******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-18.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:146989-147069 1.0000 80 chrX:10410756-10410836 1.0000 80 chrIV:7426212-7426292 1.0000 80 chrII:9621268-9621348 1.0000 80 chrV:11307929-11308009 1.0000 80 chrI:7385306-7385386 1.0000 80 chrIV:8850925-8851005 1.0000 80 chrX:8986627-8986707 1.0000 80 chrII:8844893-8844973 1.0000 80 chrI:6769213-6769293 1.0000 80 chrIII:10816134-10816214 1.0000 80 chrI:14245229-14245309 1.0000 80 chrX:10176451-10176531 1.0000 80 chrV:12234725-12234805 1.0000 80 chrV:8802347-8802427 1.0000 80 chrII:4184127-4184207 1.0000 80 chrV:8196154-8196234 1.0000 80 chrX:14292812-14292892 1.0000 80 chrV:11074586-11074666 1.0000 80 chrX:17670563-17670643 1.0000 80 chrIV:607781-607861 1.0000 80 chrII:9757815-9757895 1.0000 80 chrIII:3927620-3927700 1.0000 80 chrX:5195594-5195674 1.0000 80 chrV:12269493-12269573 1.0000 80 chrX:14054227-14054307 1.0000 80 chrV:2803467-2803547 1.0000 80 chrX:6591861-6591941 1.0000 80 chrX:2950388-2950468 1.0000 80 chrX:10949943-10950023 1.0000 80 chrI:9188025-9188105 1.0000 80 chrI:14917510-14917590 1.0000 80 chrI:4035482-4035562 1.0000 80 chrX:9832328-9832408 1.0000 80 chrIII:6158080-6158160 1.0000 80 chrIII:7880522-7880602 1.0000 80 chrII:6303351-6303431 1.0000 80 chrX:3733515-3733595 1.0000 80 chrX:8053196-8053276 1.0000 80 chrIV:9080371-9080451 1.0000 80 chrX:7523937-7524017 1.0000 80 chrII:5841320-5841400 1.0000 80 chrX:3537039-3537119 1.0000 80 chrIII:6742815-6742895 1.0000 80 chrV:6768646-6768726 1.0000 80 chrIII:8815854-8815934 1.0000 80 chrX:14684522-14684602 1.0000 80 chrIV:11067176-11067256 1.0000 80 chrV:9958766-9958846 1.0000 80 chrV:11036207-11036287 1.0000 80 chrX:17043084-17043164 1.0000 80 chrX:17667452-17667532 1.0000 80 chrV:12477324-12477404 1.0000 80 chrI:7952524-7952604 1.0000 80 chrV:4777738-4777818 1.0000 80 chrX:8763070-8763150 1.0000 80 chrII:8499221-8499301 1.0000 80 chrX:7715638-7715718 1.0000 80 chrII:7722934-7723014 1.0000 80 chrV:5303096-5303176 1.0000 80 chrI:10262266-10262346 1.0000 80 chrV:6342657-6342737 1.0000 80 chrIV:7098695-7098775 1.0000 80 chrX:8724013-8724093 1.0000 80 chrII:13500781-13500861 1.0000 80 chrIII:13616967-13617047 1.0000 80 chrIII:10817184-10817264 1.0000 80 chrV:5296124-5296204 1.0000 80 chrIII:5563861-5563941 1.0000 80 chrII:7640306-7640386 1.0000 80 chrX:16534679-16534759 1.0000 80 chrX:14287993-14288073 1.0000 80 chrV:1471308-1471388 1.0000 80 chrV:281209-281289 1.0000 80 chrX:3689469-3689549 1.0000 80 chrI:14533011-14533091 1.0000 80 chrI:9739564-9739644 1.0000 80 chrX:17456984-17457064 1.0000 80 chrV:11309086-11309166 1.0000 80 chrX:17528257-17528337 1.0000 80 chrV:13084091-13084171 1.0000 80 chrI:4050746-4050826 1.0000 80 chrX:16392290-16392370 1.0000 80 chrI:3988738-3988818 1.0000 80 chrV:20793945-20794025 1.0000 80 chrIII:10248884-10248964 1.0000 80 chrI:5599525-5599605 1.0000 80 chrX:17458987-17459067 1.0000 80 chrIII:5129425-5129505 1.0000 80 chrII:9072634-9072714 1.0000 80 chrV:6346190-6346270 1.0000 80 chrX:7573686-7573766 1.0000 80 chrI:3405893-3405973 1.0000 80 chrX:10068671-10068751 1.0000 80 chrII:8783582-8783662 1.0000 80 chrIII:2027634-2027714 1.0000 80 chrV:6204254-6204334 1.0000 80 chrX:9161437-9161517 1.0000 80 chrIII:4113764-4113844 1.0000 80 chrX:8789208-8789288 1.0000 80 chrX:15338344-15338424 1.0000 80 chrV:284960-285040 1.0000 80 chrX:16098245-16098325 1.0000 80 chrIII:6655954-6656034 1.0000 80 chrIII:3601372-3601452 1.0000 80 chrI:5777420-5777500 1.0000 80 chrIV:15274275-15274355 1.0000 80 chrIII:2170762-2170842 1.0000 80 chrX:13873534-13873614 1.0000 80 chrIII:3783033-3783113 1.0000 80 chrV:6751834-6751914 1.0000 80 chrI:4941299-4941379 1.0000 80 chrIV:12010594-12010674 1.0000 80 chrIV:12113150-12113230 1.0000 80 chrI:5015800-5015880 1.0000 80 chrI:7383268-7383348 1.0000 80 chrIV:6014015-6014095 1.0000 80 chrX:5509630-5509710 1.0000 80 chrX:8276411-8276491 1.0000 80 chrII:7635408-7635488 1.0000 80 chrV:14871555-14871635 1.0000 80 chrI:14898720-14898800 1.0000 80 chrIV:11350985-11351065 1.0000 80 chrV:12518870-12518950 1.0000 80 chrI:3891519-3891599 1.0000 80 chrX:6410507-6410587 1.0000 80 chrI:7040901-7040981 1.0000 80 chrV:9112052-9112132 1.0000 80 chrV:12517913-12517993 1.0000 80 chrIII:6405263-6405343 1.0000 80 chrX:10618850-10618930 1.0000 80 chrV:10146960-10147040 1.0000 80 chrX:2189007-2189087 1.0000 80 chrIII:5564918-5564998 1.0000 80 chrX:15575572-15575652 1.0000 80 chrX:493123-493203 1.0000 80 chrX:4266383-4266463 1.0000 80 chrIII:9731466-9731546 1.0000 80 chrIII:7217230-7217310 1.0000 80 chrI:10751803-10751883 1.0000 80 chrV:7822771-7822851 1.0000 80 chrIII:4731474-4731554 1.0000 80 chrIV:11710499-11710579 1.0000 80 chrX:14731981-14732061 1.0000 80 chrIII:10526064-10526144 1.0000 80 chrV:2809652-2809732 1.0000 80 chrX:15014109-15014189 1.0000 80 chrIV:7095709-7095789 1.0000 80 chrX:11379479-11379559 1.0000 80 chrIII:7560052-7560132 1.0000 80 chrV:8667520-8667600 1.0000 80 chrIII:11942856-11942936 1.0000 80 chrV:11836249-11836329 1.0000 80 chrIV:4506789-4506869 1.0000 80 chrX:4957371-4957451 1.0000 80 chrI:6882066-6882146 1.0000 80 chrIV:7723666-7723746 1.0000 80 chrII:6709168-6709248 1.0000 80 chrI:7028329-7028409 1.0000 80 chrIV:9538410-9538490 1.0000 80 chrV:11140490-11140570 1.0000 80 chrIV:12637486-12637566 1.0000 80 chrI:5997574-5997654 1.0000 80 chrI:7036863-7036943 1.0000 80 chrIV:11649180-11649260 1.0000 80 chrV:11080483-11080563 1.0000 80 chrI:2580184-2580264 1.0000 80 chrI:14863583-14863663 1.0000 80 chrIV:7390454-7390534 1.0000 80 chrIV:6393402-6393482 1.0000 80 chrII:1375680-1375760 1.0000 80 chrV:4524042-4524122 1.0000 80 chrII:6170395-6170475 1.0000 80 chrII:6236469-6236549 1.0000 80 chrIII:6402541-6402621 1.0000 80 chrV:14909481-14909561 1.0000 80 chrII:6707696-6707776 1.0000 80 chrV:12479141-12479221 1.0000 80 chrV:19546836-19546916 1.0000 80 chrX:15019463-15019543 1.0000 80 chrX:5209647-5209727 1.0000 80 chrI:4030694-4030774 1.0000 80 chrX:16655434-16655514 1.0000 80 chrX:5592687-5592767 1.0000 80 chrI:4840976-4841056 1.0000 80 chrX:14653719-14653799 1.0000 80 chrX:1082083-1082163 1.0000 80 chrV:4157495-4157575 1.0000 80 chrX:13204896-13204976 1.0000 80 chrIV:5753395-5753475 1.0000 80 chrX:2620487-2620567 1.0000 80 chrII:4518453-4518533 1.0000 80 chrIV:3168936-3169016 1.0000 80 chrI:4046759-4046839 1.0000 80 chrI:7381104-7381184 1.0000 80 chrIV:1758771-1758851 1.0000 80 chrIV:8605403-8605483 1.0000 80 chrI:4936286-4936366 1.0000 80 chrI:5176091-5176171 1.0000 80 chrI:6879582-6879662 1.0000 80 chrV:6030692-6030772 1.0000 80 chrIII:5835308-5835388 1.0000 80 chrIII:5894376-5894456 1.0000 80 chrV:11506486-11506566 1.0000 80 chrIII:1678852-1678932 1.0000 80 chrIV:1108227-1108307 1.0000 80 chrIII:9457520-9457600 1.0000 80 chrV:11082612-11082692 1.0000 80 chrV:18581926-18582006 1.0000 80 chrII:13789944-13790024 1.0000 80 chrIII:6988205-6988285 1.0000 80 chrIII:6138658-6138738 1.0000 80 chrV:10727865-10727945 1.0000 80 chrI:14628091-14628171 1.0000 80 chrIV:10979779-10979859 1.0000 80 chrIII:10824360-10824440 1.0000 80 chrII:526518-526598 1.0000 80 chrI:10074865-10074945 1.0000 80 chrX:16389441-16389521 1.0000 80 chrIV:14606604-14606684 1.0000 80 chrIII:822637-822717 1.0000 80 chrI:2591613-2591693 1.0000 80 chrV:13088772-13088852 1.0000 80 chrV:6930500-6930580 1.0000 80 chrI:5589616-5589696 1.0000 80 chrIII:3994602-3994682 1.0000 80 chrV:14800443-14800523 1.0000 80 chrII:10204844-10204924 1.0000 80 chrI:435526-435606 1.0000 80 chrV:1480948-1481028 1.0000 80 chrX:16525796-16525876 1.0000 80 chrX:11035685-11035765 1.0000 80 chrX:13637643-13637723 1.0000 80 chrIV:3163679-3163759 1.0000 80 chrII:6028694-6028774 1.0000 80 chrIV:5134152-5134232 1.0000 80 chrII:11713670-11713750 1.0000 80 chrIV:11489863-11489943 1.0000 80 chrIV:8533487-8533567 1.0000 80 chrI:14862315-14862395 1.0000 80 chrV:20451948-20452028 1.0000 80 chrIII:9083414-9083494 1.0000 80 chrIV:9928621-9928701 1.0000 80 chrIII:8287695-8287775 1.0000 80 chrII:8105188-8105268 1.0000 80 chrII:6136901-6136981 1.0000 80 chrI:10105493-10105573 1.0000 80 chrX:16812077-16812157 1.0000 80 chrX:13605046-13605126 1.0000 80 chrI:14936697-14936777 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ceh-18/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-18.