chrX:13519242-13519322 1.0000 80 chrV:16356044-16356124 1.0000 80 chrIV:2219594-2219674 1.0000 80 chrIV:10342564-10342644 1.0000 80 chrI:5311657-5311737 1.0000 80 chrI:10539338-10539418 1.0000 80 chrI:5313333-5313413 1.0000 80 chrI:4699420-4699500 1.0000 80 chrX:3127795-3127875 1.0000 80 chrI:10297956-10298036 1.0000 80 chrI:14945776-14945856 1.0000 80 chrIII:4568709-4568789 1.0000 80 chrIII:10461274-10461354 1.0000 80 chrIII:8800179-8800259 1.0000 80 chrIII:4171157-4171237 1.0000 80 chrX:13145290-13145370 1.0000 80 chrI:1958518-1958598 1.0000 80 chrII:4942528-4942608 1.0000 80 chrX:14102166-14102246 1.0000 80 chrIV:14610978-14611058 1.0000 80 chrII:5661249-5661329 1.0000 80 chrX:14753608-14753688 1.0000 80 chrI:1836892-1836972 1.0000 80 chrIII:12612641-12612721 1.0000 80 chrI:14113224-14113304 1.0000 80 chrIII:13062583-13062663 1.0000 80 chrV:19643178-19643258 1.0000 80 chrII:5662057-5662137 1.0000 80 chrIII:354785-354865 1.0000 80 chrIII:4237901-4237981 1.0000 80 chrV:1474682-1474762 1.0000 80 chrX:6092203-6092283 1.0000 80 chrV:13565351-13565431 1.0000 80 chrV:18723776-18723856 1.0000 80 chrX:5429467-5429547 1.0000 80 chrX:1344955-1345035 1.0000 80 chrI:1068283-1068363 1.0000 80 chrX:15841234-15841314 1.0000 80 chrI:5311876-5311956 1.0000 80 chrX:7823317-7823397 1.0000 80 chrX:16726961-16727041 1.0000 80 chrIV:16382273-16382353 1.0000 80 chrX:17480116-17480196 1.0000 80 chrI:14721583-14721663 1.0000 80 chrI:8259518-8259598 1.0000 80 chrIV:1420277-1420357 1.0000 80 chrX:1302480-1302560 1.0000 80 chrX:16056584-16056664 1.0000 80 chrV:10808055-10808135 1.0000 80 chrIV:14033997-14034077 1.0000 80 chrI:4536121-4536201 1.0000 80 chrX:16682055-16682135 1.0000 80 chrII:8107271-8107351 1.0000 80 chrIV:11082890-11082970 1.0000 80 chrIV:620488-620568 1.0000 80 chrX:768211-768291 1.0000 80 chrI:2514330-2514410 1.0000 80 chrV:11314159-11314239 1.0000 80 chrX:4711876-4711956 1.0000 80 chrX:10766250-10766330 1.0000 80 chrX:13700888-13700968 1.0000 80 chrV:1871852-1871932 1.0000 80 chrX:12670540-12670620 1.0000 80 chrIII:8937698-8937778 1.0000 80 chrI:1835609-1835689 1.0000 80 chrII:11759468-11759548 1.0000 80 chrIV:1595956-1596036 1.0000 80 chrII:8075505-8075585 1.0000 80 chrII:13335257-13335337 1.0000 80 chrX:16634838-16634918 1.0000 80 chrIII:4470921-4471001 1.0000 80 chrIII:4475608-4475688 1.0000 80 chrII:13335493-13335573 1.0000 80 chrX:949604-949684 1.0000 80 chrX:4209219-4209299 1.0000 80 chrX:2242988-2243068 1.0000 80 chrII:2974046-2974126 1.0000 80 chrV:12303602-12303682 1.0000 80 chrIV:4445913-4445993 1.0000 80 chrIV:2408581-2408661 1.0000 80 chrIV:6756620-6756700 1.0000 80 chrX:11094161-11094241 1.0000 80 chrX:16612494-16612574 1.0000 80 chrIII:10759202-10759282 1.0000 80 chrX:410297-410377 1.0000 80 chrII:8561390-8561470 1.0000 80 chrIV:390465-390545 1.0000 80 chrIII:9054037-9054117 1.0000 80 chrX:10766450-10766530 1.0000 80 chrI:6105789-6105869 1.0000 80 chrX:6296535-6296615 1.0000 80 chrIII:7854640-7854720 1.0000 80 chrX:13665526-13665606 1.0000 80 chrIII:11371469-11371549 1.0000 80 chrIV:10821856-10821936 1.0000 80 chrIV:9477747-9477827 1.0000 80 chrV:10466823-10466903 1.0000 80 chrX:10568707-10568787 1.0000 80 chrI:4172154-4172234 1.0000 80 chrV:8500530-8500610 1.0000 80 chrI:6781661-6781741 1.0000 80 chrIV:11119202-11119282 1.0000 80 chrI:2410144-2410224 1.0000 80 chrX:11605936-11606016 1.0000 80 chrIII:3867502-3867582 1.0000 80 chrX:14525869-14525949 1.0000 80 chrIV:8252988-8253068 1.0000 80 chrV:15873929-15874009 1.0000 80 chrX:14818846-14818926 1.0000 80 chrII:4376816-4376896 1.0000 80 chrX:3970087-3970167 1.0000 80 chrIII:13068446-13068526 1.0000 80 chrV:17951452-17951532 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ceh-22/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-22.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.248 C 0.248 G 0.254 T 0.251 Background letter frequencies (from file dataset with add-one prior applied): A 0.248 C 0.248 G 0.254 T 0.25 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GAGAGARA MEME-1 width = 8 sites = 59 llr = 478 E-value = 3.2e-021 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGAGARA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :a193a49 pos.-specific C 1:21::1: probability G 9:8:7:6: matrix T :::::::1 bits 2.0 * * 1.8 * * * 1.6 ** * * * 1.4 ** * * * Relative 1.2 ** * * * Entropy 1.0 ****** * (11.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGAGAGA consensus A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGARA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:2974046-2974126 71 1.57e-05 GAGGCGCAGA GAGAGAGA GG chrV:18723776-18723856 66 1.57e-05 aggtcagaga gagagaga gatcgag chrV:13565351-13565431 50 1.57e-05 ACTCTGAAAC GAGAGAGA CTGTGGGAAA chrI:10297956-10298036 14 1.57e-05 atgaaATGAT GAGAGAGA CAGTGATACA chrI:9988925-9989005 42 1.57e-05 ACAGGAAGGT GAGAGAGA CGCAGAAACG chrIV:6785289-6785369 13 1.57e-05 ACTAGAGAGA GAGAGAGA GCACACTAGA chrIV:6648857-6648937 68 1.57e-05 TTGGAGAAGA GAGAGAGA GAGGG chrI:11202466-11202546 22 1.57e-05 aggtcagaga gagagaga gaCATATTCT chrIII:12617080-12617160 24 1.57e-05 ACACTTGAGA GAGAGAGA GGCTATCTCG chrIII:8136651-8136731 47 1.57e-05 CCACTTGACC GAGAGAGA GGGAGAAAGA chrIII:9358576-9358656 1 1.57e-05 . GAGAGAGA TAGAAACAAG chrX:16634838-16634918 71 3.11e-05 GGCCGAAAGC GAGAGAAA CA chrX:8386136-8386216 20 3.11e-05 ACAGAGAGCA GAGAGAAA GACGTAACAC chrV:9424620-9424700 51 3.11e-05 AACGCGTGAA GAGAGAAA GCAATGATTG chrI:13372936-13373016 55 3.11e-05 GCATCTAGCA GAGAGAAA TGGGGGTTGG chrI:7128378-7128458 53 3.11e-05 GCGCTGAAAT GAGAGAAA CACTCTTGAG chrX:9410952-9411032 9 3.11e-05 AAGAGGCA GAGAGAAA TAGGGATAGA chrV:7035676-7035756 41 3.11e-05 TTGCGAAAAC GAGAGAAA ACCTATGAGA chrX:4209219-4209299 34 4.65e-05 CCATCGCGCG GAGAAAGA GGTGTCCCTG chrX:10766250-10766330 39 4.65e-05 aTGGGACACT GAGAAAGA AAGACAGCCA chrIV:12032642-12032722 55 4.65e-05 TAGAAATATC GAGAAAGA ATGCGAGACA chrIII:13780378-13780458 40 4.65e-05 AAAGAGAGAC GAGAAAGA CAACTATTTC chrI:6105789-6105869 70 6.15e-05 TGAGGCGAAG GAGAAAAA GAA chrIV:6756620-6756700 22 6.15e-05 TTCGCGGGCG GAGAAAAA AAGTGTGCGG chrII:11759468-11759548 70 6.15e-05 TGGAATGTTC GAGAAAAA GAA chrX:12670540-12670620 2 6.15e-05 G GAGAAAAA GGTGCGAGTG chrI:1958518-1958598 10 6.15e-05 CGAGAAAAT GAGAAAAA CGGGAATTGT chrM:2928-3008 10 6.15e-05 TTATTTCAA GAGAAAAA TTTTCAGTTT chrI:14625798-14625878 16 6.15e-05 GAGAGCGGGG GAGAAAAA ACTGGCGGAG chrIV:11082890-11082970 68 7.69e-05 GTGTCAGAAC GACAGAGA CAGAA chrIV:5754155-5754235 64 7.69e-05 TGAAGAGACC GACAGAGA AATGCGAGA chrII:13291880-13291960 53 7.69e-05 GTGAAACTTC GACAGAGA CAAGAGATAT chrV:11212937-11213017 66 