******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-14.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII:2983191-2983271 1.0000 80 chrV:11855132-11855212 1.0000 80 chrII:14321367-14321447 1.0000 80 chrIV:7452715-7452795 1.0000 80 chrI:788224-788304 1.0000 80 chrX:12082914-12082994 1.0000 80 chrII:3527629-3527709 1.0000 80 chrII:12657793-12657873 1.0000 80 chrIII:4070424-4070504 1.0000 80 chrX:12184551-12184631 1.0000 80 chrII:15254163-15254243 1.0000 80 chrIII:5642810-5642890 1.0000 80 chrIV:8607122-8607202 1.0000 80 chrIII:6078103-6078183 1.0000 80 chrIV:2052546-2052626 1.0000 80 chrI:784029-784109 1.0000 80 chrI:4976305-4976385 1.0000 80 chrV:12025608-12025688 1.0000 80 chrX:1060908-1060988 1.0000 80 chrIII:6013230-6013310 1.0000 80 chrV:20696930-20697010 1.0000 80 chrX:4620178-4620258 1.0000 80 chrIII:10397062-10397142 1.0000 80 chrV:4357523-4357603 1.0000 80 chrI:8119350-8119430 1.0000 80 chrIII:11935244-11935324 1.0000 80 chrI:8204614-8204694 1.0000 80 chrX:14028769-14028849 1.0000 80 chrIV:7840060-7840140 1.0000 80 chrIV:16036506-16036586 1.0000 80 chrIII:11359546-11359626 1.0000 80 chrII:11330476-11330556 1.0000 80 chrX:9956229-9956309 1.0000 80 chrIV:4586127-4586207 1.0000 80 chrIII:12082144-12082224 1.0000 80 chrIV:13028104-13028184 1.0000 80 chrII:11333227-11333307 1.0000 80 chrIII:12060247-12060327 1.0000 80 chrIV:4702206-4702286 1.0000 80 chrI:423976-424056 1.0000 80 chrIV:11872046-11872126 1.0000 80 chrII:9947107-9947187 1.0000 80 chrX:4574017-4574097 1.0000 80 chrIII:8510010-8510090 1.0000 80 chrIV:10505171-10505251 1.0000 80 chrV:16752397-16752477 1.0000 80 chrV:5016894-5016974 1.0000 80 chrII:7814397-7814477 1.0000 80 chrX:7713028-7713108 1.0000 80 chrII:12665225-12665305 1.0000 80 chrIV:8360169-8360249 1.0000 80 chrV:13254887-13254967 1.0000 80 chrIII:3232646-3232726 1.0000 80 chrIV:10347722-10347802 1.0000 80 chrII:12438631-12438711 1.0000 80 chrV:15610551-15610631 1.0000 80 chrI:814032-814112 1.0000 80 chrII:6342366-6342446 1.0000 80 chrI:8349465-8349545 1.0000 80 chrIII:7708828-7708908 1.0000 80 chrII:1323389-1323469 1.0000 80 chrII:10990718-10990798 1.0000 80 chrV:13111750-13111830 1.0000 80 chrII:11567493-11567573 1.0000 80 chrII:8589398-8589478 1.0000 80 chrX:2802567-2802647 1.0000 80 chrII:10373739-10373819 1.0000 80 chrV:1383642-1383722 1.0000 80 chrII:9306929-9307009 1.0000 80 chrIV:3859280-3859360 1.0000 80 chrII:10068551-10068631 1.0000 80 chrIII:6220307-6220387 1.0000 80 chrV:16553096-16553176 1.0000 80 chrIII:10016836-10016916 1.0000 80 chrII:10369777-10369857 1.0000 80 chrIV:1687305-1687385 1.0000 80 chrIII:4542497-4542577 1.0000 80 chrI:2466404-2466484 1.0000 80 chrII:9255123-9255203 1.0000 80 chrI:3786244-3786324 1.0000 80 chrV:7983712-7983792 1.0000 80 chrII:14900407-14900487 1.0000 80 chrX:12210867-12210947 1.0000 80 chrI:2487854-2487934 1.0000 80 chrIV:12845790-12845870 1.0000 80 chrI:5448449-5448529 1.0000 80 chrIII:13064783-13064863 1.0000 80 chrI:1628837-1628917 1.0000 80 chrIII:11848452-11848532 1.0000 80 chrII:10830547-10830627 1.0000 80 chrIII:4068153-4068233 1.0000 80 chrX:5896071-5896151 1.0000 80 chrIV:1906950-1907030 1.0000 80 chrII:1338338-1338418 1.0000 80 chrM:5139-5219 1.0000 80 chrIV:15816380-15816460 1.0000 80 chrIII:4105059-4105139 1.0000 80 chrX:17003824-17003904 1.0000 80 chrV:11641614-11641694 1.0000 80 chrV:13170589-13170669 1.0000 80 chrIII:10436197-10436277 1.0000 80 chrI:13495235-13495315 1.0000 80 chrIV:15561470-15561550 1.0000 80 chrI:10469092-10469172 1.0000 80 chrV:14443604-14443684 1.0000 80 chrIV:6648714-6648794 1.0000 80 chrI:10175360-10175440 1.0000 80 chrX:7655658-7655738 1.0000 80 chrX:933037-933117 1.0000 80 chrII:8997680-8997760 1.0000 80 chrX:14649431-14649511 1.0000 80 chrIV:2193078-2193158 1.0000 80 chrII:8137430-8137510 1.0000 80 chrX:13187446-13187526 1.0000 80 chrV:13409240-13409320 1.0000 80 chrII:9838568-9838648 1.0000 80 chrII:3055733-3055813 1.0000 80 chrV:14425288-14425368 1.0000 80 chrIV:1845128-1845208 1.0000 80 chrIII:5720642-5720722 1.0000 80 chrV:6658914-6658994 1.0000 80 chrX:2730030-2730110 1.0000 80 chrIII:10811216-10811296 1.0000 80 chrX:16484799-16484879 1.0000 80 chrI:7031496-7031576 1.0000 80 chrI:1598522-1598602 1.0000 80 chrIV:2656594-2656674 1.0000 80 chrIII:3322479-3322559 1.0000 80 chrV:19356903-19356983 1.0000 80 chrI:3307644-3307724 1.0000 80 chrV:4552870-4552950 1.0000 80 chrIII:11093624-11093704 1.0000 80 chrIII:7812581-7812661 1.0000 80 chrI:788425-788505 1.0000 80 chrII:9760626-9760706 1.0000 80 chrII:6838430-6838510 1.0000 80 chrII:7894882-7894962 1.0000 80 chrV:14491290-14491370 1.0000 80 chrII:8951403-8951483 1.0000 80 chrI:13422623-13422703 1.0000 80 chrV:14688967-14689047 1.0000 80 chrI:4224859-4224939 1.0000 80 chrX:12183184-12183264 1.0000 80 chrV:9561940-9562020 1.0000 80 chrI:895976-896056 1.0000 80 chrIV:7156402-7156482 1.0000 80 chrIV:11605088-11605168 1.0000 80 chrIII:5999453-5999533 1.0000 80 chrI:879860-879940 1.0000 80 chrII:10662855-10662935 1.0000 80 chrIV:7830292-7830372 1.0000 80 chrIV:15021057-15021137 1.0000 80 chrX:8566435-8566515 1.0000 80 chrV:13016975-13017055 1.0000 80 chrV:311656-311736 1.0000 80 chrI:2464695-2464775 1.0000 80 chrV:20424979-20425059 1.0000 80 chrV:7746048-7746128 1.0000 80 chrV:16022772-16022852 1.0000 80 chrII:1134609-1134689 1.0000 80 chrX:12883930-12884010 1.0000 80 chrII:12010090-12010170 1.0000 80 chrIII:8265897-8265977 1.0000 80 chrI:10469297-10469377 1.0000 80 chrIII:6537386-6537466 1.0000 80 chrIII:9310059-9310139 1.0000 80 chrIII:4505870-4505950 1.0000 80 chrIII:10856989-10857069 1.0000 80 chrI:9846383-9846463 1.0000 80 chrX:2731982-2732062 1.0000 80 chrX:4123451-4123531 1.0000 80 chrII:13460500-13460580 1.0000 80 chrII:4506779-4506859 1.0000 80 chrV:7820432-7820512 1.0000 80 chrIII:13486082-13486162 1.0000 80 chrII:5303872-5303952 1.0000 80 