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.267 C 0.226 G 0.243 T 0.264 Background letter frequencies (from file dataset with add-one prior applied): A 0.267 C 0.226 G 0.243 T 0.264 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTYTCTYT MEME-1 width = 8 sites = 85 llr = 653 E-value = 6.5e-037 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTYTCTYT MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 225:a:52 probability G ::1:::1: matrix T 884a:a48 bits 2.1 * 1.9 *** 1.7 *** 1.5 *** Relative 1.3 ** *** * Entropy 1.1 ** *** * (11.1 bits) 0.9 ** ***** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTCTCTCT consensus CCT T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTCTYT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:13605046-13605126 15 1.48e-05 CTATCCATTC TTCTCTCT CAATCATCAT chrI:10105493-10105573 1 1.48e-05 . TTCTCTCT CTCTTTTCAT chrI:435526-435606 65 1.48e-05 TTTCctctct ttctctct ctctctct chrI:10074865-10074945 53 1.48e-05 GTTTGTTGTC TTCTCTCT CTCAAAACTC chrIII:9457520-9457600 19 1.48e-05 CCTTGGCCTT TTCTCTCT GTCAGCTGTC chrIV:8605403-8605483 34 1.48e-05 TATGAGAGAT TTCTCTCT GTTTTCTTTT chrI:10751803-10751883 56 1.48e-05 TTTGACTCTT TTCTCTCT TTTTTTTTCT chrV:9112052-9112132 47 1.48e-05 TGTGTTGTTG TTCTCTCT ATCTCTCCTT chrX:6410507-6410587 20 1.48e-05 GCTCTCGTCT TTCTCTCT GCCTGGGGCT chrIV:11350985-11351065 38 1.48e-05 AATGATAAAT TTCTCTCT TTTTCTTTGT chrI:4941299-4941379 33 1.48e-05 GCCCCCTGGG TTCTCTCT GTGTGCATCG chrIII:5129425-5129505 16 1.48e-05 ACTGctctct ttctctct ctctctacct chrI:14533011-14533091 49 1.48e-05 AGCTGCCACC TTCTCTCT CTCCTCCCGT chrIII:13616967-13617047 69 1.48e-05 CTTTTCATCT TTCTCTCT GCAT chrI:9188025-9188105 69 1.48e-05 TTTCTGTTTC TTCTCTCT CTCT chrX:146989-147069 12 1.48e-05 CAAAAAATTT TTCTCTCT CCGCCACACG chrIV:3163679-3163759 32 3.21e-05 CTCGGTGCTC TTTTCTCT TTTCAAGCGC chrIII:1678852-1678932 10 3.21e-05 GGTGCCGGC TTTTCTCT CAAAAGATAT chrIV:5753395-5753475 70 3.21e-05 TTTGTCTTCA TTTTCTCT TTT chrIV:6393402-6393482 22 3.21e-05 ATTCTTCTAT TTTTCTCT TCAAAAATAC chrIII:2170762-2170842 16 3.21e-05 CTTCTTCATT TTTTCTCT TTTTTCCGAA chrX:3537039-3537119 43 3.21e-05 CCTTCTACAC TTTTCTCT CATGGTCCCA chrIII:822637-822717 49 4.94e-05 CAATCCACAC TTCTCTTT TCTCCTGGAT chrX:17043084-17043164 35 4.94e-05 AACCTCTCAT TTCTCTTT TGATCTCATT chrV:12269493-12269573 73 4.94e-05 ACGCATGATA TTCTCTTT chrX:5209647-5209727 72 6.96e-05 TGCTCTCCCG TTTTCTTT T chrV:12479141-12479221 29 6.96e-05 CCTACTATCT TTTTCTTT TTTTTTTCTT chrV:14909481-14909561 21 6.96e-05 CCATCTCTCT TTTTCTTT CTTTCTAATT chrIV:11649180-11649260 49 6.96e-05 AATCTTTGTG TTTTCTTT CATCTTCTTC chrV:8667520-8667600 59 6.96e-05 TACACGTCTT TTTTCTTT TACCGAGTGC chrV:12518870-12518950 26 6.96e-05 AAATTTGTCG TTTTCTTT TTCATTGTCT chrIII:4113764-4113844 41 6.96e-05 ACGGAGCTCT TTTTCTTT CATCTTCGAA chrV:13084091-13084171 47 6.96e-05 CTTCTTTGTT TTTTCTTT TGCAAAATGT chrV:2803467-2803547 5 6.96e-05 CCTC TTTTCTTT TTTTGTCTGA chrIII:10816134-10816214 53 6.96e-05 TTACACTATT TTTTCTTT AGGGACTCTT chrII:10204844-10204924 59 8.23e-05 TCTATGTCAT CTCTCTCT CTGATCTTTC chrI:5589616-5589696 28 8.23e-05 CTGCGCCTCA CTCTCTCT TCATCAAGAC chrIII:5564918-5564998 3 8.23e-05 CC CTCTCTCT ATCTCTCGGG chrIV:14606604-14606684 67 9.49e-05 TTCCTCATCC TCCTCTCT TGTTTC chrI:14898720-14898800 1 9.49e-05 . TCCTCTCT TATTCTCGCC chrV:11140490-11140570 25 1.10e-04 TCTCAAATAC CTTTCTCT GTGAAACAAT chrIII:7217230-7217310 24 1.10e-04 CAGTGGGTAC CTTTCTCT CGCATCTCTC chrV:9958766-9958846 72 1.10e-04 TGTGTCTCCG CTTTCTCT C chrII:4184127-4184207 33 1.10e-04 ATTTCCCTCT CTTTCTCT CGTCCATCCT chrIII:6988205-6988285 10 1.39e-04 ACTCTCTCC CTCTCTTT CAATGTTAAA chrI:4046759-4046839 29 1.39e-04 ttctttctat ctctcttt atctCGGCAT chrV:10146960-10147040 54 1.39e-04 GCTCATTTTT TCTTCTCT GGAGCCGCCA chrX:17456984-17457064 41 1.39e-04 CGTGTCTGTG CTCTCTTT GGGGATCTCA chrV:1471308-1471388 14 1.39e-04 TTTCGCATCT TCTTCTCT TAATGTGAGC chrX:14054227-14054307 50 1.39e-04 TCCTGCGCCG TCTTCTCT ACTCCCGATG chrX:7523937-7524017 62 1.84e-04 TCGCCCTCGT CTTTCTTT CTTCTTTTTT chrIV:9928621-9928701 6 2.16e-04 CTCTT TCTTCTTT GAGTGATACG chrIV:7390454-7390534 16 2.16e-04 GTAAAATGTT TCTTCTTT CTAAAATCAG chrX:14292812-14292892 11 2.16e-04 tcttatgctt tcttcttt tccttcttGC chrIII:10824360-10824440 2 2.47e-04 C TTCTCTTC TCGCCAATCA chrX:15575572-15575652 16 2.47e-04 TGCACCCGCC TTCTCTTC CTCTTCTTCA chrV:5303096-5303176 31 2.47e-04 ATCTCTCTGT TTCTCTTC CACAACCCGA chrII:11713670-11713750 7 2.63e-04 AAAGCA TTCTCTGT GATAAATGGA chrI:2591613-2591693 69 2.63e-04 TTGCTCCGCG TTCTCTGT CACT chrX:14653719-14653799 68 2.63e-04 TCCGCATTAA TTCTCTGT CCACT chrX:13873534-13873614 20 2.63e-04 TTTCATCTAC TTCTCTGT TTCTTGCTTA chrIII:8287695-8287775 26 2.74e-04 GACATCGCCA CCCTCTCT GATGCTTCTC chrIII:5563861-5563941 64 2.91e-04 TGCCTGTGCT TTTTCTTC CCGTCGGCT chrX:2950388-2950468 70 2.91e-04 CTGGCTCTCA TTTTCTTC TTC chrII:8105188-8105268 67 3.28e-04 ATGACAGTTG TTGTCTTT TTGATA chrIII:3994602-3994682 46 3.28e-04 GTGAAGTGTT TTGTCTTT TAATCAGTGA chrV:6930500-6930580 25 3.28e-04 CTAAAAGTAA TTGTCTTT CATCGGAATA chrX:14287993-14288073 31 3.28e-04 GAACGAACAG TTGTCTTT GTGGGAAGAG chrI:14863583-14863663 1 3.64e-04 . CCCTCTTT GGGGATTCTA chrI:3405893-3405973 68 3.64e-04 ATAACAGGGG CCCTCTTT CTCAC chrV:281209-281289 57 3.64e-04 TATCATCTAT CTCTCTCC ACCCTAGTTC chrII:13789944-13790024 51 3.93e-04 ttcttcttcc tcctctcc tatcatcaag chrI:7036863-7036943 19 3.93e-04 AGTAATTCAT TTATCTCT GCCTCTCTGC chrV:12517913-12517993 17 3.93e-04 TTCATATCCA TTATCTCT TCATTTCACC chrIV:10979779-10979859 57 4.20e-04 TCTTCTTCAA CTTTCTCC TGAAGAGATG chrX:8763070-8763150 35 4.20e-04 TCCCATCCAC CTTTCTCC TCCTCCGCAA chrV:11080483-11080563 73 4.59e-04 ATGGGTGGAG TCTTCTCC chrIV:8533487-8533567 54 5.19e-04 TCTCGAAATT TCGTCTCT CAACCTCTCT chrV:1480948-1481028 54 5.19e-04 GAGTTTTATT TTATCTTT TCGTTTTTCG chrV:11082612-11082692 46 5.19e-04 AAGATACTGC TCGTCTCT CGAGAAAGAA chrI:4936286-4936366 8 5.19e-04 ttcttct tcctcttc ttaatcaact chrIII:5894376-5894456 45 5.33e-04 AACCGGCTCC TCCTCTGT ACCGGGGAAG chrIV:6014015-6014095 17 5.48e-04 AGTGTAATGT CTTTCTTC AATCTGCCAT chrX:8724013-8724093 49 5.95e-04 TTACTGCTTG CTTTCTGT TTCTTGAAAG chrI:7385306-7385386 44 5.95e-04 CATCTCACAC TCTTCTTC TACTACACAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTCTYT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:13605046-13605126 1.5e-05 14_[+1]_58 chrI:10105493-10105573 1.5e-05 [+1]_72 chrI:435526-435606 1.5e-05 64_[+1]_8 chrI:10074865-10074945 1.5e-05 52_[+1]_20 chrIII:9457520-9457600 1.5e-05 18_[+1]_54 chrIV:8605403-8605483 1.5e-05 33_[+1]_39 chrI:10751803-10751883 1.5e-05 55_[+1]_17 chrV:9112052-9112132 1.5e-05 46_[+1]_26 chrX:6410507-6410587 1.5e-05 19_[+1]_53 chrIV:11350985-11351065 1.5e-05 37_[+1]_35 chrI:4941299-4941379 1.5e-05 32_[+1]_40 chrIII:5129425-5129505 1.5e-05 15_[+1]_57 chrI:14533011-14533091 1.5e-05 48_[+1]_24 chrIII:13616967-13617047 1.5e-05 68_[+1]_4 chrI:9188025-9188105 1.5e-05 68_[+1]_4 chrX:146989-147069 1.5e-05 11_[+1]_61 chrIV:3163679-3163759 3.2e-05 31_[+1]_41 chrIII:1678852-1678932 3.2e-05 9_[+1]_63 chrIV:5753395-5753475 3.2e-05 69_[+1]_3 chrIV:6393402-6393482 3.2e-05 21_[+1]_51 chrIII:2170762-2170842 3.2e-05 15_[+1]_57 chrX:3537039-3537119 3.2e-05 42_[+1]_30 chrIII:822637-822717 4.9e-05 48_[+1]_24 chrX:17043084-17043164 4.9e-05 34_[+1]_38 chrV:12269493-12269573 4.9e-05 72_[+1] chrX:5209647-5209727 7e-05 71_[+1]_1 chrV:12479141-12479221 7e-05 28_[+1]_44 chrV:14909481-14909561 7e-05 20_[+1]_52 chrIV:11649180-11649260 7e-05 48_[+1]_24 chrV:8667520-8667600 7e-05 58_[+1]_14 chrV:12518870-12518950 7e-05 25_[+1]_47 chrIII:4113764-4113844 7e-05 40_[+1]_32 chrV:13084091-13084171 7e-05 46_[+1]_26 chrV:2803467-2803547 7e-05 4_[+1]_68 chrIII:10816134-10816214 7e-05 52_[+1]_20 chrII:10204844-10204924 8.2e-05 58_[+1]_14 chrI:5589616-5589696 8.2e-05 27_[+1]_45 chrIII:5564918-5564998 8.2e-05 2_[+1]_70 chrIV:14606604-14606684 9.5e-05 66_[+1]_6 chrI:14898720-14898800 9.5e-05 [+1]_72 chrV:11140490-11140570 0.00011 24_[+1]_48 chrIII:7217230-7217310 0.00011 23_[+1]_49 chrV:9958766-9958846 0.00011 71_[+1]_1 chrII:4184127-4184207 0.00011 32_[+1]_40 chrIII:6988205-6988285 0.00014 9_[+1]_63 chrI:4046759-4046839 0.00014 28_[+1]_44 chrV:10146960-10147040 0.00014 53_[+1]_19 chrX:17456984-17457064 0.00014 40_[+1]_32 chrV:1471308-1471388 0.00014 13_[+1]_59 chrX:14054227-14054307 0.00014 49_[+1]_23 chrX:7523937-7524017 0.00018 61_[+1]_11 chrIV:9928621-9928701 0.00022 5_[+1]_67 chrIV:7390454-7390534 0.00022 15_[+1]_57 chrX:14292812-14292892 0.00022 10_[+1]_62 chrIII:10824360-10824440 0.00025 1_[+1]_71 chrX:15575572-15575652 0.00025 15_[+1]_57 chrV:5303096-5303176 0.00025 30_[+1]_42 chrII:11713670-11713750 0.00026 6_[+1]_66 chrI:2591613-2591693 0.00026 68_[+1]_4 chrX:14653719-14653799 0.00026 67_[+1]_5 chrX:13873534-13873614 0.00026 19_[+1]_53 chrIII:8287695-8287775 0.00027 25_[+1]_47 chrIII:5563861-5563941 0.00029 63_[+1]_9 chrX:2950388-2950468 0.00029 69_[+1]_3 chrII:8105188-8105268 0.00033 66_[+1]_6 chrIII:3994602-3994682 0.00033 45_[+1]_27 chrV:6930500-6930580 0.00033 24_[+1]_48 chrX:14287993-14288073 0.00033 30_[+1]_42 chrI:14863583-14863663 0.00036 [+1]_72 chrI:3405893-3405973 0.00036 67_[+1]_5 chrV:281209-281289 0.00036 56_[+1]_16 chrII:13789944-13790024 0.00039 50_[+1]_22 chrI:7036863-7036943 0.00039 18_[+1]_54 chrV:12517913-12517993 0.00039 16_[+1]_56 chrIV:10979779-10979859 0.00042 56_[+1]_16 chrX:8763070-8763150 0.00042 34_[+1]_38 chrV:11080483-11080563 0.00046 72_[+1] chrIV:8533487-8533567 0.00052 53_[+1]_19 chrV:1480948-1481028 0.00052 53_[+1]_19 chrV:11082612-11082692 0.00052 45_[+1]_27 chrI:4936286-4936366 0.00052 7_[+1]_65 chrIII:5894376-5894456 0.00053 44_[+1]_28 chrIV:6014015-6014095 0.00055 16_[+1]_56 chrX:8724013-8724093 