7.69e-05 TGAAGTAGGA GACAGAGA CAGGGCA chrI:9525143-9525223 37 7.69e-05 ATGCAATATT GACAGAGA AGGTGCCAAT chrI:5311876-5311956 59 9.19e-05 TCCTCTCCGA GACAGAAA CCAAAATGAC chrX:11546636-11546716 38 9.19e-05 AGTATGATAT GACAGAAA CACCCTCTCG chrV:17951452-17951532 56 1.23e-04 GGAAAAGAAG CAGAGAGA ACAGAGGAGA chrII:13335257-13335337 42 1.23e-04 cagagaaacg cagagaga cgcagaCAAC chrX:16726961-16727041 64 1.23e-04 gtgtgtgtgt gagcgagA AGGCTCCCC chrI:1836892-1836972 59 1.23e-04 CGCAGAGAAC CAGAGAGA GGGGCTGCTG chrII:11635055-11635135 45 1.23e-04 TGACGGCGAA GAGCGAGA GAAGGGGGAA chrI:7942725-7942805 39 1.23e-04 AGTATTTTGA GAGCGAGA GCCTCCCGGT chrI:6882184-6882264 72 1.23e-04 GTAGGTGAAA CAGAGAGA G chrII:8107271-8107351 27 1.38e-04 AGGTAAGAGC GAGAGACA CTCACGCTAA chrIII:354785-354865 15 1.84e-04 GGCAAAGAGT GAGCGAAA GAGCGGAGTA chrV:10466823-10466903 54 1.99e-04 GTATGTGTGT gaaagaga gaatgagaag chrI:14721583-14721663 4 2.14e-04 GAT GACAAAAA GACGAGTCTC chrIII:5715706-5715786 36 2.14e-04 CAGCGAACAA GACAAAAA GCAGCGTCGA chrIII:4237901-4237981 48 2.45e-04 GTAAGAGAGT GAGAGAGT GCAGAGAGTG chrV:6228529-6228609 26 2.45e-04 TTGGAAAATT GAGACAGA ATAGGAATTG chrII:1247107-1247187 53 2.45e-04 ggaacgggac gagagagt gaggagacgc chrV:11083780-11083860 15 2.45e-04 AGGACTTTTT GAGAGAGT ATTTATTCCT chrII:10136870-10136950 18 2.75e-04 TCAAACAAAA GAGCAAGA ACAGTGGGGC chrIII:3867502-3867582 4 3.05e-04 TGC GAAAGAAA TCGAATTCAA chrIII:4568709-4568789 30 3.05e-04 GCGGAATTGC GAGAAACA CGTGCGGCGC chrII:14438254-14438334 32 3.05e-04 ATGTTAGGAG GAGAAACA CAGCGGACGA chrIV:14875125-14875205 60 3.36e-04 AACATACAAC GAGACAAA CACACACAGT chrV:14501324-14501404 9 3.66e-04 TGTGGGCA CAGAAAAA TGACACACTA chrIII:5129585-5129665 22 3.81e-04 GTTAGATGGG GAAAAAGA CACTCGAGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGARA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:2974046-2974126 1.6e-05 70_[+1]_2 chrV:18723776-18723856 1.6e-05 65_[+1]_7 chrV:13565351-13565431 1.6e-05 49_[+1]_23 chrI:10297956-10298036 1.6e-05 13_[+1]_59 chrI:9988925-9989005 1.6e-05 41_[+1]_31 chrIV:6785289-6785369 1.6e-05 12_[+1]_60 chrIV:6648857-6648937 1.6e-05 67_[+1]_5 chrI:11202466-11202546 1.6e-05 21_[+1]_51 chrIII:12617080-12617160 1.6e-05 23_[+1]_49 chrIII:8136651-8136731 1.6e-05 46_[+1]_26 chrIII:9358576-9358656 1.6e-05 [+1]_72 chrX:16634838-16634918 3.1e-05 70_[+1]_2 chrX:8386136-8386216 3.1e-05 19_[+1]_53 chrV:9424620-9424700 3.1e-05 50_[+1]_22 chrI:13372936-13373016 3.1e-05 54_[+1]_18 chrI:7128378-7128458 3.1e-05 52_[+1]_20 chrX:9410952-9411032 3.1e-05 8_[+1]_64 chrV:7035676-7035756 3.1e-05 40_[+1]_32 chrX:4209219-4209299 4.6e-05 33_[+1]_39 chrX:10766250-10766330 4.6e-05 38_[+1]_34 chrIV:12032642-12032722 4.6e-05 54_[+1]_18 chrIII:13780378-13780458 4.6e-05 39_[+1]_33 chrI:6105789-6105869 6.2e-05 69_[+1]_3 chrIV:6756620-6756700 6.2e-05 21_[+1]_51 chrII:11759468-11759548 6.2e-05 69_[+1]_3 chrX:12670540-12670620 6.2e-05 1_[+1]_71 chrI:1958518-1958598 6.2e-05 9_[+1]_63 chrM:2928-3008 6.2e-05 9_[+1]_63 chrI:14625798-14625878 6.2e-05 15_[+1]_57 chrIV:11082890-11082970 7.7e-05 67_[+1]_5 chrIV:5754155-5754235 7.7e-05 63_[+1]_9 chrII:13291880-13291960 7.7e-05 52_[+1]_20 chrV:11212937-11213017 7.7e-05 65_[+1]_7 chrI:9525143-9525223 7.7e-05 36_[+1]_36 chrI:5311876-5311956 9.2e-05 58_[+1]_14 chrX:11546636-11546716 9.2e-05 37_[+1]_35 chrV:17951452-17951532 0.00012 55_[+1]_17 chrII:13335257-13335337 0.00012 41_[+1]_31 chrX:16726961-16727041 0.00012 63_[+1]_9 chrI:1836892-1836972 0.00012 58_[+1]_14 chrII:11635055-11635135 0.00012 44_[+1]_28 chrI:7942725-7942805 0.00012 38_[+1]_34 chrI:6882184-6882264 0.00012 71_[+1]_1 chrII:8107271-8107351 0.00014 26_[+1]_46 chrIII:354785-354865 0.00018 14_[+1]_58 chrV:10466823-10466903 0.0002 53_[+1]_19 chrI:14721583-14721663 0.00021 3_[+1]_69 chrIII:5715706-5715786 0.00021 35_[+1]_37 chrIII:4237901-4237981 0.00025 47_[+1]_25 chrV:6228529-6228609 0.00025 25_[+1]_47 chrII:1247107-1247187 0.00025 52_[+1]_20 chrV:11083780-11083860 0.00025 14_[+1]_58 chrII:10136870-10136950 0.00028 17_[+1]_55 chrIII:3867502-3867582 0.00031 3_[+1]_69 chrIII:4568709-4568789 0.00031 29_[+1]_43 chrII:14438254-14438334 0.00031 31_[+1]_41 chrIV:14875125-14875205 0.00034 59_[+1]_13 chrV:14501324-14501404 0.00037 8_[+1]_64 chrIII:5129585-5129665 0.00038 21_[+1]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGARA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGAGARA width=8 seqs=59 chrII:2974046-2974126 ( 71) GAGAGAGA 1 chrV:18723776-18723856 ( 66) GAGAGAGA 1 chrV:13565351-13565431 ( 50) GAGAGAGA 1 chrI:10297956-10298036 ( 14) GAGAGAGA 1 chrI:9988925-9989005 ( 42) GAGAGAGA 1 chrIV:6785289-6785369 ( 13) GAGAGAGA 1 chrIV:6648857-6648937 ( 68) GAGAGAGA 1 chrI:11202466-11202546 ( 22) GAGAGAGA 1 chrIII:12617080-12617160 ( 24) GAGAGAGA 1 chrIII:8136651-8136731 ( 47) GAGAGAGA 1 chrIII:9358576-9358656 ( 1) GAGAGAGA 1 chrX:16634838-16634918 ( 71) GAGAGAAA 1 chrX:8386136-8386216 ( 20) GAGAGAAA 1 chrV:9424620-9424700 ( 51) GAGAGAAA 1 chrI:13372936-13373016 ( 55) GAGAGAAA 1 chrI:7128378-7128458 ( 53) GAGAGAAA 1 chrX:9410952-9411032 ( 9) GAGAGAAA 1 chrV:7035676-7035756 ( 41) GAGAGAAA 1 chrX:4209219-4209299 ( 34) GAGAAAGA 1 chrX:10766250-10766330 ( 39) GAGAAAGA 1 chrIV:12032642-12032722 ( 55) GAGAAAGA 1 chrIII:13780378-13780458 ( 40) GAGAAAGA 1 chrI:6105789-6105869 ( 70) GAGAAAAA 1 chrIV:6756620-6756700 ( 22) GAGAAAAA 1 chrII:11759468-11759548 ( 70) GAGAAAAA 1 chrX:12670540-12670620 ( 2) GAGAAAAA 1 chrI:1958518-1958598 ( 10) GAGAAAAA 1 chrM:2928-3008 ( 10) GAGAAAAA 1 chrI:14625798-14625878 ( 16) GAGAAAAA 1 chrIV:11082890-11082970 ( 68) GACAGAGA 1 chrIV:5754155-5754235 ( 64) GACAGAGA 1 chrII:13291880-13291960 ( 53) GACAGAGA 1 chrV:11212937-11213017 ( 66) GACAGAGA 1 chrI:9525143-9525223 ( 37) GACAGAGA 1 chrI:5311876-5311956 ( 59) GACAGAAA 1 chrX:11546636-11546716 ( 38) GACAGAAA 1 chrV:17951452-17951532 ( 56) CAGAGAGA 1 chrII:13335257-13335337 ( 42) CAGAGAGA 1 chrX:16726961-16727041 ( 64) GAGCGAGA 1 chrI:1836892-1836972 ( 59) CAGAGAGA 1 chrII:11635055-11635135 ( 45) GAGCGAGA 1 chrI:7942725-7942805 ( 39) GAGCGAGA 1 chrI:6882184-6882264 ( 72) CAGAGAGA 1 chrII:8107271-8107351 ( 27) GAGAGACA 1 chrIII:354785-354865 ( 15) GAGCGAAA 1 chrV:10466823-10466903 ( 54) GAAAGAGA 1 chrI:14721583-14721663 ( 4) GACAAAAA 1 chrIII:5715706-5715786 ( 36) GACAAAAA 1 chrIII:4237901-4237981 ( 48) GAGAGAGT 1 chrV:6228529-6228609 ( 26) GAGACAGA 1 chrII:1247107-1247187 ( 53) GAGAGAGT 1 chrV:11083780-11083860 ( 15) GAGAGAGT 1 chrII:10136870-10136950 ( 18) GAGCAAGA 1 chrIII:3867502-3867582 ( 4) GAAAGAAA 1 chrIII:4568709-4568789 ( 30) GAGAAACA 1 chrII:14438254-14438334 ( 32) GAGAAACA 1 chrIV:14875125-14875205 ( 60) GAGACAAA 1 chrV:14501324-14501404 ( 9) CAGAAAAA 1 chrIII:5129585-5129665 ( 22) GAAAAAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGARA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2475 E= 3.2e-021 -1253 -155 185 -1253 201 -1253 -1253 -1253 -228 -70 165 -1253 189 -155 -1253 -1253 30 -287 138 -1253 201 -1253 -1253 -1253 59 -229 118 -1253 194 -1253 -1253 -230 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGARA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 59 E= 3.2e-021 0.000000 0.084746 0.915254 0.000000 1.000000 0.000000 0.000000 0.000000 0.050847 0.152542 0.796610 0.000000 0.915254 0.084746 0.000000 0.000000 0.305085 0.033898 0.661017 0.000000 1.000000 0.000000 0.000000 0.000000 0.372881 0.050847 0.576271 0.000000 0.949153 0.000000 0.000000 0.050847 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGAGARA MEME-1 regular expression -------------------------------------------------------------------------------- GAGA[GA]A[GA]A -------------------------------------------------------------------------------- Time 6.38 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTCTCTC MEME-2 width = 8 sites = 76 llr = 559 E-value = 1.9e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 3:11:::: pos.-specific C 1929:7:9 probability G :1:::::1 matrix T 6:7:a3a: bits 2.0 1.8 ** * 1.6 ** * 1.4 * ** ** Relative 1.2 * ***** Entropy 1.0 * ***** (10.6 bits) 0.8 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTCTCTC consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:10466823-10466903 9 1.48e-05 TTTTGGTG TCTCTCTC TATCTCTCGA chrIV:14610978-14611058 72 1.48e-05 CTTTTGAACT TCTCTCTC C chrI:4699420-4699500 56 1.48e-05 CTGTCTAATG TCTCTCTC CGAGCTTGAG chrI:2299624-2299704 19 1.48e-05 GTCGGACCAT TCTCTCTC TCTCGCTTTT chrX:16147930-16148010 19 1.48e-05 AGGGCCCCTC TCTCTCTC ACTGGGCTAT chrX:13950789-13950869 37 1.48e-05 AGTTTCCAAC TCTCTCTC ATTTTGCTTG chrII:4908353-4908433 24 1.48e-05 GTCTTGATGA TCTCTCTC GGCGTCTCTC chrI:397867-397947 25 1.48e-05 GTCTGCACCC TCTCTCTC GTCGCTCCAA chrII:203236-203316 47 1.48e-05 TGCTCCTCTC TCTCTCTC AGCGGTTCTC chrIII:9358576-9358656 24 1.48e-05 ACAAGAAGAA TCTCTCTC ATACATACTG chrV:18723776-18723856 8 2.94e-05 CTCTGCC ACTCTCTC ACATTTCTGC chrIII:13718626-13718706 7 2.94e-05 GCACGC ACTCTCTC AGTTTCTCAC chrX:5812270-5812350 13 2.94e-05 GCCTATGTGT ACTCTCTC GGTTTTTCCG chrIV:5169414-5169494 3 2.94e-05 CC ACTCTCTC AACCAACCTA chrII:10204805-10204885 32 2.94e-05 TCCAACACAT ACTCTCTC TGCGATCCCG chrX:11605936-11606016 24 4.43e-05 TCATAAAGGG TCTCTTTC GCAATGTGTC chrI:6781661-6781741 60 4.43e-05 TAGTGACCAG TCTCTTTC GTATGCAGAA chrX:10766450-10766530 23 4.43e-05 CTGCGTATGT TCTCTTTC TAATGCCAGT chrX:13700888-13700968 37 4.43e-05 AATGTCTACG TCTCTTTC CTTACTCGCC chrX:16726961-16727041 8 4.43e-05 CCGTGTT TCTCTTTC TCGGCGAgtg chrI:5313333-5313413 4 4.43e-05 CCT TCTCTTTC TACCCCCCTT chrII:9285048-9285128 71 4.43e-05 TTCGCCGACG TCTCTTTC CG chrIII:3672978-3673058 56 4.43e-05 TGTCTGCGTC TCTCTTTC TCTCTATAGA chrI:6882184-6882264 25 4.43e-05 CATCTTTTTG TCTCTTTC ACTCTACTCT chrX:949604-949684 55 5.90e-05 GGGTGctctc tccctctc ttcatctcac chrV:1474682-1474762 8 5.90e-05 TCTCCGC TCCCTCTC CTCTACTTGT chrV:9731021-9731101 48 5.90e-05 catcttctct tccctctc atctcGGCCC chrX:13665526-13665606 18 8.84e-05 CCACTAGTAT ACTCTTTC GTAGCACGGA chrX:16961585-16961665 58 8.84e-05 GCTGTGTGAC CCTCTCTC TGTATACTCC chrIV:6576828-6576908 22 8.84e-05 GGGTGAGACC CCTCTCTC CCGATGTTGT chrIV:6097482-6097562 57 8.84e-05 TTCACACGTT CCTCTCTC AAGCATTTTG chrX:10568707-10568787 32 1.19e-04 TCCCATTCTA TGTCTCTC TATTCCTCTG chrX:16612494-16612574 44 1.19e-04 CGTTCCTTCT TCTCTCTG cacacacaca chrIII:4475608-4475688 7 1.19e-04 AGAAGA TGTCTCTC ACGCGCTGTG chrIV:2219594-2219674 51 1.19e-04 ACGTGGACGT TGTCTCTC TGTTGGAGTA chrIV:6646190-6646270 9 1.19e-04 TCTTCCAA TCTCTCTG TTTAAAGTGC chrX:13145290-13145370 33 1.48e-04 CACACTCCGC ACCCTCTC ACACACTCTC chrIV:7845646-7845726 9 1.48e-04 CAAGGCAC ACCCTCTC CGCCTCCTTC chrV:14501324-14501404 47 1.48e-04 TCACTCGTAT ACCCTCTC CCTCACTCAA chrX:11546636-11546716 47 1.48e-04 TGACAGAAAC ACCCTCTC GACACACAAG chrX:13144392-13144472 73 1.63e-04 GGGCTGCCCG TCCCTTTC chrV:11083780-11083860 30 1.77e-04 AGTATTTATT CCTCTTTC TCTTCTTTTT chrIV:4445913-4445993 25 2.07e-04 AAAAAGGAGG AGTCTCTC GTTTGCGCGC chrX:2212244-2212324 38 2.07e-04 GTTACGTGCC ACTCTCTG TACTGCGCGA chrX:14753608-14753688 33 2.22e-04 CGCACCACTC ACACTCTC CCGGCCGCCG chrX:14102166-14102246 43 2.22e-04 TCCGTTTACC ACACTCTC TTACCTCGTT chrI:10539338-10539418 2 2.22e-04 C ACACTCTC TTATCGTCCA chrII:9984966-9985046 19 2.22e-04 TTATTGACAA ACACTCTC TTCATTTTGG chrI:7952556-7952636 26 2.22e-04 TCGCTAGCTC ACACTCTC ACAAAACAGA chrI:6105789-6105869 36 2.67e-04 CATGTCAGGT TCTCTTTG AAAAGAAGTG chrI:10297956-10298036 62 2.67e-04 CGTTATGTGG TCTCTTTG CTTCCCGCCG chrX:10766250-10766330 57 2.82e-04 AAGACAGCCA TCACTTTC TTTCCGCTGC chrX:13584063-13584143 60 3.11e-04 ACTGCCTCAC CCCCTCTC CCCCTATCTG chrIII:8937698-8937778 72 3.26e-04 TGGTTCAATA TCGCTCTC C chrX:17480116-17480196 44 3.26e-04 TGTCGGAGTC TCGCTCTC TATCCCACTT chrII:13335257-13335337 72 3.56e-04 GTGGAGTATA TCCCTCTG T chrV:13565351-13565431 22 4.46e-04 ATCGTTCTTT TCTCACTC AAGTACACCC chrI:14945776-14945856 31 4.46e-04 CTCTACTTCC CGTCTCTC CACACCGGTG chrV:16356044-16356124 38 4.46e-04 GACGTGTCTG CGTCTCTC GACGTCTTCT chrIV:14033030-14033110 33 4.46e-04 GGGATGAAGG ACTATCTC TAGACATCTG chrX:9102281-9102361 10 4.46e-04 CCCTCTCGT ACTCTTTG CCAGCGCTCT chrIII:558949-559029 43 4.46e-04 CACACGCTCT TCTCACTC GTCACCTGTA chrM:12444-12524 21 4.75e-04 AGCCTTGAGG ACACTTTC ACAAATAGGT chrX:16682055-16682135 73 5.05e-04 TGGGTGTTAT TCTATTTC chrX:1302480-1302560 54 5.05e-04 CCTTCTGTGT GCTCTCTC GGATCCTTAC chrI:5311657-5311737 45 5.05e-04 CCACGTGCCG TCTATTTC TCCAATCGGC chrM:8355-8435 33 5.05e-04 ACGTAGAAGT TCTATTTC ATTAGAACAT chrI:1836892-1836972 24 5.21e-04 TGAGTTTGAG TGTCTCTG AGCGAGAGAG chrI:7128378-7128458 31 5.21e-04 ATGTTGTCTG TGTCTCTG TGTAGCGCTG chrI:7714024-7714104 44 5.21e-04 AAGCCGCCAG TGTCTCTG TTCTGCCTGT chrX:1344955-1345035 45 5.80e-04 AAAAATCTTG CCCCTTTC CGAATCTCGA chrI:10175378-10175458 36 5.80e-04 TCCCGCCACG CCCCTTTC CTCCCCCGTT chrX:410297-410377 30 6.10e-04 TTGTTTCTGC AGCCTCTC AAAAAGCGGA chrII:4376816-4376896 2 6.40e-04 a tctctctt cttctcCATT chrX:2242988-2243068 42 7.29e-04 AATGCCAACA TCTCTCGC GTCATCTCGA chrI:11202466-11202546 68 7.29e-04 CCAGTTGCAC TCTCCCTC CCTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:10466823-10466903 1.5e-05 8_[+2]_64 chrIV:14610978-14611058 1.5e-05 71_[+2]_1 chrI:4699420-4699500 1.5e-05 55_[+2]_17 chrI:2299624-2299704 1.5e-05 18_[+2]_54 chrX:16147930-16148010 1.5e-05 