******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:6047886-6047966 1.0000 80 chrI:6048094-6048174 1.0000 80 chrV:156204-156284 1.0000 80 chrI:1675882-1675962 1.0000 80 chrIV:4712595-4712675 1.0000 80 chrI:12899121-12899201 1.0000 80 chrIII:11093623-11093703 1.0000 80 chrIII:4862059-4862139 1.0000 80 chrIV:12653264-12653344 1.0000 80 chrI:1280227-1280307 1.0000 80 chrIV:17099269-17099349 1.0000 80 chrIV:17108358-17108438 1.0000 80 chrX:9917512-9917592 1.0000 80 chrIV:13289510-13289590 1.0000 80 chrX:9102309-9102389 1.0000 80 chrII:15008697-15008777 1.0000 80 chrI:6051193-6051273 1.0000 80 chrIII:13474682-13474762 1.0000 80 chrI:6151581-6151661 1.0000 80 chrI:13835187-13835267 1.0000 80 chrV:11504878-11504958 1.0000 80 chrI:1213501-1213581 1.0000 80 chrV:16553071-16553151 1.0000 80 chrII:1500580-1500660 1.0000 80 chrI:13418782-13418862 1.0000 80 chrV:16022756-16022836 1.0000 80 chrX:915710-915790 1.0000 80 chrV:4181885-4181965 1.0000 80 chrX:5205697-5205777 1.0000 80 chrIV:1687290-1687370 1.0000 80 chrII:8137478-8137558 1.0000 80 chrX:3379231-3379311 1.0000 80 chrIV:6747831-6747911 1.0000 80 chrV:14546008-14546088 1.0000 80 chrII:10714389-10714469 1.0000 80 chrI:12899322-12899402 1.0000 80 chrV:12649806-12649886 1.0000 80 chrIII:3424068-3424148 1.0000 80 chrIV:13487156-13487236 1.0000 80 chrIII:7858615-7858695 1.0000 80 chrI:2710632-2710712 1.0000 80 chrIII:11848480-11848560 1.0000 80 chrV:2603191-2603271 1.0000 80 chrI:4958824-4958904 1.0000 80 chrIII:12178265-12178345 1.0000 80 chrV:8784592-8784672 1.0000 80 chrIII:2697317-2697397 1.0000 80 chrIII:1540275-1540355 1.0000 80 chrIII:4905522-4905602 1.0000 80 chrV:3218797-3218877 1.0000 80 chrI:6760278-6760358 1.0000 80 chrM:5154-5234 1.0000 80 chrII:5228029-5228109 1.0000 80 chrII:5819828-5819908 1.0000 80 chrII:484600-484680 1.0000 80 chrIII:9808331-9808411 1.0000 80 chrIII:4343294-4343374 1.0000 80 chrX:2043481-2043561 1.0000 80 chrI:10161980-10162060 1.0000 80 chrX:2488587-2488667 1.0000 80 chrI:9955958-9956038 1.0000 80 chrX:7798499-7798579 1.0000 80 chrIV:4070956-4071036 1.0000 80 chrIII:11286250-11286330 1.0000 80 chrIII:10064309-10064389 1.0000 80 chrI:4215768-4215848 1.0000 80 chrIII:4986983-4987063 1.0000 80 chrI:14756438-14756518 1.0000 80 chrI:636761-636841 1.0000 80 chrIV:4702265-4702345 1.0000 80 chrI:2487865-2487945 1.0000 80 chrX:7569827-7569907 1.0000 80 chrIV:9777708-9777788 1.0000 80 chrIII:3322495-3322575 1.0000 80 chrV:14443602-14443682 1.0000 80 chrI:1989364-1989444 1.0000 80 chrIII:9114949-9115029 1.0000 80 chrII:7537768-7537848 1.0000 80 chrIII:13293101-13293181 1.0000 80 chrI:5659137-5659217 1.0000 80 chrIII:12673529-12673609 1.0000 80 chrX:8201443-8201523 1.0000 80 chrIII:12920068-12920148 1.0000 80 chrII:6097608-6097688 1.0000 80 chrV:10478322-10478402 1.0000 80 chrIV:10817177-10817257 1.0000 80 chrI:8511412-8511492 1.0000 80 chrX:11693254-11693334 1.0000 80 chrM:1827-1907 1.0000 80 chrIV:1347161-1347241 1.0000 80 chrI:3636643-3636723 1.0000 80 chrI:7711748-7711828 1.0000 80 chrX:11248147-11248227 1.0000 80 chrI:9393794-9393874 1.0000 80 chrI:11222179-11222259 1.0000 80 chrII:11393928-11394008 1.0000 80 chrM:3322-3402 1.0000 80 chrIV:8019907-8019987 1.0000 80 chrIV:13262921-13263001 1.0000 80 chrX:3227063-3227143 1.0000 80 chrIV:4042415-4042495 1.0000 80 chrI:5106172-5106252 1.0000 80 chrV:10031922-10032002 1.0000 80 chrII:9313424-9313504 1.0000 80 chrIII:10811227-10811307 1.0000 80 chrI:10469087-10469167 1.0000 80 chrI:5118899-5118979 1.0000 80 chrI:15052690-15052770 1.0000 80 chrV:16746774-16746854 1.0000 80 chrII:7810965-7811045 1.0000 80 chrX:4853175-4853255 1.0000 80 chrX:10990758-10990838 1.0000 80 chrX:2212313-2212393 1.0000 80 chrII:8748142-8748222 1.0000 80 chrIII:10856984-10857064 1.0000 80 chrIV:11315030-11315110 1.0000 80 chrII:7343815-7343895 1.0000 80 chrIV:12999291-12999371 1.0000 80 chrI:5281834-5281914 1.0000 80 chrII:2991822-2991902 1.0000 80 chrI:11609236-11609316 1.0000 80 chrIII:711184-711264 1.0000 80 chrI:13470399-13470479 1.0000 80 chrIV:6648788-6648868 1.0000 80 chrIII:8683865-8683945 1.0000 80 chrI:3176568-3176648 1.0000 80 chrII:476191-476271 1.0000 80 chrX:4254992-4255072 1.0000 80 chrI:13422627-13422707 1.0000 80 chrII:3482362-3482442 1.0000 80 chrII:14142489-14142569 1.0000 80 chrII:6383329-6383409 1.0000 80 chrIII:13359965-13360045 1.0000 80 chrIII:7088069-7088149 1.0000 80 chrV:20424949-20425029 1.0000 80 chrIII:13187906-13187986 1.0000 80 chrI:3059188-3059268 1.0000 80 chrI:10469287-10469367 1.0000 80 chrIII:6013205-6013285 1.0000 80 chrII:2454959-2455039 1.0000 80 chrI:9080113-9080193 1.0000 80 chrII:9025663-9025743 1.0000 80 chrII:15089579-15089659 1.0000 80 chrV:4964421-4964501 1.0000 80 chrIV:16995561-16995641 1.0000 80 chrX:2108331-2108411 1.0000 80 chrI:8369773-8369853 1.0000 80 chrIII:7198998-7199078 1.0000 80 chrV:10320340-10320420 1.0000 80 chrII:14142209-14142289 1.0000 80 chrX:9113969-9114049 1.0000 80 chrII:9491156-9491236 1.0000 80 chrII:202031-202111 1.0000 80 chrIV:12621620-12621700 1.0000 80 chrV:11845036-11845116 1.0000 80 chrV:13409243-13409323 1.0000 80 chrIII:6537333-6537413 1.0000 80 chrIII:9639458-9639538 1.0000 80 chrX:1853740-1853820 1.0000 80 chrIV:10197487-10197567 1.0000 80 chrIII:13293301-13293381 1.0000 80 chrI:7251576-7251656 1.0000 80 chrIV:16954625-16954705 1.0000 80 chrI:15013993-15014073 1.0000 80 chrIII:8144741-8144821 1.0000 80 chrIII:4196745-4196825 1.0000 80 chrI:8490934-8491014 1.0000 80 chrX:13225519-13225599 1.0000 80 chrI:7935795-7935875 1.0000 80 chrI:13421139-13421219 1.0000 80 chrV:10441306-10441386 1.0000 80 chrV:6107633-6107713 1.0000 80 chrX:2488793-2488873 1.0000 80 chrII:2752703-2752783 1.0000 80 chrV:7084875-7084955 1.0000 80 chrIII:3605857-3605937 1.0000 80 chrX:2793681-2793761 1.0000 80 chrI:10175357-10175437 1.0000 80 chrII:5836531-5836611 1.0000 80 chrV:6433738-6433818 1.0000 80 chrII:14857067-14857147 1.0000 80 chrIV:3521078-3521158 1.0000 80 chrX:1103882-1103962 1.0000 80 chrV:14423402-14423482 1.0000 80 chrV:11644298-11644378 1.0000 80 chrIII:6625435-6625515 1.0000 80 chrIII:13698019-13698099 1.0000 80 chrI:1261643-1261723 1.0000 80 chrIII:8529060-8529140 1.0000 80 chrIV:7816567-7816647 1.0000 80 chrIV:5860769-5860849 1.0000 80 chrX:5480237-5480317 1.0000 80 chrI:77939-78019 1.0000 80 chrX:3411770-3411850 1.0000 80 chrI:8125450-8125530 1.0000 80 chrIII:3476301-3476381 1.0000 80 chrIV:3803414-3803494 1.0000 80 chrII:9319539-9319619 1.0000 80 chrII:12022922-12023002 1.0000 80 chrIV:13263152-13263232 1.0000 80 chrII:7857623-7857703 1.0000 80 chrIV:14032734-14032814 1.0000 80 chrII:9968473-9968553 1.0000 80 chrX:13585002-13585082 1.0000 80 chrV:20749201-20749281 1.0000 80 chrIII:3695521-3695601 1.0000 80 chrI:4247554-4247634 1.0000 80 chrIII:8700729-8700809 1.0000 80 chrIV:6887864-6887944 1.0000 80 chrII:5649576-5649656 1.0000 80 chrM:8131-8211 1.0000 80 chrX:857799-857879 1.0000 80 chrIII:10123789-10123869 1.0000 80 chrI:11664964-11665044 1.0000 80 chrII:7879485-7879565 1.0000 80 chrI:7174496-7174576 1.0000 