0.00059 48_[+1]_24 chrI:7385306-7385386 0.00059 43_[+1]_29 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTCTYT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTYTCTYT width=8 seqs=85 chrX:13605046-13605126 ( 15) TTCTCTCT 1 chrI:10105493-10105573 ( 1) TTCTCTCT 1 chrI:435526-435606 ( 65) TTCTCTCT 1 chrI:10074865-10074945 ( 53) TTCTCTCT 1 chrIII:9457520-9457600 ( 19) TTCTCTCT 1 chrIV:8605403-8605483 ( 34) TTCTCTCT 1 chrI:10751803-10751883 ( 56) TTCTCTCT 1 chrV:9112052-9112132 ( 47) TTCTCTCT 1 chrX:6410507-6410587 ( 20) TTCTCTCT 1 chrIV:11350985-11351065 ( 38) TTCTCTCT 1 chrI:4941299-4941379 ( 33) TTCTCTCT 1 chrIII:5129425-5129505 ( 16) TTCTCTCT 1 chrI:14533011-14533091 ( 49) TTCTCTCT 1 chrIII:13616967-13617047 ( 69) TTCTCTCT 1 chrI:9188025-9188105 ( 69) TTCTCTCT 1 chrX:146989-147069 ( 12) TTCTCTCT 1 chrIV:3163679-3163759 ( 32) TTTTCTCT 1 chrIII:1678852-1678932 ( 10) TTTTCTCT 1 chrIV:5753395-5753475 ( 70) TTTTCTCT 1 chrIV:6393402-6393482 ( 22) TTTTCTCT 1 chrIII:2170762-2170842 ( 16) TTTTCTCT 1 chrX:3537039-3537119 ( 43) TTTTCTCT 1 chrIII:822637-822717 ( 49) TTCTCTTT 1 chrX:17043084-17043164 ( 35) TTCTCTTT 1 chrV:12269493-12269573 ( 73) TTCTCTTT 1 chrX:5209647-5209727 ( 72) TTTTCTTT 1 chrV:12479141-12479221 ( 29) TTTTCTTT 1 chrV:14909481-14909561 ( 21) TTTTCTTT 1 chrIV:11649180-11649260 ( 49) TTTTCTTT 1 chrV:8667520-8667600 ( 59) TTTTCTTT 1 chrV:12518870-12518950 ( 26) TTTTCTTT 1 chrIII:4113764-4113844 ( 41) TTTTCTTT 1 chrV:13084091-13084171 ( 47) TTTTCTTT 1 chrV:2803467-2803547 ( 5) TTTTCTTT 1 chrIII:10816134-10816214 ( 53) TTTTCTTT 1 chrII:10204844-10204924 ( 59) CTCTCTCT 1 chrI:5589616-5589696 ( 28) CTCTCTCT 1 chrIII:5564918-5564998 ( 3) CTCTCTCT 1 chrIV:14606604-14606684 ( 67) TCCTCTCT 1 chrI:14898720-14898800 ( 1) TCCTCTCT 1 chrV:11140490-11140570 ( 25) CTTTCTCT 1 chrIII:7217230-7217310 ( 24) CTTTCTCT 1 chrV:9958766-9958846 ( 72) CTTTCTCT 1 chrII:4184127-4184207 ( 33) CTTTCTCT 1 chrIII:6988205-6988285 ( 10) CTCTCTTT 1 chrI:4046759-4046839 ( 29) CTCTCTTT 1 chrV:10146960-10147040 ( 54) TCTTCTCT 1 chrX:17456984-17457064 ( 41) CTCTCTTT 1 chrV:1471308-1471388 ( 14) TCTTCTCT 1 chrX:14054227-14054307 ( 50) TCTTCTCT 1 chrX:7523937-7524017 ( 62) CTTTCTTT 1 chrIV:9928621-9928701 ( 6) TCTTCTTT 1 chrIV:7390454-7390534 ( 16) TCTTCTTT 1 chrX:14292812-14292892 ( 11) TCTTCTTT 1 chrIII:10824360-10824440 ( 2) TTCTCTTC 1 chrX:15575572-15575652 ( 16) TTCTCTTC 1 chrV:5303096-5303176 ( 31) TTCTCTTC 1 chrII:11713670-11713750 ( 7) TTCTCTGT 1 chrI:2591613-2591693 ( 69) TTCTCTGT 1 chrX:14653719-14653799 ( 68) TTCTCTGT 1 chrX:13873534-13873614 ( 20) TTCTCTGT 1 chrIII:8287695-8287775 ( 26) CCCTCTCT 1 chrIII:5563861-5563941 ( 64) TTTTCTTC 1 chrX:2950388-2950468 ( 70) TTTTCTTC 1 chrII:8105188-8105268 ( 67) TTGTCTTT 1 chrIII:3994602-3994682 ( 46) TTGTCTTT 1 chrV:6930500-6930580 ( 25) TTGTCTTT 1 chrX:14287993-14288073 ( 31) TTGTCTTT 1 chrI:14863583-14863663 ( 1) CCCTCTTT 1 chrI:3405893-3405973 ( 68) CCCTCTTT 1 chrV:281209-281289 ( 57) CTCTCTCC 1 chrII:13789944-13790024 ( 51) TCCTCTCC 1 chrI:7036863-7036943 ( 19) TTATCTCT 1 chrV:12517913-12517993 ( 17) TTATCTCT 1 chrIV:10979779-10979859 ( 57) CTTTCTCC 1 chrX:8763070-8763150 ( 35) CTTTCTCC 1 chrV:11080483-11080563 ( 73) TCTTCTCC 1 chrIV:8533487-8533567 ( 54) TCGTCTCT 1 chrV:1480948-1481028 ( 54) TTATCTTT 1 chrV:11082612-11082692 ( 46) TCGTCTCT 1 chrI:4936286-4936366 ( 8) TCCTCTTC 1 chrIII:5894376-5894456 ( 45) TCCTCTGT 1 chrIV:6014015-6014095 ( 17) CTTTCTTC 1 chrX:8724013-8724093 ( 49) CTTTCTGT 1 chrI:7385306-7385386 ( 44) TCTTCTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTCTYT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.25601 E= 6.5e-037 -1305 -1 -1305 156 -1305 -9 -1305 158 -292 110 -178 64 -1305 -1305 -1305 192 -1305 215 -1305 -1305 -1305 -1305 -1305 192 -1305 120 -178 64 -1305 -56 -1305 168 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTCTYT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 85 E= 6.5e-037 0.000000 0.223529 0.000000 0.776471 0.000000 0.211765 0.000000 0.788235 0.035294 0.482353 0.070588 0.411765 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.517647 0.070588 0.411765 0.000000 0.152941 0.000000 0.847059 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTYTCTYT MEME-1 regular expression -------------------------------------------------------------------------------- [TC][TC][CT]TCT[CT]T -------------------------------------------------------------------------------- Time 8.89 secs. ******************************************************************************** ******************************************************************************** MOTIF GARRAAGA MEME-2 width = 8 sites = 93 llr = 667 E-value = 1.2e-024 ******************************************************************************** -------------------------------------------------------------------------------- Motif GARRAAGA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2947792a pos.-specific C :1:::::: probability G 8:63318: matrix T :::::::: bits 2.1 1.9 * 1.7 * 1.5 ** * * Relative 1.3 ** * * Entropy 1.1 *** **** (10.4 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGAAAGA consensus AGG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRAAGA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:11082612-11082692 55 1.95e-05 CTCGTCTCTC GAGAAAGA AAGCACACAT chrIV:3168936-3169016 60 1.95e-05 tacagagaga gagaaaga gagagGGTCC chrX:16655434-16655514 37 1.95e-05 GAGCGAGGGA GAGAAAGA GATGGAGTAT chrII:9072634-9072714 18 1.95e-05 GGCGCTGAGA GAGAAAGA TCCAATGGAT chrI:14533011-14533091 11 1.95e-05 ATGGGACATC GAGAAAGA GTTGGCCATT chrX:8053196-8053276 14 1.95e-05 GGATAAAGGA GAGAAAGA AGGTCTCGGA chrV:12269493-12269573 22 1.95e-05 AGGAGCAGGA GAGAAAGA CACGGGCGAA chrI:14245229-14245309 16 1.95e-05 gagagacgca gagaaaga gagCGGGTGT chrII:9621268-9621348 73 1.95e-05 gggagagaga gagaaaga chrV:14871555-14871635 72 3.72e-05 GAAGATTGGG GAGGAAGA G chrV:11309086-11309166 28 3.72e-05 tgatgatgat gaggaaga tAGAACCCTC chrIV:7098695-7098775 31 3.72e-05 agaagcagta gaggaaga agatgatgat chrX:10410756-10410836 17 3.72e-05 GATAGAGATG GAGGAAGA ATATGTTCAT chrV:10727865-10727945 16 5.86e-05 CATGCCTAGA GAAAAAGA AGAAAGAGGA chrIV:12113150-12113230 7 5.86e-05 AGAAAA GAAAAAGA CAAAAAGGAA chrV:6751834-6751914 33 5.86e-05 AAAAGTAAAG GAAAAAGA AGAAAAAAGC chrX:16534679-16534759 6 5.86e-05 TGCGA GAAAAAGA TATGGGAATT chrIV:11067176-11067256 73 5.86e-05 GTGATGTGGG GAAAAAGA chrIII:7880522-7880602 25 5.86e-05 GAAGGAATAA GAAAAAGA AGAGACAGGT chrX:10949943-10950023 48 5.86e-05 GGCGAAAAAC GAaaaaga aaagcaaaga chrII:9757815-9757895 31 5.86e-05 GAAGGGAAAC GAAAAAGA GAGATTGTGT chrIV:7426212-7426292 60 5.86e-05 Cagtgataga gaaaaaga ataagaagaa chrIII:5835308-5835388 40 7.63e-05 GAGCCagata gagagaga gatagagaga chrIV:5753395-5753475 39 7.63e-05 gagaatgtca gagagaga tagatagaTA chrV:19546836-19546916 38 7.63e-05 AGCCCGTCga gagagaga gagagagGTG chrV:2809652-2809732 54 7.63e-05 CGAAAGGGAT GAGAGAGA TGCGAAGAGT chrIII:10526064-10526144 12 7.63e-05 GAGCTCGAGA GAGAGAGA TGGGCTCCAG chrI:5599525-5599605 41 7.63e-05 GTGTGAAAGT GAGAGAGA GACACAGTGA chrV:8196154-8196234 68 7.63e-05 GACCAAGAGT GAGAGAGA TGAAA chrIII:9083414-9083494 56 9.58e-05 AGAAATGAAA GAAGAAGA AGCTCAAAAG chrIII:5894376-5894456 59 9.58e-05 CTGTACCGGG GAAGAAGA GATGATTTGC chrI:2580184-2580264 61 9.58e-05 aaaaaaaaaa gaagaaga GGGGGTGGAG chrI:14898720-14898800 33 9.58e-05 CCATCAGGAT GAAGAAGA CGAAACCAAC chrIV:15274275-15274355 8 9.58e-05 TGAGGGG GAAGAAGA TGAGATTTTG chrI:5777420-5777500 52 9.58e-05 aaaacgaaaa gaagaaga GCCCCCAGAA chrX:17667452-17667532 29 9.58e-05 GCAAAACGAA GAAGAAGA AGAGCCAATT chrV:8802347-8802427 18 9.58e-05 AAGTGAGAAC GAAGAAGA TACAGATAGT chrV:12234725-12234805 57 9.58e-05 TGAAGATAAA GAAGAAGA AAACGGAATC chrIII:3927620-3927700 73 1.12e-04 GAGGAGCAAG GAGGGAGA chrII:6709168-6709248 51 1.53e-04 gatgacagaa gaaagaga gggaaaaaat chrIV:4506789-4506869 49 1.53e-04 GGCgaaaaaa gagaaaaa cggagtgaaa chrX:5509630-5509710 29 1.53e-04 GTGCGACGCG GAGAAAAA CGAGACATGT chrIII:2170762-2170842 73 1.53e-04 GAAAAAACCC GAGAAAAA chrX:15338344-15338424 68 1.53e-04 ATCGCAACAA GAGAAAAA CGGGG chrII:7722934-7723014 18 1.53e-04 ACATTGATTT GAAAGAGA GATTCAGACG chrIV:607781-607861 16 1.53e-04 ATCACACACA GAGAAAAA GCAAGAGTGA chrX:17670563-17670643 15 1.53e-04 TACACAGATA GAAAGAGA GAAGTTGTTG chrI:6769213-6769293 60 1.53e-04 TGAATGGACT GAGAAAAA CGGATACAGA chrIII:3994602-3994682 16 1.74e-04 GGTCTGCTGG AAGAAAGA TGAAAAATTG chrX:16389441-16389521 60 1.91e-04 GCTGTAATAT GCGAAAGA TCAAGCCGAA chrIV:11489863-11489943 9 2.08e-04 GATGAGAG GAGAAGGA AGGATGCTTA chrII:6236469-6236549 59 2.08e-04 AAACGCGGGG GAGAAGGA TGCGGAAAGC chrI:5015800-5015880 67 2.08e-04 GGTTAGAATA GAGAAGGA TCTCTC chrIII:6158080-6158160 64 2.08e-04 AGCTCTGGga gagaagga tagagagag chrV:6030692-6030772 35 2.46e-04 CGATGGGAAA GAAGGAGA AGATGAAGGG chrX:16392290-16392370 16 2.46e-04 TTGAGCAAAG GAGGAAAA GCAGCACAGT chrX:17043084-17043164 18 2.46e-04 CTCCCGCCGG GAGGAAAA ACCTCTCATT chrX:14684522-14684602 15 2.46e-04 TCAGTCACCG GAGGAAAA GGCGCCTCAG