18_[+2]_54 chrX:13950789-13950869 1.5e-05 36_[+2]_36 chrII:4908353-4908433 1.5e-05 23_[+2]_49 chrI:397867-397947 1.5e-05 24_[+2]_48 chrII:203236-203316 1.5e-05 46_[+2]_26 chrIII:9358576-9358656 1.5e-05 23_[+2]_49 chrV:18723776-18723856 2.9e-05 7_[+2]_65 chrIII:13718626-13718706 2.9e-05 6_[+2]_66 chrX:5812270-5812350 2.9e-05 12_[+2]_60 chrIV:5169414-5169494 2.9e-05 2_[+2]_70 chrII:10204805-10204885 2.9e-05 31_[+2]_41 chrX:11605936-11606016 4.4e-05 23_[+2]_49 chrI:6781661-6781741 4.4e-05 59_[+2]_13 chrX:10766450-10766530 4.4e-05 22_[+2]_50 chrX:13700888-13700968 4.4e-05 36_[+2]_36 chrX:16726961-16727041 4.4e-05 7_[+2]_65 chrI:5313333-5313413 4.4e-05 3_[+2]_69 chrII:9285048-9285128 4.4e-05 70_[+2]_2 chrIII:3672978-3673058 4.4e-05 55_[+2]_17 chrI:6882184-6882264 4.4e-05 24_[+2]_48 chrX:949604-949684 5.9e-05 54_[+2]_18 chrV:1474682-1474762 5.9e-05 7_[+2]_65 chrV:9731021-9731101 5.9e-05 47_[+2]_25 chrX:13665526-13665606 8.8e-05 17_[+2]_55 chrX:16961585-16961665 8.8e-05 57_[+2]_15 chrIV:6576828-6576908 8.8e-05 21_[+2]_51 chrIV:6097482-6097562 8.8e-05 56_[+2]_16 chrX:10568707-10568787 0.00012 31_[+2]_41 chrX:16612494-16612574 0.00012 43_[+2]_29 chrIII:4475608-4475688 0.00012 6_[+2]_66 chrIV:2219594-2219674 0.00012 50_[+2]_22 chrIV:6646190-6646270 0.00012 8_[+2]_64 chrX:13145290-13145370 0.00015 32_[+2]_40 chrIV:7845646-7845726 0.00015 8_[+2]_64 chrV:14501324-14501404 0.00015 46_[+2]_26 chrX:11546636-11546716 0.00015 46_[+2]_26 chrX:13144392-13144472 0.00016 72_[+2] chrV:11083780-11083860 0.00018 29_[+2]_43 chrIV:4445913-4445993 0.00021 24_[+2]_48 chrX:2212244-2212324 0.00021 37_[+2]_35 chrX:14753608-14753688 0.00022 32_[+2]_40 chrX:14102166-14102246 0.00022 42_[+2]_30 chrI:10539338-10539418 0.00022 1_[+2]_71 chrII:9984966-9985046 0.00022 18_[+2]_54 chrI:7952556-7952636 0.00022 25_[+2]_47 chrI:6105789-6105869 0.00027 35_[+2]_37 chrI:10297956-10298036 0.00027 61_[+2]_11 chrX:10766250-10766330 0.00028 56_[+2]_16 chrX:13584063-13584143 0.00031 59_[+2]_13 chrIII:8937698-8937778 0.00033 71_[+2]_1 chrX:17480116-17480196 0.00033 43_[+2]_29 chrII:13335257-13335337 0.00036 71_[+2]_1 chrV:13565351-13565431 0.00045 21_[+2]_51 chrI:14945776-14945856 0.00045 30_[+2]_42 chrV:16356044-16356124 0.00045 37_[+2]_35 chrIV:14033030-14033110 0.00045 32_[+2]_40 chrX:9102281-9102361 0.00045 9_[+2]_63 chrIII:558949-559029 0.00045 42_[+2]_30 chrM:12444-12524 0.00048 20_[+2]_52 chrX:16682055-16682135 0.00051 72_[+2] chrX:1302480-1302560 0.00051 53_[+2]_19 chrI:5311657-5311737 0.00051 44_[+2]_28 chrM:8355-8435 0.00051 32_[+2]_40 chrI:1836892-1836972 0.00052 23_[+2]_49 chrI:7128378-7128458 0.00052 30_[+2]_42 chrI:7714024-7714104 0.00052 43_[+2]_29 chrX:1344955-1345035 0.00058 44_[+2]_28 chrI:10175378-10175458 0.00058 35_[+2]_37 chrX:410297-410377 0.00061 29_[+2]_43 chrII:4376816-4376896 0.00064 1_[+2]_71 chrX:2242988-2243068 0.00073 41_[+2]_31 chrI:11202466-11202546 0.00073 67_[+2]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTCTCTC width=8 seqs=76 chrV:10466823-10466903 ( 9) TCTCTCTC 1 chrIV:14610978-14611058 ( 72) TCTCTCTC 1 chrI:4699420-4699500 ( 56) TCTCTCTC 1 chrI:2299624-2299704 ( 19) TCTCTCTC 1 chrX:16147930-16148010 ( 19) TCTCTCTC 1 chrX:13950789-13950869 ( 37) TCTCTCTC 1 chrII:4908353-4908433 ( 24) TCTCTCTC 1 chrI:397867-397947 ( 25) TCTCTCTC 1 chrII:203236-203316 ( 47) TCTCTCTC 1 chrIII:9358576-9358656 ( 24) TCTCTCTC 1 chrV:18723776-18723856 ( 8) ACTCTCTC 1 chrIII:13718626-13718706 ( 7) ACTCTCTC 1 chrX:5812270-5812350 ( 13) ACTCTCTC 1 chrIV:5169414-5169494 ( 3) ACTCTCTC 1 chrII:10204805-10204885 ( 32) ACTCTCTC 1 chrX:11605936-11606016 ( 24) TCTCTTTC 1 chrI:6781661-6781741 ( 60) TCTCTTTC 1 chrX:10766450-10766530 ( 23) TCTCTTTC 1 chrX:13700888-13700968 ( 37) TCTCTTTC 1 chrX:16726961-16727041 ( 8) TCTCTTTC 1 chrI:5313333-5313413 ( 4) TCTCTTTC 1 chrII:9285048-9285128 ( 71) TCTCTTTC 1 chrIII:3672978-3673058 ( 56) TCTCTTTC 1 chrI:6882184-6882264 ( 25) TCTCTTTC 1 chrX:949604-949684 ( 55) TCCCTCTC 1 chrV:1474682-1474762 ( 8) TCCCTCTC 1 chrV:9731021-9731101 ( 48) TCCCTCTC 1 chrX:13665526-13665606 ( 18) ACTCTTTC 1 chrX:16961585-16961665 ( 58) CCTCTCTC 1 chrIV:6576828-6576908 ( 22) CCTCTCTC 1 chrIV:6097482-6097562 ( 57) CCTCTCTC 1 chrX:10568707-10568787 ( 32) TGTCTCTC 1 chrX:16612494-16612574 ( 44) TCTCTCTG 1 chrIII:4475608-4475688 ( 7) TGTCTCTC 1 chrIV:2219594-2219674 ( 51) TGTCTCTC 1 chrIV:6646190-6646270 ( 9) TCTCTCTG 1 chrX:13145290-13145370 ( 33) ACCCTCTC 1 chrIV:7845646-7845726 ( 9) ACCCTCTC 1 chrV:14501324-14501404 ( 47) ACCCTCTC 1 chrX:11546636-11546716 ( 47) ACCCTCTC 1 chrX:13144392-13144472 ( 73) TCCCTTTC 1 chrV:11083780-11083860 ( 30) CCTCTTTC 1 chrIV:4445913-4445993 ( 25) AGTCTCTC 1 chrX:2212244-2212324 ( 38) ACTCTCTG 1 chrX:14753608-14753688 ( 33) ACACTCTC 1 chrX:14102166-14102246 ( 43) ACACTCTC 1 chrI:10539338-10539418 ( 2) ACACTCTC 1 chrII:9984966-9985046 ( 19) ACACTCTC 1 chrI:7952556-7952636 ( 26) ACACTCTC 1 chrI:6105789-6105869 ( 36) TCTCTTTG 1 chrI:10297956-10298036 ( 62) TCTCTTTG 1 chrX:10766250-10766330 ( 57) TCACTTTC 1 chrX:13584063-13584143 ( 60) CCCCTCTC 1 chrIII:8937698-8937778 ( 72) TCGCTCTC 1 chrX:17480116-17480196 ( 44) TCGCTCTC 1 chrII:13335257-13335337 ( 72) TCCCTCTG 1 chrV:13565351-13565431 ( 22) TCTCACTC 1 chrI:14945776-14945856 ( 31) CGTCTCTC 1 chrV:16356044-16356124 ( 38) CGTCTCTC 1 chrIV:14033030-14033110 ( 33) ACTATCTC 1 chrX:9102281-9102361 ( 10) ACTCTTTG 1 chrIII:558949-559029 ( 43) TCTCACTC 1 chrM:12444-12524 ( 21) ACACTTTC 1 chrX:16682055-16682135 ( 73) TCTATTTC 1 chrX:1302480-1302560 ( 54) GCTCTCTC 1 chrI:5311657-5311737 ( 45) TCTATTTC 1 chrM:8355-8435 ( 33) TCTATTTC 1 chrI:1836892-1836972 ( 24) TGTCTCTG 1 chrI:7128378-7128458 ( 31) TGTCTCTG 1 chrI:7714024-7714104 ( 44) TGTCTCTG 1 chrX:1344955-1345035 ( 45) CCCCTTTC 1 chrI:10175378-10175458 ( 36) CCCCTTTC 1 chrX:410297-410377 ( 30) AGCCTCTC 1 chrII:4376816-4376896 ( 2) TCTCTCTT 1 chrX:2242988-2243068 ( 42) TCTCTCGC 1 chrI:11202466-11202546 ( 68) TCTCCCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.80188 E= 1.9e-016 16 -107 -427 124 -1289 181 -95 -1289 -143 -54 -327 150 -223 193 -1289 -1289 -323 -423 -1289 194 -1289 152 -1289 21 -1289 -1289 -427 198 -1289 179 -95 -425 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 76 E= 1.9e-016 0.276316 0.118421 0.013158 0.592105 0.000000 0.868421 0.131579 0.000000 0.092105 0.171053 0.026316 0.710526 0.052632 0.947368 0.000000 0.000000 0.026316 0.013158 0.000000 0.960526 0.000000 0.710526 0.000000 0.289474 0.000000 0.000000 0.013158 0.986842 0.000000 0.855263 0.131579 0.013158 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCTC MEME-2 regular expression -------------------------------------------------------------------------------- [TA]CTCT[CT]TC -------------------------------------------------------------------------------- Time 10.01 secs. ******************************************************************************** ******************************************************************************** MOTIF AGACGCAG MEME-3 width = 8 sites = 17 llr = 175 E-value = 7.7e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGACGCAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A a:a:1:a: pos.