80 chrII:10538106-10538186 1.0000 80 chrIII:4912501-4912581 1.0000 80 chrIII:3499994-3500074 1.0000 80 chrIII:4037492-4037572 1.0000 80 chrI:10262258-10262338 1.0000 80 chrV:20763303-20763383 1.0000 80 chrIII:558953-559033 1.0000 80 chrIII:5803102-5803182 1.0000 80 chrIII:5102793-5102873 1.0000 80 chrII:3036585-3036665 1.0000 80 chrIII:10248650-10248730 1.0000 80 chrII:147660-147740 1.0000 80 chrIII:8250411-8250491 1.0000 80 chrI:1034353-1034433 1.0000 80 chrIII:11290686-11290766 1.0000 80 chrX:5818422-5818502 1.0000 80 chrV:15082457-15082537 1.0000 80 chrX:9637175-9637255 1.0000 80 chrII:2794497-2794577 1.0000 80 chrIII:13710613-13710693 1.0000 80 chrII:6858956-6859036 1.0000 80 chrIV:10085833-10085913 1.0000 80 chrV:12038959-12039039 1.0000 80 chrIII:4999010-4999090 1.0000 80 chrIII:8850806-8850886 1.0000 80 chrII:4095727-4095807 1.0000 80 chrI:3248466-3248546 1.0000 80 chrIV:9263960-9264040 1.0000 80 chrIII:7926275-7926355 1.0000 80 chrII:6734823-6734903 1.0000 80 chrV:11933372-11933452 1.0000 80 chrV:155398-155478 1.0000 80 chrI:11670293-11670373 1.0000 80 chrIII:5108956-5109036 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ceh-2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.258 C 0.238 G 0.237 T 0.268 Background letter frequencies (from file dataset with add-one prior applied): A 0.258 C 0.238 G 0.237 T 0.268 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGGCCKMG MEME-1 width = 8 sites = 79 llr = 671 E-value = 2.7e-058 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCCKMG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::25: pos.-specific C 3::aa:3: probability G :aa::5:a matrix T 7::::32: bits 2.1 ** * * 1.9 **** * 1.7 **** * 1.5 **** * Relative 1.2 **** * Entropy 1.0 ***** * (12.3 bits) 0.8 ***** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGGCCGAG consensus C TC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCKMG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:5108956-5109036 35 1.24e-05 TTGGAAACGA TGGCCGAG TCTGAATGGC chrIII:11290686-11290766 49 1.24e-05 ACACACCGGG TGGCCGAG TGGGGATTTC chrIV:6887864-6887944 22 1.24e-05 ACAAACGTGC TGGCCGAG AATGTTTATG chrIII:3695521-3695601 22 1.24e-05 AAAATAATGG TGGCCGAG TTTTTTTTCT chrII:9968473-9968553 50 1.24e-05 CCCATGGCCG TGGCCGAG TCTACAACTA chrII:14857067-14857147 27 1.24e-05 CCCGCTGCGG TGGCCGAG TCCCTGCCGG chrIII:12673529-12673609 37 1.24e-05 CACGGCGTGG TGGCCGAG ACCCCGACTC chrIII:10064309-10064389 8 1.24e-05 TCAAGCC TGGCCGAG GTGGCCGTGG chrI:6760278-6760358 41 1.24e-05 AGTTTCCACA TGGCCGAG CTATCTCGTG chrX:3379231-3379311 63 1.24e-05 GATTTGCGCA TGGCCGAG CCGGGAAGAA chrII:1500580-1500660 60 1.24e-05 TAAGGGCGGA TGGCCGAG AAAACTCTAT chrIV:12653264-12653344 24 1.24e-05 CTGGGTCTCG TGGCCGAG ATTCCGACAC chrII:147660-147740 3 2.38e-05 CT TGGCCGCG GCCGAGAGTG chrIII:5803102-5803182 17 2.38e-05 AATTTGTTTG TGGCCGCG GTGGCCTAGT chrX:2108331-2108411 62 2.38e-05 ACTGAGGCCG TGGCCGCG AAGAGGGGGA chrII:6383329-6383409 27 2.38e-05 TTTTTCCCGA TGGCCGCG GACTAGCCAT chrII:3482362-3482442 12 2.38e-05 AAAATATCCG TGGCCGCG GCCTAAGAAC chrI:13470399-13470479 68 2.38e-05 AAAACGCGCG TGGCCGCG AGGGG chrIV:4042415-4042495 30 2.38e-05 TCTTTTCTCG TGGCCGCG GCCTAGAAAT chrIII:1540275-1540355 9 2.38e-05 AATTCCCG TGGCCGCG GCCTAGAAAT chrX:915710-915790 28 2.38e-05 CCCTCCTTCT TGGCCGCG GACTAGGTTT chrV:16022756-16022836 55 2.38e-05 GGTGGCCGCG TGGCCGCG GACTAAGTGA chrI:13835187-13835267 22 2.38e-05 GGGAAAATGA TGGCCGCG GCCGCCATTT chrIII:4912501-4912581 34 3.77e-05 TTCTCGGCCG TGGCCTAG AATATTAGTC chrII:12022922-12023002 13 3.77e-05 AAACCACTGG TGGCCTAG AAAAATCACC chrII:9319539-9319619 37 3.77e-05 AAACAGCCAA TGGCCTAG AGTCCACCAA chrIV:7816567-7816647 23 3.77e-05 CACCACCGTG TGGCCTAG GAAACTCTTG chrIII:8529060-8529140 32 3.77e-05 GAATCGTCGC TGGCCTAG TTTTCTCTTT chrV:11644298-11644378 45 3.77e-05 CCAATGGCCG TGGCCTAG CTTTCTTGGT chrV:7084875-7084955 39 3.77e-05 ACGCGCCGGC TGGCCTAG AAACCAACCT chrII:2752703-2752783 48 3.77e-05 CGATTGCGCG TGGCCTAG CAGTGGAAAC chrV:6107633-6107713 37 3.77e-05 AACCGGGACG TGGCCTAG CGTTCCGCGA chrIII:4196745-4196825 9 3.77e-05 GGATCCAA TGGCCTAG CTTTACCCAG chrIII:7198998-7199078 19 3.77e-05 ATTGAACCAT TGGCCTAG AAAATTCAAA chrV:20424949-20425029 25 3.77e-05 TTCCCAATGG TGGCCTAG AAAACCCCGA chrX:4254992-4255072 35 3.77e-05 CACACAACGC TGGCCTAG AATTCTCCAT chrI:11609236-11609316 4 3.77e-05 CCG TGGCCTAG TGGCTAGTAA chrI:5118899-5118979 32 3.77e-05 AAAATCAAGA TGGCCTAG AATTTCAACT chrV:10031922-10032002 37 3.77e-05 CACGGCCGTG TGGCCTAG AAACTTCTTG chrI:9393794-9393874 27 3.77e-05 CACGACATGC TGGCCTAG AAACCTCTGC chrI:5659137-5659217 8 3.77e-05 GAAAATA TGGCCTAG AAATATTCGC chrX:7569827-7569907 19 3.77e-05 CACGGCCGCG TGGCCTAG TTTTTTCAAT chrI:636761-636841 44 3.77e-05 AACATGGCCG TGGCCTAG CGTTCCCCTC chrX:5205697-5205777 48 3.77e-05 CGAGCGGCCG TGGCCTAG CGTTTGCACT chrIV:13289510-13289590 23 3.77e-05 GTTTGAACGG TGGCCTAG AATCTGCACG chrX:13585002-13585082 24 4.87e-05 GCGCCACATA CGGCCGAG GTTTCACGCG chrX:3411770-3411850 7 4.87e-05 TGCGCG CGGCCGAG ATGGGGTTTC chrV:13409243-13409323 15 4.87e-05 GAGGAGTACA CGGCCGAG AATCACAAAA chrII:6097608-6097688 34 4.87e-05 GAGGAGTACA CGGCCGAG CATGCTCCGC chrI:8490934-8491014 35 7.44e-05 AGGCGGTTAA TGGCCGTG GCCTCGTATT chrIV:10197487-10197567 13 7.44e-05 CAACAGGAGG TGGCCGTG GCCGTGAATG chrII:476191-476271 33 7.44e-05 TTGCCGACGA TGGCCGTG TGGGGGTTTC chrX:11693254-11693334 33 7.44e-05 GCTGCACTTG TGGCCGTG GCCTAAGAAT chrX:7798499-7798579 24 7.44e-05 ATGGAGGGTG TGGCCGTG TAAGAGGGGG chrI:10161980-10162060 20 7.44e-05 TTTTCGCTAG TGGCCGTG GCCGAACGCG chrX:9917512-9917592 16 7.44e-05 TAAACTGCCA TGGCCTCG GGGGACGAGA chrI:4247554-4247634 53 9.80e-05 CTAGGCCACG CGGCCGCG TACTCCTCGA chrX:4853175-4853255 25 9.80e-05 GTCGTATCTT CGGCCGCG GCCACGACCA chrIV:8019907-8019987 34 9.80e-05 TCTCGTCCCT CGGCCGCG CTGAGATTTC chrII:10538106-10538186 45 1.60e-04 AATTATTTCT CGGCCGTG TACTCCTCTC chrII:15089579-15089659 40 1.60e-04 CTAGGCCACG CGGCCGTG TAGTCCTCCT chrIV:11315030-11315110 57 1.60e-04 GAATTTCGTG CGGCCGTG GCTGAGTTTT chrI:5106172-5106252 38 1.60e-04 TTGTATTTCT CGGCCGTG GCCGAACTTA chrIII:4999010-4999090 42 2.10e-04 GGAGAATCCT CGGCCACG GCCACCAGAA chrV:10320340-10320420 16 2.10e-04 AACTAGGCCA CGGCCACG CGTTCTCTCG chrIV:16995561-16995641 53 2.10e-04 TCCTCTTCCA CGGCCACG CGGCCCCCAC chrI:9080113-9080193 26 2.10e-04 TGATGTTTTT CGGCCACG GCCACCGCAA chrIII:13359965-13360045 28 2.10e-04 ACTAATTTCT CGGCCACG GCCGTCGGTT chrI:5281834-5281914 9 2.10e-04 GAATTTCT CGGCCACG GCCATCAGTT chrI:11222179-11222259 8 2.10e-04 TAGTCCA CGGCCACG CGGCCACCGA chrIII:11286250-11286330 28 2.10e-04 CGGAGCCCCG CGGCCACG GCCCCCACGC chrIV:4712595-4712675 37 2.10e-04 CTCGGCCACC CGGCCACG AAAACTCGGC chrII:7879485-7879565 66 2.36e-04 CCGGAGGCCA CGGCCATG GTTCTTT chrI:14756438-14756518 38 2.36e-04 ACCTCGGTCA CGGCCATG CCACTTTTTT chrV:2603191-2603271 23 2.36e-04 TCCTCGTCCA CGGCCATG CGAAATGCGC chrII:10714389-10714469 13 2.36e-04 TAATAATTAA TGGACGAG GTTTTGAAGA chrII:7537768-7537848 33 2.63e-04 ATATGGCCGC TGGACTAG TATTTGTACG chrIII:4343294-4343374 22 2.63e-04 ACACGGCCGA TGGACTAG GAACACACTG chrIII:8144741-8144821 