chrIV:14032782-14032862 1.0000 80 chrX:14970447-14970527 1.0000 80 chrI:7951772-7951852 1.0000 80 chrIII:4404499-4404579 1.0000 80 chrIII:6551505-6551585 1.0000 80 chrIV:13533202-13533282 1.0000 80 chrIV:385242-385322 1.0000 80 chrII:5691550-5691630 1.0000 80 chrX:601487-601567 1.0000 80 chrIII:13293273-13293353 1.0000 80 chrII:8811189-8811269 1.0000 80 chrIII:9703931-9704011 1.0000 80 chrIV:16663783-16663863 1.0000 80 chrIII:4037462-4037542 1.0000 80 chrIII:6431890-6431970 1.0000 80 chrI:7375028-7375108 1.0000 80 chrX:1118897-1118977 1.0000 80 chrI:6284758-6284838 1.0000 80 chrII:5512095-5512175 1.0000 80 chrIV:1824177-1824257 1.0000 80 chrIII:13340670-13340750 1.0000 80 chrIV:12012567-12012647 1.0000 80 chrV:20832857-20832937 1.0000 80 chrII:5724990-5725070 1.0000 80 chrI:8692577-8692657 1.0000 80 chrX:2013078-2013158 1.0000 80 chrII:4456258-4456338 1.0000 80 chrX:2807543-2807623 1.0000 80 chrX:13318742-13318822 1.0000 80 chrX:4307699-4307779 1.0000 80 chrIII:5564991-5565071 1.0000 80 chrV:20879460-20879540 1.0000 80 chrIII:10811416-10811496 1.0000 80 chrII:14940495-14940575 1.0000 80 chrIII:671190-671270 1.0000 80 chrII:11072680-11072760 1.0000 80 chrII:759903-759983 1.0000 80 chrII:7281939-7282019 1.0000 80 chrX:7651374-7651454 1.0000 80 chrIV:13487150-13487230 1.0000 80 chrI:9097991-9098071 1.0000 80 chrV:11375229-11375309 1.0000 80 chrIII:10284372-10284452 1.0000 80 chrIV:9642159-9642239 1.0000 80 chrI:3176522-3176602 1.0000 80 chrV:1307408-1307488 1.0000 80 chrIV:8145351-8145431 1.0000 80 chrII:13964526-13964606 1.0000 80 chrV:11933350-11933430 1.0000 80 chrX:3126302-3126382 1.0000 80 chrII:11753132-11753212 1.0000 80 chrX:1018649-1018729 1.0000 80 chrX:13143548-13143628 1.0000 80 chrII:10804507-10804587 1.0000 80 chrIII:11936082-11936162 1.0000 80 chrIII:9133734-9133814 1.0000 80 chrI:6823349-6823429 1.0000 80 chrI:933476-933556 1.0000 80 chrV:12026924-12027004 1.0000 80 chrX:15630818-15630898 1.0000 80 chrV:126747-126827 1.0000 80 chrIII:6214407-6214487 1.0000 80 chrIV:11310782-11310862 1.0000 80 chrIV:7453909-7453989 1.0000 80 chrIII:2535343-2535423 1.0000 80 chrI:6810514-6810594 1.0000 80 chrI:6341981-6342061 1.0000 80 chrV:9964468-9964548 1.0000 80 chrX:9737907-9737987 1.0000 80 chrI:9429566-9429646 1.0000 80 chrIII:9583274-9583354 1.0000 80 chrX:1601680-1601760 1.0000 80 chrIII:10123779-10123859 1.0000 80 chrII:10202419-10202499 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ceh-14/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-14.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.279 C 0.215 G 0.226 T 0.28 Background letter frequencies (from file dataset with add-one prior applied): A 0.279 C 0.215 G 0.226 T 0.28 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF RRRGARAR MEME-1 width = 8 sites = 99 llr = 647 E-value = 5.4e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif RRRGARAR MEME-1 Description -------------------------------------------------------------------------------- Simplified A 4573a595 pos.-specific C :::::::: probability G 6537:515 matrix T :::::::: bits 2.2 2.0 1.8 * 1.6 * Relative 1.3 * * Entropy 1.1 * ****** (9.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGAGAGAG consensus AAGA A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRRGARAR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:1018649-1018729 48 1.28e-05 agagagagaa ggagagag tgatggggaa chrII:4456258-4456338 53 1.28e-05 GTAGGCAGAC GGAGAGAG ACACTCACGC chrIV:1824177-1824257 67 1.28e-05 TTGGCAAGGA GGAGAGAG GGAGCA chrIV:13533202-13533282 25 2.86e-05 GTCAAATCGA GAAGAGAG AAACGGGAGA chrV:9561940-9562020 65 2.86e-05 GTGGAGTGAG GAAGAGAG AAGAGAAG chrII:6838430-6838510 54 2.86e-05 TTGATGTGAC GAAGAGAG CGCGGACGGG chrI:3176522-3176602 71 6.02e-05 AAAGAAAATT GGAGAAAG TT chrII:4506779-4506859 62 6.02e-05 TCGAGTGAGT GGAGAGAA TACTACCACA chrV:13254887-13254967 17 6.02e-05 AGAGTGTTAC GGAGAGAA CCCAAGAGAC chrV:4357523-4357603 6 6.02e-05 CGAAG GGAGAAAG CACTTTAATC chrX:12184551-12184631 2 6.02e-05 T GGAGAGAA ACTAAAGAAA chrIII:10284372-10284452 57 7.06e-05 GAATTCGATG GGGGAGAG GGGGCTCGGA chrI:13495235-13495315 71 7.06e-05 Aagagagaga ggggagag ac chrX:17003824-17003904 61 7.06e-05 TGGAAAGGGG GGGGAGAG TTTGAGGGGA chrIII:4068153-4068233 36 7.06e-05 AAGAAGAGGC GGGGAGAG GGGAGTTAAT chrV:1383642-1383722 19 7.06e-05 AGTGAAGCGG GGGGAGAG GTCCGCAAAC chrV:15610551-15610631 33 7.06e-05 TGGAGAGGAG GGGGAGAG GAGCGGTCAA chrI:6810514-6810594 66 1.10e-04 AATAGACTAA GAAGAGAA GAGACGT chrV:1307408-1307488 33 1.10e-04 ATATTATTGA GAAGAAAG AGATTCAGAT chrIV:15561470-15561550 21 1.10e-04 ACGCGATGAG GAAGAGAA AAGGGGGAAG chrIII:4542497-4542577 25 1.10e-04 TTAAATGCTC GAAGAGAA GAAAAAGAAT chrX:4620178-4620258 35 1.10e-04 aggagacgag gaagagaa gGGCGTAGGA chrIV:7452715-7452795 18 1.10e-04 AAGAAATAGT GAAGAAAG AAAAAGGAGT chrIII:10016836-10016916 35 1.42e-04 ggggactcgt gaggagag tgtgagtgCG chrII:8589398-8589478 41 1.42e-04 TGAAAGAAGA GGAGAAAA TTGAATTAGC chrII:11333227-11333307 4 1.42e-04 CTC GGAGAAAA CACACTACTT chrI:788224-788304 46 1.42e-04 AAGAGAGAAG GAGGAGAG CCATTTTGAA chrIV:8607122-8607202 20 1.68e-04 TCTCGGTATT GGGGAAAG AAATTAATTT chrX:15630818-15630898 32 2.07e-04 AAAGCAAAGC GAAGAAAA AAGTCATGGC chrII:759903-759983 72 2.07e-04 GGGCTTTTCG Gaagaaaa a chrII:12010090-12010170 61 2.07e-04 TTGCACTTTT GAAGAAAA TTGGAAAGAC chrII:1134609-1134689 42 2.07e-04 TATTTTTCTC GAAGAAAA CGATACAACG chrI:879860-879940 40 2.07e-04 ACACCTCCAC AGAGAGAG TGTATGAGCA chrIII:10811216-10811296 50 2.07e-04 GTATCTTCTA GAAGAAAA TTTCAAAAAT chrIV:1845128-1845208 34 2.07e-04 ATAAACAGAC AGAGAGAG GGTGAAAAAT chrI:10469092-10469172 1 2.07e-04 . GAAGAAAA CGATACAACG chrII:6342366-6342446 6 2.07e-04 AGTGG GAAGAAAA CGAGAAGATT chrIV:4702206-4702286 4 2.07e-04 CTC GAAGAAAA CGATACAACG chrI:8119350-8119430 18 2.07e-04 GATGAGGGAA AGAGAGAG GAAGCGGGAA chrIV:9642159-9642239 26 2.39e-04 TAGAGATTAT GAGGAAAG CAGGTGAAGG