-specific C :2:a:a:: probability G :8::9::a matrix T :::::::: bits 2.0 * ** *** 1.8 * ** *** 1.6 * ** *** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (14.8 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGACGCAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:6781661-6781741 29 1.54e-05 CGAGAAAATA AGACGCAG ACATCGATAG chrIII:9054037-9054117 66 1.54e-05 CTACGGTTAG AGACGCAG ACAGCTA chrII:11759468-11759548 38 1.54e-05 CTGGCAACAG AGACGCAG ATTGTTGGAG chrX:12670540-12670620 58 1.54e-05 AATTGGTTGG AGACGCAG ATGAGAAAGC chrIV:1420277-1420357 19 1.54e-05 GTGAGTGAGG AGACGCAG TGAAGCGCGC chrI:1836892-1836972 46 1.54e-05 AGAGAGCGCG AGACGCAG AGAACCAGAG chrIV:10342564-10342644 18 1.54e-05 GATTGATAAG AGACGCAG ACCGCAAGAT chrX:16961585-16961665 28 1.54e-05 CAGGCGCAAG AGACGCAG ACAGTACGAG chrII:1247107-1247187 65 1.54e-05 gagagtgagg agacgcag agcgggag chrII:14405314-14405394 57 1.54e-05 GTAAATCGAG AGACGCAG ACGGCGTAGA chrII:9491122-9491202 21 1.54e-05 GGTTATGAAG AGACGCAG GTCACCTACG chrI:8000340-8000420 4 1.54e-05 AAC AGACGCAG ACATAATAAA chrV:1992477-1992557 26 1.54e-05 CCGAGCGCGG AGACGCAG GCTTTTCAAA chrIV:620488-620568 28 3.04e-05 CGTCTGCTTC ACACGCAG AAGGTCGCCG chrI:397867-397947 65 3.04e-05 ATGCCAACTA ACACGCAG TGTCCCCC chrIV:12032642-12032722 68 4.54e-05 AAAGAATGCG AGACACAG AGATG chrIV:14875125-14875205 69 6.00e-05 CGAGACAAAC ACACACAG TCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:6781661-6781741 1.5e-05 28_[+3]_44 chrIII:9054037-9054117 1.5e-05 65_[+3]_7 chrII:11759468-11759548 1.5e-05 37_[+3]_35 chrX:12670540-12670620 1.5e-05 57_[+3]_15 chrIV:1420277-1420357 1.5e-05 18_[+3]_54 chrI:1836892-1836972 1.5e-05 45_[+3]_27 chrIV:10342564-10342644 1.5e-05 17_[+3]_55 chrX:16961585-16961665 1.5e-05 27_[+3]_45 chrII:1247107-1247187 1.5e-05 64_[+3]_8 chrII:14405314-14405394 1.5e-05 56_[+3]_16 chrII:9491122-9491202 1.5e-05 20_[+3]_52 chrI:8000340-8000420 1.5e-05 3_[+3]_69 chrV:1992477-1992557 1.5e-05 25_[+3]_47 chrIV:620488-620568 3e-05 27_[+3]_45 chrI:397867-397947 3e-05 64_[+3]_8 chrIV:12032642-12032722 4.5e-05 67_[+3]_5 chrIV:14875125-14875205 6e-05 68_[+3]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGACGCAG width=8 seqs=17 chrI:6781661-6781741 ( 29) AGACGCAG 1 chrIII:9054037-9054117 ( 66) AGACGCAG 1 chrII:11759468-11759548 ( 38) AGACGCAG 1 chrX:12670540-12670620 ( 58) AGACGCAG 1 chrIV:1420277-1420357 ( 19) AGACGCAG 1 chrI:1836892-1836972 ( 46) AGACGCAG 1 chrIV:10342564-10342644 ( 18) AGACGCAG 1 chrX:16961585-16961665 ( 28) AGACGCAG 1 chrII:1247107-1247187 ( 65) AGACGCAG 1 chrII:14405314-14405394 ( 57) AGACGCAG 1 chrII:9491122-9491202 ( 21) AGACGCAG 1 chrI:8000340-8000420 ( 4) AGACGCAG 1 chrV:1992477-1992557 ( 26) AGACGCAG 1 chrIV:620488-620568 ( 28) ACACGCAG 1 chrI:397867-397947 ( 65) ACACGCAG 1 chrIV:12032642-12032722 ( 68) AGACACAG 1 chrIV:14875125-14875205 ( 69) ACACACAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1364 E= 7.7e-005 201 -1073 -1073 -1073 -1073 -49 170 -1073 201 -1073 -1073 -1073 -1073 201 -1073 -1073 -107 -1073 180 -1073 -1073 201 -1073 -1073 201 -1073 -1073 -1073 -1073 -1073 198 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 7.7e-005 1.000000 0.000000 0.000000 0.000000 0.000000 0.176471 0.823529 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.117647 0.000000 0.882353 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-3 regular expression -------------------------------------------------------------------------------- AGACGCAG -------------------------------------------------------------------------------- Time 14.53 secs. ******************************************************************************** ******************************************************************************** MOTIF TGYGYGCG MEME-4 width = 8 sites = 35 llr = 298 E-value = 4.3e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGYGYGCG MEME-4 Description -------------------------------------------------------------------------------- Simplified A 3::::::: pos.-specific C ::5:4:9: probability G :a:a1a:a matrix T 7:5:5:1: bits 2.0 * * * * 1.8 * * * * 1.6 * * * * 1.4 * * *** Relative 1.2 ** * *** Entropy 1.0 **** *** (12.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTGCG consensus A C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGYGYGCG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:10821856-10821936 50 1.61e-05 tgtatgtgtg tgtgtgcg tatgtgtgag chrI:4536121-4536201 20 1.61e-05 AGACAGGCAG TGTGTGCG GCGGAACACG chrX:6092203-6092283 8 1.61e-05 GCGCGTT TGTGTGCG AGAGTGTCGT chrI:1958518-1958598 25 1.61e-05 AAACGGGAAT TGTGTGCG GCGGTGTTGC chrI:14737442-14737522 46 1.61e-05 CTTTGCAAAA TGTGTGCG CACCACTTGC chrI:1835609-1835689 63 3.21e-05 GCGTGTTAGG TGCGTGCG TCAGCTAGCG chrI:14113224-14113304 33 3.21e-05 GTTGCAAAAT TGCGTGCG CCACTTGCAA chrV:16356044-16356124 9 3.21e-05 TGTGCAAA TGCGTGCG CGAGTGCGCA chrI:6173026-6173106 30 3.21e-05 GAAAAGAAGG TGCGTGCG CACTGAGCAA chrV:12303602-12303682 20 4.81e-05 TCTAGGCGGG TGTGCGCG CGCTTGTCGT chrI:2837931-2838011 2 4.81e-05 G TGTGCGCG CGCACGAGAG chrIII:13068446-13068526 59 6.40e-05 CCATCGTGGG TGCGCGCG CCGCACAGAA chrX:14818846-14818926 6 6.40e-05 ctttt tgcgcgcg tcgcatgcgt chrIV:4445913-4445993 36 6.40e-05 GTCTCTCGTT TGCGCGCG CTTTTGAGAG chrI:14721583-14721663 35 6.40e-05 CCCTTTGCAA TGCGCGCG CGCGGTTTTC chrIV:16382273-16382353 39 6.40e-05 CTACCACAGG TGCGCGCG AGTACGGGTG chrX:14102166-14102246 4 6.40e-05 GAA TGCGCGCG AAACAGCAAG chrIII:4171157-4171237 6 6.40e-05 TCATC TGCGCGCG GCATATCTGC chrIII:10461274-10461354 22 6.40e-05 CTGTGTAAAA TGCGCGCG GCACACTTGC chrII:7708727-7708807 26 6.40e-05 AACAATGCAA TGCGCGCG CACGGTTTTT chrIII:7854640-7854720 58 8.00e-05 GTGTATCAGA AGTGTGCG AGACTTGCGA chrIV:6756620-6756700 31 8.00e-05 GGAGAAAAAA AGTGTGCG GGGGCATTGC chrII:3521493-3521573 70 8.00e-05 GCAGGCCGAA AGTGTGCG CCA chrI:7942725-7942805 65 8.00e-05 GTGACGAAAT AGTGTGCG AATCGAGG chrX:5541198-5541278 69 8.00e-05 GAAGAGAAGT AGTGTGCG GAAG chrIV:1420277-1420357 30 1.27e-04 GACGCAGTGA AGCGCGCG CGCACGCGAC chrX:3423008-3423088 66 1.27e-04 ATTCTCGCTC AGCGCGCG TTCGCAT chrII:6234390-6234470 63 1.27e-04 