chrIII:3783033-3783113 29 2.69e-04 TGTTTTGTGT GAAAAAAA AGTGAAACGG chrV:281209-281289 1 2.69e-04 . GAAAAAAA TGTCAAGAGC chrI:14862315-14862395 68 3.08e-04 GAATGGGATA GAGAGAAA CATTT chrV:12479141-12479221 8 4.00e-04 CTTCAGT AAGAGAGA ATCCCTACTA chrII:6707696-6707776 35 4.00e-04 GATGAATTGA GAGGAGGA GTGGAGTAGA chrV:11836249-11836329 49 4.00e-04 CTCCGCCTTC GCAAAAGA TTAGGAATCA chrI:10751803-10751883 3 4.00e-04 GT GAGGAGGA GAGGCAAATA chrX:16098245-16098325 1 4.00e-04 . AAGAGAGA AGAGCAGTGA chrV:6204254-6204334 19 4.00e-04 CCTTCCAACG AAGAGAGA TCACTGGTGC chrI:4050746-4050826 55 4.00e-04 TCATCATGAA AAGAGAGA GGATATTGTG chrIII:5563861-5563941 1 4.00e-04 . aagagaga acagaagaag chrI:7383268-7383348 27 4.35e-04 CCGGCAGGGA GCGAGAGA GGAGCCTCAG chrIII:8815854-8815934 50 4.35e-04 GTGTAGCAAT GCGAGAGA GTATGAGCAG chrV:11506486-11506566 7 5.51e-04 TAATCA GAGAAACA AAAGTTCTAA chrI:6879582-6879662 56 5.51e-04 CTACATTTTG GAGAAACA GTTGTTATTA chrIV:1758771-1758851 66 5.51e-04 GGGGGATGTT AAAGAAGA TATTATA chrV:4157495-4157575 21 5.51e-04 ATACTGATAA AAAGAAGA TAAGAAGGGA chrX:14653719-14653799 16 5.51e-04 GATAAAGGAT GAGAAACA CCGTCAGCTG chrI:4840976-4841056 17 5.51e-04 CAAGATTTCG AAAGAAGA ACACGATGAT chrX:5195594-5195674 49 5.51e-04 TCGAAGACGG AAAGAAGA GATCGGTTGC chrX:14731981-14732061 24 5.85e-04 TGCTCCCCGG GCAGAAGA TTTCTGTTTT chrIII:10824360-10824440 47 6.61e-04 GCTCGAAACC GCGGGAGA TGCCAGGAGC chrX:1082083-1082163 12 6.61e-04 TAGATGAAGG GCGGGAGA GGAGTCGCTG chrII:6170395-6170475 35 6.61e-04 AATAAAGTGT GCGGGAGA TAGAGACGTA chrI:14863583-14863663 52 6.61e-04 AGCGGCAGCG GCGGGAGA GACGGGAACC chrX:8724013-8724093 1 6.61e-04 . GAAGAGGA AATAGATAGA chrI:4046759-4046839 70 7.11e-04 CGGGATCCTG GCAAGAGA GCA chrX:3733515-3733595 60 7.11e-04 TGGCGTCCAG GAGGGGGA TCTCGCTGCC chrIV:8533487-8533567 25 7.48e-04 CGGAAAGAAT GAGAAGAA ACATTGTTTG chrI:4030694-4030774 62 7.48e-04 AATAATGGGT GAGAAGAA GCAGGAGCAC chrIII:10248884-10248964 34 7.66e-04 AGGCATCTCA ACGAAAGA CGGGGCGATG chrV:12518870-12518950 71 9.30e-04 CACCAACTGA GAGCAAGA AG chrX:146989-147069 55 9.87e-04 TTTTTTATGC AAAAAAAA GTCGACTTTT chrIV:7723666-7723746 71 1.06e-03 TGTTAAACCA AAGAGAAA TG chrIII:13616967-13617047 21 1.06e-03 ACGGAAATCA AAGAGAAA AGTAGGCTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRAAGA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:11082612-11082692 1.9e-05 54_[+2]_18 chrIV:3168936-3169016 1.9e-05 59_[+2]_13 chrX:16655434-16655514 1.9e-05 36_[+2]_36 chrII:9072634-9072714 1.9e-05 17_[+2]_55 chrI:14533011-14533091 1.9e-05 10_[+2]_62 chrX:8053196-8053276 1.9e-05 13_[+2]_59 chrV:12269493-12269573 1.9e-05 21_[+2]_51 chrI:14245229-14245309 1.9e-05 15_[+2]_57 chrII:9621268-9621348 1.9e-05 72_[+2] chrV:14871555-14871635 3.7e-05 71_[+2]_1 chrV:11309086-11309166 3.7e-05 27_[+2]_45 chrIV:7098695-7098775 3.7e-05 30_[+2]_42 chrX:10410756-10410836 3.7e-05 16_[+2]_56 chrV:10727865-10727945 5.9e-05 15_[+2]_57 chrIV:12113150-12113230 5.9e-05 6_[+2]_66 chrV:6751834-6751914 5.9e-05 32_[+2]_40 chrX:16534679-16534759 5.9e-05 5_[+2]_67 chrIV:11067176-11067256 5.9e-05 72_[+2] chrIII:7880522-7880602 5.9e-05 24_[+2]_48 chrX:10949943-10950023 5.9e-05 47_[+2]_25 chrII:9757815-9757895 5.9e-05 30_[+2]_42 chrIV:7426212-7426292 5.9e-05 59_[+2]_13 chrIII:5835308-5835388 7.6e-05 39_[+2]_33 chrIV:5753395-5753475 7.6e-05 38_[+2]_34 chrV:19546836-19546916 7.6e-05 37_[+2]_35 chrV:2809652-2809732 7.6e-05 53_[+2]_19 chrIII:10526064-10526144 7.6e-05 11_[+2]_61 chrI:5599525-5599605 7.6e-05 40_[+2]_32 chrV:8196154-8196234 7.6e-05 67_[+2]_5 chrIII:9083414-9083494 9.6e-05 55_[+2]_17 chrIII:5894376-5894456 9.6e-05 58_[+2]_14 chrI:2580184-2580264 9.6e-05 60_[+2]_12 chrI:14898720-14898800 9.6e-05 32_[+2]_40 chrIV:15274275-15274355 9.6e-05 7_[+2]_65 chrI:5777420-5777500 9.6e-05 51_[+2]_21 chrX:17667452-17667532 9.6e-05 28_[+2]_44 chrV:8802347-8802427 9.6e-05 17_[+2]_55 chrV:12234725-12234805 9.6e-05 56_[+2]_16 chrIII:3927620-3927700 0.00011 72_[+2] chrII:6709168-6709248 0.00015 50_[+2]_22 chrIV:4506789-4506869 0.00015 48_[+2]_24 chrX:5509630-5509710 0.00015 28_[+2]_44 chrIII:2170762-2170842 0.00015 72_[+2] chrX:15338344-15338424 0.00015 67_[+2]_5 chrII:7722934-7723014 0.00015 17_[+2]_55 chrIV:607781-607861 0.00015 15_[+2]_57 chrX:17670563-17670643 0.00015 14_[+2]_58 chrI:6769213-6769293 0.00015 59_[+2]_13 chrIII:3994602-3994682 0.00017 15_[+2]_57 chrX:16389441-16389521 0.00019 59_[+2]_13 chrIV:11489863-11489943 0.00021 8_[+2]_64 chrII:6236469-6236549 0.00021 58_[+2]_14 chrI:5015800-5015880 0.00021 66_[+2]_6 chrIII:6158080-6158160 0.00021 63_[+2]_9 chrV:6030692-6030772 0.00025 34_[+2]_38 chrX:16392290-16392370 0.00025 15_[+2]_57 chrX:17043084-17043164 0.00025 17_[+2]_55 chrX:14684522-14684602 0.00025 14_[+2]_58 chrIII:3783033-3783113 0.00027 28_[+2]_44 chrV:281209-281289 0.00027 [+2]_72 chrI:14862315-14862395 0.00031 67_[+2]_5 chrV:12479141-12479221 0.0004 7_[+2]_65 chrII:6707696-6707776 0.0004 34_[+2]_38 chrV:11836249-11836329 0.0004 48_[+2]_24 chrI:10751803-10751883 0.0004 2_[+2]_70 chrX:16098245-16098325 0.0004 [+2]_72 chrV:6204254-6204334 0.0004 18_[+2]_54 chrI:4050746-4050826 0.0004 54_[+2]_18 chrIII:5563861-5563941 0.0004 [+2]_72 chrI:7383268-7383348 0.00043 26_[+2]_46 chrIII:8815854-8815934 0.00043 49_[+2]_23 chrV:11506486-11506566 0.00055 6_[+2]_66 chrI:6879582-6879662 0.00055 55_[+2]_17 chrIV:1758771-1758851 0.00055 65_[+2]_7 chrV:4157495-4157575 0.00055 20_[+2]_52 chrX:14653719-14653799 0.00055 15_[+2]_57 chrI:4840976-4841056 0.00055 16_[+2]_56 chrX:5195594-5195674 0.00055 48_[+2]_24 chrX:14731981-14732061 0.00059 23_[+2]_49 chrIII:10824360-10824440 0.00066 46_[+2]_26 chrX:1082083-1082163 0.00066 11_[+2]_61 chrII:6170395-6170475 0.00066 34_[+2]_38 chrI:14863583-14863663 0.00066 51_[+2]_21 chrX:8724013-8724093 0.00066 [+2]_72 chrI:4046759-4046839 0.00071 69_[+2]_3 chrX:3733515-3733595 0.00071 59_[+2]_13 chrIV:8533487-8533567 0.00075 24_[+2]_48 chrI:4030694-4030774 0.00075 61_[+2]_11 chrIII:10248884-10248964 0.00077 33_[+2]_39 chrV:12518870-12518950 0.00093 70_[+2]_2 chrX:146989-147069 0.00099 54_[+2]_18 chrIV:7723666-7723746 0.0011 70_[+2]_2 chrIII:13616967-13617047 0.0011 20_[+2]_52 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRAAGA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GARRAAGA width=8 seqs=93 chrV:11082612-11082692 ( 55) GAGAAAGA 1 chrIV:3168936-3169016 ( 60) GAGAAAGA 1 chrX:16655434-16655514 ( 37) GAGAAAGA 1 chrII:9072634-9072714 ( 18) GAGAAAGA 1 chrI:14533011-14533091 ( 11) GAGAAAGA 1 chrX:8053196-8053276 ( 14) GAGAAAGA 1 chrV:12269493-12269573 ( 22) GAGAAAGA 1 chrI:14245229-14245309 ( 16) GAGAAAGA 1 chrII:9621268-9621348 ( 73) GAGAAAGA 1 chrV:14871555-14871635 ( 72) GAGGAAGA 1 chrV:11309086-11309166 ( 28) GAGGAAGA 1 chrIV:7098695-7098775 ( 31) GAGGAAGA 1 chrX:10410756-10410836 ( 17) GAGGAAGA 1 chrV:10727865-10727945 ( 16) GAAAAAGA 1 chrIV:12113150-12113230 ( 7) GAAAAAGA 1 chrV:6751834-6751914 ( 33) GAAAAAGA 1 chrX:16534679-16534759 ( 6) GAAAAAGA 1 chrIV:11067176-11067256 ( 73) GAAAAAGA 1 chrIII:7880522-7880602 ( 25) GAAAAAGA 1 chrX:10949943-10950023 ( 48) GAAAAAGA 1 chrII:9757815-9757895 ( 31) GAAAAAGA 1 chrIV:7426212-7426292 ( 60) GAAAAAGA 1 chrIII:5835308-5835388 ( 40) GAGAGAGA 1 chrIV:5753395-5753475 ( 39) GAGAGAGA 1 chrV:19546836-19546916 ( 38) GAGAGAGA 1 chrV:2809652-2809732 ( 54) GAGAGAGA 1 chrIII:10526064-10526144 ( 12) GAGAGAGA 1 chrI:5599525-5599605 ( 41) GAGAGAGA 1 chrV:8196154-8196234 ( 68) GAGAGAGA 1 chrIII:9083414-9083494 ( 56) GAAGAAGA 1 chrIII:5894376-5894456 ( 59) GAAGAAGA 1 chrI:2580184-2580264 ( 61) GAAGAAGA 1 chrI:14898720-14898800 ( 33) GAAGAAGA 1 chrIV:15274275-15274355 ( 8) GAAGAAGA 1 chrI:5777420-5777500 ( 52) GAAGAAGA 1 chrX:17667452-17667532 ( 29) GAAGAAGA 1 chrV:8802347-8802427 ( 18) GAAGAAGA 1 chrV:12234725-12234805 ( 57) GAAGAAGA 1 chrIII:3927620-3927700 ( 73) GAGGGAGA 1 chrII:6709168-6709248 ( 51) GAAAGAGA 1 chrIV:4506789-4506869 ( 49) GAGAAAAA 1 chrX:5509630-5509710 ( 29) GAGAAAAA 1 chrIII:2170762-2170842 ( 73) GAGAAAAA 1 chrX:15338344-15338424 ( 68) GAGAAAAA 1 chrII:7722934-7723014 ( 18) GAAAGAGA 1 chrIV:607781-607861 ( 16) GAGAAAAA 1 chrX:17670563-17670643 ( 15) GAAAGAGA 1 chrI:6769213-6769293 ( 60) GAGAAAAA 1 chrIII:3994602-3994682 ( 16) AAGAAAGA 1 chrX:16389441-16389521 ( 60) GCGAAAGA 1 chrIV:11489863-11489943 ( 9) GAGAAGGA 1 chrII:6236469-6236549 ( 59) GAGAAGGA 1 chrI:5015800-5015880 ( 67) GAGAAGGA 1 chrIII:6158080-6158160 ( 64) GAGAAGGA 1 chrV:6030692-6030772 ( 35) GAAGGAGA 1 chrX:16392290-16392370 ( 16) GAGGAAAA 1 chrX:17043084-17043164 ( 18) GAGGAAAA 1 chrX:14684522-14684602 ( 15) GAGGAAAA 1 chrIII:3783033-3783113 ( 29) GAAAAAAA 1 chrV:281209-281289 ( 1) GAAAAAAA 1 chrI:14862315-14862395 ( 68) GAGAGAAA 1 chrV:12479141-12479221 ( 8) AAGAGAGA 1 chrII:6707696-6707776 ( 35) GAGGAGGA 1 chrV:11836249-11836329 ( 49) GCAAAAGA 1 chrI:10751803-10751883 ( 3) GAGGAGGA 1 chrX:16098245-16098325 ( 1) AAGAGAGA 1 chrV:6204254-6204334 ( 19) AAGAGAGA 1 chrI:4050746-4050826 ( 55) AAGAGAGA 1 chrIII:5563861-5563941 ( 1) AAGAGAGA 1 chrI:7383268-7383348 ( 27) GCGAGAGA 