******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-16.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:12678666-12678746 1.0000 80 chrIII:10306211-10306291 1.0000 80 chrIII:5119191-5119271 1.0000 80 chrIV:12531643-12531723 1.0000 80 chrIII:2974093-2974173 1.0000 80 chrII:2436946-2437026 1.0000 80 chrIII:5965523-5965603 1.0000 80 chrII:12980726-12980806 1.0000 80 chrX:12154449-12154529 1.0000 80 chrX:6669536-6669616 1.0000 80 chrV:597056-597136 1.0000 80 chrV:14151030-14151110 1.0000 80 chrIII:9110385-9110465 1.0000 80 chrII:4982193-4982273 1.0000 80 chrII:6419333-6419413 1.0000 80 chrI:5707562-5707642 1.0000 80 chrI:2842164-2842244 1.0000 80 chrI:9545553-9545633 1.0000 80 chrX:504635-504715 1.0000 80 chrX:6796001-6796081 1.0000 80 chrII:8417260-8417340 1.0000 80 chrIII:7551144-7551224 1.0000 80 chrX:15311158-15311238 1.0000 80 chrII:5735917-5735997 1.0000 80 chrX:10245774-10245854 1.0000 80 chrII:11277065-11277145 1.0000 80 chrII:12991785-12991865 1.0000 80 chrV:1579998-1580078 1.0000 80 chrIV:9618980-9619060 1.0000 80 chrIV:11882662-11882742 1.0000 80 chrX:9456747-9456827 1.0000 80 chrI:7216232-7216312 1.0000 80 chrIII:2973126-2973206 1.0000 80 chrX:8454474-8454554 1.0000 80 chrIII:5719261-5719341 1.0000 80 chrI:985250-985330 1.0000 80 chrIV:10916303-10916383 1.0000 80 chrX:5479046-5479126 1.0000 80 chrIV:5923252-5923332 1.0000 80 chrIV:3438171-3438251 1.0000 80 chrIII:6358894-6358974 1.0000 80 chrV:11779464-11779544 1.0000 80 chrIV:6492069-6492149 1.0000 80 chrII:9645117-9645197 1.0000 80 chrII:7238946-7239026 1.0000 80 chrI:4324185-4324265 1.0000 80 chrV:1567125-1567205 1.0000 80 chrI:11782449-11782529 1.0000 80 chrIV:16396788-16396868 1.0000 80 chrII:7802017-7802097 1.0000 80 chrIV:12540381-12540461 1.0000 80 chrIII:7645296-7645376 1.0000 80 chrI:32740-32820 1.0000 80 chrV:5426482-5426562 1.0000 80 chrX:11963855-11963935 1.0000 80 chrII:5297902-5297982 1.0000 80 chrIV:6496241-6496321 1.0000 80 chrII:9026483-9026563 1.0000 80 chrV:6254101-6254181 1.0000 80 chrII:4767802-4767882 1.0000 80 chrX:13012016-13012096 1.0000 80 chrX:16555877-16555957 1.0000 80 chrII:12982111-12982191 1.0000 80 chrI:4322861-4322941 1.0000 80 chrI:6746570-6746650 1.0000 80 chrV:597952-598032 1.0000 80 chrII:11017033-11017113 1.0000 80 chrII:7803320-7803400 1.0000 80 chrX:2041068-2041148 1.0000 80 chrIII:9991470-9991550 1.0000 80 chrV:6249317-6249397 1.0000 80 chrX:6277439-6277519 1.0000 80 chrX:11726675-11726755 1.0000 80 chrV:8660651-8660731 1.0000 80 chrI:9334578-9334658 1.0000 80 chrX:6671867-6671947 1.0000 80 chrX:2704058-2704138 1.0000 80 chrX:9086007-9086087 1.0000 80 chrII:9283863-9283943 1.0000 80 chrII:11076663-11076743 1.0000 80 chrII:11192503-11192583 1.0000 80 chrIV:3439509-3439589 1.0000 80 chrIV:16400554-16400634 1.0000 80 chrX:11033786-11033866 1.0000 80 chrX:2713165-2713245 1.0000 80 chrX:6383045-6383125 1.0000 80 chrIV:3014795-3014875 1.0000 80 chrX:12511541-12511621 1.0000 80 chrIV:11211673-11211753 1.0000 80 chrII:7808304-7808384 1.0000 80 chrIV:13716926-13717006 1.0000 80 chrIV:15651010-15651090 1.0000 80 chrI:12771644-12771724 1.0000 80 chrIV:13719037-13719117 1.0000 80 chrIV:3440988-3441068 1.0000 80 chrX:9512640-9512720 1.0000 80 chrIV:5082043-5082123 1.0000 80 chrI:2844542-2844622 1.0000 80 chrV:11198304-11198384 1.0000 80 chrIII:2633160-2633240 1.0000 80 chrII:7930854-7930934 1.0000 80 chrI:14138257-14138337 1.0000 80 chrII:1214771-1214851 1.0000 80 chrX:14487483-14487563 1.0000 80 chrIII:5964154-5964234 1.0000 80 chrI:6079057-6079137 1.0000 80 chrV:4505593-4505673 1.0000 80 chrX:14576083-14576163 1.0000 80 chrV:8669013-8669093 1.0000 80 chrV:13333562-13333642 1.0000 80 chrX:8858810-8858890 1.0000 80 chrII:7799836-7799916 1.0000 80 chrX:5702818-5702898 1.0000 80 chrI:524513-524593 1.0000 80 chrI:2833153-2833233 1.0000 80 chrX:16552003-16552083 1.0000 80 chrX:9228568-9228648 1.0000 80 chrIV:11903837-11903917 1.0000 80 chrV:14506857-14506937 1.0000 80 chrIV:2321713-2321793 1.0000 80 chrV:8045107-8045187 1.0000 80 chrII:6821261-6821341 1.0000 80 chrV:5523417-5523497 1.0000 80 chrI:527317-527397 1.0000 80 chrI:7216744-7216824 1.0000 80 chrIV:9615672-9615752 1.0000 80 chrX:6092650-6092730 1.0000 80 chrX:12172730-12172810 1.0000 80 chrIV:1547306-1547386 1.0000 80 chrX:12671808-12671888 1.0000 80 chrIII:12134844-12134924 1.0000 80 chrI:2967777-2967857 1.0000 80 chrIV:9790894-9790974 1.0000 80 chrV:13866498-13866578 1.0000 80 chrIII:7299641-7299721 1.0000 80 chrII:7534524-7534604 1.0000 80 chrX:9406105-9406185 1.0000 80 chrII:9064613-9064693 1.0000 80 chrIV:16397974-16398054 1.0000 80 chrX:2145820-2145900 1.0000 80 chrX:10302117-10302197 1.0000 80 chrI:11554524-11554604 1.0000 80 chrX:14500476-14500556 1.0000 80 chrX:17424414-17424494 1.0000 80 chrIII:8577681-8577761 1.0000 80 chrX:13004873-13004953 1.0000 80 chrIV:1911321-1911401 1.0000 80 chrX:10647781-10647861 1.0000 80 chrIII:6364479-6364559 1.0000 80 chrX:13120092-13120172 1.0000 80 chrX:15310448-15310528 1.0000 80 chrII:10210172-10210252 1.0000 80 chrI:5688013-5688093 1.0000 80 chrIV:9608000-9608080 1.0000 80 chrX:13389011-13389091 1.0000 80 chrX:13736827-13736907 1.0000 80 chrI:14908053-14908133 1.0000 80 chrV:13389558-13389638 1.0000 80 chrX:772333-772413 1.0000 80 chrI:180242-180322 1.0000 80 chrX:13974871-13974951 1.0000 80 chrV:8652283-8652363 1.0000 80 chrI:6733392-6733472 1.0000 80 chrV:11197132-11197212 1.0000 80 chrV:13000697-13000777 1.0000 80 chrII:4759984-4760064 1.0000 80 chrI:11205666-11205746 1.0000 