16 3.17e-04 GTATTGGCTC TGTCCGAG AGGAGTACAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCKMG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:5108956-5109036 1.2e-05 34_[+1]_38 chrIII:11290686-11290766 1.2e-05 48_[+1]_24 chrIV:6887864-6887944 1.2e-05 21_[+1]_51 chrIII:3695521-3695601 1.2e-05 21_[+1]_51 chrII:9968473-9968553 1.2e-05 49_[+1]_23 chrII:14857067-14857147 1.2e-05 26_[+1]_46 chrIII:12673529-12673609 1.2e-05 36_[+1]_36 chrIII:10064309-10064389 1.2e-05 7_[+1]_65 chrI:6760278-6760358 1.2e-05 40_[+1]_32 chrX:3379231-3379311 1.2e-05 62_[+1]_10 chrII:1500580-1500660 1.2e-05 59_[+1]_13 chrIV:12653264-12653344 1.2e-05 23_[+1]_49 chrII:147660-147740 2.4e-05 2_[+1]_70 chrIII:5803102-5803182 2.4e-05 16_[+1]_56 chrX:2108331-2108411 2.4e-05 61_[+1]_11 chrII:6383329-6383409 2.4e-05 26_[+1]_46 chrII:3482362-3482442 2.4e-05 11_[+1]_61 chrI:13470399-13470479 2.4e-05 67_[+1]_5 chrIV:4042415-4042495 2.4e-05 29_[+1]_43 chrIII:1540275-1540355 2.4e-05 8_[+1]_64 chrX:915710-915790 2.4e-05 27_[+1]_45 chrV:16022756-16022836 2.4e-05 54_[+1]_18 chrI:13835187-13835267 2.4e-05 21_[+1]_51 chrIII:4912501-4912581 3.8e-05 33_[+1]_39 chrII:12022922-12023002 3.8e-05 12_[+1]_60 chrII:9319539-9319619 3.8e-05 36_[+1]_36 chrIV:7816567-7816647 3.8e-05 22_[+1]_50 chrIII:8529060-8529140 3.8e-05 31_[+1]_41 chrV:11644298-11644378 3.8e-05 44_[+1]_28 chrV:7084875-7084955 3.8e-05 38_[+1]_34 chrII:2752703-2752783 3.8e-05 47_[+1]_25 chrV:6107633-6107713 3.8e-05 36_[+1]_36 chrIII:4196745-4196825 3.8e-05 8_[+1]_64 chrIII:7198998-7199078 3.8e-05 18_[+1]_54 chrV:20424949-20425029 3.8e-05 24_[+1]_48 chrX:4254992-4255072 3.8e-05 34_[+1]_38 chrI:11609236-11609316 3.8e-05 3_[+1]_69 chrI:5118899-5118979 3.8e-05 31_[+1]_41 chrV:10031922-10032002 3.8e-05 36_[+1]_36 chrI:9393794-9393874 3.8e-05 26_[+1]_46 chrI:5659137-5659217 3.8e-05 7_[+1]_65 chrX:7569827-7569907 3.8e-05 18_[+1]_54 chrI:636761-636841 3.8e-05 43_[+1]_29 chrX:5205697-5205777 3.8e-05 47_[+1]_25 chrIV:13289510-13289590 3.8e-05 22_[+1]_50 chrX:13585002-13585082 4.9e-05 23_[+1]_49 chrX:3411770-3411850 4.9e-05 6_[+1]_66 chrV:13409243-13409323 4.9e-05 14_[+1]_58 chrII:6097608-6097688 4.9e-05 33_[+1]_39 chrI:8490934-8491014 7.4e-05 34_[+1]_38 chrIV:10197487-10197567 7.4e-05 12_[+1]_60 chrII:476191-476271 7.4e-05 32_[+1]_40 chrX:11693254-11693334 7.4e-05 32_[+1]_40 chrX:7798499-7798579 7.4e-05 23_[+1]_49 chrI:10161980-10162060 7.4e-05 19_[+1]_53 chrX:9917512-9917592 7.4e-05 15_[+1]_57 chrI:4247554-4247634 9.8e-05 52_[+1]_20 chrX:4853175-4853255 9.8e-05 24_[+1]_48 chrIV:8019907-8019987 9.8e-05 33_[+1]_39 chrII:10538106-10538186 0.00016 44_[+1]_28 chrII:15089579-15089659 0.00016 39_[+1]_33 chrIV:11315030-11315110 0.00016 56_[+1]_16 chrI:5106172-5106252 0.00016 37_[+1]_35 chrIII:4999010-4999090 0.00021 41_[+1]_31 chrV:10320340-10320420 0.00021 15_[+1]_57 chrIV:16995561-16995641 0.00021 52_[+1]_20 chrI:9080113-9080193 0.00021 25_[+1]_47 chrIII:13359965-13360045 0.00021 27_[+1]_45 chrI:5281834-5281914 0.00021 8_[+1]_64 chrI:11222179-11222259 0.00021 7_[+1]_65 chrIII:11286250-11286330 0.00021 27_[+1]_45 chrIV:4712595-4712675 0.00021 36_[+1]_36 chrII:7879485-7879565 0.00024 65_[+1]_7 chrI:14756438-14756518 0.00024 37_[+1]_35 chrV:2603191-2603271 0.00024 22_[+1]_50 chrII:10714389-10714469 0.00024 12_[+1]_60 chrII:7537768-7537848 0.00026 32_[+1]_40 chrIII:4343294-4343374 0.00026 21_[+1]_51 chrIII:8144741-8144821 0.00032 15_[+1]_57 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCKMG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCCKMG width=8 seqs=79 chrIII:5108956-5109036 ( 35) TGGCCGAG 1 chrIII:11290686-11290766 ( 49) TGGCCGAG 1 chrIV:6887864-6887944 ( 22) TGGCCGAG 1 chrIII:3695521-3695601 ( 22) TGGCCGAG 1 chrII:9968473-9968553 ( 50) TGGCCGAG 1 chrII:14857067-14857147 ( 27) TGGCCGAG 1 chrIII:12673529-12673609 ( 37) TGGCCGAG 1 chrIII:10064309-10064389 ( 8) TGGCCGAG 1 chrI:6760278-6760358 ( 41) TGGCCGAG 1 chrX:3379231-3379311 ( 63) TGGCCGAG 1 chrII:1500580-1500660 ( 60) TGGCCGAG 1 chrIV:12653264-12653344 ( 24) TGGCCGAG 1 chrII:147660-147740 ( 3) TGGCCGCG 1 chrIII:5803102-5803182 ( 17) TGGCCGCG 1 chrX:2108331-2108411 ( 62) TGGCCGCG 1 chrII:6383329-6383409 ( 27) TGGCCGCG 1 chrII:3482362-3482442 ( 12) TGGCCGCG 1 chrI:13470399-13470479 ( 68) TGGCCGCG 1 chrIV:4042415-4042495 ( 30) TGGCCGCG 1 chrIII:1540275-1540355 ( 9) TGGCCGCG 1 chrX:915710-915790 ( 28) TGGCCGCG 1 chrV:16022756-16022836 ( 55) TGGCCGCG 1 chrI:13835187-13835267 ( 22) TGGCCGCG 1 chrIII:4912501-4912581 ( 34) TGGCCTAG 1 chrII:12022922-12023002 ( 13) TGGCCTAG 1 chrII:9319539-9319619 ( 37) TGGCCTAG 1 chrIV:7816567-7816647 ( 23) TGGCCTAG 1 chrIII:8529060-8529140 ( 32) TGGCCTAG 1 chrV:11644298-11644378 ( 45) TGGCCTAG 1 chrV:7084875-7084955 ( 39) TGGCCTAG 1 chrII:2752703-2752783 ( 48) TGGCCTAG 1 chrV:6107633-6107713 ( 37) TGGCCTAG 1 chrIII:4196745-4196825 ( 9) TGGCCTAG 1 chrIII:7198998-7199078 ( 19) TGGCCTAG 1 chrV:20424949-20425029 ( 25) TGGCCTAG 1 chrX:4254992-4255072 ( 35) TGGCCTAG 1 chrI:11609236-11609316 ( 4) TGGCCTAG 1 chrI:5118899-5118979 ( 32) TGGCCTAG 1 chrV:10031922-10032002 ( 37) TGGCCTAG 1 chrI:9393794-9393874 ( 27) TGGCCTAG 1 chrI:5659137-5659217 ( 8) TGGCCTAG 1 chrX:7569827-7569907 ( 19) TGGCCTAG 1 chrI:636761-636841 ( 44) TGGCCTAG 1 chrX:5205697-5205777 ( 48) TGGCCTAG 1 chrIV:13289510-13289590 ( 23) TGGCCTAG 1 chrX:13585002-13585082 ( 24) CGGCCGAG 1 chrX:3411770-3411850 ( 7) CGGCCGAG 1 chrV:13409243-13409323 ( 15) CGGCCGAG 1 chrII:6097608-6097688 ( 34) CGGCCGAG 1 chrI:8490934-8491014 ( 35) TGGCCGTG 1 chrIV:10197487-10197567 ( 13) TGGCCGTG 1 chrII:476191-476271 ( 33) TGGCCGTG 1 chrX:11693254-11693334 ( 33) TGGCCGTG 1 chrX:7798499-7798579 ( 24) TGGCCGTG 1 chrI:10161980-10162060 ( 20) TGGCCGTG 1 chrX:9917512-9917592 ( 16) TGGCCTCG 1 chrI:4247554-4247634 ( 53) CGGCCGCG 1 chrX:4853175-4853255 ( 25) CGGCCGCG 1 chrIV:8019907-8019987 ( 34) CGGCCGCG 1 chrII:10538106-10538186 ( 45) CGGCCGTG 1 chrII:15089579-15089659 ( 40) CGGCCGTG 1 chrIV:11315030-11315110 ( 57) CGGCCGTG 1 chrI:5106172-5106252 ( 38) CGGCCGTG 1 chrIII:4999010-4999090 ( 42) CGGCCACG 1 chrV:10320340-10320420 ( 16) CGGCCACG 1 chrIV:16995561-16995641 ( 53) CGGCCACG 1 chrI:9080113-9080193 ( 26) CGGCCACG 1 chrIII:13359965-13360045 ( 28) CGGCCACG 1 chrI:5281834-5281914 ( 9) CGGCCACG 1 chrI:11222179-11222259 ( 8) CGGCCACG 1 chrIII:11286250-11286330 ( 28) CGGCCACG 1 chrIV:4712595-4712675 ( 37) CGGCCACG 1 chrII:7879485-7879565 ( 66) CGGCCATG 1 chrI:14756438-14756518 ( 38) CGGCCATG 1 chrV:2603191-2603271 ( 23) CGGCCATG 1 chrII:10714389-10714469 ( 13) TGGACGAG 1 chrII:7537768-7537848 ( 33) TGGACTAG 1 chrIII:4343294-4343374 ( 22) TGGACTAG 1 chrIII:8144741-8144821 ( 16) TGTCCGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCKMG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.78077 E= 2.7e-058 -1295 29 -1295 141 -1295 -1295 208 -1295 -1295 -1295 206 -440 -276 202 -1295 -1295 -1295 207 -1295 -1295 -76 -1295 117 24 104 35 -1295 -70 -1295 -1295 208 -1295 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCKMG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 79 E= 2.7e-058 0.000000 0.291139 0.000000 0.708861 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.987342 0.012658 0.037975 0.962025 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.151899 0.000000 0.531646 0.316456 0.531646 0.303797 0.000000 0.164557 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCKMG MEME-1 regular expression -------------------------------------------------------------------------------- [TC]GGCC[GT][AC]G -------------------------------------------------------------------------------- Time 7.39 secs. ******************************************************************************** ******************************************************************************** MOTIF CTMGGCCA MEME-2 width = 8 sites = 53 llr = 480 E-value = 3.0e-037 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :24::::8 pos.