1 chrIII:8815854-8815934 ( 50) GCGAGAGA 1 chrV:11506486-11506566 ( 7) GAGAAACA 1 chrI:6879582-6879662 ( 56) GAGAAACA 1 chrIV:1758771-1758851 ( 66) AAAGAAGA 1 chrV:4157495-4157575 ( 21) AAAGAAGA 1 chrX:14653719-14653799 ( 16) GAGAAACA 1 chrI:4840976-4841056 ( 17) AAAGAAGA 1 chrX:5195594-5195674 ( 49) AAAGAAGA 1 chrX:14731981-14732061 ( 24) GCAGAAGA 1 chrIII:10824360-10824440 ( 47) GCGGGAGA 1 chrX:1082083-1082163 ( 12) GCGGGAGA 1 chrII:6170395-6170475 ( 35) GCGGGAGA 1 chrI:14863583-14863663 ( 52) GCGGGAGA 1 chrX:8724013-8724093 ( 1) GAAGAGGA 1 chrI:4046759-4046839 ( 70) GCAAGAGA 1 chrX:3733515-3733595 ( 60) GAGGGGGA 1 chrIV:8533487-8533567 ( 25) GAGAAGAA 1 chrI:4030694-4030774 ( 62) GAGAAGAA 1 chrIII:10248884-10248964 ( 34) ACGAAAGA 1 chrV:12518870-12518950 ( 71) GAGCAAGA 1 chrX:146989-147069 ( 55) AAAAAAAA 1 chrIV:7723666-7723746 ( 71) AAGAGAAA 1 chrIII:13616967-13617047 ( 21) AAGAGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRAAGA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.18043 E= 1.2e-024 -83 -1318 181 -1318 172 -93 -1318 -1318 41 -1318 141 -1318 129 -439 46 -1318 139 -1318 31 -1318 174 -1318 -118 -1318 -55 -281 169 -1318 190 -1318 -1318 -1318 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRAAGA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 93 E= 1.2e-024 0.150538 0.000000 0.849462 0.000000 0.881720 0.118280 0.000000 0.000000 0.354839 0.000000 0.645161 0.000000 0.655914 0.010753 0.333333 0.000000 0.698925 0.000000 0.301075 0.000000 0.892473 0.000000 0.107527 0.000000 0.182796 0.032258 0.784946 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GARRAAGA MEME-2 regular expression -------------------------------------------------------------------------------- GA[GA][AG][AG]AGA -------------------------------------------------------------------------------- Time 12.87 secs. ******************************************************************************** ******************************************************************************** MOTIF HTCWTYTY MEME-3 width = 8 sites = 67 llr = 484 E-value = 3.8e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif HTCWTYTY MEME-3 Description -------------------------------------------------------------------------------- Simplified A 2::4:::: pos.-specific C 3:a::624 probability G :::::::1 matrix T 4a:6a486 bits 2.1 * 1.9 ** * 1.7 ** * 1.5 ** * Relative 1.3 ** * * Entropy 1.1 ** *** (10.4 bits) 0.9 ****** 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTCTTCTT consensus C A T C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HTCWTYTY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:10979779-10979859 46 1.73e-05 GCTGTGCTTC TTCTTCTT CAACTTTCTC chrII:13789944-13790024 38 1.73e-05 ATCAAAAAtc ttcttctt cttcctcctc chrX:5592687-5592767 50 1.73e-05 CGCCTCCGAG TTCTTCTT ACACATATGT chrV:12479141-12479221 42 1.73e-05 TCTTTTTTTT TTCTTCTT TGGCATCCTT chrIV:11649180-11649260 61 1.73e-05 TTCTTTCATC TTCTTCTT ATTTTTCTGC chrX:5509630-5509710 64 1.73e-05 GGTCCTCTTC TTCTTCTT CCTGCTCTC chrIII:2170762-2170842 1 1.73e-05 . TTCTTCTT CTTCATTTTT chrIII:4113764-4113844 6 1.73e-05 TGCTC TTCTTCTT CATTCCCGCC chrIII:5129425-5129505 39 1.73e-05 tacctcctcc ttcttctt tctctcGTTG chrV:13084091-13084171 35 1.73e-05 AAAATTTTGA TTCTTCTT TGTTTTTTCT chrX:15575572-15575652 24 3.21e-05 CCTTCTCTTC CTCTTCTT CATCCAGCAG chrI:10105493-10105573 39 8.46e-05 TCCTTTCCTT TTCTTTTT TGCACCGTTT chrIII:8287695-8287775 3 8.46e-05 CC TTCTTTTT CATTCGACAT chrV:14800443-14800523 15 8.46e-05 GTAGTGTTGT TTCTTTTT CAACACAACA chrIV:14606604-14606684 9 8.46e-05 CTCGCTCC TTCTTTTT GTCGTGGCTC chrIV:8605403-8605483 45 8.46e-05 TCTCTCTGTT TTCTTTTT CATTCACAAT chrX:16392290-16392370 68 8.46e-05 CATCTTGTGC TTCTTCTC GGCGA chrX:7523937-7524017 71 8.46e-05 TCTTTCTTTC TTCTTTTT TC chrIV:3168936-3169016 26 1.30e-04 CTCCGTCTTC CTCATCTT CTCACACGGG chrV:14909481-14909561 52 1.30e-04 ACGAGTCTTG CTCTTTTT GCTTCTTAAA chrI:6882066-6882146 41 1.30e-04 CGCGCGGGAG CTCTTTTT AAGTCTGCGT chrIII:3601372-3601452 18 1.30e-04 actttttcca ctcttctC ATCCAGGCTT chrIII:10816134-10816214 66 1.30e-04 TCTTTAGGGA CTCTTTTT CCCTATC chrX:8276411-8276491 28 1.82e-04 ATTCTTAAAC TTCTTTTC ATTTCCCTCT chrV:5303096-5303176 18 1.82e-04 GTTCTCAATC TTCATCTC TCTGTTTCTC chrV:12477324-12477404 9 1.82e-04 AATCTTCA TTCATTTT CTGCTGCTCC chrX:17458987-17459067 53 2.00e-04 AGTTTTGCCC ATCTTCTT GGAAACCTCC chrI:7381104-7381184 20 2.45e-04 TTGTATCTCT CTCATCTC TTCCTGGAAG chrIV:6393402-6393482 49 2.45e-04 CTCTTCTGTG CTCATTTT TCTCTGTCTC chrIII:4731474-4731554 54 2.45e-04 AAAACCAGCT CTCATCTC ACGTGTAACT chrIII:7217230-7217310 39 2.45e-04 TCTCGCATCT CTCATCTC CCAGTAGTGT chrV:10146960-10147040 45 2.45e-04 ACAACACATG CTCATTTT TTCTTCTCTG chrX:10068671-10068751 72 2.45e-04 GAGAACCTTG CTCATCTC C chrIII:13616967-13617047 57 2.45e-04 CATCTTCTGC CTCTTTTC ATCTTTCTCT chrV:2803467-2803547 26 2.45e-04 TGTCTGAACT CTCATCTC ATCCTGCCCG chrX:17670563-17670643 72 2.45e-04 AATCCTCCCA CTCATTTT C chrX:13637643-13637723 34 2.62e-04 GGAATAAGTC TTCATTTC CACGGGAGCC chrV:5296124-5296204 38 2.62e-04 GTGGTGCATT TTCATTTC GGCCAGTTGG chrV:11506486-11506566 66 3.15e-04 GAAACTCGCT ATCTTTTT TTTTTCA chrX:15019463-15019543 3 3.15e-04 TT ATCATCTT CCCCTTCTTC chrV:9958766-9958846 15 3.15e-04 AGCTCTCTAG ATCTTCTC TCGATCTTAA chrX:146989-147069 41 3.15e-04 TTTTTTTTGC ATCTTTTT TTATGCAAAA chrV:11140490-11140570 47 3.30e-04 AACAATTTCC CTCATTTC TTCCCTCTTT chrI:435526-435606 50 3.98e-04 GGGCGCCGCC ATCATTTT Cctctctttc chrIII:1678852-1678932 56 3.98e-04 TCGGTAAATC ATCATCTC TGATCCGAAG chrI:7040901-7040981 44 3.98e-04 GCAGAGTATC ATCATCTC ATATATTTTA chrX:15338344-15338424 23 3.98e-04 TACACCCCCG ATCATTTT GTCACTCTCA chrX:7715638-7715718 19 3.98e-04 tcttccgtcG ATCATCTC ATTGTCTAAT chrX:10176451-10176531 19 3.98e-04 ATCAACCGAA ATCATCTC TTATCCAATG chrV:9112052-9112132 8 4.11e-04 CCATCAC CTCTTCCT TCGCCTCTCC chrIII:6138658-6138738 17 4.56e-04 CTGTCTCCGC TTCTTCCC GAGACTTCCC chrI:4046759-4046839 19 4.56e-04 ctctcaatct ttctttct atctctcttt chrII:7635408-7635488 5 4.56e-04 tcAA TTCATCCT TTATTTGGCG chrX:9161437-9161517 72 5.12e-04 CGCAGTACAT CTCATCCT T chrII:4184127-4184207 72 5.57e-04 ATACTCTCTA TTCATCCC G chrI:10074865-10074945 8 5.88e-04 ATCTCGA TTCTTCTG ATCTTCCGCC chrI:14862315-14862395 35 6.27e-04 CAGAGATAGC CTCATCCC ACTCAATTGA chrX:10618850-10618930 47 6.27e-04 CCCGTCGCTG CTCTTTCC ATCACCCCCC chrX:14054227-14054307 30 6.55e-04 ATACCGCTTC TTCATTCC CCTCCTGCGC chrII:10204844-10204924 70 7.36e-04 TCTCTCTCTG ATCTTTCT TGA chrIII:822637-822717 14 7.36e-04 ACTGTTTTAT ATCTTCCC AAATTTTCCC chrII:7722934-7723014 73 7.36e-04 CCGAGGAAGC TTCATCTG chrV:6768646-6768726 3 7.36e-04 GC ATCTTCCC GAATGTAATA chrX:2950388-2950468 26 7.36e-04 ATTCACCACT ATCTTTCT CGTGTTCCAT chrI:7028329-7028409 34 7.78e-04 AAGCGCTGAG CTCTTTTG TTGTGAATAC chrX:7573686-7573766 59 7.78e-04 ATCTGATGTG CTCTTTTG AAATGCTCCC chrI:4936286-4936366 51 8.42e-04 ttggttttcg ttcatttg tcctccgtcc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HTCWTYTY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:10979779-10979859 1.7e-05 45_[+3]_27 chrII:13789944-13790024 1.7e-05 37_[+3]_35 chrX:5592687-5592767 1.7e-05 49_[+3]_23 chrV:12479141-12479221 1.7e-05 41_[+3]_31 chrIV:11649180-11649260 1.7e-05 60_[+3]_12 chrX:5509630-5509710 1.7e-05 63_[+3]_9 chrIII:2170762-2170842 1.7e-05 [+3]_72 chrIII:4113764-4113844 1.7e-05 5_[+3]_67 chrIII:5129425-5129505 1.7e-05 38_[+3]_34 chrV:13084091-13084171 1.7e-05 34_[+3]_38 chrX:15575572-15575652 3.2e-05 23_[+3]_49 chrI:10105493-10105573 8.5e-05 38_[+3]_34 chrIII:8287695-8287775 8.5e-05 2_[+3]_70 chrV:14800443-14800523 8.5e-05 14_[+3]_58 chrIV:14606604-14606684 8.5e-05 8_[+3]_64 chrIV:8605403-8605483 8.5e-05 44_[+3]_28 chrX:16392290-16392370 8.5e-05 67_[+3]_5 chrX:7523937-7524017 8.5e-05 70_[+3]_2 chrIV:3168936-3169016 0.00013 25_[+3]_47 chrV:14909481-14909561 0.00013 51_[+3]_21 chrI:6882066-6882146 0.00013 40_[+3]_32 chrIII:3601372-3601452 0.00013 17_[+3]_55 chrIII:10816134-10816214 0.00013 65_[+3]_7 chrX:8276411-8276491 0.00018 27_[+3]_45 chrV:5303096-5303176 0.00018 17_[+3]_55 chrV:12477324-12477404 0.00018 8_[+3]_64 chrX:17458987-17459067 0.0002 52_[+3]_20 chrI:7381104-7381184 0.00024 19_[+3]_53 chrIV:6393402-6393482 0.00024 48_[+3]_24 chrIII:4731474-4731554 0.00024 53_[+3]_19 chrIII:7217230-7217310 0.00024 38_[+3]_34 chrV:10146960-10147040 0.00024 44_[+3]_28 chrX:10068671-10068751 0.00024 71_[+3]_1 chrIII:13616967-13617047 0.00024 56_[+3]_16 chrV:2803467-2803547 0.00024 25_[+3]_47 chrX:17670563-17670643 0.00024 71_[+3]_1 chrX:13637643-13637723 0.00026 33_[+3]_39 chrV:5296124-5296204 0.00026 37_[+3]_35 chrV:11506486-11506566 0.00032 65_[+3]_7 chrX:15019463-15019543 0.00032 2_[+3]_70 chrV:9958766-9958846 0.00032 14_[+3]_58 chrX:146989-147069 0.00032 40_[+3]_32 chrV:11140490-11140570 0.00033 46_[+3]_26 chrI:435526-435606 0.0004 49_[+3]_23 chrIII:1678852-1678932 0.0004 55_[+3]_17 chrI:7040901-7040981 0.0004 43_[+3]_29 chrX:15338344-15338424 0.0004 22_[+3]_50 chrX:7715638-7715718 0.0004 18_[+3]_54 chrX:10176451-10176531 0.0004 18_[+3]_54 