chrII:12438631-12438711 2 2.39e-04 T GAGGAGAA ATACGTCGAG chrV:12026924-12027004 16 2.74e-04 GCagaaagag aaagagag tgagtgagag chrIII:11093624-11093704 46 2.74e-04 ACCGATTCCT GGGGAAAA TGAGATCTCA chrII:5512095-5512175 51 3.29e-04 TTTTTTGCAT AGAGAAAG TAGAGAAAAA chrIII:13486082-13486162 64 3.29e-04 CATTTTCTTT AGAGAGAA ACACTAATT chrI:1598522-1598602 46 3.29e-04 GGCTCACATG AGAGAGAA AAAGCTCGCG chrV:6658914-6658994 46 3.29e-04 GGTGGAAACG AGAGAAAG CAAGGCACAT chrIV:11310782-11310862 3 3.62e-04 AA GAGGAAAA GTGCGCGGCG chrIII:6013230-6013310 4 3.62e-04 TTC GAGGAAAA TAGCGTTTGG chrX:12883930-12884010 60 4.29e-04 ACAAAGCTGC AAAGAAAG GTGATTAGGT chrIV:10505171-10505251 44 4.29e-04 AATTAAATGT GAAAAGAG GTCTCCAACG chrIII:2983191-2983271 44 4.29e-04 CCAGGAGGGG GAAAAGAG ATTAAAATGG chrX:2807543-2807623 31 5.08e-04 TGAGGAATTA AGAGAAAA TGAGCACGAG chrX:601487-601567 14 5.08e-04 GTCTTCAACT AAGGAGAG GCAGCAGCTC chrI:895976-896056 70 5.08e-04 GCCCCTGCGC AGAGAAAA ACA chrI:5448449-5448529 46 5.08e-04 AAATAGAGAA AAGGAGAG GGAGCAGAGA chrII:10068551-10068631 12 5.08e-04 GGGAGAAGCA GGAAAAAG TGGAAAATTT chrI:8349465-8349545 12 5.08e-04 TGTGGTAATG GGAAAAAG CATGCGCCGT chrIV:2052546-2052626 44 5.08e-04 CGAAAAAACG AGAGAAAA TAGTGGGACC chrIII:9310059-9310139 66 5.53e-04 ATCAGGAACA AGGGAAAG ATTAATT chrV:7746048-7746128 60 5.53e-04 AAAGTCTCGC GGGAAGAG CGCGTAAGAT chrIII:3322479-3322559 22 5.53e-04 CTCAAAAACC GGGAAGAG GGCAGGTAAG chrV:13111750-13111830 64 5.53e-04 GACGGGCGGT GGGAAGAG GACGATGAG chrV:126747-126827 2 6.30e-04 a aaaGAAAA ACAAAAAAAA chrI:9097991-9098071 9 6.30e-04 AGAGAATT AAAGAAAA ATATGAAAAC chrIV:13487150-13487230 53 6.30e-04 CAAGATCTAC GAAAAGAA GATCTACGAA chrIII:13340670-13340750 60 6.30e-04 CGTCTAATTA GAAAAAAG CAATTAAGCA chrX:2730030-2730110 27 6.30e-04 GGGTAATATG AAAGAAAA TTTAATTAGA chrX:7655658-7655738 41 6.30e-04 GCCGCGCGTG AAAGAAAA GGGGAGACCT chrIV:2656594-2656674 13 7.09e-04 AAAGTTGAGT GAGAAGAG CACAGGAAAG chrX:1060908-1060988 6 7.61e-04 TCCGT AGGGAAAA ATAATTATTC chrII:12657793-12657873 30 7.61e-04 CCATAAAAAT AGGGAAAA TGAGCTGGAA chrII:8137430-8137510 47 8.20e-04 CAGATTCGCT GAAAAAAA ATGAAGTTGT chrIV:7453909-7453989 15 8.83e-04 AAGGATGTAA GAGAAGAA GAAGAAGCAA chrX:7651374-7651454 28 8.83e-04 AGGCGGACGG GAGAAGAA GCAGGGCAAG chrII:1338338-1338418 69 8.83e-04 TAGAGACGCA GAGAAGAA TAAT chrII:10830547-10830627 5 9.40e-04 ACAA AAAAAGAG GCGGAGAATT chrV:7983712-7983792 29 9.40e-04 AAAATTAATA AAAAAGAG TAAAATTCCA chrII:14940495-14940575 39 1.01e-03 CTTTTGTCAC GGAGAAGG ACACGTATTC chrX:1118897-1118977 49 1.01e-03 GCAGATGGGT AGAAAAAG GAAACATCAA chrIV:12012567-12012647 6 1.06e-03 GAGAG AGGAAGAG ACGCAGATGA chrX:14649431-14649511 36 1.06e-03 GTGGGGCGAT GGGGAGGG CATACTGCTA chrIV:16036506-16036586 62 1.06e-03 CAATTTCGGA GGGGAGGG GGGGAAGCCC chrIII:3232646-3232726 30 1.15e-03 AAAAATTTTA AAAAAGAA GAGGTATTTC chrII:7281939-7282019 61 1.23e-03 AATTAGGCTT AGAAAAAA CTAATTGAAT chrV:14443604-14443684 11 1.23e-03 AAGAAAATCT AGAAAAAA TTTCACGCTC chrI:8204614-8204694 8 1.29e-03 TAGGAAT AGGAAAAG CTCGATGGAT chrI:8692577-8692657 1 1.36e-03 . AAAAAAAA TTTCCACGGC chrV:16752397-16752477 69 1.43e-03 GCCGATGAAG GAGGAGGA AGCA chrII:14321367-14321447 17 1.48e-03 ATCAAAACAC AGGAAAaa tgaattaatt chrX:14970447-14970527 11 1.53e-03 AAATGAAATC AGAGAGGA GGTGGCAAAG chrIII:8265897-8265977 1 1.58e-03 . AAGAAAAA CTGAGTGATG chrV:11933350-11933430 48 1.64e-03 GACCTCACTA AAAGAGGA ATTGTGACTT chrIII:6551505-6551585 3 1.64e-03 AC GAAAAGGG GAGATACGAA chrIII:10436197-10436277 73 1.64e-03 GAGGCCCCAC GAAAAGGG chrIII:11848452-11848532 73 1.70e-03 GCCCCACCAC GGAAAAGG chrII:15254163-15254243 60 1.74e-03 CCACCCAGTG AGGGAAGG CGACGACAGA chrII:9306929-9307009 70 1.81e-03 GGATGGATTG GGAGGGAG GAG chrI:7951772-7951852 52 2.00e-03 AGGCAAGCAG GGAGGGAA GCTGGGCTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRRGARAR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1018649-1018729 1.3e-05 47_[+1]_25 chrII:4456258-4456338 1.3e-05 52_[+1]_20 chrIV:1824177-1824257 1.3e-05 66_[+1]_6 chrIV:13533202-13533282 2.9e-05 24_[+1]_48 chrV:9561940-9562020 2.9e-05 64_[+1]_8 chrII:6838430-6838510 2.9e-05 53_[+1]_19 chrI:3176522-3176602 6e-05 70_[+1]_2 chrII:4506779-4506859 6e-05 61_[+1]_11 chrV:13254887-13254967 6e-05 16_[+1]_56 chrV:4357523-4357603 6e-05 5_[+1]_67 chrX:12184551-12184631 6e-05 1_[+1]_71 chrIII:10284372-10284452 7.1e-05 56_[+1]_16 chrI:13495235-13495315 7.1e-05 70_[+1]_2 chrX:17003824-17003904 7.1e-05 60_[+1]_12 chrIII:4068153-4068233 7.1e-05 35_[+1]_37 chrV:1383642-1383722 7.1e-05 18_[+1]_54 chrV:15610551-15610631 7.1e-05 32_[+1]_40 chrI:6810514-6810594 0.00011 65_[+1]_7 chrV:1307408-1307488 0.00011 32_[+1]_40 chrIV:15561470-15561550 0.00011 20_[+1]_52 chrIII:4542497-4542577 0.00011 24_[+1]_48 chrX:4620178-4620258 0.00011 34_[+1]_38 chrIV:7452715-7452795 0.00011 17_[+1]_55 chrIII:10016836-10016916 0.00014 34_[+1]_38 chrII:8589398-8589478 0.00014 40_[+1]_32 chrII:11333227-11333307 0.00014 3_[+1]_69 chrI:788224-788304 0.00014 45_[+1]_27 chrIV:8607122-8607202 0.00017 19_[+1]_53 chrX:15630818-15630898 0.00021 31_[+1]_41 chrII:759903-759983 0.00021 71_[+1]_1 chrII:12010090-12010170 0.00021 60_[+1]_12 chrII:1134609-1134689 0.00021 41_[+1]_31 chrI:879860-879940 0.00021 39_[+1]_33 chrIII:10811216-10811296 0.00021 49_[+1]_23 chrIV:1845128-1845208 0.00021 33_[+1]_39 chrI:10469092-10469172 0.00021 [+1]_72 chrII:6342366-6342446 0.00021 5_[+1]_67 chrIV:4702206-4702286 0.00021 3_[+1]_69 chrI:8119350-8119430 0.00021 17_[+1]_55 chrIV:9642159-9642239 0.00024 25_[+1]_47 chrII:12438631-12438711 0.00024 1_[+1]_71 chrV:12026924-12027004 0.00027 15_[+1]_57 chrIII:11093624-11093704 0.00027 45_[+1]_27 chrII:5512095-5512175 0.00033 50_[+1]_22 chrIII:13486082-13486162 0.00033 63_[+1]_9 chrI:1598522-1598602 0.00033 45_[+1]_27 chrV:6658914-6658994 0.00033 45_[+1]_27 chrIV:11310782-11310862 0.00036 2_[+1]_70 chrIII:6013230-6013310 0.00036 3_[+1]_69 chrX:12883930-12884010 