80 chrX:13745703-13745783 1.0000 80 chrIII:4011621-4011701 1.0000 80 chrI:8986045-8986125 1.0000 80 chrII:11205929-11206009 1.0000 80 chrI:13034855-13034935 1.0000 80 chrI:3719499-3719579 1.0000 80 chrIII:3478978-3479058 1.0000 80 chrIII:8567190-8567270 1.0000 80 chrX:2216845-2216925 1.0000 80 chrV:10860781-10860861 1.0000 80 chrII:11888345-11888425 1.0000 80 chrII:11020841-11020921 1.0000 80 chrI:533276-533356 1.0000 80 chrII:8338963-8339043 1.0000 80 chrI:14809494-14809574 1.0000 80 chrI:10403898-10403978 1.0000 80 chrV:19350418-19350498 1.0000 80 chrIV:13695820-13695900 1.0000 80 chrV:538487-538567 1.0000 80 chrV:4361715-4361795 1.0000 80 chrX:5061961-5062041 1.0000 80 chrI:6996084-6996164 1.0000 80 chrV:6458427-6458507 1.0000 80 chrIV:14676006-14676086 1.0000 80 chrX:2709308-2709388 1.0000 80 chrII:12262690-12262770 1.0000 80 chrX:17684971-17685051 1.0000 80 chrII:4573271-4573351 1.0000 80 chrIV:13013361-13013441 1.0000 80 chrII:9891867-9891947 1.0000 80 chrX:17033597-17033677 1.0000 80 chrX:5137822-5137902 1.0000 80 chrIII:7553221-7553301 1.0000 80 chrIV:12130573-12130653 1.0000 80 chrII:2994781-2994861 1.0000 80 chrII:13029446-13029526 1.0000 80 chrIV:13699403-13699483 1.0000 80 chrI:11791614-11791694 1.0000 80 chrX:10304272-10304352 1.0000 80 chrX:2209736-2209816 1.0000 80 chrI:9539496-9539576 1.0000 80 chrV:4628558-4628638 1.0000 80 chrV:13391026-13391106 1.0000 80 chrV:8668366-8668446 1.0000 80 chrII:13293608-13293688 1.0000 80 chrII:11794522-11794602 1.0000 80 chrX:11606984-11607064 1.0000 80 chrI:7715992-7716072 1.0000 80 chrII:4986302-4986382 1.0000 80 chrV:1579029-1579109 1.0000 80 chrII:15213903-15213983 1.0000 80 chrI:14810168-14810248 1.0000 80 chrIII:5836374-5836454 1.0000 80 chrX:5123202-5123282 1.0000 80 chrIII:13657451-13657531 1.0000 80 chrX:9667574-9667654 1.0000 80 chrX:8554148-8554228 1.0000 80 chrIV:13704178-13704258 1.0000 80 chrII:6835673-6835753 1.0000 80 chrV:8661452-8661532 1.0000 80 chrIII:13659154-13659234 1.0000 80 chrIII:3621567-3621647 1.0000 80 chrV:11774091-11774171 1.0000 80 chrI:3673075-3673155 1.0000 80 chrV:13376030-13376110 1.0000 80 chrX:9547479-9547559 1.0000 80 chrI:528012-528092 1.0000 80 chrX:4961836-4961916 1.0000 80 chrIV:9618207-9618287 1.0000 80 chrI:9332652-9332732 1.0000 80 chrX:5828225-5828305 1.0000 80 chrX:9549091-9549171 1.0000 80 chrX:6029197-6029277 1.0000 80 chrII:10506124-10506204 1.0000 80 chrV:801822-801902 1.0000 80 chrIII:6132272-6132352 1.0000 80 chrIII:7301848-7301928 1.0000 80 chrIII:3797255-3797335 1.0000 80 chrX:15327338-15327418 1.0000 80 chrII:11043995-11044075 1.0000 80 chrV:1618616-1618696 1.0000 80 chrII:301204-301284 1.0000 80 chrIII:7554893-7554973 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ceh-16/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-16.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.279 C 0.222 G 0.209 T 0.291 Background letter frequencies (from file dataset with add-one prior applied): A 0.279 C 0.222 G 0.209 T 0.291 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AGATAAGA MEME-1 width = 8 sites = 52 llr = 399 E-value = 3.2e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGATAAGA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 9:a:7a27 pos.-specific C 1:::::32 probability G :a::3:51 matrix T :::a:::: bits 2.3 * 2.0 * 1.8 ** * 1.6 *** * Relative 1.4 **** * Entropy 1.1 **** * (11.1 bits) 0.9 ****** 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGATAAGA consensus G C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAAGA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:4628558-4628638 63 2.15e-05 GTCCTGTAAG AGATAAGA GATAGATGGG chrII:11888345-11888425 1 2.15e-05 . AGATAAGA AACTTTTGAC chrIII:8577681-8577761 52 2.15e-05 AAGAGACTTG AGATAAGA ATCGAATGAG chrX:12671808-12671888 42 2.15e-05 GTCCTTCTAT AGATAAGA TCTTAGCGAT chrX:6092650-6092730 67 2.15e-05 GTTATGCTGG AGATAAGA ATCTCT chrX:8858810-8858890 55 2.15e-05 agaAAAAAAC AGATAAGA TTTACAAGAA chrI:6079057-6079137 72 2.15e-05 AAGATTTGAA AGATAAGA G chrX:16555877-16555957 48 2.15e-05 CAGATAAAGC AGATAAGA GACGAATTAC chrIV:1547306-1547386 5 4.43e-05 ATCA AGATAACA CAATACCGTG chrX:15311158-15311238 15 4.43e-05 GGCCTTCCTA AGATAACA ATCAGTGTAC chrIII:5965523-5965603 31 4.43e-05 TCTTTTTTGA AGATAACA TCAACAATCA chrV:13376030-13376110 62 6.04e-05 GACGCTACAG AGATGAGA GTGTGGGATA chrV:13866498-13866578 39 6.04e-05 ATGCACGCGG AGATGAGA TCAGTGCAGA chrV:8045107-8045187 15 6.04e-05 CCGACATAAG AGATGAGA GAAGGCCAAG chrI:2844542-2844622 58 6.04e-05 TTTGAAATGG AGATGAGA TCATTCCTAA chrII:11043995-11044075 4 8.91e-05 TTC AGATAAAA TCTAATCTTC chrII:9891867-9891947 31 8.91e-05 CAAATGAAAT AGATAAAA TCAGCCGCAG chrX:2145820-2145900 64 8.91e-05 TGATGGGCTG AGATAAAA TGAAATTCC chrIV:6496241-6496321 47 8.91e-05 CAAAATTTAG AGATAAAA ATTCTCTCAC chrII:7802017-7802097 52 8.91e-05 CAGAATCCTC AGATAAAA ATCTCGAAAA chrV:1579029-1579109 19 1.06e-04 TGCGGGTGTC AGATAAGC GGAAGTCGCT chrIII:3478978-3479058 56 1.06e-04 CTGATGATGG AGATAAGC TGGAAATGTG chrX:9512640-9512720 29 1.06e-04 ATTCCCAATT AGATAAGC CCATCGTCTC chrV:13389558-13389638 64 1.22e-04 TTCTGTGGGA AGATAAGG GAACCAGTA chrX:504635-504715 32 1.22e-04 ATTTTGATCA AGATAAGG GTGACATTCA chrV:801822-801902 9 1.39e-04 AACTGCCT AGATGACA ATCTCACCTT chrV:11774091-11774171 47 1.39e-04 ATTTCTCTGA AGATGACA TCAGGGTCAG chrV:5426482-5426562 20 1.56e-04 TCAAAAACAT CGATAAGA TCAGAGTAAA chrX:9456747-9456827 22 1.56e-04 ACAACTTGGG CGATAAGA CGGTTGAGAT chrIV:9618207-9618287 34 1.96e-04 CCGAAATTCA AGATAACC ATCTTTTTTC chrI:3719499-3719579 