-specific C a:6::9a: probability G :::aa::2 matrix T :8:::1:: bits 2.1 * ** * 1.9 * ** * 1.7 * ** * 1.5 * **** Relative 1.2 * ***** Entropy 1.0 ******** (13.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCGGCCA consensus AA G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:5108956-5109036 69 1.25e-05 TTTTTCTCTT CTCGGCCA GTTT chrIII:8529060-8529140 52 1.25e-05 TTCTCTTTTA CTCGGCCA TGGCATACAT chrII:14857067-14857147 70 1.25e-05 TCGCACACTT CTCGGCCA ttt chrI:15013993-15014073 13 1.25e-05 ATTTCGCGCG CTCGGCCA GAGGACGAGT chrV:10320340-10320420 30 1.25e-05 CACGCGTTCT CTCGGCCA TGTACTCCTC chrV:20424949-20425029 64 1.25e-05 CTCCATTGCA CTCGGCCA CCACTATTT chrIII:7088069-7088149 43 1.25e-05 AGGCGAATTT CTCGGCCA CCGCCTGGGG chrIV:8019907-8019987 51 1.25e-05 GCTGAGATTT CTCGGCCA CAGTATCGCA chrII:6097608-6097688 66 1.25e-05 GAGGGCATTC CTCGGCCA TATTACG chrIII:12673529-12673609 52 1.25e-05 GAGACCCCGA CTCGGCCA GGCAAGtttt chrV:12649806-12649886 17 1.25e-05 ACAATAAACA CTCGGCCA CCTCGCTCTA chrI:6051193-6051273 29 1.25e-05 CCTTGGACCG CTCGGCCA TCTCTCCGAC chrIV:4712595-4712675 49 1.25e-05 GCCACGAAAA CTCGGCCA TTTTGCATTT chrIII:8850806-8850886 50 2.60e-05 CGTGGAAATT CTAGGCCA CGGATAACTA chrI:1034353-1034433 38 2.60e-05 GCGCGGGTTT CTAGGCCA CGGCCACCGA chrI:4247554-4247634 43 2.60e-05 TAGTTACTTC CTAGGCCA CGCGGCCGCG chrX:13585002-13585082 48 2.60e-05 CGCGCACCTG CTAGGCCA CGTTTTGTTT chrII:2752703-2752783 66 2.60e-05 CAGTGGAAAC CTAGGCCA CTGAAGG chrIII:8144741-8144821 67 2.60e-05 GTTCTCAAAT CTAGGCCA TCTCAG chrII:15089579-15089659 30 2.60e-05 CATTTGGTTC CTAGGCCA CGCGGCCGTG chrI:5118899-5118979 71 2.60e-05 CATCAGAAAA CTAGGCCA TT chrI:3636643-3636723 29 2.60e-05 GATGGGAAAC CTAGGCCA CGGCCATCGA chrI:8511412-8511492 45 2.60e-05 ACGGAGAAAG CTAGGCCA TAAGTGGGAT chrI:5659137-5659217 36 2.60e-05 TTGTCGGTTC CTAGGCCA CCACCTCGTT chrIV:9777708-9777788 22 2.60e-05 ATGGAGTTTT CTAGGCCA CATGAACACA chrX:9917512-9917592 45 2.60e-05 TGAGAGACAA CTAGGCCA CGGCCACAGG chrIV:12653264-12653344 52 2.60e-05 ACGCCAGATC CTAGGCCA CTCGATATTT chrIII:4862059-4862139 10 2.60e-05 TATTCATTT CTAGGCCA CTGAAACAAA chrV:156204-156284 45 2.60e-05 TTAAAGTTTC CTAGGCCA CGCGACCGTG chrIII:4912501-4912581 26 3.74e-05 CATTCGGATT CTCGGCCG TGGCCTAGAA chrII:9319539-9319619 66 3.74e-05 CAAGTTCATT CTCGGCCG CACCGGT chrV:7084875-7084955 55 3.74e-05 AGAAACCAAC CTCGGCCG CACTGCGCCG chrIII:7198998-7199078 47 4.94e-05 TGTGCGCGGC CACGGCCA CTGTTGGCGG chrI:3176568-3176648 39 4.94e-05 AAAGTTAGGC CACGGCCA CCACGGCCCC chrI:9955958-9956038 57 4.94e-05 AGACCTAGTC CACGGCCA TCCGGCCATC chrV:15082457-15082537 46 6.18e-05 TTGTCGGATT CTAGGCCG CATGCGCAGA chrX:3411770-3411850 25 6.18e-05 ATGGGGTTTC CTAGGCCG CAAAGATTGA chrI:13835187-13835267 42 7.48e-05 CGCCATTTTC CAAGGCCA CCGGGGCTTA chrIII:5803102-5803182 38 8.58e-05 GCCTAGTTTT CACGGCCG AGAAATGTCA chrI:13470399-13470479 40 8.58e-05 GAGAGGACTA CACGGCCG GTGGCCTTGG chrV:10031922-10032002 27 8.58e-05 GAGTGGAGTA CACGGCCG TGTGGCCTAG chrX:7569827-7569907 9 8.58e-05 GAGTACTT CACGGCCG CGTGGCCTAG chrI:636761-636841 68 8.58e-05 CCTCCTAGTC CACGGCCG CGCAC chrIII:4343294-4343374 13 8.58e-05 ACGAGGAGTA CACGGCCG ATGGACTAGG chrII:5819828-5819908 25 8.58e-05 TCGTGTTGTT CACGGCCG AAGTTTTTCA chrIV:13289510-13289590 37 8.58e-05 CTAGAATCTG CACGGCCG CGCGCGCGTG chrX:10990758-10990838 53 9.99e-05 CAGTGCATTG CTCGGTCA GGTACCTTCT chrI:14756438-14756518 30 9.99e-05 CAGGTGAAAC CTCGGTCA CGGCCATGCC chrX:7798499-7798579 45 9.99e-05 GAGGGGGAAA CTCGGTCA TGTCGCCCGT chrIII:13187906-13187986 52 1.27e-04 TTGTCGGTTT CTAGGTCA CCACCCGTGT chrI:1675882-1675962 52 1.27e-04 TTTTCAGATT CTAGGTCA GCATTTGAAA chrIV:3803414-3803494 68 1.41e-04 GTGTACTCCT CTCGGACA AGGGA chrIII:10064309-10064389 50 1.41e-04 GTGTACTCCA CTCGGACA ACATTTTCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:5108956-5109036 1.2e-05 68_[+2]_4 chrIII:8529060-8529140 1.2e-05 51_[+2]_21 chrII:14857067-14857147 1.2e-05 69_[+2]_3 chrI:15013993-15014073 1.2e-05 12_[+2]_60 chrV:10320340-10320420 1.2e-05 29_[+2]_43 chrV:20424949-20425029 1.2e-05 63_[+2]_9 chrIII:7088069-7088149 1.2e-05 42_[+2]_30 chrIV:8019907-8019987 1.2e-05 50_[+2]_22 chrII:6097608-6097688 1.2e-05 65_[+2]_7 chrIII:12673529-12673609 1.2e-05 51_[+2]_21 chrV:12649806-12649886 1.2e-05 16_[+2]_56 chrI:6051193-6051273 1.2e-05 28_[+2]_44 chrIV:4712595-4712675 1.2e-05 48_[+2]_24 chrIII:8850806-8850886 2.6e-05 49_[+2]_23 chrI:1034353-1034433 2.6e-05 37_[+2]_35 chrI:4247554-4247634 2.6e-05 42_[+2]_30 chrX:13585002-13585082 2.6e-05 47_[+2]_25 chrII:2752703-2752783 2.6e-05 65_[+2]_7 chrIII:8144741-8144821 2.6e-05 66_[+2]_6 chrII:15089579-15089659 2.6e-05 29_[+2]_43 chrI:5118899-5118979 2.6e-05 70_[+2]_2 chrI:3636643-3636723 2.6e-05 28_[+2]_44 chrI:8511412-8511492 2.6e-05 44_[+2]_28 chrI:5659137-5659217 2.6e-05 35_[+2]_37 chrIV:9777708-9777788 2.6e-05 21_[+2]_51 chrX:9917512-9917592 2.6e-05 44_[+2]_28 chrIV:12653264-12653344 2.6e-05 51_[+2]_21 chrIII:4862059-4862139 2.6e-05 9_[+2]_63 chrV:156204-156284 2.6e-05 44_[+2]_28 chrIII:4912501-4912581 3.7e-05 25_[+2]_47 chrII:9319539-9319619 3.7e-05 65_[+2]_7 chrV:7084875-7084955 3.7e-05 54_[+2]_18 chrIII:7198998-7199078 4.9e-05 46_[+2]_26 chrI:3176568-3176648 4.9e-05 38_[+2]_34 chrI:9955958-9956038 4.9e-05 56_[+2]_16 chrV:15082457-15082537 6.2e-05 45_[+2]_27 chrX:3411770-3411850 6.2e-05 24_[+2]_48 chrI:13835187-13835267 7.5e-05 41_[+2]_31 chrIII:5803102-5803182 8.6e-05 37_[+2]_35 chrI:13470399-13470479 8.6e-05 39_[+2]_33 chrV:10031922-10032002 8.6e-05 26_[+2]_46 chrX:7569827-7569907 8.6e-05 8_[+2]_64 chrI:636761-636841 8.6e-05 67_[+2]_5 chrIII:4343294-4343374 8.6e-05 12_[+2]_60 chrII:5819828-5819908 8.6e-05 24_[+2]_48 chrIV:13289510-13289590 8.6e-05 36_[+2]_36 chrX:10990758-10990838 0.0001 52_[+2]_20 chrI:14756438-14756518 0.0001 29_[+2]_43 chrX:7798499-7798579 0.0001 44_[+2]_28 chrIII:13187906-13187986 0.00013 51_[+2]_21 chrI:1675882-1675962 0.00013 51_[+2]_21 chrIV:3803414-3803494 0.00014 67_[+2]_5 chrIII:10064309-10064389 0.00014 49_[+2]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTMGGCCA width=8 seqs=53 chrIII:5108956-5109036 ( 69) CTCGGCCA 1 chrIII:8529060-8529140 ( 52) CTCGGCCA 1 chrII:14857067-14857147 ( 70) CTCGGCCA 1 chrI:15013993-15014073 ( 