chrV:9112052-9112132 0.00041 7_[+3]_65 chrIII:6138658-6138738 0.00046 16_[+3]_56 chrI:4046759-4046839 0.00046 18_[+3]_54 chrII:7635408-7635488 0.00046 4_[+3]_68 chrX:9161437-9161517 0.00051 71_[+3]_1 chrII:4184127-4184207 0.00056 71_[+3]_1 chrI:10074865-10074945 0.00059 7_[+3]_65 chrI:14862315-14862395 0.00063 34_[+3]_38 chrX:10618850-10618930 0.00063 46_[+3]_26 chrX:14054227-14054307 0.00066 29_[+3]_43 chrII:10204844-10204924 0.00074 69_[+3]_3 chrIII:822637-822717 0.00074 13_[+3]_59 chrII:7722934-7723014 0.00074 72_[+3] chrV:6768646-6768726 0.00074 2_[+3]_70 chrX:2950388-2950468 0.00074 25_[+3]_47 chrI:7028329-7028409 0.00078 33_[+3]_39 chrX:7573686-7573766 0.00078 58_[+3]_14 chrI:4936286-4936366 0.00084 50_[+3]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HTCWTYTY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF HTCWTYTY width=8 seqs=67 chrIV:10979779-10979859 ( 46) TTCTTCTT 1 chrII:13789944-13790024 ( 38) TTCTTCTT 1 chrX:5592687-5592767 ( 50) TTCTTCTT 1 chrV:12479141-12479221 ( 42) TTCTTCTT 1 chrIV:11649180-11649260 ( 61) TTCTTCTT 1 chrX:5509630-5509710 ( 64) TTCTTCTT 1 chrIII:2170762-2170842 ( 1) TTCTTCTT 1 chrIII:4113764-4113844 ( 6) TTCTTCTT 1 chrIII:5129425-5129505 ( 39) TTCTTCTT 1 chrV:13084091-13084171 ( 35) TTCTTCTT 1 chrX:15575572-15575652 ( 24) CTCTTCTT 1 chrI:10105493-10105573 ( 39) TTCTTTTT 1 chrIII:8287695-8287775 ( 3) TTCTTTTT 1 chrV:14800443-14800523 ( 15) TTCTTTTT 1 chrIV:14606604-14606684 ( 9) TTCTTTTT 1 chrIV:8605403-8605483 ( 45) TTCTTTTT 1 chrX:16392290-16392370 ( 68) TTCTTCTC 1 chrX:7523937-7524017 ( 71) TTCTTTTT 1 chrIV:3168936-3169016 ( 26) CTCATCTT 1 chrV:14909481-14909561 ( 52) CTCTTTTT 1 chrI:6882066-6882146 ( 41) CTCTTTTT 1 chrIII:3601372-3601452 ( 18) CTCTTCTC 1 chrIII:10816134-10816214 ( 66) CTCTTTTT 1 chrX:8276411-8276491 ( 28) TTCTTTTC 1 chrV:5303096-5303176 ( 18) TTCATCTC 1 chrV:12477324-12477404 ( 9) TTCATTTT 1 chrX:17458987-17459067 ( 53) ATCTTCTT 1 chrI:7381104-7381184 ( 20) CTCATCTC 1 chrIV:6393402-6393482 ( 49) CTCATTTT 1 chrIII:4731474-4731554 ( 54) CTCATCTC 1 chrIII:7217230-7217310 ( 39) CTCATCTC 1 chrV:10146960-10147040 ( 45) CTCATTTT 1 chrX:10068671-10068751 ( 72) CTCATCTC 1 chrIII:13616967-13617047 ( 57) CTCTTTTC 1 chrV:2803467-2803547 ( 26) CTCATCTC 1 chrX:17670563-17670643 ( 72) CTCATTTT 1 chrX:13637643-13637723 ( 34) TTCATTTC 1 chrV:5296124-5296204 ( 38) TTCATTTC 1 chrV:11506486-11506566 ( 66) ATCTTTTT 1 chrX:15019463-15019543 ( 3) ATCATCTT 1 chrV:9958766-9958846 ( 15) ATCTTCTC 1 chrX:146989-147069 ( 41) ATCTTTTT 1 chrV:11140490-11140570 ( 47) CTCATTTC 1 chrI:435526-435606 ( 50) ATCATTTT 1 chrIII:1678852-1678932 ( 56) ATCATCTC 1 chrI:7040901-7040981 ( 44) ATCATCTC 1 chrX:15338344-15338424 ( 23) ATCATTTT 1 chrX:7715638-7715718 ( 19) ATCATCTC 1 chrX:10176451-10176531 ( 19) ATCATCTC 1 chrV:9112052-9112132 ( 8) CTCTTCCT 1 chrIII:6138658-6138738 ( 17) TTCTTCCC 1 chrI:4046759-4046839 ( 19) TTCTTTCT 1 chrII:7635408-7635488 ( 5) TTCATCCT 1 chrX:9161437-9161517 ( 72) CTCATCCT 1 chrII:4184127-4184207 ( 72) TTCATCCC 1 chrI:10074865-10074945 ( 8) TTCTTCTG 1 chrI:14862315-14862395 ( 35) CTCATCCC 1 chrX:10618850-10618930 ( 47) CTCTTTCC 1 chrX:14054227-14054307 ( 30) TTCATTCC 1 chrII:10204844-10204924 ( 70) ATCTTTCT 1 chrIII:822637-822717 ( 14) ATCTTCCC 1 chrII:7722934-7723014 ( 73) TTCATCTG 1 chrV:6768646-6768726 ( 3) ATCTTCCC 1 chrX:2950388-2950468 ( 26) ATCTTTCT 1 chrI:7028329-7028409 ( 34) CTCTTTTG 1 chrX:7573686-7573766 ( 59) CTCTTTTG 1 chrI:4936286-4936366 ( 51) TTCATTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HTCWTYTY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.44204 E= 3.8e-004 -26 54 -1271 76 -1271 -1271 -1271 192 -1271 215 -1271 -1271 64 -1271 -1271 114 -1271 -1271 -1271 192 -1271 129 -1271 76 -1271 -22 -1271 161 -1271 73 -170 106 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HTCWTYTY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 67 E= 3.8e-004 0.223881 0.328358 0.000000 0.447761 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.417910 0.000000 0.000000 0.582090 0.000000 0.000000 0.000000 1.000000 0.000000 0.552239 0.000000 0.447761 0.000000 0.194030 0.000000 0.805970 0.000000 0.373134 0.074627 0.552239 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif HTCWTYTY MEME-3 regular expression -------------------------------------------------------------------------------- [TCA]TC[TA]T[CT]T[TC] -------------------------------------------------------------------------------- Time 16.27 secs. ******************************************************************************** ******************************************************************************** MOTIF CARCTGTY MEME-4 width = 8 sites = 27 llr = 245 E-value = 5.1e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CARCTGTY MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a4::::: pos.-specific C a::a::33 probability G ::6::a:: matrix T ::1:a:77 bits 2.1 * * * 1.9 ** *** 1.7 ** *** 1.5 ** *** Relative 1.3 ** *** Entropy 1.1 ** ***** (13.1 bits) 0.9 ** ***** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CAGCTGTT consensus A CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCTGTY MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:10074865-10074945 38 1.48e-05 CATCTGACAT CAGCTGTT TGTTGTCTTC chrX:4266383-4266463 62 1.48e-05 CAAGAAAGTG CAGCTGTT TGCATACACA chrX:2189007-2189087 72 1.48e-05 AGTGAGCAAA CAGCTGTT T chrX:15338344-15338424 6 1.48e-05 CCTAA CAGCTGTT ACACCCCCGA chrX:10068671-10068751 39 1.48e-05 TGTTTGTTGT CAGCTGTT TTCCGGTGAA chrI:3988738-3988818 18 1.48e-05 TGATGGCACG CAGCTGTT CCAAAGATGT chrX:16392290-16392370 37 1.48e-05 GCACAGTGGG CAGCTGTT CGTCGCAATG chrIII:822637-822717 2 3.11e-05 C CAACTGTT TTATATCTTC chrI:7028329-7028409 6 3.11e-05 GTAGC CAACTGTT GCTCTTCGCA chrI:5777420-5777500 5 3.11e-05 ACAA CAACTGTT ATTCCCATTG chrIII:4113764-4113844 64 3.11e-05 TCGAATGAGC CAACTGTT TTTGTTACA chrX:9161437-9161517 28 3.11e-05 AACGAGTTGA CAACTGTT GTTACTCTCT chrI:5589616-5589696 1 4.38e-05 . CAGCTGTC TCTCTATGTC chrIII:9457520-9457600 29 4.38e-05 TTCTCTCTGT CAGCTGTC TCCTCTTCGC chrI:6879582-6879662 31 4.38e-05 TATTACGACA CAGCTGTC AATCAGTCTA chrV:281209-281289 22 4.38e-05 CAAGAGCACA CAGCTGTC GGATGTCACA chrX:14653719-14653799 28 5.65e-05 GAAACACCGT CAGCTGCT TACCCTCGAA chrV:6342657-6342737 70 5.65e-05 CAGAGCAAAA CAGCTGCT CGA chrI:2591613-2591693 6 7.04e-05 GTGAA CAACTGTC CCAAGTGCTT chrV:284960-285040 42 7.04e-05 GGGAAGGAGC CAACTGTC GTAGGTTGCC chrIV:9538410-9538490 43 8.43e-05 TGATGATGAA CAACTGCT AACTGACAAA chrII:4184127-4184207 13 8.43e-05 CCATCAGAAA CAACTGCT CCATTTCCCT chrX:16525796-16525876 58 9.52e-05 GAATGTGCAA CAGCTGCC TGCCCCCCCC chrI:14533011-14533091 38 9.52e-05 TGGCCAGTAG CAGCTGCC ACCTTCTCTC chrX:15019463-15019543 38 1.07e-04 CCTCTGCTCA CAACTGCC TCAAATACTC chrIII:6138658-6138738 57 1.23e-04 GTCGTCTTCT CATCTGTT TCGCCCCCCG chrV:10146960-10147040 22 1.23e-04 TGTGAGTTGC CATCTGTT ATGTAACAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCTGTY MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:10074865-10074945 1.5e-05 37_[+4]_35 chrX:4266383-4266463 1.5e-05 61_[+4]_11 chrX:2189007-2189087 1.5e-05 71_[+4]_1 chrX:15338344-15338424 1.5e-05 5_[+4]_67 chrX:10068671-10068751 1.5e-05 38_[+4]_34 chrI:3988738-3988818 1.5e-05 17_[+4]_55 chrX:16392290-16392370 1.5e-05 36_[+4]_36 chrIII:822637-822717 3.1e-05 1_[+4]_71 chrI:7028329-7028409 3.1e-05 5_[+4]_67 chrI:5777420-5777500 3.1e-05 4_[+4]_68 chrIII:4113764-4113844 3.1e-05 63_[+4]_9 chrX:9161437-9161517 3.1e-05 27_[+4]_45 chrI:5589616-5589696 4.4e-05 [+4]_72 chrIII:9457520-9457600 4.4e-05 28_[+4]_44 chrI:6879582-6879662 4.4e-05 30_[+4]_42 chrV:281209-281289 4.4e-05 21_[+4]_51 chrX:14653719-14653799 5.6e-05 27_[+4]_45 chrV:6342657-6342737 5.6e-05 69_[+4]_3 chrI:2591613-2591693 7e-05 5_[+4]_67 chrV:284960-285040 7e-05 41_[+4]_31 chrIV:9538410-9538490 8.4e-05 42_[+4]_30 chrII:4184127-4184207 8.4e-05 12_[+4]_60 chrX:16525796-16525876 9.5e-05 57_[+4]_15 chrI:14533011-14533091 9.5e-05 37_[+4]_35 chrX:15019463-15019543 0.00011 37_[+4]_35 chrIII:6138658-6138738 0.00012 56_[+4]_16 chrV:10146960-10147040 0.00012 21_[+4]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCTGTY MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CARCTGTY width=8 seqs=27 chrI:10074865-10074945 ( 38) CAGCTGTT 1 chrX:4266383-4266463 ( 62) CAGCTGTT 1 chrX:2189007-2189087 ( 72) CAGCTGTT 1 chrX:15338344-15338424 ( 6) CAGCTGTT 1 chrX:10068671-10068751 ( 39) CAGCTGTT 1 chrI:3988738-3988818 ( 18) CAGCTGTT 1 chrX:16392290-16392370 ( 37) CAGCTGTT 1 chrIII:822637-822717 ( 2) CAACTGTT 1 chrI:7028329-7028409 ( 6) CAACTGTT 1 chrI:5777420-5777500 ( 5) CAACTGTT 1 chrIII:4113764-4113844 ( 64) CAACTGTT 1 chrX:9161437-9161517 ( 28) CAACTGTT 1 chrI:5589616-5589696 ( 1) CAGCTGTC 1 chrIII:9457520-9457600 ( 29) CAGCTGTC 1 chrI:6879582-6879662 ( 31) CAGCTGTC 1 chrV:281209-281289 ( 22) CAGCTGTC 1 chrX:14653719-14653799 ( 28) CAGCTGCT 1 chrV:6342657-6342737 ( 70) CAGCTGCT 1 chrI:2591613-2591693 ( 6) CAACTGTC 1 chrV:284960-285040 ( 42) CAACTGTC 