61 1.96e-04 CGAAAAATAT AGATGAAA ACTGTGTCGC chrII:11076663-11076743 60 1.96e-04 CTCAAAATCA AGATAACC GAGGCACCAC chrII:12982111-12982191 15 1.96e-04 TCATTTCCAG AGATAACC ATCACCATCA chrIII:6358894-6358974 44 1.96e-04 GATGTGAAAA AGATGAAA AACCAGGAAG chrII:11277065-11277145 44 1.96e-04 TTCCTGTCGC AGATAACC GTGTGTGGGG chrII:6419333-6419413 63 1.96e-04 TTTAGACAAT AGATAACC AAGATTTTGG chrX:8554148-8554228 56 2.26e-04 AAAACGGACC AGATAACG AACAGGTGCC chrV:19350418-19350498 13 2.26e-04 GATATCGGAA AGATAACG ATCTAGCAGG chrIV:13704178-13704258 40 2.61e-04 GTCAATTGAT AGATGAGG AGTAGGTGTG chrV:5523417-5523497 36 2.61e-04 ATTTCGATCA AGATAAAC TGGGTGAATT chrII:7930854-7930934 5 2.61e-04 CATC AGATGAGG CGTCGAAAAA chrV:14506857-14506937 15 3.01e-04 CGCGCGTTGG CGATAACA ATCTACAATG chrV:1618616-1618696 61 3.13e-04 GACATCTTAC CGATGAGA CGTCCGATAG chrI:2967777-2967857 37 3.50e-04 TGTTCGTCGG CGATAAAA AAGGAGAATG chrX:2704058-2704138 66 3.50e-04 TAAGTGGGAA CGATAAAA GTATTAG chrV:6249317-6249397 55 3.50e-04 ATCTGTCGAT CGATAAAA GAGACACAAA chrV:6254101-6254181 41 3.81e-04 CAAAAGAGGT AGATCAGA TCTTTGTCTA chrIV:5923252-5923332 10 3.81e-04 ACGCGAGAA AGATCAGA AAAATAGATT chrX:10302117-10302197 46 4.16e-04 TTACACATAA AGATAAGT AAATGCGACC chrV:1579998-1580078 58 4.16e-04 GGGGGCAAGC AGATAAGT ATCGTTAGGC chrII:8417260-8417340 69 4.75e-04 CAAGAGAACG AGATGAAG ATTG chrI:527317-527397 73 8.27e-04 CACATTTGGA AGAGGAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAAGA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:4628558-4628638 2.1e-05 62_[+1]_10 chrII:11888345-11888425 2.1e-05 [+1]_72 chrIII:8577681-8577761 2.1e-05 51_[+1]_21 chrX:12671808-12671888 2.1e-05 41_[+1]_31 chrX:6092650-6092730 2.1e-05 66_[+1]_6 chrX:8858810-8858890 2.1e-05 54_[+1]_18 chrI:6079057-6079137 2.1e-05 71_[+1]_1 chrX:16555877-16555957 2.1e-05 47_[+1]_25 chrIV:1547306-1547386 4.4e-05 4_[+1]_68 chrX:15311158-15311238 4.4e-05 14_[+1]_58 chrIII:5965523-5965603 4.4e-05 30_[+1]_42 chrV:13376030-13376110 6e-05 61_[+1]_11 chrV:13866498-13866578 6e-05 38_[+1]_34 chrV:8045107-8045187 6e-05 14_[+1]_58 chrI:2844542-2844622 6e-05 57_[+1]_15 chrII:11043995-11044075 8.9e-05 3_[+1]_69 chrII:9891867-9891947 8.9e-05 30_[+1]_42 chrX:2145820-2145900 8.9e-05 63_[+1]_9 chrIV:6496241-6496321 8.9e-05 46_[+1]_26 chrII:7802017-7802097 8.9e-05 51_[+1]_21 chrV:1579029-1579109 0.00011 18_[+1]_54 chrIII:3478978-3479058 0.00011 55_[+1]_17 chrX:9512640-9512720 0.00011 28_[+1]_44 chrV:13389558-13389638 0.00012 63_[+1]_9 chrX:504635-504715 0.00012 31_[+1]_41 chrV:801822-801902 0.00014 8_[+1]_64 chrV:11774091-11774171 0.00014 46_[+1]_26 chrV:5426482-5426562 0.00016 19_[+1]_53 chrX:9456747-9456827 0.00016 21_[+1]_51 chrIV:9618207-9618287 0.0002 33_[+1]_39 chrI:3719499-3719579 0.0002 60_[+1]_12 chrII:11076663-11076743 0.0002 59_[+1]_13 chrII:12982111-12982191 0.0002 14_[+1]_58 chrIII:6358894-6358974 0.0002 43_[+1]_29 chrII:11277065-11277145 0.0002 43_[+1]_29 chrII:6419333-6419413 0.0002 62_[+1]_10 chrX:8554148-8554228 0.00023 55_[+1]_17 chrV:19350418-19350498 0.00023 12_[+1]_60 chrIV:13704178-13704258 0.00026 39_[+1]_33 chrV:5523417-5523497 0.00026 35_[+1]_37 chrII:7930854-7930934 0.00026 4_[+1]_68 chrV:14506857-14506937 0.0003 14_[+1]_58 chrV:1618616-1618696 0.00031 60_[+1]_12 chrI:2967777-2967857 0.00035 36_[+1]_36 chrX:2704058-2704138 0.00035 65_[+1]_7 chrV:6249317-6249397 0.00035 54_[+1]_18 chrV:6254101-6254181 0.00038 40_[+1]_32 chrIV:5923252-5923332 0.00038 9_[+1]_63 chrX:10302117-10302197 0.00042 45_[+1]_27 chrV:1579998-1580078 0.00042 57_[+1]_15 chrII:8417260-8417340 0.00048 68_[+1]_4 chrI:527317-527397 0.00083 72_[+1] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAAGA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGATAAGA width=8 seqs=52 chrV:4628558-4628638 ( 63) AGATAAGA 1 chrII:11888345-11888425 ( 1) AGATAAGA 1 chrIII:8577681-8577761 ( 52) AGATAAGA 1 chrX:12671808-12671888 ( 42) AGATAAGA 1 chrX:6092650-6092730 ( 67) AGATAAGA 1 chrX:8858810-8858890 ( 55) AGATAAGA 1 chrI:6079057-6079137 ( 72) AGATAAGA 1 chrX:16555877-16555957 ( 48) AGATAAGA 1 chrIV:1547306-1547386 ( 5) AGATAACA 1 chrX:15311158-15311238 ( 15) AGATAACA 1 chrIII:5965523-5965603 ( 31) AGATAACA 1 chrV:13376030-13376110 ( 62) AGATGAGA 1 chrV:13866498-13866578 ( 39) AGATGAGA 1 chrV:8045107-8045187 ( 15) AGATGAGA 1 chrI:2844542-2844622 ( 58) AGATGAGA 1 chrII:11043995-11044075 ( 4) AGATAAAA 1 chrII:9891867-9891947 ( 31) AGATAAAA 1 chrX:2145820-2145900 ( 64) AGATAAAA 1 chrIV:6496241-6496321 ( 47) AGATAAAA 1 chrII:7802017-7802097 ( 52) AGATAAAA 1 chrV:1579029-1579109 ( 19) AGATAAGC 1 chrIII:3478978-3479058 ( 56) AGATAAGC 1 chrX:9512640-9512720 ( 29) AGATAAGC 1 chrV:13389558-13389638 ( 64) AGATAAGG 1 chrX:504635-504715 ( 32) AGATAAGG 1 chrV:801822-801902 ( 9) AGATGACA 1 chrV:11774091-11774171 ( 47) AGATGACA 1 chrV:5426482-5426562 ( 20) CGATAAGA 1 chrX:9456747-9456827 ( 22) CGATAAGA 1 chrIV:9618207-9618287 ( 34) AGATAACC 1 chrI:3719499-3719579 ( 61) AGATGAAA 1 chrII:11076663-11076743 ( 60) AGATAACC 1 chrII:12982111-12982191 ( 15) AGATAACC 1 chrIII:6358894-6358974 ( 44) AGATGAAA 1 chrII:11277065-11277145 ( 44) AGATAACC 1 chrII:6419333-6419413 ( 63) AGATAACC 1 chrX:8554148-8554228 ( 56) AGATAACG 1 chrV:19350418-19350498 ( 13) AGATAACG 1 chrIV:13704178-13704258 ( 40) AGATGAGG 1 chrV:5523417-5523497 ( 36) AGATAAAC 1 chrII:7930854-7930934 ( 5) AGATGAGG 1 chrV:14506857-14506937 ( 15) CGATAACA 1 chrV:1618616-1618696 ( 61) CGATGAGA 1 chrI:2967777-2967857 ( 37) CGATAAAA 1 chrX:2704058-2704138 ( 66) CGATAAAA 1 