0.00043 59_[+1]_13 chrIV:10505171-10505251 0.00043 43_[+1]_29 chrIII:2983191-2983271 0.00043 43_[+1]_29 chrX:2807543-2807623 0.00051 30_[+1]_42 chrX:601487-601567 0.00051 13_[+1]_59 chrI:895976-896056 0.00051 69_[+1]_3 chrI:5448449-5448529 0.00051 45_[+1]_27 chrII:10068551-10068631 0.00051 11_[+1]_61 chrI:8349465-8349545 0.00051 11_[+1]_61 chrIV:2052546-2052626 0.00051 43_[+1]_29 chrIII:9310059-9310139 0.00055 65_[+1]_7 chrV:7746048-7746128 0.00055 59_[+1]_13 chrIII:3322479-3322559 0.00055 21_[+1]_51 chrV:13111750-13111830 0.00055 63_[+1]_9 chrV:126747-126827 0.00063 1_[+1]_71 chrI:9097991-9098071 0.00063 8_[+1]_64 chrIV:13487150-13487230 0.00063 52_[+1]_20 chrIII:13340670-13340750 0.00063 59_[+1]_13 chrX:2730030-2730110 0.00063 26_[+1]_46 chrX:7655658-7655738 0.00063 40_[+1]_32 chrIV:2656594-2656674 0.00071 12_[+1]_60 chrX:1060908-1060988 0.00076 5_[+1]_67 chrII:12657793-12657873 0.00076 29_[+1]_43 chrII:8137430-8137510 0.00082 46_[+1]_26 chrIV:7453909-7453989 0.00088 14_[+1]_58 chrX:7651374-7651454 0.00088 27_[+1]_45 chrII:1338338-1338418 0.00088 68_[+1]_4 chrII:10830547-10830627 0.00094 4_[+1]_68 chrV:7983712-7983792 0.00094 28_[+1]_44 chrII:14940495-14940575 0.001 38_[+1]_34 chrX:1118897-1118977 0.001 48_[+1]_24 chrIV:12012567-12012647 0.0011 5_[+1]_67 chrX:14649431-14649511 0.0011 35_[+1]_37 chrIV:16036506-16036586 0.0011 61_[+1]_11 chrIII:3232646-3232726 0.0012 29_[+1]_43 chrII:7281939-7282019 0.0012 60_[+1]_12 chrV:14443604-14443684 0.0012 10_[+1]_62 chrI:8204614-8204694 0.0013 7_[+1]_65 chrI:8692577-8692657 0.0014 [+1]_72 chrV:16752397-16752477 0.0014 68_[+1]_4 chrII:14321367-14321447 0.0015 16_[+1]_56 chrX:14970447-14970527 0.0015 10_[+1]_62 chrIII:8265897-8265977 0.0016 [+1]_72 chrV:11933350-11933430 0.0016 47_[+1]_25 chrIII:6551505-6551585 0.0016 2_[+1]_70 chrIII:10436197-10436277 0.0016 72_[+1] chrIII:11848452-11848532 0.0017 72_[+1] chrII:15254163-15254243 0.0017 59_[+1]_13 chrII:9306929-9307009 0.0018 69_[+1]_3 chrI:7951772-7951852 0.002 51_[+1]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRRGARAR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RRRGARAR width=8 seqs=99 chrX:1018649-1018729 ( 48) GGAGAGAG 1 chrII:4456258-4456338 ( 53) GGAGAGAG 1 chrIV:1824177-1824257 ( 67) GGAGAGAG 1 chrIV:13533202-13533282 ( 25) GAAGAGAG 1 chrV:9561940-9562020 ( 65) GAAGAGAG 1 chrII:6838430-6838510 ( 54) GAAGAGAG 1 chrI:3176522-3176602 ( 71) GGAGAAAG 1 chrII:4506779-4506859 ( 62) GGAGAGAA 1 chrV:13254887-13254967 ( 17) GGAGAGAA 1 chrV:4357523-4357603 ( 6) GGAGAAAG 1 chrX:12184551-12184631 ( 2) GGAGAGAA 1 chrIII:10284372-10284452 ( 57) GGGGAGAG 1 chrI:13495235-13495315 ( 71) GGGGAGAG 1 chrX:17003824-17003904 ( 61) GGGGAGAG 1 chrIII:4068153-4068233 ( 36) GGGGAGAG 1 chrV:1383642-1383722 ( 19) GGGGAGAG 1 chrV:15610551-15610631 ( 33) GGGGAGAG 1 chrI:6810514-6810594 ( 66) GAAGAGAA 1 chrV:1307408-1307488 ( 33) GAAGAAAG 1 chrIV:15561470-15561550 ( 21) GAAGAGAA 1 chrIII:4542497-4542577 ( 25) GAAGAGAA 1 chrX:4620178-4620258 ( 35) GAAGAGAA 1 chrIV:7452715-7452795 ( 18) GAAGAAAG 1 chrIII:10016836-10016916 ( 35) GAGGAGAG 1 chrII:8589398-8589478 ( 41) GGAGAAAA 1 chrII:11333227-11333307 ( 4) GGAGAAAA 1 chrI:788224-788304 ( 46) GAGGAGAG 1 chrIV:8607122-8607202 ( 20) GGGGAAAG 1 chrX:15630818-15630898 ( 32) GAAGAAAA 1 chrII:759903-759983 ( 72) GAAGAAAA 1 chrII:12010090-12010170 ( 61) GAAGAAAA 1 chrII:1134609-1134689 ( 42) GAAGAAAA 1 chrI:879860-879940 ( 40) AGAGAGAG 1 chrIII:10811216-10811296 ( 50) GAAGAAAA 1 chrIV:1845128-1845208 ( 34) AGAGAGAG 1 chrI:10469092-10469172 ( 1) GAAGAAAA 1 chrII:6342366-6342446 ( 6) GAAGAAAA 1 chrIV:4702206-4702286 ( 4) GAAGAAAA 1 chrI:8119350-8119430 ( 18) AGAGAGAG 1 chrIV:9642159-9642239 ( 26) GAGGAAAG 1 chrII:12438631-12438711 ( 2) GAGGAGAA 1 chrV:12026924-12027004 ( 16) AAAGAGAG 1 chrIII:11093624-11093704 ( 46) GGGGAAAA 1 chrII:5512095-5512175 ( 51) AGAGAAAG 1 chrIII:13486082-13486162 ( 64) AGAGAGAA 1 chrI:1598522-1598602 ( 46) AGAGAGAA 1 chrV:6658914-6658994 ( 46) AGAGAAAG 1 chrIV:11310782-11310862 ( 3) GAGGAAAA 1 chrIII:6013230-6013310 ( 4) GAGGAAAA 1 chrX:12883930-12884010 ( 60) AAAGAAAG 1 chrIV:10505171-10505251 ( 44) GAAAAGAG 1 chrIII:2983191-2983271 ( 44) GAAAAGAG 1 chrX:2807543-2807623 ( 31) AGAGAAAA 1 chrX:601487-601567 ( 14) AAGGAGAG 1 chrI:895976-896056 ( 70) AGAGAAAA 1 chrI:5448449-5448529 ( 46) AAGGAGAG 1 chrII:10068551-10068631 ( 12) GGAAAAAG 1 chrI:8349465-8349545 ( 12) GGAAAAAG 1 chrIV:2052546-2052626 ( 44) AGAGAAAA 1 chrIII:9310059-9310139 ( 66) AGGGAAAG 1 chrV:7746048-7746128 ( 60) GGGAAGAG 1 chrIII:3322479-3322559 ( 22) GGGAAGAG 1 chrV:13111750-13111830 ( 64) GGGAAGAG 1 chrV:126747-126827 ( 2) AAAGAAAA 1 chrI:9097991-9098071 ( 9) AAAGAAAA 1 chrIV:13487150-13487230 ( 53) GAAAAGAA 1 chrIII:13340670-13340750 ( 60) GAAAAAAG 1 chrX:2730030-2730110 ( 27) AAAGAAAA 1 chrX:7655658-7655738 ( 41) AAAGAAAA 1 chrIV:2656594-2656674 ( 13) GAGAAGAG 1 chrX:1060908-1060988 ( 6) AGGGAAAA 1 chrII:12657793-12657873 ( 30) AGGGAAAA 1 chrII:8137430-8137510 ( 47) GAAAAAAA 1 chrIV:7453909-7453989 ( 15) GAGAAGAA 1 chrX:7651374-7651454 ( 28) GAGAAGAA 1 chrII:1338338-1338418 ( 69) GAGAAGAA 1 chrII:10830547-10830627 ( 5) AAAAAGAG 1 chrV:7983712-7983792 ( 29) AAAAAGAG 1 chrII:14940495-14940575 ( 39) GGAGAAGG 1 chrX:1118897-1118977 ( 49) AGAAAAAG 1 chrIV:12012567-12012647 ( 6) AGGAAGAG 1 chrX:14649431-14649511 ( 36) GGGGAGGG 1 chrIV:16036506-16036586 ( 62) GGGGAGGG 1 chrIII:3232646-3232726 ( 30) AAAAAGAA 1 chrII:7281939-7282019 ( 61) AGAAAAAA 1 chrV:14443604-14443684 ( 11) AGAAAAAA 1 chrI:8204614-8204694 ( 8) AGGAAAAG 1 chrI:8692577-8692657 ( 1) AAAAAAAA 1 chrV:16752397-16752477 ( 69) GAGGAGGA 1 chrII:14321367-14321447 ( 17) AGGAAAAA 1 chrX:14970447-14970527 ( 11) AGAGAGGA 1 chrIII:8265897-8265977 ( 1) AAGAAAAA 1 chrV:11933350-11933430 ( 48) AAAGAGGA 1 chrIII:6551505-6551585 ( 3) GAAAAGGG 1 chrIII:10436197-10436277 ( 73) GAAAAGGG 1 chrIII:11848452-11848532 ( 73) GGAAAAGG 1 chrII:15254163-15254243 ( 60) AGGGAAGG 1 chrII:9306929-9307009 ( 70) GGAGGGAG 1 chrI:7951772-7951852 ( 52) GGAGGGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRRGARAR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.6474 E= 5.4e-002 34 -1327 151 -1327 83 -1327 116 -1327 123 -1327 60 -1327 2 -1327 166 -1327 181 -1327 -348 -1327 74 -1327 124 -1327 169 -1327 -116 -1327 77 -1327 121 -1327 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRRGARAR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 99 E= 5.4e-002 0.353535 0.000000 0.646465 0.000000 0.494949 0.000000 0.505051 0.000000 0.656566 0.000000 0.343434 0.000000 0.282828 0.000000 0.717172 0.000000 0.979798 0.000000 0.020202 0.000000 0.464646 0.000000 0.535354 0.000000 0.898990 0.000000 0.101010 0.000000 0.474747 0.000000 0.525253 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RRRGARAR MEME-1 regular expression -------------------------------------------------------------------------------- [GA][GA][AG][GA]A[GA]A[GA] -------------------------------------------------------------------------------- Time 5.03 secs. ******************************************************************************** ******************************************************************************** MOTIF ATTTAATT MEME-2 width = 8 sites = 65 llr = 479 E-value = 5.4e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATTTAATT MEME-2 Description -------------------------------------------------------------------------------- Simplified A 73::7a:: pos.-specific C 1:313::: probability G :::::::: matrix T 2779::aa bits 2.2 2.0 1.8 *** 1.6 *** Relative 1.3 * *** Entropy 1.1 ****** (10.6 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ATTTAATT consensus AC C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTAATT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:6341981-6342061 11 3.74e-05 AAAATTGCAT ATTTAATT TTTAAAACTT chrV:7820432-7820512 73 3.74e-05 TTACCGTTCA ATTTAATT chrII:13460500-13460580 13 3.74e-05 taattaatta atttaatt CAGGAAATTC chrV:20424979-20425059 47 3.74e-05 GGCCACCACT ATTTAATT AATTAATTTC chrV:311656-311736 41 3.74e-05 CGCGCAAAAC ATTTAATT GAGCGGCAGC chrIII:7812581-7812661 12 3.74e-05 TTAATACTTT ATTTAATT CAATTATTTT chrIII:10436197-10436277 33 3.74e-05 CAGAATTTAA ATTTAATT TAATATAAAT chrII:10369777-10369857 32 3.74e-05 GGAATAATTG ATTTAATT ATCTCATCTC chrII:1323389-1323469 72 3.74e-05 GTTCGAAATA ATTTAATT T chrIV:2052546-2052626 72 3.74e-05 GAGGCACGCA ATTTAATT A chrX:12184551-12184631 59 3.74e-05 ATCTTGTTTC ATTTAATT TAAGCTCTCT chrIII:4070424-4070504 69 3.74e-05 ATAGATAGAC ATTTAATT AAAA chrII:14321367-14321447 41 3.74e-05 aattaattaa atttaatt aatttaaaaa chrIII:6214407-6214487 53 1.32e-04 CAATGATATG ATTTCATT TTGAGCGTTT chrI:6823349-6823429 57 1.32e-04 TGTGGGTTTT AATTAATT TATATTAAAC chrI:9097991-9098071 41 1.32e-04 GGAACTCCTT AATTAATT AATGCTGCTG chrII:11072680-11072760 24 1.32e-04 CTCTCATTCG AATTAATT GACCGTCTCC chrIII:13340670-13340750 12 1.32e-04 CTCGTTTCCA ATCTAATT AGCCATGCTA chrI:7375028-7375108 43 1.32e-04 ACAATCTTTC AATTAATT GAATCTCTCA chrX:4123451-4123531 17 1.32e-04 ACGCCTTCCA ATTTCATT CTTGTCAAAA chrII:6838430-6838510 38 1.32e-04 CCTGGGACCG AATTAATT GATGTGACGA chrII:8997680-8997760 20 1.32e-04 CCATTTGTGT AATTAATT TACAAGATTT chrV:13170589-13170669 35 1.32e-04 GCCGCAGCGA ATTTCATT TCATTTACGC chrI:1628837-1628917 58 1.32e-04 ATGTGGAATT AATTAATT ATTTTTCAGT chrIV:12845790-12845870 17 1.32e-04 cCGTGAGCTC ATTTCATT TTCTTCCGTC chrX:12210867-12210947 39 1.32e-04 TTTACCAACT AATTAATT TTTGAAAAAC chrII:14900407-14900487 8 1.32e-04 CAAATTC ATTTCATT TCGTAAACGT chrV:7983712-7983792 47 1.32e-04 TAAAATTCCA AATTAATT TGCAAATTCC chrI:423976-424056 7 1.32e-04 GGGTGC ATCTAATT ACGGCAAAGC chrIV:13028104-13028184 59 1.32e-04 CCCGACGCTT AATTAATT CGCGCATGCT chrIV:8607122-8607202 29 1.32e-04 TGGGGAAAGA AATTAATT TTCTCAATGC chrV:1307408-1307488 9 2.12e-04 CACCAGCC AATTCATT GCAAAAATAT chrIV:15816380-15816460 18 2.12e-04 TTGCTCCAGC AACTAATT GTGATTTCAC chrX:7713028-7713108 28 2.12e-04 TACATTTTAC ATCTCATT TGCACTCCAT chrX:4574017-4574097 4 2.12e-04 CTC AACTAATT ACAGCGTTTC chrI:8204614-8204694 31 2.12e-04 TGGATGGGAA AACTAATT ATAAGAGCCC chrI:4976305-4976385 4 2.12e-04 CTC ATCTCATT ACTTAATTAT chrV:5016894-5016974 48 2.40e-04 TCCATTTCCC CTTTAATT TATTTTTGGT chrIV:2193078-2193158 63 2.78e-04 TTAAATCCGG TTTTAATT GGTTTTTTCT chrII:12438631-12438711 33 2.78e-04 GACGTAGTAT TTTTAATT GAGAAATTGA chrII:7814397-7814477 55 2.78e-04 AATGTTTTCC TTTTAATT AAAACAGGCG chrIV:16036506-16036586 37 2.78e-04 ACATAGCAAA TTTTAATT AAACAAACAA chrIII:13293273-13293353 47 3.07e-04 ttcgaacgga attcaatt aaaaacggat chrIV:4586127-4586207 67 3.07e-04 AGATGTCCAA ATTCAATT ACTTTT chrV:12025608-12025688 35 3.07e-04 AATATTTCGA ATTCAATT ACATGCATGC chrI:784029-784109 38 3.07e-04 CTCATCGAAA ATTCAATT AAACGCTAAA chrIV:7830292-7830372 6 3.29e-04 ATTAA AACTCATT TGACAAGTGC chrV:13409240-13409320 34 3.29e-04 AGAATCACAA AACTCATT CACGCGCGAA chrX:1601680-1601760 52 4.02e-04 GCGAGGACAC CTCTAATT CTGGCTCTTT chrIII:9583274-9583354 19 4.02e-04 atagtttttt ctttcatt tataattAGT chrII:11753132-11753212 51 4.02e-04 AGAGTGCAGA CATTAATT GGAAGAATCA chrIV:8145351-8145431 66 4.97e-04 TTCCTGCAAT TTCTAATT AAATTCT chrV:16752397-16752477 43 4.97e-04 ACGACACAAT TTTTCATT CATTTTCCGC chrII:11330476-11330556 1 4.97e-04 . ttttcatt ttcaCCACAC chrV:20696930-20697010 20 4.97e-04 CTCACTATTT TTCTAATT TCTAAGAAAT chrX:13318742-13318822 11 5.69e-04 CTCCTTCTTC ATTCCATT AGTCAAGCGT chrIV:7840060-7840140 8 5.69e-04 TTTCCCA ATTCCATT TTGCTCTCTT chrIV:11605088-11605168 34 6.31e-04 ACAGTTTGTT CACTAATT TGCCGGTGGT chrIV:7156402-7156482 59 6.31e-04 CCTTCTTTTC CTCTCATT CTCTCTATCC chrX:16484799-16484879 8 6.31e-04 CTCGGTG CTCTCATT ACATCACTCC chrIII:11935244-11935324 63 6.31e-04 TGCTGCTCCC CACTAATT AGAGCTCAAA chrIII:2983191-2983271 13 