13) CTCGGCCA 1 chrV:10320340-10320420 ( 30) CTCGGCCA 1 chrV:20424949-20425029 ( 64) CTCGGCCA 1 chrIII:7088069-7088149 ( 43) CTCGGCCA 1 chrIV:8019907-8019987 ( 51) CTCGGCCA 1 chrII:6097608-6097688 ( 66) CTCGGCCA 1 chrIII:12673529-12673609 ( 52) CTCGGCCA 1 chrV:12649806-12649886 ( 17) CTCGGCCA 1 chrI:6051193-6051273 ( 29) CTCGGCCA 1 chrIV:4712595-4712675 ( 49) CTCGGCCA 1 chrIII:8850806-8850886 ( 50) CTAGGCCA 1 chrI:1034353-1034433 ( 38) CTAGGCCA 1 chrI:4247554-4247634 ( 43) CTAGGCCA 1 chrX:13585002-13585082 ( 48) CTAGGCCA 1 chrII:2752703-2752783 ( 66) CTAGGCCA 1 chrIII:8144741-8144821 ( 67) CTAGGCCA 1 chrII:15089579-15089659 ( 30) CTAGGCCA 1 chrI:5118899-5118979 ( 71) CTAGGCCA 1 chrI:3636643-3636723 ( 29) CTAGGCCA 1 chrI:8511412-8511492 ( 45) CTAGGCCA 1 chrI:5659137-5659217 ( 36) CTAGGCCA 1 chrIV:9777708-9777788 ( 22) CTAGGCCA 1 chrX:9917512-9917592 ( 45) CTAGGCCA 1 chrIV:12653264-12653344 ( 52) CTAGGCCA 1 chrIII:4862059-4862139 ( 10) CTAGGCCA 1 chrV:156204-156284 ( 45) CTAGGCCA 1 chrIII:4912501-4912581 ( 26) CTCGGCCG 1 chrII:9319539-9319619 ( 66) CTCGGCCG 1 chrV:7084875-7084955 ( 55) CTCGGCCG 1 chrIII:7198998-7199078 ( 47) CACGGCCA 1 chrI:3176568-3176648 ( 39) CACGGCCA 1 chrI:9955958-9956038 ( 57) CACGGCCA 1 chrV:15082457-15082537 ( 46) CTAGGCCG 1 chrX:3411770-3411850 ( 25) CTAGGCCG 1 chrI:13835187-13835267 ( 42) CAAGGCCA 1 chrIII:5803102-5803182 ( 38) CACGGCCG 1 chrI:13470399-13470479 ( 40) CACGGCCG 1 chrV:10031922-10032002 ( 27) CACGGCCG 1 chrX:7569827-7569907 ( 9) CACGGCCG 1 chrI:636761-636841 ( 68) CACGGCCG 1 chrIII:4343294-4343374 ( 13) CACGGCCG 1 chrII:5819828-5819908 ( 25) CACGGCCG 1 chrIV:13289510-13289590 ( 37) CACGGCCG 1 chrX:10990758-10990838 ( 53) CTCGGTCA 1 chrI:14756438-14756518 ( 30) CTCGGTCA 1 chrX:7798499-7798579 ( 45) CTCGGTCA 1 chrIII:13187906-13187986 ( 52) CTAGGTCA 1 chrI:1675882-1675962 ( 52) CTAGGTCA 1 chrIV:3803414-3803494 ( 68) CTCGGACA 1 chrIII:10064309-10064389 ( 50) CTCGGACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0668 E= 3.0e-037 -1237 207 -1237 -1237 -19 -1237 -1237 153 62 134 -1237 -1237 -1237 -1237 208 -1237 -1237 -1237 208 -1237 -277 187 -1237 -150 -1237 207 -1237 -1237 155 -1237 5 -1237 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 53 E= 3.0e-037 0.000000 1.000000 0.000000 0.000000 0.226415 0.000000 0.000000 0.773585 0.396226 0.603774 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.037736 0.867925 0.000000 0.094340 0.000000 1.000000 0.000000 0.000000 0.754717 0.000000 0.245283 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTMGGCCA MEME-2 regular expression -------------------------------------------------------------------------------- C[TA][CA]GGCC[AG] -------------------------------------------------------------------------------- Time 11.05 secs. ******************************************************************************** ******************************************************************************** MOTIF AGACGCAG MEME-3 width = 8 sites = 16 llr = 158 E-value = 5.6e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGACGCAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A a:a:1:9: pos.-specific C :::a:9:: probability G :a::81:a matrix T ::::1:1: bits 2.1 * * * 1.9 **** * 1.7 **** * * 1.5 **** *** Relative 1.2 **** *** Entropy 1.0 ******** (14.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGACGCAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:5649576-5649656 25 1.29e-05 ACGAAACGAG AGACGCAG AGAAAACCGA chrX:5480237-5480317 55 1.29e-05 AAGGCGAAGA AGACGCAG TGGGAGGAAT chrI:1261643-1261723 50 1.29e-05 ATCAGAGGAG AGACGCAG ACAATCTGAT chrIII:13698019-13698099 8 1.29e-05 ACGAAAG AGACGCAG AGTAAAAGAT chrII:9491156-9491236 64 1.29e-05 aatggtaatg agACGCAG AGATTACTG chrIII:711184-711264 63 1.29e-05 CCTCAAGAGG AGACGCAG ACGTGCTTAT chrX:4853175-4853255 69 1.29e-05 GCGATGGAAG AGACGCAG ATGG chrIV:10817177-10817257 18 1.29e-05 AGATCACACG AGACGCAG AGCGCGTACT chrIII:12178265-12178345 10 1.29e-05 AAATTGAGA AGACGCAG ACATACCGAC chrIII:8850806-8850886 8 5.51e-05 CGCAAAG AGACACAG AGATAGATGC chrIII:3476301-3476381 20 5.51e-05 GTTATTTGGG AGACGCTG ATTCGCGAAA chrX:1103882-1103962 69 5.51e-05 TCACTTCAAG AGACTCAG AGGT chrIII:6537333-6537413 42 5.51e-05 ATCGATGCAG AGACGCTG CCCGCTTGGA chrII:14142209-14142289 36 5.51e-05 GTCAGAATGC AGACTCAG TGCAAATAGG chrII:8748142-8748222 5 5.51e-05 TACG AGACACAG ATGTCCTCAA chrIV:10197487-10197567 67 6.80e-05 GGCAAAGAAG AGACGGAG AATATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:5649576-5649656 1.3e-05 24_[+3]_48 chrX:5480237-5480317 1.3e-05 54_[+3]_18 chrI:1261643-1261723 1.3e-05 49_[+3]_23 chrIII:13698019-13698099 1.3e-05 7_[+3]_65 chrII:9491156-9491236 1.3e-05 63_[+3]_9 chrIII:711184-711264 1.3e-05 62_[+3]_10 chrX:4853175-4853255 1.3e-05 68_[+3]_4 chrIV:10817177-10817257 1.3e-05 17_[+3]_55 chrIII:12178265-12178345 1.3e-05 9_[+3]_63 chrIII:8850806-8850886 5.5e-05 7_[+3]_65 chrIII:3476301-3476381 5.5e-05 19_[+3]_53 chrX:1103882-1103962 5.5e-05 68_[+3]_4 chrIII:6537333-6537413 5.5e-05 41_[+3]_31 chrII:14142209-14142289 5.5e-05 35_[+3]_37 chrII:8748142-8748222 5.5e-05 4_[+3]_68 chrIV:10197487-10197567 6.8e-05 66_[+3]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGACGCAG width=8 seqs=16 chrII:5649576-5649656 ( 25) AGACGCAG 1 chrX:5480237-5480317 ( 55) AGACGCAG 1 chrI:1261643-1261723 ( 50) AGACGCAG 1 chrIII:13698019-13698099 ( 8) AGACGCAG 1 chrII:9491156-9491236 ( 64) AGACGCAG 1 chrIII:711184-711264 ( 63) AGACGCAG 1 chrX:4853175-4853255 ( 69) AGACGCAG 1 chrIV:10817177-10817257 ( 18) AGACGCAG 1 chrIII:12178265-12178345 ( 10) AGACGCAG 1 chrIII:8850806-8850886 ( 8) AGACACAG 1 chrIII:3476301-3476381 ( 20) AGACGCTG 1 chrX:1103882-1103962 ( 69) AGACTCAG 1 chrIII:6537333-6537413 ( 42) AGACGCTG 1 chrII:14142209-14142289 ( 36) AGACTCAG 1 chrII:8748142-8748222 ( 5) AGACACAG 1 chrIV:10197487-10197567 ( 67) AGACGGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8918 E= 5.6e-001 195 -1064 -1064 -1064 -1064 -1064 208 -1064 195 -1064 -1064 -1064 -1064 207 -1064 -1064 -104 -1064 166 -110 -1064 198 -192 -1064 176 -1064 -1064 -110 -1064 -1064 208 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 5.6e-001 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.125000 0.000000 0.750000 0.125000 0.000000 0.937500 0.062500 0.000000 0.875000 0.000000 0.000000 0.125000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-3 regular expression -------------------------------------------------------------------------------- AGACGCAG -------------------------------------------------------------------------------- Time 14.55 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGGASTA MEME-4 width = 8 sites = 20 llr = 192 E-value = 4.3e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGGASTA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :7::a1:a pos.