chrV:6249317-6249397 ( 55) CGATAAAA 1 chrV:6254101-6254181 ( 41) AGATCAGA 1 chrIV:5923252-5923332 ( 10) AGATCAGA 1 chrX:10302117-10302197 ( 46) AGATAAGT 1 chrV:1579998-1580078 ( 58) AGATAAGT 1 chrII:8417260-8417340 ( 69) AGATGAAG 1 chrI:527317-527397 ( 73) AGAGGAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAAGA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.98284 E= 3.2e-004 164 -72 -1234 -1234 -1234 -1234 226 -1234 184 -1234 -1234 -1234 -1234 -1234 -344 175 135 -253 26 -1234 184 -1234 -1234 -1234 -27 17 131 -1234 123 -36 -63 -292 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAAGA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 3.2e-004 0.865385 0.134615 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.019231 0.980769 0.711538 0.038462 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 0.230769 0.250000 0.519231 0.000000 0.653846 0.173077 0.134615 0.038462 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGATAAGA MEME-1 regular expression -------------------------------------------------------------------------------- AGAT[AG]A[GCA]A -------------------------------------------------------------------------------- Time 8.49 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCGCGCC MEME-2 width = 8 sites = 17 llr = 164 E-value = 6.9e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCGCGCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2:::::1: pos.-specific C 6:8:a:97 probability G 1a2a:a:3 matrix T 1::::::: bits 2.3 * *** 2.0 * *** 1.8 * *** 1.6 * **** Relative 1.4 ******* Entropy 1.1 ******* (13.9 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGCGCGCC consensus G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:4573271-4573351 37 4.92e-06 TGGGAACCCC CGCGCGCC TGGCGCCCAG chrX:2145820-2145900 43 4.92e-06 GATGAATTGC CGCGCGCC TACTGATGGG chrV:8669013-8669093 47 4.92e-06 TACGAAATGG CGCGCGCC CGCCATGCGA chrIV:5082043-5082123 37 4.92e-06 CCTGTTGGCG CGCGCGCC CCAGAAGAAG chrII:4982193-4982273 19 4.92e-06 GATCGAAATA CGCGCGCC CTGGCACGGT chrIII:3621567-3621647 30 9.56e-06 AGAGGCGCCC CGCGCGCG ATCATCGAAA chrX:2216845-2216925 26 9.56e-06 CACGCGGCAG CGCGCGCG GGGACAGGCT chrV:8660651-8660731 2 9.56e-06 G CGCGCGCG CACCACACGA chrX:17684971-17685051 49 1.42e-05 TTTTTGCAAT CGGGCGCC CCGGCTGAAG chrIII:9110385-9110465 40 3.12e-05 TTGCCAAGGT TGCGCGCC ACTTGACTAA chrX:5828225-5828305 66 4.78e-05 CCTTTCATTC CGCGCGAC CTAAAAT chrX:13389011-13389091 19 4.78e-05 TCCGGTAATA GGCGCGCC GTCGCTTGCA chrII:10506124-10506204 23 5.37e-05 GTCGCCGGAG AGGGCGCC CTGTGTCAGA chrII:7799836-7799916 47 5.37e-05 CCGCGTGTCA AGGGCGCC GATTTGCCGC chrV:14151030-14151110 20 5.37e-05 CTTGTCGAAG AGGGCGCC AGAGACACAA chrV:14506857-14506937 3 5.97e-05 AT TGCGCGCG TTGGCGATAA chrV:13389558-13389638 27 7.60e-05 GAGAAGGTGT CGCGCGAG AGGTACAAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:4573271-4573351 4.9e-06 36_[+2]_36 chrX:2145820-2145900 4.9e-06 42_[+2]_30 chrV:8669013-8669093 4.9e-06 46_[+2]_26 chrIV:5082043-5082123 4.9e-06 36_[+2]_36 chrII:4982193-4982273 4.9e-06 18_[+2]_54 chrIII:3621567-3621647 9.6e-06 29_[+2]_43 chrX:2216845-2216925 9.6e-06 25_[+2]_47 chrV:8660651-8660731 9.6e-06 1_[+2]_71 chrX:17684971-17685051 1.4e-05 48_[+2]_24 chrIII:9110385-9110465 3.1e-05 39_[+2]_33 chrX:5828225-5828305 4.8e-05 65_[+2]_7 chrX:13389011-13389091 4.8e-05 18_[+2]_54 chrII:10506124-10506204 5.4e-05 22_[+2]_50 chrII:7799836-7799916 5.4e-05 46_[+2]_26 chrV:14151030-14151110 5.4e-05 19_[+2]_53 chrV:14506857-14506937 6e-05 2_[+2]_70 chrV:13389558-13389638 7.6e-05 26_[+2]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCGCGCC width=8 seqs=17 chrII:4573271-4573351 ( 37) CGCGCGCC 1 chrX:2145820-2145900 ( 43) CGCGCGCC 1 chrV:8669013-8669093 ( 47) CGCGCGCC 1 chrIV:5082043-5082123 ( 37) CGCGCGCC 1 chrII:4982193-4982273 ( 19) CGCGCGCC 1 chrIII:3621567-3621647 ( 30) CGCGCGCG 1 chrX:2216845-2216925 ( 26) CGCGCGCG 1 chrV:8660651-8660731 ( 2) CGCGCGCG 1 chrX:17684971-17685051 ( 49) CGGGCGCC 1 chrIII:9110385-9110465 ( 40) TGCGCGCC 1 chrX:5828225-5828305 ( 66) CGCGCGAC 1 chrX:13389011-13389091 ( 19) GGCGCGCC 1 chrII:10506124-10506204 ( 23) AGGGCGCC 1 chrII:7799836-7799916 ( 47) AGGGCGCC 1 chrV:14151030-14151110 ( 20) AGGGCGCC 1 chrV:14506857-14506937 ( 3) TGCGCGCG 1 chrV:13389558-13389638 ( 27) CGCGCGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8621 E= 6.9e-001 -66 154 -183 -130 -1073 -1073 226 -1073 -1073 179 17 -1073 -1073 -1073 226 -1073 -1073 217 -1073 -1073 -1073 -1073 226 -1073 -124 199 -1073 -1073 -1073 167 49 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 6.9e-001 0.176471 0.647059 0.058824 0.117647 0.000000 0.000000 1.000000 0.000000 0.000000 0.764706 0.235294 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.117647 0.882353 0.000000 0.000000 0.000000 0.705882 0.294118 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCGCC MEME-2 regular expression -------------------------------------------------------------------------------- CG[CG]GCGC[CG] -------------------------------------------------------------------------------- Time 12.20 secs. ******************************************************************************** ******************************************************************************** MOTIF GGMGAGAG MEME-3 width = 8 sites = 7 llr = 76 E-value = 2.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGMGAGAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::4:a:a: pos.