7.10e-04 GAGCTCCCCC TTCTCATT AGTGCTCACG chrIII:6220307-6220387 64 7.71e-04 TCTCTCCAGA AACCAATT ACTCGCCGA chrV:20879460-20879540 55 8.22e-04 CTCCAACCTA TTTCAATT TTTTTTACTC chrII:759903-759983 11 1.04e-03 CGAAACTCCC ATTTATTT CGCTCATTGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTAATT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:6341981-6342061 3.7e-05 10_[+2]_62 chrV:7820432-7820512 3.7e-05 72_[+2] chrII:13460500-13460580 3.7e-05 12_[+2]_60 chrV:20424979-20425059 3.7e-05 46_[+2]_26 chrV:311656-311736 3.7e-05 40_[+2]_32 chrIII:7812581-7812661 3.7e-05 11_[+2]_61 chrIII:10436197-10436277 3.7e-05 32_[+2]_40 chrII:10369777-10369857 3.7e-05 31_[+2]_41 chrII:1323389-1323469 3.7e-05 71_[+2]_1 chrIV:2052546-2052626 3.7e-05 71_[+2]_1 chrX:12184551-12184631 3.7e-05 58_[+2]_14 chrIII:4070424-4070504 3.7e-05 68_[+2]_4 chrII:14321367-14321447 3.7e-05 40_[+2]_32 chrIII:6214407-6214487 0.00013 52_[+2]_20 chrI:6823349-6823429 0.00013 56_[+2]_16 chrI:9097991-9098071 0.00013 40_[+2]_32 chrII:11072680-11072760 0.00013 23_[+2]_49 chrIII:13340670-13340750 0.00013 11_[+2]_61 chrI:7375028-7375108 0.00013 42_[+2]_30 chrX:4123451-4123531 0.00013 16_[+2]_56 chrII:6838430-6838510 0.00013 37_[+2]_35 chrII:8997680-8997760 0.00013 19_[+2]_53 chrV:13170589-13170669 0.00013 34_[+2]_38 chrI:1628837-1628917 0.00013 57_[+2]_15 chrIV:12845790-12845870 0.00013 16_[+2]_56 chrX:12210867-12210947 0.00013 38_[+2]_34 chrII:14900407-14900487 0.00013 7_[+2]_65 chrV:7983712-7983792 0.00013 46_[+2]_26 chrI:423976-424056 0.00013 6_[+2]_66 chrIV:13028104-13028184 0.00013 58_[+2]_14 chrIV:8607122-8607202 0.00013 28_[+2]_44 chrV:1307408-1307488 0.00021 8_[+2]_64 chrIV:15816380-15816460 0.00021 17_[+2]_55 chrX:7713028-7713108 0.00021 27_[+2]_45 chrX:4574017-4574097 0.00021 3_[+2]_69 chrI:8204614-8204694 0.00021 30_[+2]_42 chrI:4976305-4976385 0.00021 3_[+2]_69 chrV:5016894-5016974 0.00024 47_[+2]_25 chrIV:2193078-2193158 0.00028 62_[+2]_10 chrII:12438631-12438711 0.00028 32_[+2]_40 chrII:7814397-7814477 0.00028 54_[+2]_18 chrIV:16036506-16036586 0.00028 36_[+2]_36 chrIII:13293273-13293353 0.00031 46_[+2]_26 chrIV:4586127-4586207 0.00031 66_[+2]_6 chrV:12025608-12025688 0.00031 34_[+2]_38 chrI:784029-784109 0.00031 37_[+2]_35 chrIV:7830292-7830372 0.00033 5_[+2]_67 chrV:13409240-13409320 0.00033 33_[+2]_39 chrX:1601680-1601760 0.0004 51_[+2]_21 chrIII:9583274-9583354 0.0004 18_[+2]_54 chrII:11753132-11753212 0.0004 50_[+2]_22 chrIV:8145351-8145431 0.0005 65_[+2]_7 chrV:16752397-16752477 0.0005 42_[+2]_30 chrII:11330476-11330556 0.0005 [+2]_72 chrV:20696930-20697010 0.0005 19_[+2]_53 chrX:13318742-13318822 0.00057 10_[+2]_62 chrIV:7840060-7840140 0.00057 7_[+2]_65 chrIV:11605088-11605168 0.00063 33_[+2]_39 chrIV:7156402-7156482 0.00063 58_[+2]_14 chrX:16484799-16484879 0.00063 7_[+2]_65 chrIII:11935244-11935324 0.00063 62_[+2]_10 chrIII:2983191-2983271 0.00071 12_[+2]_60 chrIII:6220307-6220387 0.00077 63_[+2]_9 chrV:20879460-20879540 0.00082 54_[+2]_18 chrII:759903-759983 0.001 10_[+2]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTAATT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATTTAATT width=8 seqs=65 chrI:6341981-6342061 ( 11) ATTTAATT 1 chrV:7820432-7820512 ( 73) ATTTAATT 1 chrII:13460500-13460580 ( 13) ATTTAATT 1 chrV:20424979-20425059 ( 47) ATTTAATT 1 chrV:311656-311736 ( 41) ATTTAATT 1 chrIII:7812581-7812661 ( 12) ATTTAATT 1 chrIII:10436197-10436277 ( 33) ATTTAATT 1 chrII:10369777-10369857 ( 32) ATTTAATT 1 chrII:1323389-1323469 ( 72) ATTTAATT 1 chrIV:2052546-2052626 ( 72) ATTTAATT 1 chrX:12184551-12184631 ( 59) ATTTAATT 1 chrIII:4070424-4070504 ( 69) ATTTAATT 1 chrII:14321367-14321447 ( 41) ATTTAATT 1 chrIII:6214407-6214487 ( 53) ATTTCATT 1 chrI:6823349-6823429 ( 57) AATTAATT 1 chrI:9097991-9098071 ( 41) AATTAATT 1 chrII:11072680-11072760 ( 24) AATTAATT 1 chrIII:13340670-13340750 ( 12) ATCTAATT 1 chrI:7375028-7375108 ( 43) AATTAATT 1 chrX:4123451-4123531 ( 17) ATTTCATT 1 chrII:6838430-6838510 ( 38) AATTAATT 1 chrII:8997680-8997760 ( 20) AATTAATT 1 chrV:13170589-13170669 ( 35) ATTTCATT 1 chrI:1628837-1628917 ( 58) AATTAATT 1 chrIV:12845790-12845870 ( 17) ATTTCATT 1 chrX:12210867-12210947 ( 39) AATTAATT 1 chrII:14900407-14900487 ( 8) ATTTCATT 1 chrV:7983712-7983792 ( 47) AATTAATT 1 chrI:423976-424056 ( 7) ATCTAATT 1 chrIV:13028104-13028184 ( 59) AATTAATT 1 chrIV:8607122-8607202 ( 29) AATTAATT 1 chrV:1307408-1307488 ( 9) AATTCATT 1 chrIV:15816380-15816460 ( 18) AACTAATT 1 chrX:7713028-7713108 ( 28) ATCTCATT 1 chrX:4574017-4574097 ( 4) AACTAATT 1 chrI:8204614-8204694 ( 31) AACTAATT 1 chrI:4976305-4976385 ( 4) ATCTCATT 1 chrV:5016894-5016974 ( 48) CTTTAATT 1 chrIV:2193078-2193158 ( 63) TTTTAATT 1 chrII:12438631-12438711 ( 33) TTTTAATT 1 chrII:7814397-7814477 ( 55) TTTTAATT 1 chrIV:16036506-16036586 ( 37) TTTTAATT 1 chrIII:13293273-13293353 ( 47) ATTCAATT 1 chrIV:4586127-4586207 ( 67) ATTCAATT 1 chrV:12025608-12025688 ( 35) ATTCAATT 1 chrI:784029-784109 ( 38) ATTCAATT 1 chrIV:7830292-7830372 ( 6) AACTCATT 1 chrV:13409240-13409320 ( 34) AACTCATT 1 chrX:1601680-1601760 ( 52) CTCTAATT 1 chrIII:9583274-9583354 ( 19) CTTTCATT 1 chrII:11753132-11753212 ( 51) CATTAATT 1 chrIV:8145351-8145431 ( 66) TTCTAATT 1 chrV:16752397-16752477 ( 43) TTTTCATT 1 chrII:11330476-11330556 ( 1) TTTTCATT 1 chrV:20696930-20697010 ( 20) TTCTAATT 1 chrX:13318742-13318822 ( 11) ATTCCATT 1 chrIV:7840060-7840140 ( 8) ATTCCATT 1 chrIV:11605088-11605168 ( 34) CACTAATT 1 chrIV:7156402-7156482 ( 59) CTCTCATT 1 chrX:16484799-16484879 ( 8) CTCTCATT 1 chrIII:11935244-11935324 ( 63) CACTAATT 1 chrIII:2983191-2983271 ( 13) TTCTCATT 1 chrIII:6220307-6220387 ( 64) AACCAATT 1 chrV:20879460-20879540 ( 55) TTTCAATT 1 chrII:759903-759983 ( 11) ATTTATTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTAATT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.88203 E= 5.4e-006 137 -80 -1267 -86 21 -1267 -1267 128 -1267 36 -1267 137 -1267 -80 -1267 165 137 36 -1267 -1267 182 -1267 -1267 -418 -1267 -1267 -1267 184 -1267 -1267 -1267 184 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTAATT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 65 E= 5.4e-006 0.723077 0.123077 0.000000 0.153846 0.323077 0.000000 0.000000 0.676923 0.000000 0.276923 0.000000 0.723077 0.000000 0.123077 0.000000 0.876923 0.723077 0.276923 0.000000 0.000000 0.984615 0.000000 0.000000 0.015385 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATTTAATT MEME-2 regular expression -------------------------------------------------------------------------------- A[TA][TC]T[AC]ATT -------------------------------------------------------------------------------- Time 8.63 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCCYCCC MEME-3 width = 8 sites = 32 llr = 267 E-value = 2.4e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCCYCCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::11: pos.-specific C a379698a probability G ::311::: matrix T :71:3:2: bits 2.2 * * 2.0 * * 1.8 * * * * 1.6 * * * * Relative 1.3 * * * * Entropy 1.1 **** *** (12.0 bits) 0.9 **** *** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCCCCCC consensus CG T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCYCCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2802567-2802647 49 5.95e-06 CGCTCTGTTT CTCCCCCC AGTTGCCACC chrX:2731982-2732062 5 1.05e-05 GCCC CCCCCCCC CCCACTCCTC chrII:12665225-12665305 39 1.05e-05 CCGTGAAGAG CCCCCCCC CCCCCAATGA chrII:9947107-9947187 38 1.05e-05 TTTTACGACC CCCCCCCC TCTCCGTATG chrIII:12082144-12082224 45 1.05e-05 TGGGGGCTGC CCCCCCCC TCCACTCGCT chrIV:11310782-11310862 41 1.83e-05 GGGCGTGTAA CTCCTCCC CATAATTCGT chrX:16484799-16484879 31 1.83e-05 ACTCCCCCTT CTCCTCCC ACCGCCCTGC chrX:4123451-4123531 69 2.45e-05 GTCTCAATTG CTGCCCCC ATCT chrIII:12060247-12060327 13 3.05e-05 CTCGCGCGCG CCCCTCCC GTCAGCCAAA chrIII:5564991-5565071 9 3.53e-05 GCCCCAAT CCGCCCCC ATCCTCTACG chrIII:10123779-10123859 5 5.74e-05 CGTT CTGCTCCC CTTTTCGTGG chrII:10804507-10804587 24 5.74e-05 TCTCACTTGG CTCCGCCC CTTCTGTCCT chrIII:10811416-10811496 10 5.74e-05 CTTTTCGTT CTGCTCCC CGTTTCGTGG chrI:10469297-10469377 18 5.74e-05 CCTTTTCGTT CTGCTCCC CTTTTCGTGG chrI:13422623-13422703 9 5.74e-05 CCGTGAAG CTCCGCCC ACTTTTTCCG chrIII:6220307-6220387 39 5.74e-05 GTCCTCTAAG CTCCGCCC GTTTCATTCT chrIII:11935244-11935324 55 5.74e-05 GCCCTTGCTG CTGCTCCC CACTAATTAG chrII:15254163-15254243 3 5.74e-05 TT CTCCCCTC ATCACTAACT chrV:20832857-20832937 12 6.51e-05 TCTCTCATCT CTCCCCAC TCGTGAGGCT chrX:4307699-4307779 12 8.98e-05 GCTGGGTGGC CTCCCACC CTAAGGCCCC chrX:13187446-13187526 36 8.98e-05 ACAAAAACCA CTCCCACC TCCACCCTCG chrX:5896071-5896151 11 8.98e-05 TTCTTCATTA CCCCCCTC ATTTGCCTAT chrX:14028769-14028849 65 8.98e-05 TCATCTGTAT CCCCCCTC TCAATACC chrX:3126302-3126382 12 9.99e-05 TTCACATGTA CTCCTCTC TACTCGAGCC chrI:7951772-7951852 15 1.14e-04 GTGGCTTTCT CTCGCCCC TGTTTTCTCT chrI:3786244-3786324 32 1.14e-04 AATCTTGGCT CTCGCCCC ATTGTGCTCT chrV:20696930-20697010 71 1.14e-04 TTAACTTGTT CTTCCCCC GT chrV:14491290-14491370 12 1.45e-04 CCGTCGCCTT CTCCTCAC GCGTCTTTCC chrI:4976305-4976385 24 1.45e-04 TTAATTATGC CTCCTCAC TTCCCATTCC chrI:10175360-10175440 61 1.87e-04 ACGCCCCTTT CCTCCCCC GTTTTCCATT chrI:2466404-2466484 33 2.25e-04 ATATCCCCCG CTGCCACC CAATCCGTGG chrIV:16663783-16663863 61 2.44e-04 CCAAGTGTTT CTGCTCTC TGCATCTCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCYCCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2802567-2802647 5.9e-06 48_[+3]_24 chrX:2731982-2732062 1.1e-05 4_[+3]_68 chrII:12665225-12665305 1.1e-05 38_[+3]_34 chrII:9947107-9947187 1.1e-05 37_[+3]_35 chrIII:12082144-12082224 1.1e-05 44_[+3]_28 chrIV:11310782-11310862 1.8e-05 40_[+3]_32 chrX:16484799-16484879 1.8e-05 30_[+3]_42 chrX:4123451-4123531 2.5e-05 68_[+3]_4 chrIII:12060247-12060327 3e-05 12_[+3]_60 chrIII:5564991-5565071 3.5e-05 8_[+3]_64 chrIII:10123779-10123859 5.7e-05 4_[+3]_68 chrII:10804507-10804587 5.7e-05 23_[+3]_49 chrIII:10811416-10811496 5.7e-05 9_[+3]_63 chrI:10469297-10469377 5.7e-05 17_[+3]_55 chrI:13422623-13422703 5.7e-05 8_[+3]_64 chrIII:6220307-6220387 5.7e-05 38_[+3]_34 chrIII:11935244-11935324 5.7e-05 54_[+3]_18 chrII:15254163-15254243 5.7e-05 2_[+3]_70 chrV:20832857-20832937 6.5e-05 11_[+3]_61 chrX:4307699-4307779 9e-05 11_[+3]_61 chrX:13187446-13187526 9e-05 35_[+3]_37 chrX:5896071-5896151 9e-05 10_[+3]_62 chrX:14028769-14028849 9e-05 64_[+3]_8 chrX:3126302-3126382 0.0001 11_[+3]_61 chrI:7951772-7951852 0.00011 14_[+3]_58 chrI:3786244-3786324 0.00011 31_[+3]_41 chrV:20696930-20697010 0.00011 70_[+3]_2 chrV:14491290-14491370 0.00014 11_[+3]_61 chrI:4976305-4976385 0.00014 23_[+3]_49 chrI:10175360-10175440 0.00019 60_[+3]_12 chrI:2466404-2466484 0.00022 32_[+3]_40 chrIV:16663783-16663863 0.00024 60_[+3]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCYCCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCCYCCC width=8 seqs=32 chrX:2802567-2802647 ( 49) CTCCCCCC 1 chrX:2731982-2732062 ( 5) CCCCCCCC 1 chrII:12665225-12665305 ( 39) CCCCCCCC 1 chrII:9947107-9947187 ( 38) CCCCCCCC 1 chrIII:12082144-12082224 ( 45) CCCCCCCC 1 chrIV:11310782-11310862 ( 41) CTCCTCCC 1 chrX:16484799-16484879 ( 31) CTCCTCCC 1 chrX:4123451-4123531 ( 69) CTGCCCCC 1 chrIII:12060247-12060327 ( 13) CCCCTCCC 1 chrIII:5564991-5565071 ( 9) CCGCCCCC 1 chrIII:10123779-10123859 ( 5) CTGCTCCC 1 chrII:10804507-10804587 ( 24) CTCCGCCC 1 chrIII:10811416-10811496 ( 10) CTGCTCCC 1 chrI:10469297-10469377 ( 18) CTGCTCCC 1 chrI:13422623-13422703 ( 9) CTCCGCCC 1 chrIII:6220307-6220387 ( 39) CTCCGCCC 1 chrIII:11935244-11935324 ( 55) CTGCTCCC 1 chrII:15254163-15254243 ( 3) CTCCCCTC 1 chrV:20832857-20832937 ( 12) CTCCCCAC 1 chrX:4307699-4307779 ( 12) CTCCCACC 1 chrX:13187446-13187526 ( 36) CTCCCACC 1 chrX:5896071-5896151 ( 11) CCCCCCTC 1 