GGGTGTGCCA AGCGCGCG TTCCACGTCA chrII:8561390-8561470 15 1.44e-04 ATCCCATCAC TGTGTGTG GGTCGCTACG chrIII:13718626-13718706 57 1.44e-04 TGCTCTCAGC TGTGTGTG GATGTCCTTT chrI:11203271-11203351 24 1.44e-04 ATCCAGAGGC TGTGTGTG TGGCACTTGA chrX:5475323-5475403 24 1.44e-04 agtatgtgag tgtgtgtg tgccgctagc chrV:19643178-19643258 27 2.08e-04 ACCCGGAAGC TGTGGGCG GCAGGCGAGC chrIII:3664384-3664464 9 2.08e-04 AGGGAGAA TGTGGGCG TGGCCTTCGC chrIII:10759202-10759282 59 2.41e-04 GCTCCACCGG AGTGTGTG ACACAGCGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGYGYGCG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:10821856-10821936 1.6e-05 49_[+4]_23 chrI:4536121-4536201 1.6e-05 19_[+4]_53 chrX:6092203-6092283 1.6e-05 7_[+4]_65 chrI:1958518-1958598 1.6e-05 24_[+4]_48 chrI:14737442-14737522 1.6e-05 45_[+4]_27 chrI:1835609-1835689 3.2e-05 62_[+4]_10 chrI:14113224-14113304 3.2e-05 32_[+4]_40 chrV:16356044-16356124 3.2e-05 8_[+4]_64 chrI:6173026-6173106 3.2e-05 29_[+4]_43 chrV:12303602-12303682 4.8e-05 19_[+4]_53 chrI:2837931-2838011 4.8e-05 1_[+4]_71 chrIII:13068446-13068526 6.4e-05 58_[+4]_14 chrX:14818846-14818926 6.4e-05 5_[+4]_67 chrIV:4445913-4445993 6.4e-05 35_[+4]_37 chrI:14721583-14721663 6.4e-05 34_[+4]_38 chrIV:16382273-16382353 6.4e-05 38_[+4]_34 chrX:14102166-14102246 6.4e-05 3_[+4]_69 chrIII:4171157-4171237 6.4e-05 5_[+4]_67 chrIII:10461274-10461354 6.4e-05 21_[+4]_51 chrII:7708727-7708807 6.4e-05 25_[+4]_47 chrIII:7854640-7854720 8e-05 57_[+4]_15 chrIV:6756620-6756700 8e-05 30_[+4]_42 chrII:3521493-3521573 8e-05 69_[+4]_3 chrI:7942725-7942805 8e-05 64_[+4]_8 chrX:5541198-5541278 8e-05 68_[+4]_4 chrIV:1420277-1420357 0.00013 29_[+4]_43 chrX:3423008-3423088 0.00013 65_[+4]_7 chrII:6234390-6234470 0.00013 62_[+4]_10 chrII:8561390-8561470 0.00014 14_[+4]_58 chrIII:13718626-13718706 0.00014 56_[+4]_16 chrI:11203271-11203351 0.00014 23_[+4]_49 chrX:5475323-5475403 0.00014 23_[+4]_49 chrV:19643178-19643258 0.00021 26_[+4]_46 chrIII:3664384-3664464 0.00021 8_[+4]_64 chrIII:10759202-10759282 0.00024 58_[+4]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGYGYGCG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGYGYGCG width=8 seqs=35 chrIV:10821856-10821936 ( 50) TGTGTGCG 1 chrI:4536121-4536201 ( 20) TGTGTGCG 1 chrX:6092203-6092283 ( 8) TGTGTGCG 1 chrI:1958518-1958598 ( 25) TGTGTGCG 1 chrI:14737442-14737522 ( 46) TGTGTGCG 1 chrI:1835609-1835689 ( 63) TGCGTGCG 1 chrI:14113224-14113304 ( 33) TGCGTGCG 1 chrV:16356044-16356124 ( 9) TGCGTGCG 1 chrI:6173026-6173106 ( 30) TGCGTGCG 1 chrV:12303602-12303682 ( 20) TGTGCGCG 1 chrI:2837931-2838011 ( 2) TGTGCGCG 1 chrIII:13068446-13068526 ( 59) TGCGCGCG 1 chrX:14818846-14818926 ( 6) TGCGCGCG 1 chrIV:4445913-4445993 ( 36) TGCGCGCG 1 chrI:14721583-14721663 ( 35) TGCGCGCG 1 chrIV:16382273-16382353 ( 39) TGCGCGCG 1 chrX:14102166-14102246 ( 4) TGCGCGCG 1 chrIII:4171157-4171237 ( 6) TGCGCGCG 1 chrIII:10461274-10461354 ( 22) TGCGCGCG 1 chrII:7708727-7708807 ( 26) TGCGCGCG 1 chrIII:7854640-7854720 ( 58) AGTGTGCG 1 chrIV:6756620-6756700 ( 31) AGTGTGCG 1 chrII:3521493-3521573 ( 70) AGTGTGCG 1 chrI:7942725-7942805 ( 65) AGTGTGCG 1 chrX:5541198-5541278 ( 69) AGTGTGCG 1 chrIV:1420277-1420357 ( 30) AGCGCGCG 1 chrX:3423008-3423088 ( 66) AGCGCGCG 1 chrII:6234390-6234470 ( 63) AGCGCGCG 1 chrII:8561390-8561470 ( 15) TGTGTGTG 1 chrIII:13718626-13718706 ( 57) TGTGTGTG 1 chrI:11203271-11203351 ( 24) TGTGTGTG 1 chrX:5475323-5475403 ( 24) TGTGTGTG 1 chrV:19643178-19643258 ( 27) TGTGGGCG 1 chrIII:3664384-3664464 ( 9) TGTGGGCG 1 chrIII:10759202-10759282 ( 59) AGTGTGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGYGYGCG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.84661 E= 4.3e-004 5 -1177 -1177 157 -1177 -1177 198 -1177 -1177 88 -1177 112 -1177 -1177 198 -1177 -1177 69 -215 112 -1177 -1177 198 -1177 -1177 179 -1177 -81 -1177 -1177 198 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGYGYGCG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 4.3e-004 0.257143 0.000000 0.000000 0.742857 0.000000 0.000000 1.000000 0.000000 0.000000 0.457143 0.000000 0.542857 0.000000 0.000000 1.000000 0.000000 0.000000 0.400000 0.057143 0.542857 0.000000 0.000000 1.000000 0.000000 0.000000 0.857143 0.000000 0.142857 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGYGYGCG MEME-4 regular expression -------------------------------------------------------------------------------- [TA]G[TC]G[TC]GCG -------------------------------------------------------------------------------- Time 18.00 secs. ******************************************************************************** ******************************************************************************** MOTIF ACACACAC MEME-5 width = 8 sites = 17 llr = 166 E-value = 6.0e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACACACAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A a1a:a:8: pos.-specific C :8:a:9:a probability G :1:::::: matrix T :::::12: bits 2.0 * *** * 1.8 * *** * 1.6 * **** * 1.4 * ****** Relative 1.2 * ****** Entropy 1.0 ******** (14.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACACACAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:13068446-13068526 29 1.43e-05 AAACGCTCAC ACACACAC TCATTTTCTC chrX:16612494-16612574 55 1.43e-05 CTCTCTGcac acacacac acatacacac chrII:13335493-13335573 19 1.43e-05 ATGCATACTG ACACACAC ACAGCAGCAT chrIII:8800179-8800259 14 1.43e-05 acatacacat acacacac catccattca chrX:3127795-3127875 44 1.43e-05 actcacacac acacacac tcacaaaaac chrX:3694351-3694431 18 1.43e-05 tagaacactc acacacac gcacacacac chrV:5676503-5676583 50 1.43e-05 CTGACAACAC ACACACAC ACAGACTTTC chrV:10717068-10717148 25 1.43e-05 GGTAGTGcac acacacac atacacacaT chrII:4579919-4579999 7 1.43e-05 acacac acacacac acacacacTC chrII:10136870-10136950 59 1.43e-05 TCTAGGAGCA ACACACAC TGGTGTTTAC chrX:13145290-13145370 41 2.87e-05 GCACCCTCTC ACACACTC TCGTCGGGCA chrI:9373077-9373157 51 2.87e-05 TCTTCAGTAG acacactc gcacacaaac chrV:8500530-8500610 20 5.77e-05 AAGCGACTGC AAACACAC TTAGCGACGA chrX:14312540-14312620 57 5.77e-05 GTGCAGACGC AGACACAC CAATTGCCCC chrX:13584063-13584143 44 5.77e-05 TCTCTACAAA AAACACAC TGCCTCACCC chrII:14250342-14250422 14 7.21e-05 TATCGCACAT ACACATAC GCGCATTGAG chrIII:5715706-5715786 71 1.01e-04 AGAGAGGAAG AGACACTC CA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:13068446-13068526 1.4e-05 28_[+5]_44 chrX:16612494-16612574 1.4e-05 54_[+5]_18 chrII:13335493-13335573 1.4e-05 18_[+5]_54 chrIII:8800179-8800259 1.4e-05 13_[+5]_59 chrX:3127795-3127875 1.4e-05 43_[+5]_29 chrX:3694351-3694431 1.4e-05 17_[+5]_55 chrV:5676503-5676583 1.4e-05 49_[+5]_23 chrV:10717068-10717148 1.4e-05 