1 chrIV:9538410-9538490 ( 43) CAACTGCT 1 chrII:4184127-4184207 ( 13) CAACTGCT 1 chrX:16525796-16525876 ( 58) CAGCTGCC 1 chrI:14533011-14533091 ( 38) CAGCTGCC 1 chrX:15019463-15019543 ( 38) CAACTGCC 1 chrIII:6138658-6138738 ( 57) CATCTGTT 1 chrV:10146960-10147040 ( 22) CATCTGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCTGTY MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.594 E= 5.1e-005 -1140 215 -1140 -1140 190 -1140 -1140 -1140 47 -1140 119 -183 -1140 215 -1140 -1140 -1140 -1140 -1140 192 -1140 -1140 204 -1140 -1140 20 -1140 149 -1140 56 -1140 134 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCTGTY MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 27 E= 5.1e-005 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.370370 0.000000 0.555556 0.074074 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.259259 0.000000 0.740741 0.000000 0.333333 0.000000 0.666667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCTGTY MEME-4 regular expression -------------------------------------------------------------------------------- CA[GA]CTG[TC][TC] -------------------------------------------------------------------------------- Time 19.58 secs. ******************************************************************************** ******************************************************************************** MOTIF CYCBCGGG MEME-5 width = 8 sites = 23 llr = 205 E-value = 4.6e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CYCBCGGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a5a3a3:: probability G :1:4:7aa matrix T :4:3:::: bits 2.1 * * * ** 1.9 * * * ** 1.7 * * * ** 1.5 * * * ** Relative 1.3 * * **** Entropy 1.1 * * **** (12.9 bits) 0.9 * * **** 0.6 *** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCCGCGGG consensus T T C sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCBCGGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:11836249-11836329 5 9.10e-06 TCTT CCCGCGGG GACCAAACAA chrX:6410507-6410587 39 9.10e-06 CCTGGGGCTT CCCGCGGG CAGTCTGCGT chrX:8053196-8053276 45 9.10e-06 GGAGCGCGCC CCCGCGGG AGTCCAGAGC chrX:14292812-14292892 28 9.10e-06 ttccttcttG CCCGCGGG AAGCAAGAAG chrI:435526-435606 35 3.81e-05 CTGACGAGGG CCCCCGGG CGCCGCCATC chrI:14628091-14628171 31 3.81e-05 GCTCAGTGAG CCCTCGGG AGCCTATTGG chrIII:8815854-8815934 12 3.81e-05 AGTCGAAGAG CCCTCGGG AAGAGAGCCC chrX:3733515-3733595 30 3.81e-05 CAACAAACAT CCCCCGGG ATCCCGCGTC chrII:10204844-10204924 28 5.95e-05 CTGCTGAGAG CTCTCGGG CTCTCTCAGA chrIII:5564918-5564998 13 5.95e-05 CTCTCTCTAT CTCTCGGG CTCCCGAGGG chrI:4050746-4050826 3 5.95e-05 AT CTCTCGGG GAAAGGGACC chrIV:7098695-7098775 53 5.95e-05 gatgatgaag CTCCCGGG AGGATCTTTA chrI:14917510-14917590 40 5.95e-05 CCAGGAGATG CTCCCGGG ATGTGCCATC chrI:14245229-14245309 52 5.95e-05 GTAAACGGGG CTCCCGGG AAGATCACGA chrIV:8850925-8851005 71 5.95e-05 GCTCCCCCGG CTCTCGGG AG chrIII:4113764-4113844 18 6.79e-05 CTTCTTCATT CCCGCCGG GAAACACGGA chrX:17043084-17043164 10 6.79e-05 CTCCCCTCT CCCGCCGG GAGGAAAAAC chrI:6882066-6882146 31 8.76e-05 TTACACCGTG CGCGCGGG AGCTCTTTTT chrV:12518870-12518950 42 8.76e-05 TTTTCATTGT CTCGCCGG GACAACACGT chrV:20793945-20794025 57 8.76e-05 GCGGTGTGCG CGCGCGGG AGCGCGCAGC chrX:5209647-5209727 8 1.05e-04 CCGGGGG CCCTCCGG GGGTAGTGAG chrX:14731981-14732061 16 1.44e-04 TGATATCTTG CTCCCCGG GCAGAAGATT chrIII:10817184-10817264 22 1.53e-04 GACGACATCG CGCGCCGG GATCCTGTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCBCGGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:11836249-11836329 9.1e-06 4_[+5]_68 chrX:6410507-6410587 9.1e-06 38_[+5]_34 chrX:8053196-8053276 9.1e-06 44_[+5]_28 chrX:14292812-14292892 9.1e-06 27_[+5]_45 chrI:435526-435606 3.8e-05 34_[+5]_38 chrI:14628091-14628171 3.8e-05 30_[+5]_42 chrIII:8815854-8815934 3.8e-05 11_[+5]_61 chrX:3733515-3733595 3.8e-05 29_[+5]_43 chrII:10204844-10204924 5.9e-05 27_[+5]_45 chrIII:5564918-5564998 5.9e-05 12_[+5]_60 chrI:4050746-4050826 5.9e-05 2_[+5]_70 chrIV:7098695-7098775 5.9e-05 52_[+5]_20 chrI:14917510-14917590 5.9e-05 39_[+5]_33 chrI:14245229-14245309 5.9e-05 51_[+5]_21 chrIV:8850925-8851005 5.9e-05 70_[+5]_2 chrIII:4113764-4113844 6.8e-05 17_[+5]_55 chrX:17043084-17043164 6.8e-05 9_[+5]_63 chrI:6882066-6882146 8.8e-05 30_[+5]_42 chrV:12518870-12518950 8.8e-05 41_[+5]_31 chrV:20793945-20794025 8.8e-05 56_[+5]_16 chrX:5209647-5209727 0.0001 7_[+5]_65 chrX:14731981-14732061 0.00014 15_[+5]_57 chrIII:10817184-10817264 0.00015 21_[+5]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCBCGGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CYCBCGGG width=8 seqs=23 chrV:11836249-11836329 ( 5) CCCGCGGG 1 chrX:6410507-6410587 ( 39) CCCGCGGG 1 chrX:8053196-8053276 ( 45) CCCGCGGG 1 chrX:14292812-14292892 ( 28) CCCGCGGG 1 chrI:435526-435606 ( 35) CCCCCGGG 1 chrI:14628091-14628171 ( 31) CCCTCGGG 1 chrIII:8815854-8815934 ( 12) CCCTCGGG 1 chrX:3733515-3733595 ( 30) CCCCCGGG 1 chrII:10204844-10204924 ( 28) CTCTCGGG 1 chrIII:5564918-5564998 ( 13) CTCTCGGG 1 chrI:4050746-4050826 ( 3) CTCTCGGG 1 chrIV:7098695-7098775 ( 53) CTCCCGGG 1 chrI:14917510-14917590 ( 40) CTCCCGGG 1 chrI:14245229-14245309 ( 52) CTCCCGGG 1 chrIV:8850925-8851005 ( 71) CTCTCGGG 1 chrIII:4113764-4113844 ( 18) CCCGCCGG 1 chrX:17043084-17043164 ( 10) CCCGCCGG 1 chrI:6882066-6882146 ( 31) CGCGCGGG 1 chrV:12518870-12518950 ( 42) CTCGCCGG 1 chrV:20793945-20794025 ( 57) CGCGCGGG 1 chrX:5209647-5209727 ( 8) CCCTCCGG 1 chrX:14731981-14732061 ( 16) CTCCCCGG 1 chrIII:10817184-10817264 ( 22) CGCGCCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCBCGGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.1915 E= 4.6e+000 -1117 215 -1117 -1117 -1117 108 -90 57 -1117 215 -1117 -1117 -1117 21 84 21 -1117 215 -1117 -1117 -1117 21 161 -1117 -1117 -1117 204 -1117 -1117 -1117 204 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCBCGGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 4.6e+000 0.000000 1.000000 0.000000 0.000000 0.000000 0.478261 0.130435 0.391304 0.000000 1.000000 0.000000 0.000000 0.000000 0.260870 0.434783 0.304348 0.000000 1.000000 0.000000 0.000000 0.000000 0.260870 0.739130 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CYCBCGGG MEME-5 regular expression -------------------------------------------------------------------------------- C[CT]C[GTC]C[GC]GG -------------------------------------------------------------------------------- Time 22.83 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:146989-147069 1.92e-04 11_[+1(1.48e-05)]_61 chrX:10410756-10410836 7.82e-02 16_[+2(3.72e-05)]_56 chrIV:7426212-7426292 2.18e-02 59_[+2(5.86e-05)]_4_[+2(9.58e-05)]_\ 1 chrII:9621268-9621348 7.40e-02 64_[+2(7.63e-05)]_[+2(1.95e-05)] chrV:11307929-11308009 4.82e-01 80 chrI:7385306-7385386 1.89e-02 42_[+3(3.21e-05)]_30 chrIV:8850925-8851005 3.83e-02 70_[+5(5.95e-05)]_2 chrX:8986627-8986707 6.57e-01 80 chrII:8844893-8844973 9.99e-01 80 chrI:6769213-6769293 5.29e-02 80 chrIII:10816134-10816214 5.23e-03 52_[+1(6.96e-05)]_20 chrI:14245229-14245309 1.90e-03 3_[+2(7.63e-05)]_4_[+2(1.95e-05)]_\ 28_[+5(5.95e-05)]_21 chrX:10176451-10176531 5.00e-02 80 chrV:12234725-12234805 5.08e-02 56_[+2(9.58e-05)]_16 chrV:8802347-8802427 4.30e-01 17_[+2(9.58e-05)]_55 chrII:4184127-4184207 1.39e-03 12_[+4(8.43e-05)]_60 chrV:8196154-8196234 3.60e-01 67_[+2(7.63e-05)]_5 chrX:14292812-14292892 2.28e-06 9_[+3(1.73e-05)]_10_[+5(9.10e-06)]_\ 45 chrV:11074586-11074666 3.06e-01 80 chrX:17670563-17670643 2.21e-02 80 chrIV:607781-607861 1.05e-01 80 chrII:9757815-9757895 2.88e-01 10_[+2(9.58e-05)]_12_[+2(5.86e-05)]_\ 42 chrIII:3927620-3927700 5.61e-02 80 chrX:5195594-5195674 1.24e-01 80 chrV:12269493-12269573 5.53e-04 21_[+2(1.95e-05)]_43_[+1(4.94e-05)] chrX:14054227-14054307 1.24e-02 80 chrV:2803467-2803547 3.44e-03 4_[+1(6.96e-05)]_68 chrX:6591861-6591941 6.23e-01 80 chrX:2950388-2950468 7.27e-03 71_[+3(1.73e-05)]_1 chrX:10949943-10950023 2.03e-01 47_[+2(5.86e-05)]_25 chrI:9188025-9188105 2.50e-03 68_[+1(1.48e-05)]_4 chrI:14917510-14917590 6.58e-03 39_[+5(5.95e-05)]_33 chrI:4035482-4035562 6.90e-01 80 chrX:9832328-9832408 8.93e-01 80 chrIII:6158080-6158160 2.08e-01 80 chrIII:7880522-7880602 1.66e-01 24_[+2(5.86e-05)]_48 chrII:6303351-6303431 1.78e-01 80 chrX:3733515-3733595 3.50e-03 29_[+5(3.81e-05)]_43 chrX:8053196-8053276 1.95e-03 13_[+2(1.95e-05)]_23_[+5(9.10e-06)]_\ 28 chrIV:9080371-9080451 6.32e-01 80 chrX:7523937-7524017 7.17e-03 14_[+3(8.46e-05)]_45_[+3(1.73e-05)]_\ 5 chrII:5841320-5841400 3.54e-01 80 chrX:3537039-3537119 2.93e-02 42_[+1(3.21e-05)]_30 chrIII:6742815-6742895 1.99e-01 80 chrV:6768646-6768726 1.13e-01 80 chrIII:8815854-8815934 4.28e-02 11_[+5(3.81e-05)]_61 chrX:14684522-14684602 6.80e-02 80 chrIV:11067176-11067256 5.41e-02 72_[+2(5.86e-05)] chrV:9958766-9958846 1.42e-02 80 chrV:11036207-11036287 6.16e-01 80 chrX:17043084-17043164 4.06e-05 9_[+5(6.79e-05)]_17_[+1(4.94e-05)]_\ 38 chrX:17667452-17667532 1.38e-02 25_[+2(9.58e-05)]_47 chrV:12477324-12477404 7.47e-03 80 chrI:7952524-7952604 4.54e-01 80 chrV:4777738-4777818 3.76e-01 80 