-specific C ::4::::: probability G aa1a:a:a matrix T :::::::: bits 2.3 ** * * * 2.0 ** * * * 1.8 ** ***** 1.6 ** ***** Relative 1.4 ** ***** Entropy 1.1 ** ***** (15.6 bits) 0.9 ** ***** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGAGAGAG consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGMGAGAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:11554524-11554604 62 6.89e-06 AGACCCCCCA GGCGAGAG ATTATTGGAA chrI:524513-524593 29 6.89e-06 GAGAAGCGCT GGCGAGAG ATTCGAAGCG chrI:11782449-11782529 34 6.89e-06 GGTCTGTGTA GGCGAGAG AGATATCCAT chrIII:7553221-7553301 40 1.56e-05 TGGATTGGAA GGAGAGAG GGGCTGGGCG chrII:12262690-12262770 67 1.56e-05 CAAGTCGGTT GGAGAGAG GTTACC chrIII:8567190-8567270 66 1.56e-05 CAATTTTCAA GGAGAGAG AAAACTC chrX:10647781-10647861 25 2.20e-05 TAGTGGCCTG GGGGAGAG CGCAGGCGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGMGAGAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:11554524-11554604 6.9e-06 61_[+3]_11 chrI:524513-524593 6.9e-06 28_[+3]_44 chrI:11782449-11782529 6.9e-06 33_[+3]_39 chrIII:7553221-7553301 1.6e-05 39_[+3]_33 chrII:12262690-12262770 1.6e-05 66_[+3]_6 chrIII:8567190-8567270 1.6e-05 65_[+3]_7 chrX:10647781-10647861 2.2e-05 24_[+3]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGMGAGAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGMGAGAG width=8 seqs=7 chrI:11554524-11554604 ( 62) GGCGAGAG 1 chrI:524513-524593 ( 29) GGCGAGAG 1 chrI:11782449-11782529 ( 34) GGCGAGAG 1 chrIII:7553221-7553301 ( 40) GGAGAGAG 1 chrII:12262690-12262770 ( 67) GGAGAGAG 1 chrIII:8567190-8567270 ( 66) GGAGAGAG 1 chrX:10647781-10647861 ( 25) GGGGAGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGMGAGAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.5704 E= 2.9e+003 -945 -945 226 -945 -945 -945 226 -945 62 95 -55 -945 -945 -945 226 -945 184 -945 -945 -945 -945 -945 226 -945 184 -945 -945 -945 -945 -945 226 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGMGAGAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 2.9e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.428571 0.428571 0.142857 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGMGAGAG MEME-3 regular expression -------------------------------------------------------------------------------- GG[AC]GAGAG -------------------------------------------------------------------------------- Time 15.82 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCGGCGG MEME-4 width = 8 sites = 7 llr = 75 E-value = 9.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCGGCGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::1 pos.-specific C 1:a:19:: probability G 9a:a91a9 matrix T :::::::: bits 2.3 *** * 2.0 *** * 1.8 *** * 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (15.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCGGCGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:13695820-13695900 22 4.11e-06 AGACGGTGGC GGCGGCGG CAACGCAGTG chrV:11198304-11198384 20 4.11e-06 GAAAGACAGT GGCGGCGG TCTCTCTATG chrX:2713165-2713245 46 4.11e-06 TGACATTTTA GGCGGCGG CAAAACTGCC chrI:12771644-12771724 12 7.97e-06 GCGCGGGCGA GGCGGGGG CGACCTTGGC chrI:14138257-14138337 41 1.67e-05 AAACCTTCGT GGCGCCGG GGAGGGTAAG chrX:8454474-8454554 47 1.67e-05 ACATACCTGT CGCGGCGG TTTTCGATAA chrX:10647781-10647861 37 2.22e-05 GGAGAGCGCA GGCGGCGA CCGTGAAGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:13695820-13695900 4.1e-06 21_[+4]_51 chrV:11198304-11198384 4.1e-06 19_[+4]_53 chrX:2713165-2713245 4.1e-06 45_[+4]_27 chrI:12771644-12771724 8e-06 11_[+4]_61 chrI:14138257-14138337 1.7e-05 40_[+4]_32 chrX:8454474-8454554 1.7e-05 46_[+4]_26 chrX:10647781-10647861 2.2e-05 36_[+4]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCGGCGG width=8 seqs=7 chrIV:13695820-13695900 ( 22) GGCGGCGG 1 chrV:11198304-11198384 ( 20) GGCGGCGG 1 chrX:2713165-2713245 ( 46) GGCGGCGG 1 chrI:12771644-12771724 ( 12) GGCGGGGG 1 chrI:14138257-14138337 ( 41) GGCGCCGG 1 chrX:8454474-8454554 ( 47) CGCGGCGG 1 chrX:10647781-10647861 ( 37) GGCGGCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.5704 E= 9.0e+003 -945 -63 203 -945 -945 -945 226 -945 -945 217 -945 -945 -945 -945 226 -945 -945 -63 203 -945 -945 195 -55 -945 -945 -945 226 -945 -96 -945 203 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 9.0e+003 0.000000 0.142857 0.857143 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.142857 0.857143 0.000000 0.000000 0.857143 0.142857 0.000000 0.000000 0.000000 1.000000 0.000000 0.142857 0.000000 0.857143 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCGG MEME-4 regular expression -------------------------------------------------------------------------------- GGCGGCGG -------------------------------------------------------------------------------- Time 19.41 secs. ******************************************************************************** ******************************************************************************** MOTIF ATCTTBWT MEME-5 width = 8 sites = 39 llr = 302 E-value = 1.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATCTTBWT MEME-5 Description -------------------------------------------------------------------------------- Simplified A a::::15: pos.