-specific C :::::4:: probability G a:aa:6:: matrix T :3::::a: bits 2.1 * ** 1.9 * *** ** 1.7 * *** ** 1.5 * *** ** Relative 1.2 * *** ** Entropy 1.0 ***** ** (13.8 bits) 0.8 ***** ** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGGAGTA consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGASTA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:15082457-15082537 23 1.45e-05 AATTGTCTAG GAGGAGTA CACGGTTGTC chrIII:11290686-11290766 32 1.45e-05 CCTTGTCCGA GAGGAGTA CACACCGGGT chrIII:4912501-4912581 3 1.45e-05 GA GAGGAGTA CACGACATTC chrII:10538106-10538186 17 1.45e-05 CATTATCCGA GAGGAGTA CATGGCCGAT chrV:13409243-13409323 5 1.45e-05 CCGA GAGGAGTA CACGGCCGAG chrII:6097608-6097688 24 1.45e-05 AGTTTCCCTG GAGGAGTA CACGGCCGAG chrIII:12673529-12673609 19 1.45e-05 GTTTGTCCTA GAGGAGTA CACGGCGTGG chrIII:4343294-4343374 5 1.45e-05 TCAC GAGGAGTA CACGGCCGAT chrIII:8700729-8700809 5 2.91e-05 GCAC GAGGACTA ACTTCGCTGG chrI:13470399-13470479 32 2.91e-05 AGTTATCCGA GAGGACTA CACGGCCGGT chrIV:11315030-11315110 23 2.91e-05 AATTGTTCAC GAGGACTA CACGCAACAT chrX:2488587-2488667 5 2.91e-05 AAAT GAGGACTA ACTGCTTGGC chrIV:7816567-7816647 5 4.42e-05 CCGA GTGGAGTA CACCACCGTG chrV:10031922-10032002 19 4.42e-05 AATTGTCCGA GTGGAGTA CACGGCCGTG chrX:3379231-3379311 28 4.42e-05 ATCACTCCGA GTGGAGTA CGTGCGCGAT chrI:9393794-9393874 9 5.93e-05 TAGTCCGC GTGGACTA CACGACATGC chrI:10161980-10162060 72 5.93e-05 TGTACTCCTC GTGGACTA A chrI:6760278-6760358 24 5.93e-05 AAGGCACCTC GTGGACTA GTTTCCACAT chrX:5480237-5480317 66 7.51e-05 GACGCAGTGG GAGGAATA GAAGGCA chrI:9955958-9956038 8 7.51e-05 AGATTGA GAGGAATA ATGAGACCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGASTA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:15082457-15082537 1.5e-05 22_[+4]_50 chrIII:11290686-11290766 1.5e-05 31_[+4]_41 chrIII:4912501-4912581 1.5e-05 2_[+4]_70 chrII:10538106-10538186 1.5e-05 16_[+4]_56 chrV:13409243-13409323 1.5e-05 4_[+4]_68 chrII:6097608-6097688 1.5e-05 23_[+4]_49 chrIII:12673529-12673609 1.5e-05 18_[+4]_54 chrIII:4343294-4343374 1.5e-05 4_[+4]_68 chrIII:8700729-8700809 2.9e-05 4_[+4]_68 chrI:13470399-13470479 2.9e-05 31_[+4]_41 chrIV:11315030-11315110 2.9e-05 22_[+4]_50 chrX:2488587-2488667 2.9e-05 4_[+4]_68 chrIV:7816567-7816647 4.4e-05 4_[+4]_68 chrV:10031922-10032002 4.4e-05 18_[+4]_54 chrX:3379231-3379311 4.4e-05 27_[+4]_45 chrI:9393794-9393874 5.9e-05 8_[+4]_64 chrI:10161980-10162060 5.9e-05 71_[+4]_1 chrI:6760278-6760358 5.9e-05 23_[+4]_49 chrX:5480237-5480317 7.5e-05 65_[+4]_7 chrI:9955958-9956038 7.5e-05 7_[+4]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGASTA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGGASTA width=8 seqs=20 chrV:15082457-15082537 ( 23) GAGGAGTA 1 chrIII:11290686-11290766 ( 32) GAGGAGTA 1 chrIII:4912501-4912581 ( 3) GAGGAGTA 1 chrII:10538106-10538186 ( 17) GAGGAGTA 1 chrV:13409243-13409323 ( 5) GAGGAGTA 1 chrII:6097608-6097688 ( 24) GAGGAGTA 1 chrIII:12673529-12673609 ( 19) GAGGAGTA 1 chrIII:4343294-4343374 ( 5) GAGGAGTA 1 chrIII:8700729-8700809 ( 5) GAGGACTA 1 chrI:13470399-13470479 ( 32) GAGGACTA 1 chrIV:11315030-11315110 ( 23) GAGGACTA 1 chrX:2488587-2488667 ( 5) GAGGACTA 1 chrIV:7816567-7816647 ( 5) GTGGAGTA 1 chrV:10031922-10032002 ( 19) GTGGAGTA 1 chrX:3379231-3379311 ( 28) GTGGAGTA 1 chrI:9393794-9393874 ( 9) GTGGACTA 1 chrI:10161980-10162060 ( 72) GTGGACTA 1 chrI:6760278-6760358 ( 24) GTGGACTA 1 chrX:5480237-5480317 ( 66) GAGGAATA 1 chrI:9955958-9956038 ( 8) GAGGAATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGASTA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.7763 E= 4.3e-003 -1097 -1097 208 -1097 144 -1097 -1097 17 -1097 -1097 208 -1097 -1097 -1097 208 -1097 195 -1097 -1097 -1097 -137 56 122 -1097 -1097 -1097 -1097 190 195 -1097 -1097 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGASTA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 4.3e-003 0.000000 0.000000 1.000000 0.000000 0.700000 0.000000 0.000000 0.300000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.100000 0.350000 0.550000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGGASTA MEME-4 regular expression -------------------------------------------------------------------------------- G[AT]GGA[GC]TA -------------------------------------------------------------------------------- Time 18.01 secs. ******************************************************************************** ******************************************************************************** MOTIF GSCCCCAC MEME-5 width = 8 sites = 21 llr = 193 E-value = 3.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSCCCCAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::2::8: pos.-specific C :6a7aa:a probability G a4::::2: matrix T :::1:::: bits 2.1 * ** * 1.9 * * ** * 1.7 * * ** * 1.5 * * ** * Relative 1.2 * * **** Entropy 1.0 *** **** (13.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCCCCCAC consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCCCCAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:11664964-11665044 42 1.11e-05 CCCGTCGAGA GCCCCCAC CACTACCACC chrIII:13698019-13698099 29 1.11e-05 AAAAGATACG GCCCCCAC TCCCTCCCCC chrIV:16995561-16995641 63 1.11e-05 CGGCCACGCG GCCCCCAC CTTCTAATCG chrIII:11286250-11286330 36 1.11e-05 CGCGGCCACG GCCCCCAC GCCTTTTTGC chrIII:3499994-3500074 46 2.22e-05 AAATTCGAGA GGCCCCAC GGAAAGAGGA chrI:3176568-3176648 51 2.22e-05 CGGCCACCAC GGCCCCAC GAAAATGGAA chrV:14443602-14443682 51 2.22e-05 TCTCGACAGA GGCCCCAC GAAAAGGGGA chrI:4958824-4958904 26 2.22e-05 TCACGTTTGA GGCCCCAC GAAAAGGGGA chrIII:11848480-11848560 18 2.22e-05 TCGGTACGGA GGCCCCAC AGAAAGGAGG chrI:12899121-12899201 14 2.22e-05 AAAAAAAAGA GGCCCCAC GAAAAGGGGA chrIII:4196745-4196825 27 3.42e-05 CTTTACCCAG GCCACCAC ATTCCTCTGT chrX:1853740-1853820 31 3.42e-05 GAGATCTTAG GCCACCAC ATGTGTGAAT chrII:7810965-7811045 10 3.42e-05 GATGACCGG GCCACCAC CTCAGTACCC chrIII:10248650-10248730 21 4.44e-05 GAGGCACGGA GCCCCCGC AGAAAACAAA chrV:2603191-2603271 2 4.44e-05 G GCCCCCGC ACTTCCTCGT chrIV:13487156-13487236 7 5.64e-05 TTCTGA GGCACCAC GTTTTCAACA chrI:7935795-7935875 69 6.66e-05 TCGGGGGATT GGCCCCGC CCAC chrIII:3695521-3695601 73 7.91e-05 AGGCCACACG GCCTCCAC chrI:2487865-2487945 50 9.16e-05 ATAAGACCGA GGCTCCAC GAAATTCAAG chrI:9080113-9080193 34 1.03e-04 TTCGGCCACG GCCACCGC AATTGTCGGC chrV:155398-155478 38 1.25e-04 GAAAAAGAGA CCCCCCAC GTGTGCGGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCCCCAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:11664964-11665044 1.1e-05 41_[+5]_31 chrIII:13698019-13698099 1.1e-05 28_[+5]_44 chrIV:16995561-16995641 1.1e-05 62_[+5]_10 chrIII:11286250-11286330 1.1e-05 35_[+5]_37 chrIII:3499994-3500074 2.2e-05 45_[+5]_27 chrI:3176568-3176648 2.2e-05 50_[+5]_22 chrV:14443602-14443682 2.2e-05 50_[+5]_22 chrI:4958824-4958904 2.2e-05 25_[+5]_47 chrIII:11848480-11848560 2.2e-05 17_[+5]_55 chrI:12899121-12899201 2.2e-05 13_[+5]_59 chrIII:4196745-4196825 3.4e-05 26_[+5]_46 chrX:1853740-1853820 3.4e-05 30_[+5]_42 chrII:7810965-7811045 3.4e-05 9_[+5]_63 chrIII:10248650-10248730 4.4e-05 20_[+5]_52 chrV:2603191-2603271 4.4e-05 1_[+5]_71 chrIV:13487156-13487236 5.6e-05 6_[+5]_66 chrI:7935795-7935875 6.7e-05 68_[+5]_4 chrIII:3695521-3695601 7.9e-05 72_[+5] chrI:2487865-2487945 9.2e-05 49_[+5]_23 chrI:9080113-9080193 0.0001 33_[+5]_39 chrV:155398-155478 