chrX:8763070-8763150 6.67e-02 80 chrII:8499221-8499301 4.87e-01 80 chrX:7715638-7715718 1.93e-01 80 chrII:7722934-7723014 9.08e-02 80 chrV:5303096-5303176 5.70e-03 80 chrI:10262266-10262346 1.06e-01 80 chrV:6342657-6342737 4.71e-02 69_[+4(5.65e-05)]_3 chrIV:7098695-7098775 6.49e-03 30_[+2(3.72e-05)]_14_[+5(5.95e-05)]_\ 20 chrX:8724013-8724093 8.27e-02 80 chrII:13500781-13500861 5.56e-01 80 chrIII:13616967-13617047 1.95e-04 68_[+1(1.48e-05)]_4 chrIII:10817184-10817264 2.38e-02 80 chrV:5296124-5296204 1.03e-01 80 chrIII:5563861-5563941 2.55e-03 80 chrII:7640306-7640386 5.92e-01 80 chrX:16534679-16534759 9.43e-02 5_[+2(5.86e-05)]_67 chrX:14287993-14288073 8.52e-02 80 chrV:1471308-1471388 8.14e-03 12_[+3(8.46e-05)]_60 chrV:281209-281289 6.87e-04 21_[+4(4.38e-05)]_51 chrX:3689469-3689549 4.45e-01 80 chrI:14533011-14533091 2.47e-06 10_[+2(1.95e-05)]_19_[+4(9.52e-05)]_\ 3_[+1(1.48e-05)]_24 chrI:9739564-9739644 8.26e-01 80 chrX:17456984-17457064 8.72e-02 80 chrV:11309086-11309166 1.73e-01 27_[+2(3.72e-05)]_45 chrX:17528257-17528337 1.77e-01 80 chrV:13084091-13084171 6.03e-03 14_[+3(8.46e-05)]_12_[+3(1.73e-05)]_\ 4_[+1(6.96e-05)]_26 chrI:4050746-4050826 2.12e-02 2_[+5(5.95e-05)]_70 chrX:16392290-16392370 8.41e-05 36_[+4(1.48e-05)]_23_[+3(8.46e-05)]_\ 5 chrI:3988738-3988818 2.73e-02 17_[+4(1.48e-05)]_55 chrV:20793945-20794025 2.05e-01 56_[+5(8.76e-05)]_16 chrIII:10248884-10248964 6.20e-01 80 chrI:5599525-5599605 2.46e-01 40_[+2(7.63e-05)]_32 chrX:17458987-17459067 1.20e-02 80 chrIII:5129425-5129505 4.45e-04 15_[+1(1.48e-05)]_15_[+3(1.73e-05)]_\ 34 chrII:9072634-9072714 1.41e-01 17_[+2(1.95e-05)]_31_[+2(1.95e-05)]_\ 16 chrV:6346190-6346270 6.07e-01 80 chrX:7573686-7573766 7.61e-02 80 chrI:3405893-3405973 5.25e-03 80 chrX:10068671-10068751 5.94e-04 38_[+4(1.48e-05)]_34 chrII:8783582-8783662 6.86e-01 80 chrIII:2027634-2027714 8.25e-01 80 chrV:6204254-6204334 4.26e-01 80 chrX:9161437-9161517 5.21e-03 27_[+4(3.11e-05)]_45 chrIII:4113764-4113844 6.56e-07 5_[+3(1.73e-05)]_4_[+5(6.79e-05)]_\ 15_[+1(6.96e-05)]_15_[+4(3.11e-05)]_9 chrX:8789208-8789288 3.38e-01 80 chrX:15338344-15338424 1.97e-04 5_[+4(1.48e-05)]_67 chrV:284960-285040 5.32e-02 41_[+4(7.04e-05)]_31 chrX:16098245-16098325 6.69e-01 80 chrIII:6655954-6656034 6.08e-01 80 chrIII:3601372-3601452 2.20e-02 80 chrI:5777420-5777500 3.69e-03 4_[+4(3.11e-05)]_39_[+2(9.58e-05)]_\ 21 chrIV:15274275-15274355 6.93e-02 7_[+2(9.58e-05)]_65 chrIII:2170762-2170842 7.25e-05 [+3(1.73e-05)]_7_[+1(3.21e-05)]_57 chrX:13873534-13873614 6.95e-03 80 chrIII:3783033-3783113 2.06e-01 80 chrV:6751834-6751914 3.49e-02 32_[+2(5.86e-05)]_40 chrI:4941299-4941379 8.43e-03 32_[+1(1.48e-05)]_40 chrIV:12010594-12010674 1.67e-01 80 chrIV:12113150-12113230 3.61e-01 6_[+2(5.86e-05)]_66 chrI:5015800-5015880 1.93e-01 80 chrI:7383268-7383348 1.14e-01 80 chrIV:6014015-6014095 4.30e-02 80 chrX:5509630-5509710 9.19e-05 60_[+3(1.73e-05)]_12 chrX:8276411-8276491 1.63e-01 80 chrII:7635408-7635488 2.91e-01 80 chrV:14871555-14871635 2.06e-02 71_[+2(3.72e-05)]_1 chrI:14898720-14898800 1.56e-03 [+1(9.49e-05)]_24_[+2(9.58e-05)]_40 chrIV:11350985-11351065 5.15e-03 37_[+1(1.48e-05)]_[+1(6.96e-05)]_27 chrV:12518870-12518950 2.56e-05 25_[+1(6.96e-05)]_8_[+5(8.76e-05)]_\ 31 chrI:3891519-3891599 5.70e-01 80 chrX:6410507-6410587 2.16e-04 19_[+1(1.48e-05)]_11_[+5(9.10e-06)]_\ 34 chrI:7040901-7040981 4.38e-01 80 chrV:9112052-9112132 2.33e-03 46_[+1(1.48e-05)]_26 chrV:12517913-12517993 1.05e-02 80 chrIII:6405263-6405343 4.72e-01 80 chrX:10618850-10618930 5.80e-02 80 chrV:10146960-10147040 7.72e-04 52_[+3(8.46e-05)]_20 chrX:2189007-2189087 1.35e-02 71_[+4(1.48e-05)]_1 chrIII:5564918-5564998 3.82e-03 2_[+1(8.23e-05)]_2_[+5(5.95e-05)]_\ 25_[+5(8.76e-05)]_27 chrX:15575572-15575652 2.35e-03 23_[+3(3.21e-05)]_49 chrX:493123-493203 6.45e-01 80 chrX:4266383-4266463 3.19e-02 61_[+4(1.48e-05)]_11 chrIII:9731466-9731546 2.45e-02 80 chrIII:7217230-7217310 1.24e-02 80 chrI:10751803-10751883 5.47e-05 55_[+1(1.48e-05)]_17 chrV:7822771-7822851 8.32e-02 80 chrIII:4731474-4731554 9.49e-03 80 chrIV:11710499-11710579 4.61e-01 80 chrX:14731981-14732061 2.35e-03 80 chrIII:10526064-10526144 1.03e-01 7_[+2(7.63e-05)]_65 chrV:2809652-2809732 9.38e-02 53_[+2(7.63e-05)]_19 chrX:15014109-15014189 7.47e-01 80 chrIV:7095709-7095789 9.97e-01 80 chrX:11379479-11379559 4.24e-01 80 chrIII:7560052-7560132 8.34e-01 80 chrV:8667520-8667600 5.82e-02 58_[+1(6.96e-05)]_14 chrIII:11942856-11942936 4.75e-01 80 chrV:11836249-11836329 7.71e-04 4_[+5(9.10e-06)]_68 chrIV:4506789-4506869 3.08e-02 80 chrX:4957371-4957451 8.34e-01 80 chrI:6882066-6882146 2.64e-03 30_[+5(8.76e-05)]_42 chrIV:7723666-7723746 1.84e-01 80 chrII:6709168-6709248 5.27e-01 80 chrI:7028329-7028409 1.91e-02 5_[+4(3.11e-05)]_67 chrIV:9538410-9538490 2.73e-02 42_[+4(8.43e-05)]_30 chrV:11140490-11140570 3.27e-02 80 chrIV:12637486-12637566 3.53e-01 80 chrI:5997574-5997654 5.18e-01 80 chrI:7036863-7036943 2.25e-01 80 chrIV:11649180-11649260 2.25e-03 48_[+1(6.96e-05)]_4_[+3(1.73e-05)]_\ 12 chrV:11080483-11080563 1.79e-02 80 chrI:2580184-2580264 4.20e-01 60_[+2(9.58e-05)]_12 chrI:14863583-14863663 2.41e-02 80 chrIV:7390454-7390534 8.88e-03 14_[+3(1.73e-05)]_58 chrIV:6393402-6393482 1.47e-02 21_[+1(3.21e-05)]_24_[+1(3.21e-05)]_\ 19 chrII:1375680-1375760 6.50e-01 80 chrV:4524042-4524122 3.90e-01 80 chrII:6170395-6170475 4.87e-01 80 chrII:6236469-6236549 2.42e-01 80 chrIII:6402541-6402621 2.28e-01 80 chrV:14909481-14909561 3.45e-03 20_[+1(6.96e-05)]_52 chrII:6707696-6707776 8.93e-02 80 chrV:12479141-12479221 4.01e-04 28_[+1(6.96e-05)]_5_[+3(1.73e-05)]_\ 31 chrV:19546836-19546916 6.41e-02 35_[+2(7.63e-05)]_[+2(7.63e-05)]_29 chrX:15019463-15019543 1.09e-02 80 chrX:5209647-5209727 7.07e-03 71_[+1(6.96e-05)]_1 chrI:4030694-4030774 6.63e-02 80 chrX:16655434-16655514 2.51e-03 36_[+2(1.95e-05)]_36 chrX:5592687-5592767 9.35e-03 49_[+3(1.73e-05)]_23 chrI:4840976-4841056 5.57e-01 80 chrX:14653719-14653799 1.59e-03 27_[+4(5.65e-05)]_45 chrX:1082083-1082163 2.47e-01 80 chrV:4157495-4157575 1.18e-01 80 chrX:13204896-13204976 1.26e-01 80 chrIV:5753395-5753475 2.72e-04 13_[+2(3.72e-05)]_17_[+2(7.63e-05)]_\ 23_[+1(3.21e-05)]_3 chrX:2620487-2620567 2.95e-01 80 chrII:4518453-4518533 8.28e-01 80 chrIV:3168936-3169016 1.94e-04 59_[+2(1.95e-05)]_13 chrI:4046759-4046839 3.38e-03 80 chrI:7381104-7381184 9.31e-03 80 chrIV:1758771-1758851 2.64e-01 80 chrIV:8605403-8605483 1.21e-03 33_[+1(1.48e-05)]_1_[+1(6.96e-05)]_\ 30 chrI:4936286-4936366 5.76e-03 [+3(1.73e-05)]_1_[+3(3.21e-05)]_63 chrI:5176091-5176171 7.82e-01 80 chrI:6879582-6879662 2.13e-02 30_[+4(4.38e-05)]_42 chrV:6030692-6030772 6.17e-01 80 chrIII:5835308-5835388 2.05e-01 39_[+2(7.63e-05)]_4_[+2(7.63e-05)]_\ 21 chrIII:5894376-5894456 2.29e-02 58_[+2(9.58e-05)]_14 chrV:11506486-11506566 1.82e-02 80 chrIII:1678852-1678932 7.84e-03 9_[+1(3.21e-05)]_63 chrIV:1108227-1108307 5.58e-01 80 chrIII:9457520-9457600 3.70e-04 18_[+1(1.48e-05)]_2_[+4(4.38e-05)]_\ 44 chrV:11082612-11082692 9.13e-04 54_[+2(1.95e-05)]_18 chrV:18581926-18582006 8.07e-01 80 chrII:13789944-13790024 1.07e-02 37_[+3(1.73e-05)]_35 chrIII:6988205-6988285 4.96e-02 80 chrIII:6138658-6138738 4.01e-03 80 chrV:10727865-10727945 3.20e-01 15_[+2(5.86e-05)]_57 chrI:14628091-14628171 7.64e-02 30_[+5(3.81e-05)]_42 chrIV:10979779-10979859 2.16e-03 42_[+3(1.73e-05)]_30 chrIII:10824360-10824440 5.52e-04 80 chrII:526518-526598 3.49e-01 80 chrI:10074865-10074945 1.86e-04 37_[+4(1.48e-05)]_7_[+1(1.48e-05)]_\ 20 chrX:16389441-16389521 2.17e-02 80 chrIV:14606604-14606684 1.51e-02 8_[+3(8.46e-05)]_50_[+1(9.49e-05)]_\ 6 chrIII:822637-822717 3.37e-04 1_[+4(3.11e-05)]_39_[+1(4.94e-05)]_\ 24 chrI:2591613-2591693 3.36e-02 5_[+4(7.04e-05)]_67 chrV:13088772-13088852 8.31e-01 80 chrV:6930500-6930580 3.35e-01 80 chrI:5589616-5589696 1.82e-03 [+4(4.38e-05)]_19_[+1(8.23e-05)]_45 chrIII:3994602-3994682 4.85e-02 80 chrV:14800443-14800523 7.74e-02 14_[+3(8.46e-05)]_58 chrII:10204844-10204924 8.25e-05 27_[+5(5.95e-05)]_23_[+1(8.23e-05)]_\ 14 chrI:435526-435606 2.20e-04 34_[+5(3.81e-05)]_14_[+1(9.49e-05)]_\ [+1(1.48e-05)]_[+1(8.23e-05)] chrV:1480948-1481028 2.43e-02 80 chrX:16525796-16525876 3.72e-02 57_[+4(9.52e-05)]_15 chrX:11035685-11035765 9.97e-01 80 chrX:13637643-13637723 6.32e-02 80 chrIV:3163679-3163759 2.83e-03 31_[+1(3.21e-05)]_41 chrII:6028694-6028774 5.30e-01 80 chrIV:5134152-5134232 7.81e-01 80 chrII:11713670-11713750 2.35e-01 80 chrIV:11489863-11489943 5.19e-02 80 chrIV:8533487-8533567 3.48e-02 80 chrI:14862315-14862395 1.08e-01 80 chrV:20451948-20452028 2.65e-01 80 chrIII:9083414-9083494 3.38e-02 55_[+2(9.58e-05)]_17 chrIV:9928621-9928701 3.49e-03 4_[+3(1.73e-05)]_68 chrIII:8287695-8287775 1.13e-02 2_[+3(8.46e-05)]_70 chrII:8105188-8105268 2.08e-02 80 chrII:6136901-6136981 2.02e-01 80 chrI:10105493-10105573 4.98e-03 [+1(1.48e-05)]_28_[+1(6.96e-05)]_36 chrX:16812077-16812157 7.13e-01 80 chrX:13605046-13605126 5.03e-03 14_[+1(1.48e-05)]_58 chrI:14936697-14936777 8.95e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************