-specific C ::9:141: probability G :::::3:: matrix T :a1a925a bits 2.3 2.0 1.8 **** * 1.6 **** * Relative 1.4 ***** * Entropy 1.1 ***** * (11.2 bits) 0.9 ***** * 0.7 ***** ** 0.5 ***** ** 0.2 ******** 0.0 -------- Multilevel ATCTTCTT consensus GA sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCTTBWT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:9549091-9549171 5 5.62e-05 GTTC ATCTTCTT CATCACAAAT chrI:9332652-9332732 10 5.62e-05 TTCGATACT ATCTTCTT ATTCGGGGCG chrV:8661452-8661532 56 5.62e-05 AATCATATTT ATCTTCAT TCATTGTCAC chrX:11606984-11607064 53 5.62e-05 TCTATTCCAC ATCTTCTT TCACCGTGCA chrII:2994781-2994861 8 5.62e-05 CAATTTG ATCTTCTT TTGAAAACGG chrIII:5964154-5964234 36 5.62e-05 ATCAATTGAC ATCTTCAT CTTCTGTACC chrX:11033786-11033866 46 5.62e-05 CTCACACTAT ATCTTCTT ATCTCGAGGT chrIV:3439509-3439589 49 5.62e-05 AGCGGCGCCG ATCTTCTT GAACGGAAGA chrII:5297902-5297982 40 5.62e-05 CAGTCAATCT ATCTTCAT CATCACATCG chrI:3673075-3673155 19 1.09e-04 TCACAACCGC ATCTTGTT GCAGAACACT chrII:11888345-11888425 20 1.09e-04 ACTTTTGACG ATCTTGAT TTGTGCAGCG chrX:13974871-13974951 25 1.09e-04 TCGATTAACG ATCTTGAT AGTGATAGCT chrI:14908053-14908133 37 1.09e-04 TTCTCAGAAC ATCTTGAT CTCTCGCCAG chrIV:3014795-3014875 3 1.09e-04 TT ATCTTGAT TTACGTGTTC chrX:2704058-2704138 49 1.09e-04 AAGATGCACC ATCTTGAT AAGTGGGAAC chrX:2041068-2041148 41 1.09e-04 TCCCGTGTTG ATCTTGAT AGGCGATCTC chrI:4322861-4322941 64 1.09e-04 TTTGTGGCTC ATCTTGAT TCATCTTGA chrIII:2973126-2973206 21 1.09e-04 TTAGATTCTT ATCTTGTT GATTGATCCA chrII:12980726-12980806 38 1.09e-04 ACAATTTAGC ATCTTGTT TATCTTGTAA chrIII:7301848-7301928 71 1.83e-04 CGAGATACTG ATCTTTTT AA chrIV:9618207-9618287 42 1.83e-04 CAAGATAACC ATCTTTTT TCTCTTTTTG chrX:17684971-17685051 34 1.83e-04 TATCTCATGT ATCTTTTT TTGCAATCGG chrII:11205929-11206009 14 1.83e-04 TCTCAATGCC ATCTTTTT CATTTTACAA chrV:6249317-6249397 72 1.83e-04 AGAGACACAA ATCTTTTT G chrII:9645117-9645197 41 1.83e-04 AAAGATGCAT ATCTTTTT ATGCATCTAG chrIV:10916303-10916383 23 1.83e-04 GCACCAACTG ATCTTTTT CTTTACTCCT chrI:13034855-13034935 5 2.53e-04 CTAC ATCTTAAT TTCGCGCACT chrI:11554524-11554604 31 2.53e-04 ACACGGGGAC ATCTTAAT TAGAGATACA chrX:6383045-6383125 33 2.53e-04 TGTCTACCTG ATCTTATT ACACTAAGCC chrX:6669536-6669616 60 2.53e-04 TTTTAGTAAA ATCTTAAT TTAAATCTTG chrIV:11903837-11903917 16 2.96e-04 TGCGCACCAT ATCTCCTT TTCAGATCTT chrIII:9991470-9991550 9 2.96e-04 AGATCGGT ATCTCCAT CTCAATTCGT chrI:11782449-11782529 50 2.96e-04 AGAGATATCC ATCTCCAT GCACCCACAA chrI:180242-180322 40 3.59e-04 CAACGATGTC ATCTTCCT CCTACTTCGA chrV:13866498-13866578 72 3.59e-04 ATCTAAGCCC ATCTTCCT C chrX:13012016-13012096 46 3.59e-04 TGACTCATCT ATCTCGAT TACCCACCTT chrX:14487483-14487563 31 4.35e-04 CCAAATTGCT ATCTCTTT CAAAAATCTG chrX:15310448-15310528 11 5.92e-04 AGTGCGCTAC ATTTTCAT CCGATGCTGG chrV:11779464-11779544 61 5.92e-04 TTCGCATGCC ATTTTCAT GTATCAATGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCTTBWT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:9549091-9549171 5.6e-05 4_[+5]_68 chrI:9332652-9332732 5.6e-05 9_[+5]_63 chrV:8661452-8661532 5.6e-05 55_[+5]_17 chrX:11606984-11607064 5.6e-05 52_[+5]_20 chrII:2994781-2994861 5.6e-05 7_[+5]_65 chrIII:5964154-5964234 5.6e-05 35_[+5]_37 chrX:11033786-11033866 5.6e-05 45_[+5]_27 chrIV:3439509-3439589 5.6e-05 48_[+5]_24 chrII:5297902-5297982 5.6e-05 39_[+5]_33 chrI:3673075-3673155 0.00011 18_[+5]_54 chrII:11888345-11888425 0.00011 19_[+5]_53 chrX:13974871-13974951 0.00011 24_[+5]_48 chrI:14908053-14908133 0.00011 36_[+5]_36 chrIV:3014795-3014875 0.00011 2_[+5]_70 chrX:2704058-2704138 0.00011 48_[+5]_24 chrX:2041068-2041148 0.00011 40_[+5]_32 chrI:4322861-4322941 0.00011 63_[+5]_9 chrIII:2973126-2973206 0.00011 20_[+5]_52 chrII:12980726-12980806 0.00011 37_[+5]_35 chrIII:7301848-7301928 0.00018 70_[+5]_2 chrIV:9618207-9618287 0.00018 41_[+5]_31 chrX:17684971-17685051 0.00018 33_[+5]_39 chrII:11205929-11206009 0.00018 13_[+5]_59 chrV:6249317-6249397 0.00018 71_[+5]_1 chrII:9645117-9645197 0.00018 40_[+5]_32 chrIV:10916303-10916383 0.00018 22_[+5]_50 chrI:13034855-13034935 0.00025 4_[+5]_68 chrI:11554524-11554604 0.00025 30_[+5]_42 chrX:6383045-6383125 0.00025 32_[+5]_40 chrX:6669536-6669616 0.00025 59_[+5]_13 chrIV:11903837-11903917 0.0003 15_[+5]_57 chrIII:9991470-9991550 0.0003 8_[+5]_64 chrI:11782449-11782529 0.0003 49_[+5]_23 chrI:180242-180322 0.00036 39_[+5]_33 chrV:13866498-13866578 0.00036 71_[+5]_1 chrX:13012016-13012096 0.00036 45_[+5]_27 chrX:14487483-14487563 0.00044 30_[+5]_42 chrX:15310448-15310528 0.00059 10_[+5]_62 chrV:11779464-11779544 0.00059 60_[+5]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCTTBWT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATCTTBWT width=8 seqs=39 chrX:9549091-9549171 ( 5) ATCTTCTT 1 chrI:9332652-9332732 ( 10) ATCTTCTT 1 chrV:8661452-8661532 ( 56) ATCTTCAT 1 chrX:11606984-11607064 ( 53) ATCTTCTT 1 chrII:2994781-2994861 ( 8) ATCTTCTT 1 chrIII:5964154-5964234 ( 36) ATCTTCAT 1 chrX:11033786-11033866 ( 46) ATCTTCTT 1 chrIV:3439509-3439589 ( 49) ATCTTCTT 1 chrII:5297902-5297982 ( 40) ATCTTCAT 1 chrI:3673075-3673155 ( 19) ATCTTGTT 1 chrII:11888345-11888425 ( 20) ATCTTGAT 1 chrX:13974871-13974951 ( 25) ATCTTGAT 1 chrI:14908053-14908133 ( 37) ATCTTGAT 1 chrIV:3014795-3014875 ( 3) ATCTTGAT 1 chrX:2704058-2704138 ( 49) ATCTTGAT 1 chrX:2041068-2041148 ( 41) ATCTTGAT 1 chrI:4322861-4322941 ( 64) ATCTTGAT 1 chrIII:2973126-2973206 ( 21) ATCTTGTT 1 chrII:12980726-12980806 ( 38) ATCTTGTT 1 chrIII:7301848-7301928 ( 71) ATCTTTTT 1 chrIV:9618207-9618287 ( 42) ATCTTTTT 1 chrX:17684971-17685051 ( 34) ATCTTTTT 1 chrII:11205929-11206009 ( 14) ATCTTTTT 1 chrV:6249317-6249397 ( 72) ATCTTTTT 1 chrII:9645117-9645197 ( 41) ATCTTTTT 1 chrIV:10916303-10916383 ( 23) ATCTTTTT 1 chrI:13034855-13034935 ( 5) ATCTTAAT 1 chrI:11554524-11554604 ( 31) ATCTTAAT 1 chrX:6383045-6383125 ( 33) ATCTTATT 1 chrX:6669536-6669616 ( 60) ATCTTAAT 1 chrIV:11903837-11903917 ( 16) ATCTCCTT 1 chrIII:9991470-9991550 ( 9) ATCTCCAT 1 chrI:11782449-11782529 ( 50) ATCTCCAT 1 chrI:180242-180322 ( 40) ATCTTCCT 1 chrV:13866498-13866578 ( 72) ATCTTCCT 1 chrX:13012016-13012096 ( 46) ATCTCGAT 1 chrX:14487483-14487563 ( 31) ATCTCTTT 1 chrX:15310448-15310528 ( 11) ATTTTCAT 1 chrV:11779464-11779544 ( 61) ATTTTCAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCTTBWT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.09119 E= 1.9e+004 184 -1193 -1193 -1193 -1193 -1193 -1193 178 -1193 210 -1193 -250 -1193 -1193 -1193 178 -1193 -79 -1193 158 -144 89 43 -50 73 -211 -1193 74 -1193 -1193 -1193 178 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCTTBWT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 1.9e+004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.948718 0.000000 0.051282 0.000000 0.000000 0.000000 1.000000 0.000000 0.128205 0.000000 0.871795 0.102564 0.410256 0.282051 0.205128 0.461538 0.051282 0.000000 0.487179 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCTTBWT MEME-5 regular expression -------------------------------------------------------------------------------- ATCTT[CGT][TA]T -------------------------------------------------------------------------------- Time 23.00 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:12678666-12678746 9.02e-01 80 chrIII:10306211-10306291 8.46e-01 80 chrIII:5119191-5119271 9.09e-01 80 chrIV:12531643-12531723 3.51e-01 80 chrIII:2974093-2974173 9.25e-01 80 chrII:2436946-2437026 1.44e-01 80 chrIII:5965523-5965603 1.13e-01 30_[+1(4.43e-05)]_42 chrII:12980726-12980806 3.63e-02 80 chrX:12154449-12154529 5.98e-01 80 chrX:6669536-6669616 1.81e-02 80 chrV:597056-597136 9.52e-01 80 chrV:14151030-14151110 3.98e-03 19_[+2(5.37e-05)]_53 chrIII:9110385-9110465 9.75e-02 39_[+2(3.12e-05)]_33 chrII:4982193-4982273 2.14e-02 18_[+2(4.92e-06)]_54 chrII:6419333-6419413 1.10e-01 80 chrI:5707562-5707642 2.10e-01 80 chrI:2842164-2842244 4.43e-02 80 chrI:9545553-9545633 4.67e-01 80 chrX:504635-504715 1.35e-02 80 chrX:6796001-6796081 4.16e-01 80 chrII:8417260-8417340 6.98e-02 80 chrIII:7551144-7551224 1.59e-01 80 chrX:15311158-15311238 1.35e-01 14_[+1(4.43e-05)]_58 chrII:5735917-5735997 5.01e-01 80 chrX:10245774-10245854 3.81e-01 80 chrII:11277065-11277145 8.16e-02 80 chrII:12991785-12991865 2.36e-01 80 chrV:1579998-1580078 5.42e-03 80 chrIV:9618980-9619060 3.37e-01 80 chrIV:11882662-11882742 3.80e-01 80 chrX:9456747-9456827 3.28e-02 80 chrI:7216232-7216312 7.77e-01 80 chrIII:2973126-2973206 2.31e-01 80 chrX:8454474-8454554 6.99e-03 46_[+4(1.67e-05)]_26 chrIII:5719261-5719341 6.77e-01 80 chrI:985250-985330 3.96e-01 80 chrIV:10916303-10916383 2.48e-01 80 chrX:5479046-5479126 8.92e-01 80 chrIV:5923252-5923332 8.42e-03 80 chrIV:3438171-3438251 5.14e-01 80 chrIII:6358894-6358974 3.22e-01 80 chrV:11779464-11779544 4.40e-01 80 chrIV:6492069-6492149 9.02e-01 80 chrII:9645117-9645197 1.17e-01 80 chrII:7238946-7239026 6.27e-01 80 chrI:4324185-4324265 9.47e-01 80 chrV:1567125-1567205 7.82e-01 80 chrI:11782449-11782529 3.83e-04 33_[+3(6.89e-06)]_39 chrIV:16396788-16396868 7.74e-01 80 chrII:7802017-7802097 1.04e-01 51_[+1(8.91e-05)]_21 chrIV:12540381-12540461 7.13e-02 80 chrIII:7645296-7645376 9.04e-01 80 chrI:32740-32820 4.77e-01 80 chrV:5426482-5426562 2.91e-01 80 chrX:11963855-11963935 3.60e-01 80 chrII:5297902-5297982 9.20e-02 39_[+5(5.62e-05)]_33 chrIV:6496241-6496321 2.98e-01 46_[+1(8.91e-05)]_26 chrII:9026483-9026563 2.40e-01 80 chrV:6254101-6254181 1.27e-02 80 chrII:4767802-4767882 7.52e-01 80 chrX:13012016-13012096 8.47e-02 80 chrX:16555877-16555957 1.00e-01 47_[+1(2.15e-05)]_25 chrII:12982111-12982191 3.49e-01 80 chrI:4322861-4322941 1.33e-02 80 chrI:6746570-6746650 4.81e-01 80 chrV:597952-598032 1.00e+00 80 chrII:11017033-11017113 6.31e-01 80 chrII:7803320-7803400 6.11e-01 80 chrX:2041068-2041148 5.04e-03 80 chrIII:9991470-9991550 6.19e-02 80 chrV:6249317-6249397 4.41e-03 80 chrX:6277439-6277519 2.09e-01 80 chrX:11726675-11726755 7.92e-01 80 chrV:8660651-8660731 3.42e-03 1_[+2(9.56e-06)]_71 chrI:9334578-9334658 8.15e-01 80 chrX:6671867-6671947 2.04e-01 80 chrX:2704058-2704138 1.63e-02 80 chrX:9086007-9086087 9.74e-01 80 chrII:9283863-9283943 7.87e-01 80 chrII:11076663-11076743 6.43e-03 80 chrII:11192503-11192583 4.33e-01 80 chrIV:3439509-3439589 2.61e-03 41_[+4(5.18e-05)]_31 chrIV:16400554-16400634 4.64e-01 80 chrX:11033786-11033866 2.35e-02 45_[+5(5.62e-05)]_27 chrX:2713165-2713245 4.50e-03 45_[+4(4.11e-06)]_27 chrX:6383045-6383125 4.36e-01 80 chrIV:3014795-3014875 1.11e-01 80 chrX:12511541-12511621 1.95e-01 80 chrIV:11211673-11211753 7.60e-01 80 chrII:7808304-7808384 6.11e-01 80 chrIV:13716926-13717006 6.54e-01 80 chrIV:15651010-15651090 1.85e-01 80 chrI:12771644-12771724 3.03e-04 [+4(5.62e-05)]_3_[+4(7.97e-06)]_61 chrIV:13719037-13719117 2.55e-02 80 chrIV:3440988-3441068 7.66e-02 80 chrX:9512640-9512720 1.10e-01 80 chrIV:5082043-5082123 2.96e-04 36_[+2(4.92e-06)]_36 chrI:2844542-2844622 2.19e-02 57_[+1(6.04e-05)]_15 chrV:11198304-11198384 6.91e-03 19_[+4(4.11e-06)]_53 chrIII:2633160-2633240 8.82e-01 80 chrII:7930854-7930934 3.14e-02 80 chrI:14138257-14138337 2.58e-03 40_[+4(1.67e-05)]_32 chrII:1214771-1214851 8.42e-02 80 chrX:14487483-14487563 6.47e-01 80 chrIII:5964154-5964234 2.44e-01 35_[+5(5.62e-05)]_37 chrI:6079057-6079137 1.08e-01 71_[+1(2.15e-05)]_1 chrV:4505593-4505673 2.23e-01 80 chrX:14576083-14576163 3.60e-01 80 chrV:8669013-8669093 1.34e-03 46_[+2(4.92e-06)]_26 chrV:13333562-13333642 4.54e-01 80 chrX:8858810-8858890 1.29e-01 54_[+1(2.15e-05)]_18 