24_[+5]_48 chrII:4579919-4579999 1.4e-05 6_[+5]_66 chrII:10136870-10136950 1.4e-05 58_[+5]_14 chrX:13145290-13145370 2.9e-05 40_[+5]_32 chrI:9373077-9373157 2.9e-05 50_[+5]_22 chrV:8500530-8500610 5.8e-05 19_[+5]_53 chrX:14312540-14312620 5.8e-05 56_[+5]_16 chrX:13584063-13584143 5.8e-05 43_[+5]_29 chrII:14250342-14250422 7.2e-05 13_[+5]_59 chrIII:5715706-5715786 0.0001 70_[+5]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACACACAC width=8 seqs=17 chrIII:13068446-13068526 ( 29) ACACACAC 1 chrX:16612494-16612574 ( 55) ACACACAC 1 chrII:13335493-13335573 ( 19) ACACACAC 1 chrIII:8800179-8800259 ( 14) ACACACAC 1 chrX:3127795-3127875 ( 44) ACACACAC 1 chrX:3694351-3694431 ( 18) ACACACAC 1 chrV:5676503-5676583 ( 50) ACACACAC 1 chrV:10717068-10717148 ( 25) ACACACAC 1 chrII:4579919-4579999 ( 7) ACACACAC 1 chrII:10136870-10136950 ( 59) ACACACAC 1 chrX:13145290-13145370 ( 41) ACACACTC 1 chrI:9373077-9373157 ( 51) ACACACTC 1 chrV:8500530-8500610 ( 20) AAACACAC 1 chrX:14312540-14312620 ( 57) AGACACAC 1 chrX:13584063-13584143 ( 44) AAACACAC 1 chrII:14250342-14250422 ( 14) ACACATAC 1 chrIII:5715706-5715786 ( 71) AGACACTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.8333 E= 6.0e-001 201 -1073 -1073 -1073 -107 162 -111 -1073 201 -1073 -1073 -1073 -1073 201 -1073 -1073 201 -1073 -1073 -1073 -1073 192 -1073 -209 173 -1073 -1073 -51 -1073 201 -1073 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 6.0e-001 1.000000 0.000000 0.000000 0.000000 0.117647 0.764706 0.117647 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.941176 0.000000 0.058824 0.823529 0.000000 0.000000 0.176471 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACACACAC MEME-5 regular expression -------------------------------------------------------------------------------- ACACACAC -------------------------------------------------------------------------------- Time 21.40 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:10672728-10672808 7.66e-01 80 chrV:10671911-10671991 8.62e-01 80 chrV:7035676-7035756 1.78e-01 40_[+1(3.11e-05)]_32 chrI:2837931-2838011 4.20e-04 1_[+4(4.81e-05)]_71 chrIII:9358576-9358656 1.72e-04 [+1(1.57e-05)]_15_[+2(1.48e-05)]_49 chrV:8784644-8784724 1.01e-01 80 chrII:10136870-10136950 1.28e-03 58_[+5(1.43e-05)]_14 chrX:5541198-5541278 2.82e-02 68_[+4(8.00e-05)]_4 chrIII:12149902-12149982 4.08e-01 80 chrX:14571482-14571562 1.26e-01 80 chrX:2047693-2047773 3.59e-01 80 chrII:7034176-7034256 4.06e-01 80 chrX:15275748-15275828 2.02e-01 80 chrV:1992477-1992557 2.98e-02 25_[+3(1.54e-05)]_47 chrIV:12999281-12999361 8.54e-01 80 chrI:6175106-6175186 7.65e-01 80 chrI:14625798-14625878 1.75e-03 15_[+1(6.15e-05)]_57 chrIII:8136651-8136731 5.50e-02 46_[+1(1.57e-05)]_2_[+1(4.65e-05)]_\ 16 chrI:6882184-6882264 3.57e-03 24_[+2(4.43e-05)]_48 chrI:11670320-11670400 9.98e-01 80 chrI:9525143-9525223 3.17e-02 36_[+1(7.69e-05)]_36 chrV:11212937-11213017 9.94e-03 65_[+1(7.69e-05)]_7 chrII:8127502-8127582 3.26e-01 80 chrIV:3764158-3764238 6.15e-01 80 chrI:13028592-13028672 5.56e-01 80 chrII:6234390-6234470 2.36e-01 80 chrI:7952556-7952636 5.18e-02 80 chrI:8000340-8000420 1.23e-02 3_[+3(1.54e-05)]_69 chrM:2928-3008 1.90e-02 9_[+1(6.15e-05)]_63 chrII:4579919-4579999 8.97e-04 [+5(1.43e-05)]_[+5(1.43e-05)]_\ [+5(2.87e-05)]_56 chrII:10204805-10204885 4.10e-03 31_[+2(2.94e-05)]_41 chrII:13291880-13291960 1.05e-01 52_[+1(7.69e-05)]_20 chrIII:558949-559029 9.73e-02 80 chrV:14574206-14574286 4.21e-01 80 chrV:5302780-5302860 3.33e-01 80 chrX:3423008-3423088 1.83e-01 80 chrIII:12617080-12617160 3.51e-02 19_[+1(1.57e-05)]_53 chrM:8355-8435 4.87e-01 80 chrM:4980-5060 9.78e-01 80 chrX:15279421-15279501 1.85e-02 51_[+2(1.48e-05)]_[+2(1.48e-05)]_\ [+2(1.48e-05)]_5 chrII:203236-203316 2.97e-02 42_[+2(1.48e-05)]_30 chrIV:6646190-6646270 2.14e-01 80 chrIV:16400918-16400998 3.17e-01 80 chrI:7714024-7714104 1.20e-01 80 chrM:9102-9182 1.00e+00 80 chrX:5475323-5475403 4.71e-01 80 chrI:11202466-11202546 5.48e-03 17_[+1(1.57e-05)]_55 chrV:11083780-11083860 6.39e-02 80 chrV:12509817-12509897 3.76e-01 80 chrM:7172-7252 1.78e-01 80 chrX:4961743-4961823 7.13e-01 80 chrX:12179207-12179287 8.12e-01 80 chrV:10717068-10717148 9.35e-04 22_[+5(1.43e-05)]_50 chrIV:6648857-6648937 2.61e-02 65_[+1(1.57e-05)]_7 chrI:3248571-3248651 6.32e-01 80 chrM:6105-6185 9.79e-01 80 chrX:8201143-8201223 7.46e-01 80 chrX:2212244-2212324 3.13e-02 80 chrIII:3672978-3673058 9.78e-03 55_[+2(4.43e-05)]_17 chrV:5676503-5676583 1.92e-04 45_[+5(1.43e-05)]_[+3(6.00e-05)]_19 chrIII:13780378-13780458 2.52e-02 39_[+1(4.65e-05)]_33 chrIII:5129585-5129665 1.81e-02 80 chrI:7942725-7942805 1.49e-02 64_[+4(8.00e-05)]_8 chrM:4603-4683 9.81e-01 80 chrX:9410952-9411032 7.87e-03 8_[+1(3.11e-05)]_64 chrIV:7903510-7903590 2.00e-01 80 chrM:12444-12524 2.11e-01 80 chrI:10562661-10562741 5.96e-01 80 chrIV:14875125-14875205 9.53e-05 66_[+5(1.43e-05)]_6 chrI:7128378-7128458 2.47e-04 52_[+1(3.11e-05)]_20 chrIV:8782366-8782446 6.49e-02 80 chrII:9491122-9491202 1.56e-02 20_[+3(1.54e-05)]_52 chrX:9102281-9102361 5.54e-01 80 chrX:11004528-11004608 3.12e-01 80 chrX:10435636-10435716 3.03e-01 80 chrIV:3521131-3521211 7.19e-01 80 chrIII:9973213-9973293 5.92e-01 80 chrII:14405314-14405394 1.60e-02 56_[+3(1.54e-05)]_16 chrX:13144392-13144472 1.35e-02 80 chrII:14438254-14438334 2.38e-02 80 chrX:13584063-13584143 3.71e-03 43_[+5(5.77e-05)]_29 chrX:11546636-11546716 1.75e-04 37_[+1(9.19e-05)]_35 chrIV:11593561-11593641 2.03e-01 80 chrIII:10094781-10094861 7.08e-01 80 chrII:7708727-7708807 1.34e-02 25_[+4(6.40e-05)]_47 chrI:397867-397947 1.29e-03 24_[+2(1.48e-05)]_32_[+3(3.04e-05)]_\ 8 chrIV:12032642-12032722 1.05e-03 54_[+1(4.65e-05)]_5_[+3(4.54e-05)]_\ 5 chrIII:3664384-3664464 3.12e-02 80 chrI:11203271-11203351 5.80e-02 80 chrX:2536681-2536761 7.32e-01 80 chrII:4908353-4908433 1.47e-01 23_[+2(1.48e-05)]_49 chrII:9285048-9285128 1.17e-01 70_[+2(4.43e-05)]_2 chrII:11634191-11634271 8.50e-02 80 chrX:13950789-13950869 1.92e-02 36_[+2(1.48e-05)]_19_[+2(8.84e-05)]_\ 9 chrI:6173026-6173106 2.15e-03 29_[+4(3.21e-05)]_43 chrV:14501324-14501404 2.22e-03 80 chrII:11635055-11635135 3.18e-01 80 chrX:13225657-13225737 2.18e-01 80 chrI:4745338-4745418 4.65e-01 80 chrI:10175378-10175458 7.44e-01 80 chrII:14250342-14250422 2.98e-02 13_[+5(7.21e-05)]_38_[+5(7.21e-05)]_\ 13 chrI:13372936-13373016 2.17e-01 54_[+1(3.11e-05)]_18 chrIII:5715706-5715786 4.98e-03 80 chrII:9984966-9985046 3.84e-03 80 chrIV:5169414-5169494 1.69e-01 2_[+2(2.94e-05)]_70 chrIV:6785289-6785369 2.47e-02 6_[+1(1.57e-05)]_66 chrX:5812270-5812350 1.04e-01 12_[+2(2.94e-05)]_60 chrIV:6097482-6097562 1.76e-01 56_[+2(8.84e-05)]_16 