0.00012 37_[+5]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCCCCAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSCCCCAC width=8 seqs=21 chrI:11664964-11665044 ( 42) GCCCCCAC 1 chrIII:13698019-13698099 ( 29) GCCCCCAC 1 chrIV:16995561-16995641 ( 63) GCCCCCAC 1 chrIII:11286250-11286330 ( 36) GCCCCCAC 1 chrIII:3499994-3500074 ( 46) GGCCCCAC 1 chrI:3176568-3176648 ( 51) GGCCCCAC 1 chrV:14443602-14443682 ( 51) GGCCCCAC 1 chrI:4958824-4958904 ( 26) GGCCCCAC 1 chrIII:11848480-11848560 ( 18) GGCCCCAC 1 chrI:12899121-12899201 ( 14) GGCCCCAC 1 chrIII:4196745-4196825 ( 27) GCCACCAC 1 chrX:1853740-1853820 ( 31) GCCACCAC 1 chrII:7810965-7811045 ( 10) GCCACCAC 1 chrIII:10248650-10248730 ( 21) GCCCCCGC 1 chrV:2603191-2603271 ( 2) GCCCCCGC 1 chrIV:13487156-13487236 ( 7) GGCACCAC 1 chrI:7935795-7935875 ( 69) GGCCCCGC 1 chrIII:3695521-3695601 ( 73) GCCTCCAC 1 chrI:2487865-2487945 ( 50) GGCTCCAC 1 chrI:9080113-9080193 ( 34) GCCACCGC 1 chrV:155398-155478 ( 38) CCCCCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCCCCAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0668 E= 3.3e+000 -1104 -232 201 -1104 -1104 126 86 -1104 -1104 207 -1104 -1104 -12 149 -1104 -149 -1104 207 -1104 -1104 -1104 207 -1104 -1104 165 -1104 -31 -1104 -1104 207 -1104 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCCCCAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 3.3e+000 0.000000 0.047619 0.952381 0.000000 0.000000 0.571429 0.428571 0.000000 0.000000 1.000000 0.000000 0.000000 0.238095 0.666667 0.000000 0.095238 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.809524 0.000000 0.190476 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCCCCAC MEME-5 regular expression -------------------------------------------------------------------------------- G[CG]C[CA]CCAC -------------------------------------------------------------------------------- Time 21.41 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:6047886-6047966 4.39e-01 80 chrI:6048094-6048174 9.96e-01 80 chrV:156204-156284 1.46e-02 44_[+2(2.60e-05)]_28 chrI:1675882-1675962 4.08e-01 80 chrIV:4712595-4712675 3.15e-03 26_[+2(1.25e-05)]_14_[+2(1.25e-05)]_\ 24 chrI:12899121-12899201 1.22e-01 13_[+5(2.22e-05)]_59 chrIII:11093623-11093703 7.06e-01 80 chrIII:4862059-4862139 1.63e-01 9_[+2(2.60e-05)]_63 chrIV:12653264-12653344 4.81e-04 23_[+1(1.24e-05)]_20_[+2(2.60e-05)]_\ 21 chrI:1280227-1280307 9.54e-01 80 chrIV:17099269-17099349 6.85e-01 80 chrIV:17108358-17108438 8.59e-01 80 chrX:9917512-9917592 2.26e-04 15_[+1(7.44e-05)]_21_[+2(2.60e-05)]_\ 28 chrIV:13289510-13289590 1.02e-04 22_[+1(3.77e-05)]_6_[+2(8.58e-05)]_\ 36 chrX:9102309-9102389 9.99e-01 80 chrII:15008697-15008777 7.68e-01 80 chrI:6051193-6051273 8.09e-03 28_[+2(1.25e-05)]_44 chrIII:13474682-13474762 7.10e-01 80 chrI:6151581-6151661 2.40e-01 80 chrI:13835187-13835267 5.63e-04 21_[+1(2.38e-05)]_12_[+2(7.48e-05)]_\ 31 chrV:11504878-11504958 6.47e-01 80 chrI:1213501-1213581 9.99e-01 80 chrV:16553071-16553151 1.00e+00 80 chrII:1500580-1500660 9.59e-02 59_[+1(1.24e-05)]_13 chrI:13418782-13418862 9.53e-01 80 chrV:16022756-16022836 3.99e-03 46_[+1(2.38e-05)]_[+1(2.38e-05)]_18 chrX:915710-915790 3.11e-03 27_[+1(2.38e-05)]_45 chrV:4181885-4181965 5.37e-01 80 chrX:5205697-5205777 8.05e-03 47_[+1(3.77e-05)]_25 chrIV:1687290-1687370 9.62e-01 80 chrII:8137478-8137558 8.81e-01 80 chrX:3379231-3379311 6.06e-04 27_[+4(4.42e-05)]_27_[+1(1.24e-05)]_\ 10 chrIV:6747831-6747911 6.38e-02 80 chrV:14546008-14546088 9.79e-01 80 chrII:10714389-10714469 4.86e-02 80 chrI:12899322-12899402 1.00e+00 80 chrV:12649806-12649886 2.70e-03 16_[+2(1.25e-05)]_56 chrIII:3424068-3424148 6.87e-01 80 chrIV:13487156-13487236 1.04e-01 6_[+5(5.64e-05)]_66 chrIII:7858615-7858695 8.08e-01 80 chrI:2710632-2710712 3.46e-01 80 chrIII:11848480-11848560 4.88e-02 17_[+5(2.22e-05)]_8_[+5(2.22e-05)]_\ 39 chrV:2603191-2603271 4.19e-04 1_[+5(4.44e-05)]_11_[+2(4.94e-05)]_\ 52 chrI:4958824-4958904 7.54e-02 25_[+5(2.22e-05)]_47 chrIII:12178265-12178345 2.08e-03 9_[+3(1.29e-05)]_63 chrV:8784592-8784672 1.92e-01 80 chrIII:2697317-2697397 2.75e-01 80 chrIII:1540275-1540355 1.28e-03 8_[+1(2.38e-05)]_64 chrIII:4905522-4905602 1.00e+00 80 chrV:3218797-3218877 6.87e-01 80 chrI:6760278-6760358 1.38e-04 23_[+4(5.93e-05)]_9_[+1(1.24e-05)]_\ 32 chrM:5154-5234 9.73e-01 80 chrII:5228029-5228109 1.98e-01 80 chrII:5819828-5819908 6.37e-02 24_[+2(8.58e-05)]_48 chrII:484600-484680 8.24e-01 80 chrIII:9808331-9808411 9.23e-01 80 chrIII:4343294-4343374 8.86e-05 4_[+4(1.45e-05)]_[+2(8.58e-05)]_60 chrX:2043481-2043561 9.99e-01 80 chrI:10161980-10162060 4.18e-03 19_[+1(7.44e-05)]_44_[+4(5.93e-05)]_\ 1 chrX:2488587-2488667 1.22e-01 4_[+4(2.91e-05)]_68 chrI:9955958-9956038 1.56e-03 7_[+4(7.51e-05)]_41_[+2(4.94e-05)]_\ 16 chrX:7798499-7798579 2.73e-03 23_[+1(7.44e-05)]_13_[+2(9.99e-05)]_\ 28 chrIV:4070956-4071036 6.55e-01 80 chrIII:11286250-11286330 4.39e-04 35_[+5(1.11e-05)]_37 chrIII:10064309-10064389 4.23e-04 7_[+1(1.24e-05)]_7_[+1(3.77e-05)]_\ 50 chrI:4215768-4215848 5.89e-01 80 chrIII:4986983-4987063 1.47e-01 80 chrI:14756438-14756518 1.00e-02 35_[+2(4.94e-05)]_37 chrI:636761-636841 4.68e-04 43_[+1(3.77e-05)]_16_[+2(8.58e-05)]_\ 5 chrIV:4702265-4702345 8.00e-01 80 chrI:2487865-2487945 2.45e-02 49_[+5(9.16e-05)]_23 chrX:7569827-7569907 1.86e-03 8_[+2(8.58e-05)]_2_[+1(3.77e-05)]_\ 54 chrIV:9777708-9777788 7.32e-02 21_[+2(2.60e-05)]_51 chrIII:3322495-3322575 9.89e-01 80 chrV:14443602-14443682 8.19e-03 50_[+5(2.22e-05)]_22 chrI:1989364-1989444 3.59e-01 80 chrIII:9114949-9115029 9.60e-01 80 chrII:7537768-7537848 5.97e-02 80 chrIII:13293101-13293181 9.98e-01 80 chrI:5659137-5659217 3.83e-05 7_[+1(3.77e-05)]_20_[+2(2.60e-05)]_\ 37 chrIII:12673529-12673609 1.10e-06 18_[+4(1.45e-05)]_10_[+1(1.24e-05)]_\ 7_[+2(1.25e-05)]_21 chrX:8201443-8201523 5.56e-02 80 chrIII:12920068-12920148 8.44e-01 80 chrII:6097608-6097688 4.48e-06 23_[+4(1.45e-05)]_2_[+1(4.87e-05)]_\ 24_[+2(1.25e-05)]_7 chrV:10478322-10478402 7.29e-02 80 chrIV:10817177-10817257 1.51e-02 17_[+3(1.29e-05)]_55 chrI:8511412-8511492 4.71e-02 44_[+2(2.60e-05)]_28 chrX:11693254-11693334 4.39e-02 32_[+1(7.44e-05)]_40 chrM:1827-1907 2.63e-01 80 chrIV:1347161-1347241 2.25e-01 80 chrI:3636643-3636723 3.76e-04 28_[+2(2.60e-05)]_44 chrI:7711748-7711828 6.49e-01 80 chrX:11248147-11248227 1.12e-01 80 chrI:9393794-9393874 4.40e-03 8_[+4(5.93e-05)]_10_[+1(3.77e-05)]_\ 46 chrI:11222179-11222259 5.02e-03 5_[+2(4.94e-05)]_67 chrII:11393928-11394008 6.77e-02 80 chrM:3322-3402 9.56e-01 80 chrIV:8019907-8019987 7.99e-04 31_[+2(3.74e-05)]_11_[+2(1.25e-05)]_\ 22 chrIV:13262921-13263001 7.18e-01 80 chrX:3227063-3227143 4.15e-01 80 chrIV:4042415-4042495 3.84e-02 29_[+1(2.38e-05)]_43 chrI:5106172-5106252 8.77e-03 35_[+2(3.74e-05)]_37 chrV:10031922-10032002 1.81e-04 18_[+4(4.42e-05)]_[+2(8.58e-05)]_2_\ [+1(3.77e-05)]_36 chrII:9313424-9313504 9.33e-01 80 chrIII:10811227-10811307 9.98e-01 80 chrI:10469087-10469167 9.98e-01 80 chrI:5118899-5118979 4.10e-04 31_[+1(3.77e-05)]_31_[+2(2.60e-05)]_\ 2 chrI:15052690-15052770 