chrII:7799836-7799916 7.65e-04 48_[+4(5.18e-05)]_24 chrX:5702818-5702898 1.85e-01 80 chrI:524513-524593 8.05e-03 28_[+3(6.89e-06)]_44 chrI:2833153-2833233 6.87e-04 4_[+4(7.92e-05)]_68 chrX:16552003-16552083 2.68e-01 80 chrX:9228568-9228648 1.88e-01 80 chrIV:11903837-11903917 1.15e-01 80 chrV:14506857-14506937 2.24e-03 2_[+2(5.97e-05)]_70 chrIV:2321713-2321793 7.51e-01 80 chrV:8045107-8045187 3.03e-02 14_[+1(6.04e-05)]_58 chrII:6821261-6821341 6.62e-01 80 chrV:5523417-5523497 3.36e-02 80 chrI:527317-527397 4.95e-01 80 chrI:7216744-7216824 6.15e-01 80 chrIV:9615672-9615752 5.28e-01 80 chrX:6092650-6092730 3.06e-03 66_[+1(2.15e-05)]_6 chrX:12172730-12172810 9.65e-01 80 chrIV:1547306-1547386 2.74e-02 4_[+1(4.43e-05)]_68 chrX:12671808-12671888 1.02e-01 41_[+1(2.15e-05)]_31 chrIII:12134844-12134924 4.74e-01 80 chrI:2967777-2967857 1.51e-02 80 chrIV:9790894-9790974 1.32e-01 80 chrV:13866498-13866578 5.56e-04 38_[+1(6.04e-05)]_34 chrIII:7299641-7299721 2.77e-01 80 chrII:7534524-7534604 5.92e-01 80 chrX:9406105-9406185 4.72e-01 80 chrII:9064613-9064693 3.96e-01 80 chrIV:16397974-16398054 9.33e-01 80 chrX:2145820-2145900 9.11e-05 42_[+2(4.92e-06)]_13_[+1(8.91e-05)]_\ 9 chrX:10302117-10302197 6.16e-01 80 chrI:11554524-11554604 2.27e-04 61_[+3(6.89e-06)]_11 chrX:14500476-14500556 2.00e-02 80 chrX:17424414-17424494 3.62e-01 80 chrIII:8577681-8577761 2.09e-02 51_[+1(2.15e-05)]_21 chrX:13004873-13004953 8.41e-01 80 chrIV:1911321-1911401 6.32e-01 80 chrX:10647781-10647861 1.05e-03 24_[+3(2.20e-05)]_4_[+4(2.22e-05)]_\ 36 chrIII:6364479-6364559 5.29e-01 80 chrX:13120092-13120172 3.88e-01 80 chrX:15310448-15310528 1.33e-02 80 chrII:10210172-10210252 1.90e-01 80 chrI:5688013-5688093 5.41e-01 80 chrIV:9608000-9608080 9.28e-01 80 chrX:13389011-13389091 3.67e-02 18_[+2(4.78e-05)]_54 chrX:13736827-13736907 4.21e-01 80 chrI:14908053-14908133 1.22e-01 80 chrV:13389558-13389638 3.00e-04 26_[+2(7.60e-05)]_46 chrX:772333-772413 8.61e-01 80 chrI:180242-180322 7.98e-02 80 chrX:13974871-13974951 1.34e-01 80 chrV:8652283-8652363 2.75e-01 80 chrI:6733392-6733472 8.10e-01 80 chrV:11197132-11197212 9.50e-01 80 chrV:13000697-13000777 3.75e-01 80 chrII:4759984-4760064 7.72e-01 80 chrI:11205666-11205746 3.64e-02 80 chrX:13745703-13745783 5.77e-01 80 chrIII:4011621-4011701 2.34e-01 80 chrI:8986045-8986125 1.11e-01 80 chrII:11205929-11206009 1.29e-01 80 chrI:13034855-13034935 2.67e-01 80 chrI:3719499-3719579 2.35e-01 80 chrIII:3478978-3479058 8.61e-02 80 chrIII:8567190-8567270 1.88e-02 65_[+3(1.56e-05)]_7 chrX:2216845-2216925 1.36e-04 25_[+2(9.56e-06)]_47 chrV:10860781-10860861 1.93e-01 80 chrII:11888345-11888425 1.25e-03 [+1(2.15e-05)]_72 chrII:11020841-11020921 2.56e-01 80 chrI:533276-533356 5.87e-01 80 chrII:8338963-8339043 2.82e-01 80 chrI:14809494-14809574 2.48e-01 80 chrI:10403898-10403978 1.80e-01 80 chrV:19350418-19350498 2.78e-01 80 chrIV:13695820-13695900 1.42e-03 18_[+4(4.11e-06)]_54 chrV:538487-538567 2.55e-01 80 chrV:4361715-4361795 8.79e-01 80 chrX:5061961-5062041 1.33e-01 80 chrI:6996084-6996164 8.99e-02 80 chrV:6458427-6458507 2.57e-01 80 chrIV:14676006-14676086 1.76e-02 80 chrX:2709308-2709388 2.12e-01 80 chrII:12262690-12262770 8.94e-02 66_[+3(1.56e-05)]_6 chrX:17684971-17685051 1.40e-03 48_[+2(1.42e-05)]_24 chrII:4573271-4573351 2.03e-03 36_[+2(4.92e-06)]_36 chrIV:13013361-13013441 6.67e-01 80 chrII:9891867-9891947 4.23e-02 30_[+1(8.91e-05)]_42 chrX:17033597-17033677 2.99e-02 80 chrX:5137822-5137902 7.06e-01 80 chrIII:7553221-7553301 1.20e-02 39_[+3(1.56e-05)]_33 chrIV:12130573-12130653 4.33e-01 80 chrII:2994781-2994861 3.08e-01 7_[+5(5.62e-05)]_65 chrII:13029446-13029526 2.21e-02 80 chrIV:13699403-13699483 5.26e-01 80 chrI:11791614-11791694 8.63e-01 80 chrX:10304272-10304352 1.00e+00 80 chrX:2209736-2209816 1.95e-01 80 chrI:9539496-9539576 2.99e-01 80 chrV:4628558-4628638 3.75e-02 62_[+1(2.15e-05)]_10 chrV:13391026-13391106 4.54e-01 80 chrV:8668366-8668446 1.72e-01 80 chrII:13293608-13293688 9.52e-01 80 chrII:11794522-11794602 3.24e-01 80 chrX:11606984-11607064 4.32e-02 52_[+5(5.62e-05)]_20 chrI:7715992-7716072 8.49e-01 80 chrII:4986302-4986382 8.86e-01 80 chrV:1579029-1579109 6.95e-02 80 chrII:15213903-15213983 9.17e-01 80 chrI:14810168-14810248 8.76e-01 80 chrIII:5836374-5836454 3.38e-01 80 chrX:5123202-5123282 8.87e-01 80 chrIII:13657451-13657531 1.60e-02 80 chrX:9667574-9667654 1.75e-01 80 chrX:8554148-8554228 5.90e-02 80 chrIV:13704178-13704258 3.56e-01 80 chrII:6835673-6835753 8.40e-01 80 chrV:8661452-8661532 2.22e-01 55_[+5(5.62e-05)]_17 chrIII:13659154-13659234 1.88e-01 80 chrIII:3621567-3621647 7.66e-03 29_[+2(9.56e-06)]_43 chrV:11774091-11774171 9.03e-02 80 chrI:3673075-3673155 2.70e-01 80 chrV:13376030-13376110 4.11e-02 61_[+1(6.04e-05)]_11 chrX:9547479-9547559 1.93e-01 80 chrI:528012-528092 9.47e-01 80 chrX:4961836-4961916 3.24e-01 80 chrIV:9618207-9618287 1.08e-02 80 chrI:9332652-9332732 5.07e-02 9_[+5(5.62e-05)]_63 chrX:5828225-5828305 9.75e-02 65_[+2(4.78e-05)]_7 chrX:9549091-9549171 1.21e-01 4_[+5(5.62e-05)]_68 chrX:6029197-6029277 6.64e-01 80 chrII:10506124-10506204 1.27e-03 22_[+2(5.37e-05)]_50 chrV:801822-801902 1.09e-01 80 chrIII:6132272-6132352 5.86e-01 80 chrIII:7301848-7301928 7.70e-02 80 chrIII:3797255-3797335 2.97e-01 80 chrX:15327338-15327418 6.54e-02 80 chrII:11043995-11044075 3.15e-01 3_[+1(8.91e-05)]_69 chrV:1618616-1618696 3.15e-01 80 chrII:301204-301284 8.86e-01 80 chrIII:7554893-7554973 8.82e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************