chrIII:13718626-13718706 1.15e-03 6_[+2(2.94e-05)]_66 chrX:12175832-12175912 6.31e-01 80 chrIV:6576828-6576908 8.09e-02 21_[+2(8.84e-05)]_51 chrX:3694351-3694431 5.73e-03 17_[+5(1.43e-05)]_2_[+5(1.43e-05)]_\ 45 chrIV:5754155-5754235 2.35e-02 63_[+1(7.69e-05)]_9 chrIV:11026161-11026241 6.35e-01 80 chrIV:7488035-7488115 2.99e-01 80 chrV:9424620-9424700 3.59e-02 50_[+1(3.11e-05)]_22 chrIV:14033030-14033110 4.49e-01 80 chrII:1247107-1247187 1.72e-03 64_[+3(1.54e-05)]_8 chrV:6228529-6228609 2.21e-01 80 chrIV:7845646-7845726 5.17e-02 80 chrI:14737442-14737522 3.77e-02 23_[+4(1.61e-05)]_14_[+4(1.61e-05)]_\ 27 chrI:10769818-10769898 4.89e-02 14_[+1(1.57e-05)]_[+1(1.57e-05)]_\ [+1(1.57e-05)]_4_[+1(1.57e-05)]_[+1(1.57e-05)]_22 chrX:14312540-14312620 3.75e-04 50_[+3(1.54e-05)]_22 chrV:9731021-9731101 2.89e-01 47_[+2(5.90e-05)]_25 chrII:3521493-3521573 9.62e-02 69_[+4(8.00e-05)]_3 chrII:9356780-9356860 7.25e-01 80 chrX:16961585-16961665 2.69e-04 27_[+3(1.54e-05)]_22_[+2(8.84e-05)]_\ 15 chrX:16147930-16148010 2.14e-02 16_[+2(1.48e-05)]_56 chrI:2299624-2299704 1.72e-02 18_[+2(1.48e-05)]_54 chrII:11749641-11749721 4.40e-01 80 chrI:3842478-3842558 2.18e-01 80 chrIII:8417698-8417778 3.94e-01 80 chrV:20778383-20778463 4.05e-01 80 chrI:9373077-9373157 3.18e-03 50_[+5(2.87e-05)]_22 chrI:9988925-9989005 2.98e-05 46_[+3(1.54e-05)]_26 chrX:8386136-8386216 3.20e-02 8_[+1(7.69e-05)]_3_[+1(3.11e-05)]_\ 53 chrII:6491872-6491952 5.63e-01 80 chrX:13519242-13519322 6.39e-01 80 chrV:16356044-16356124 2.81e-02 8_[+4(3.21e-05)]_64 chrIV:2219594-2219674 2.42e-01 80 chrIV:10342564-10342644 1.47e-02 17_[+3(1.54e-05)]_55 chrI:5311657-5311737 1.45e-01 80 chrI:10539338-10539418 9.95e-02 80 chrI:5313333-5313413 2.83e-01 3_[+2(4.43e-05)]_69 chrI:4699420-4699500 3.55e-02 19_[+2(2.94e-05)]_28_[+2(1.48e-05)]_\ 17 chrX:3127795-3127875 1.58e-03 27_[+5(1.43e-05)]_2_[+5(1.43e-05)]_\ [+5(2.87e-05)]_27 chrI:10297956-10298036 7.91e-04 13_[+1(1.57e-05)]_59 chrI:14945776-14945856 3.01e-01 80 chrIII:4568709-4568789 7.26e-02 80 chrIII:10461274-10461354 4.34e-02 21_[+4(6.40e-05)]_51 chrIII:8800179-8800259 1.07e-02 13_[+5(1.43e-05)]_59 chrIII:4171157-4171237 4.76e-03 5_[+4(6.40e-05)]_67 chrX:13145290-13145370 2.37e-03 21_[+5(2.87e-05)]_11_[+5(2.87e-05)]_\ 32 chrI:1958518-1958598 3.23e-03 9_[+1(6.15e-05)]_7_[+4(1.61e-05)]_\ 48 chrII:4942528-4942608 8.65e-01 80 chrX:14102166-14102246 7.89e-04 3_[+4(6.40e-05)]_69 chrIV:14610978-14611058 9.12e-02 71_[+2(1.48e-05)]_1 chrII:5661249-5661329 7.25e-01 80 chrX:14753608-14753688 2.26e-02 80 chrI:1836892-1836972 1.22e-04 45_[+3(1.54e-05)]_27 chrIII:12612641-12612721 3.39e-01 80 chrI:14113224-14113304 1.17e-01 32_[+4(3.21e-05)]_40 chrIII:13062583-13062663 5.81e-01 80 chrV:19643178-19643258 3.10e-01 80 chrII:5662057-5662137 3.69e-01 80 chrIII:354785-354865 4.68e-02 80 chrIII:4237901-4237981 2.92e-01 80 chrV:1474682-1474762 3.41e-01 7_[+2(5.90e-05)]_65 chrX:6092203-6092283 9.82e-02 7_[+4(1.61e-05)]_65 chrV:13565351-13565431 4.78e-05 49_[+1(1.57e-05)]_23 chrV:18723776-18723856 1.32e-03 7_[+2(2.94e-05)]_10_[+2(2.94e-05)]_\ 28_[+1(1.57e-05)]_11 chrX:5429467-5429547 4.18e-01 80 chrX:1344955-1345035 3.59e-01 80 chrI:1068283-1068363 2.54e-01 80 chrX:15841234-15841314 6.12e-01 80 chrI:5311876-5311956 1.47e-01 58_[+1(9.19e-05)]_14 chrX:7823317-7823397 1.07e-01 80 chrX:16726961-16727041 8.36e-04 7_[+2(4.43e-05)]_65 chrIV:16382273-16382353 1.70e-02 38_[+4(6.40e-05)]_34 chrX:17480116-17480196 2.64e-01 80 chrI:14721583-14721663 3.28e-03 34_[+4(6.40e-05)]_38 chrI:8259518-8259598 8.84e-01 80 chrIV:1420277-1420357 5.20e-03 18_[+3(1.54e-05)]_54 chrX:1302480-1302560 8.86e-02 80 chrX:16056584-16056664 4.77e-01 80 chrV:10808055-10808135 4.61e-02 80 chrIV:14033997-14034077 6.79e-01 80 chrI:4536121-4536201 8.77e-03 19_[+4(1.61e-05)]_53 chrX:16682055-16682135 5.53e-01 80 chrII:8107271-8107351 5.42e-03 80 chrIV:11082890-11082970 6.76e-03 67_[+1(7.69e-05)]_5 chrIV:620488-620568 6.75e-02 27_[+3(3.04e-05)]_45 chrX:768211-768291 5.37e-02 80 chrI:2514330-2514410 9.20e-01 80 chrV:11314159-11314239 8.08e-01 80 chrX:4711876-4711956 4.98e-01 80 chrX:10766250-10766330 9.50e-03 38_[+1(4.65e-05)]_34 chrX:13700888-13700968 2.19e-02 36_[+2(4.43e-05)]_36 chrV:1871852-1871932 8.95e-01 80 chrX:12670540-12670620 9.56e-04 1_[+1(6.15e-05)]_48_[+3(1.54e-05)]_\ 15 chrIII:8937698-8937778 3.28e-02 80 chrI:1835609-1835689 1.02e-01 62_[+4(3.21e-05)]_10 chrII:11759468-11759548 1.81e-03 37_[+3(1.54e-05)]_24_[+1(6.15e-05)]_\ 3 chrIV:1595956-1596036 2.14e-01 80 chrII:8075505-8075585 6.57e-01 80 chrII:13335257-13335337 4.25e-05 46_[+3(1.54e-05)]_26 chrX:16634838-16634918 5.19e-02 70_[+1(3.11e-05)]_2 chrIII:4470921-4471001 9.48e-01 80 chrIII:4475608-4475688 3.89e-02 80 chrII:13335493-13335573 6.06e-04 18_[+5(1.43e-05)]_54 chrX:949604-949684 4.57e-02 54_[+2(5.90e-05)]_18 chrX:4209219-4209299 2.56e-02 33_[+1(4.65e-05)]_39 chrX:2242988-2243068 5.71e-01 80 chrII:2974046-2974126 4.12e-03 68_[+1(1.57e-05)]_4 chrV:12303602-12303682 2.30e-01 19_[+4(4.81e-05)]_53 chrIV:4445913-4445993 1.39e-02 35_[+4(6.40e-05)]_37 chrIV:2408581-2408661 8.94e-01 80 chrIV:6756620-6756700 1.14e-02 21_[+1(6.15e-05)]_1_[+4(8.00e-05)]_\ 42 chrX:11094161-11094241 3.63e-01 80 chrX:16612494-16612574 4.03e-05 52_[+5(1.43e-05)]_6_[+3(6.00e-05)]_\ 6 chrIII:10759202-10759282 7.83e-03 80 chrX:410297-410377 4.37e-01 80 chrII:8561390-8561470 1.60e-01 80 chrIV:390465-390545 5.27e-01 80 chrIII:9054037-9054117 4.80e-03 65_[+3(1.54e-05)]_7 chrX:10766450-10766530 1.27e-01 22_[+2(4.43e-05)]_50 chrI:6105789-6105869 9.81e-04 69_[+1(6.15e-05)]_3 chrX:6296535-6296615 6.67e-01 80 chrIII:7854640-7854720 4.41e-02 57_[+4(8.00e-05)]_15 chrX:13665526-13665606 6.71e-02 17_[+2(8.84e-05)]_55 chrIII:11371469-11371549 9.10e-01 80 chrIV:10821856-10821936 5.34e-02 49_[+4(1.61e-05)]_23 chrIV:9477747-9477827 4.35e-01 80 chrV:10466823-10466903 3.09e-04 8_[+2(1.48e-05)]_64 chrX:10568707-10568787 2.09e-01 80 chrI:4172154-4172234 7.93e-01 80 chrV:8500530-8500610 1.63e-02 19_[+5(5.77e-05)]_53 chrI:6781661-6781741 1.06e-04 28_[+3(1.54e-05)]_23_[+2(4.43e-05)]_\ 13 chrIV:11119202-11119282 5.13e-01 80 chrI:2410144-2410224 7.90e-01 80 chrX:11605936-11606016 1.94e-02 23_[+2(4.43e-05)]_49 chrIII:3867502-3867582 1.88e-01 80 chrX:14525869-14525949 4.69e-01 80 chrIV:8252988-8253068 5.35e-02 80 chrV:15873929-15874009 2.99e-01 80 chrX:14818846-14818926 7.59e-02 5_[+4(6.40e-05)]_67 chrII:4376816-4376896 4.87e-01 80 chrX:3970087-3970167 4.64e-01 80 chrIII:13068446-13068526 4.43e-05 26_[+5(1.43e-05)]_24_[+4(6.40e-05)]_\ 14 chrV:17951452-17951532 6.94e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************