4.98e-01 80 chrV:16746774-16746854 1.00e+00 80 chrII:7810965-7811045 1.03e-01 9_[+5(3.42e-05)]_63 chrX:4853175-4853255 2.67e-05 24_[+1(9.80e-05)]_36_[+3(1.29e-05)]_\ 4 chrX:10990758-10990838 2.78e-01 52_[+2(9.99e-05)]_20 chrX:2212313-2212393 4.16e-01 80 chrII:8748142-8748222 2.36e-02 4_[+3(5.51e-05)]_68 chrIII:10856984-10857064 9.76e-01 80 chrIV:11315030-11315110 4.23e-03 22_[+4(2.91e-05)]_50 chrII:7343815-7343895 9.15e-01 80 chrIV:12999291-12999371 8.45e-01 80 chrI:5281834-5281914 8.59e-04 6_[+2(1.25e-05)]_66 chrII:2991822-2991902 5.55e-01 80 chrI:11609236-11609316 1.46e-02 3_[+1(3.77e-05)]_69 chrIII:711184-711264 3.44e-02 62_[+3(1.29e-05)]_10 chrI:13470399-13470479 6.50e-05 31_[+4(2.91e-05)]_[+2(8.58e-05)]_20_\ [+1(2.38e-05)]_5 chrIV:6648788-6648868 9.97e-01 80 chrIII:8683865-8683945 9.58e-01 80 chrI:3176568-3176648 1.01e-03 42_[+5(3.42e-05)]_[+5(2.22e-05)]_22 chrII:476191-476271 4.17e-02 32_[+1(7.44e-05)]_40 chrX:4254992-4255072 2.17e-02 34_[+1(3.77e-05)]_38 chrI:13422627-13422707 6.40e-01 80 chrII:3482362-3482442 9.43e-03 11_[+1(2.38e-05)]_61 chrII:14142489-14142569 6.72e-01 80 chrII:6383329-6383409 7.67e-03 8_[+1(3.77e-05)]_10_[+1(2.38e-05)]_\ 46 chrIII:13359965-13360045 1.05e-03 25_[+2(1.25e-05)]_47 chrIII:7088069-7088149 8.99e-04 25_[+2(4.94e-05)]_9_[+2(1.25e-05)]_\ 30 chrV:20424949-20425029 3.24e-06 24_[+1(3.77e-05)]_31_[+2(1.25e-05)]_\ 9 chrIII:13187906-13187986 2.45e-03 80 chrI:3059188-3059268 4.92e-01 80 chrI:10469287-10469367 1.53e-02 80 chrIII:6013205-6013285 5.13e-01 80 chrII:2454959-2455039 7.33e-01 80 chrI:9080113-9080193 8.18e-04 29_[+2(4.94e-05)]_43 chrII:9025663-9025743 6.82e-01 80 chrII:15089579-15089659 1.28e-03 29_[+2(2.60e-05)]_43 chrV:4964421-4964501 3.33e-01 80 chrIV:16995561-16995641 1.78e-04 50_[+2(4.94e-05)]_4_[+5(1.11e-05)]_\ 10 chrX:2108331-2108411 2.28e-02 61_[+1(2.38e-05)]_11 chrI:8369773-8369853 6.21e-01 80 chrIII:7198998-7199078 1.32e-03 18_[+1(3.77e-05)]_20_[+2(4.94e-05)]_\ 26 chrV:10320340-10320420 9.68e-04 7_[+2(2.60e-05)]_14_[+2(1.25e-05)]_\ 43 chrII:14142209-14142289 5.44e-02 35_[+3(5.51e-05)]_37 chrX:9113969-9114049 5.20e-01 80 chrII:9491156-9491236 2.69e-02 63_[+3(1.29e-05)]_9 chrII:202031-202111 1.80e-01 80 chrIV:12621620-12621700 7.63e-01 80 chrV:11845036-11845116 3.52e-01 80 chrV:13409243-13409323 7.78e-05 4_[+4(1.45e-05)]_2_[+1(4.87e-05)]_\ 58 chrIII:6537333-6537413 6.62e-02 41_[+3(5.51e-05)]_31 chrIII:9639458-9639538 2.56e-02 80 chrX:1853740-1853820 9.52e-03 30_[+5(3.42e-05)]_42 chrIV:10197487-10197567 1.37e-03 12_[+1(7.44e-05)]_46_[+3(6.80e-05)]_\ 6 chrIII:13293301-13293381 1.00e+00 80 chrI:7251576-7251656 9.15e-01 80 chrIV:16954625-16954705 1.00e+00 80 chrI:15013993-15014073 6.59e-04 12_[+2(1.25e-05)]_21_[+2(2.60e-05)]_\ 31 chrIII:8144741-8144821 1.65e-05 22_[+4(1.45e-05)]_36_[+2(2.60e-05)]_\ 6 chrIII:4196745-4196825 5.07e-04 8_[+1(3.77e-05)]_10_[+5(3.42e-05)]_\ 46 chrI:8490934-8491014 1.29e-02 34_[+1(7.44e-05)]_38 chrX:13225519-13225599 9.05e-01 80 chrI:7935795-7935875 4.39e-03 68_[+5(6.66e-05)]_4 chrI:13421139-13421219 9.97e-01 80 chrV:10441306-10441386 8.77e-01 80 chrV:6107633-6107713 7.15e-03 36_[+1(3.77e-05)]_36 chrX:2488793-2488873 9.20e-01 80 chrII:2752703-2752783 5.72e-04 47_[+1(3.77e-05)]_10_[+2(2.60e-05)]_\ 7 chrV:7084875-7084955 3.42e-04 38_[+1(3.77e-05)]_8_[+2(3.74e-05)]_\ 18 chrIII:3605857-3605937 6.63e-01 80 chrX:2793681-2793761 2.76e-01 80 chrI:10175357-10175437 5.91e-01 80 chrII:5836531-5836611 1.00e+00 80 chrV:6433738-6433818 5.01e-02 80 chrII:14857067-14857147 2.92e-04 26_[+1(1.24e-05)]_35_[+2(1.25e-05)]_\ 3 chrIV:3521078-3521158 6.25e-01 80 chrX:1103882-1103962 1.32e-01 68_[+3(5.51e-05)]_4 chrV:14423402-14423482 3.39e-01 80 chrV:11644298-11644378 2.62e-02 44_[+1(3.77e-05)]_28 chrIII:6625435-6625515 1.53e-01 80 chrIII:13698019-13698099 2.88e-05 7_[+3(1.29e-05)]_13_[+5(1.11e-05)]_\ 44 chrI:1261643-1261723 1.55e-02 49_[+3(1.29e-05)]_23 chrIII:8529060-8529140 1.17e-03 31_[+1(3.77e-05)]_12_[+2(1.25e-05)]_\ 21 chrIV:7816567-7816647 1.57e-03 4_[+4(4.42e-05)]_10_[+1(3.77e-05)]_\ 50 chrIV:5860769-5860849 6.32e-01 80 chrX:5480237-5480317 3.54e-03 54_[+3(1.29e-05)]_3_[+4(7.51e-05)]_\ 7 chrI:77939-78019 8.98e-01 80 chrX:3411770-3411850 4.69e-03 6_[+1(4.87e-05)]_10_[+2(6.18e-05)]_\ 48 chrI:8125450-8125530 5.27e-01 80 chrIII:3476301-3476381 3.05e-02 19_[+3(5.51e-05)]_53 chrIV:3803414-3803494 1.94e-03 80 chrII:9319539-9319619 4.76e-04 36_[+1(3.77e-05)]_21_[+2(3.74e-05)]_\ 7 chrII:12022922-12023002 2.03e-02 12_[+1(3.77e-05)]_12_[+1(3.77e-05)]_\ 40 chrIV:13263152-13263232 5.03e-02 80 chrII:7857623-7857703 9.89e-01 80 chrIV:14032734-14032814 2.57e-01 80 chrII:9968473-9968553 1.21e-02 49_[+1(1.24e-05)]_23 chrX:13585002-13585082 1.64e-03 23_[+1(4.87e-05)]_16_[+2(2.60e-05)]_\ 25 chrV:20749201-20749281 8.52e-01 80 chrIII:3695521-3695601 2.87e-04 21_[+1(1.24e-05)]_43_[+5(7.91e-05)] chrI:4247554-4247634 2.12e-04 42_[+2(2.60e-05)]_2_[+1(9.80e-05)]_\ 20 chrIII:8700729-8700809 1.01e-01 4_[+4(2.91e-05)]_68 chrIV:6887864-6887944 2.14e-02 21_[+1(1.24e-05)]_51 chrII:5649576-5649656 5.23e-02 24_[+3(1.29e-05)]_48 chrM:8131-8211 9.93e-01 80 chrX:857799-857879 2.78e-01 80 chrIII:10123789-10123869 6.75e-01 80 chrI:11664964-11665044 7.43e-02 41_[+5(1.11e-05)]_31 chrII:7879485-7879565 4.44e-03 63_[+2(4.94e-05)]_9 chrI:7174496-7174576 5.32e-01 80 chrII:10538106-10538186 1.55e-04 16_[+4(1.45e-05)]_18_[+2(3.74e-05)]_\ 30 chrIII:4912501-4912581 4.80e-05 2_[+4(1.45e-05)]_15_[+2(3.74e-05)]_\ [+1(3.77e-05)]_39 chrIII:3499994-3500074 6.80e-02 45_[+5(2.22e-05)]_27 chrIII:4037492-4037572 7.75e-01 80 chrI:10262258-10262338 6.44e-02 80 chrV:20763303-20763383 8.62e-01 80 chrIII:558953-559033 9.65e-01 80 chrIII:5803102-5803182 1.22e-03 16_[+1(2.38e-05)]_1_[+1(3.77e-05)]_\ 6_[+1(4.87e-05)]_33 chrIII:5102793-5102873 3.94e-01 80 chrII:3036585-3036665 8.97e-01 80 chrIII:10248650-10248730 1.33e-01 20_[+5(4.44e-05)]_52 chrII:147660-147740 7.64e-03 2_[+1(2.38e-05)]_70 chrIII:8250411-8250491 2.12e-01 80 chrI:1034353-1034433 2.00e-02 37_[+2(2.60e-05)]_35 chrIII:11290686-11290766 5.00e-04 31_[+4(1.45e-05)]_9_[+1(1.24e-05)]_\ 24 chrX:5818422-5818502 7.63e-01 80 chrV:15082457-15082537 1.07e-03 22_[+4(1.45e-05)]_15_[+2(6.18e-05)]_\ 27 chrX:9637175-9637255 7.92e-01 80 chrII:2794497-2794577 6.55e-01 80 chrIII:13710613-13710693 2.88e-01 80 chrII:6858956-6859036 1.07e-01 80 chrIV:10085833-10085913 7.78e-01 80 chrV:12038959-12039039 6.86e-02 29_[+4(9.16e-05)]_43 chrIII:4999010-4999090 1.57e-04 39_[+2(1.25e-05)]_33 chrIII:8850806-8850886 1.04e-03 7_[+3(5.51e-05)]_34_[+2(2.60e-05)]_\ 23 chrII:4095727-4095807 5.28e-01 80 chrI:3248466-3248546 6.34e-01 80 chrIV:9263960-9264040 2.23e-01 80 chrIII:7926275-7926355 4.68e-01 80 chrII:6734823-6734903 7.50e-01 80 chrV:11933372-11933452 2.48e-01 80 chrV:155398-155478 6.99e-02 80 chrI:11670293-11670373 2.75e-01 80 chrIII:5108956-5109036 9.13e-04 34_[+1(1.24e-05)]_26_[+2(1.25e-05)]_\ 4 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n01.farnam.hpc.yale.internal ********************************************************************************