chrX:14028769-14028849 ( 65) CCCCCCTC 1 chrX:3126302-3126382 ( 12) CTCCTCTC 1 chrI:7951772-7951852 ( 15) CTCGCCCC 1 chrI:3786244-3786324 ( 32) CTCGCCCC 1 chrV:20696930-20697010 ( 71) CTTCCCCC 1 chrV:14491290-14491370 ( 12) CTCCTCAC 1 chrI:4976305-4976385 ( 24) CTCCTCAC 1 chrI:10175360-10175440 ( 61) CCTCCCCC 1 chrI:2466404-2466484 ( 33) CTGCCACC 1 chrIV:16663783-16663863 ( 61) CTGCTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCYCCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.155 E= 2.4e+000 -1164 222 -1164 -1164 -1164 39 -1164 136 -1164 168 14 -216 -1164 212 -186 -1164 -1164 139 -127 30 -157 207 -1164 -1164 -157 180 -1164 -84 -1164 222 -1164 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCYCCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 2.4e+000 0.000000 1.000000 0.000000 0.000000 0.000000 0.281250 0.000000 0.718750 0.000000 0.687500 0.250000 0.062500 0.000000 0.937500 0.062500 0.000000 0.000000 0.562500 0.093750 0.343750 0.093750 0.906250 0.000000 0.000000 0.093750 0.750000 0.000000 0.156250 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCYCCC MEME-3 regular expression -------------------------------------------------------------------------------- C[TC][CG]C[CT]CCC -------------------------------------------------------------------------------- Time 12.11 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTGTGTG MEME-4 width = 8 sites = 17 llr = 170 E-value = 6.5e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::::2:1: probability G :a:a:9:a matrix T a:a:819: bits 2.2 * * * 2.0 * * * 1.8 **** * 1.6 **** *** Relative 1.3 ******** Entropy 1.1 ******** (14.5 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTGTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:6823349-6823429 43 1.60e-05 TGTCTCAGTC TGTGTGTG GGTTTTAATT chrIII:9133734-9133814 40 1.60e-05 tgtgtgtgtg tgtgtgtg aggtgaaagg chrIII:6431890-6431970 15 1.60e-05 TGTTGCCAAG TGTGTGTG CATTCTGACG chrIV:16663783-16663863 19 1.60e-05 CTCTCCCGTG TGTGTGTG TGCTCCTGGA chrIII:9703931-9704011 37 1.60e-05 GCCGTGTGTG TGTGTGTG CGTCCTCTCC chrII:6838430-6838510 5 1.60e-05 CCTC TGTGTGTG TATGTGCACA chrV:6658914-6658994 67 1.60e-05 GGCACATGTG TGTGTGTG TGTGCG chrIV:15561470-15561550 56 1.60e-05 AAtgtgtgtg tgtgtgtg tgtgtgtgag chrIII:10016836-10016916 11 1.60e-05 gagatgaata tgtgtgtg agtggagggg chrIII:11935244-11935324 6 1.60e-05 gtgtg tgtgtgtg tgtgCGAGCA chrIII:6078103-6078183 17 1.60e-05 GTCGTGTGTA TGTGTGTG TCCAAAACCC chrV:9964468-9964548 21 2.83e-05 ATGGAAAATT TGTGCGTG GCTGGTGTGA chrX:601487-601567 42 2.83e-05 GGAATAAAAG TGTGCGTG CAAAACAAGG chrIV:2656594-2656674 58 2.83e-05 TCGAAGCTTT TGTGCGTG GGTGAGGAAG chrII:10804507-10804587 54 4.82e-05 TTTTGCGATC TGTGTTTG ATGTGCTCGA chrII:11753132-11753212 21 4.82e-05 GCTCTAATTG TGTGTTTG GACGACAAGA chrIV:1845128-1845208 1 6.05e-05 . TGTGTGCG CACTAGCACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:6823349-6823429 1.6e-05 42_[+4]_30 chrIII:9133734-9133814 1.6e-05 39_[+4]_33 chrIII:6431890-6431970 1.6e-05 14_[+4]_58 chrIV:16663783-16663863 1.6e-05 18_[+4]_54 chrIII:9703931-9704011 1.6e-05 36_[+4]_36 chrII:6838430-6838510 1.6e-05 4_[+4]_68 chrV:6658914-6658994 1.6e-05 66_[+4]_6 chrIV:15561470-15561550 1.6e-05 55_[+4]_17 chrIII:10016836-10016916 1.6e-05 10_[+4]_62 chrIII:11935244-11935324 1.6e-05 5_[+4]_67 chrIII:6078103-6078183 1.6e-05 16_[+4]_56 chrV:9964468-9964548 2.8e-05 20_[+4]_52 chrX:601487-601567 2.8e-05 41_[+4]_31 chrIV:2656594-2656674 2.8e-05 57_[+4]_15 chrII:10804507-10804587 4.8e-05 53_[+4]_19 chrII:11753132-11753212 4.8e-05 20_[+4]_52 chrIV:1845128-1845208 6.1e-05 [+4]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTGTGTG width=8 seqs=17 chrI:6823349-6823429 ( 43) TGTGTGTG 1 chrIII:9133734-9133814 ( 40) TGTGTGTG 1 chrIII:6431890-6431970 ( 15) TGTGTGTG 1 chrIV:16663783-16663863 ( 19) TGTGTGTG 1 chrIII:9703931-9704011 ( 37) TGTGTGTG 1 chrII:6838430-6838510 ( 5) TGTGTGTG 1 chrV:6658914-6658994 ( 67) TGTGTGTG 1 chrIV:15561470-15561550 ( 56) TGTGTGTG 1 chrIII:10016836-10016916 ( 11) TGTGTGTG 1 chrIII:11935244-11935324 ( 6) TGTGTGTG 1 chrIII:6078103-6078183 ( 17) TGTGTGTG 1 chrV:9964468-9964548 ( 21) TGTGCGTG 1 chrX:601487-601567 ( 42) TGTGCGTG 1 chrIV:2656594-2656674 ( 58) TGTGCGTG 1 chrII:10804507-10804587 ( 54) TGTGTTTG 1 chrII:11753132-11753212 ( 21) TGTGTTTG 1 chrIV:1845128-1845208 ( 1) TGTGTGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.8333 E= 6.5e-003 -1073 -1073 -1073 184 -1073 -1073 214 -1073 -1073 -1073 -1073 184 -1073 -1073 214 -1073 -1073 -29 -1073 156 -1073 -1073 196 -125 -1073 -187 -1073 175 -1073 -1073 214 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 6.5e-003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.176471 0.000000 0.823529 0.000000 0.000000 0.882353 0.117647 0.000000 0.058824 0.000000 0.941176 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTGTGTG MEME-4 regular expression -------------------------------------------------------------------------------- TGTGTGTG -------------------------------------------------------------------------------- Time 15.53 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCKTCT MEME-5 width = 8 sites = 20 llr = 186 E-value = 2.3e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCKTCT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:1a:1a: probability G ::9:53:: matrix T :a:157:a bits 2.2 * * 2.0 * * * 1.8 **** ** 1.6 **** ** Relative 1.3 **** ** Entropy 1.1 **** ** (13.4 bits) 0.9 ***** ** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGCGTCT consensus TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCKTCT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:8145351-8145431 36 1.11e-05 GTTTCGATGC CTGCGTCT CTGCATCTTG chrII:759903-759983 43 1.11e-05 GCTCTCCCGT CTGCGTCT CGCATATTCC chrIII:671190-671270 18 1.11e-05 CAATTTCTCG CTGCGTCT CCAAACCCGC chrV:20879460-20879540 39 1.11e-05 TCCATGTTTT CTGCGTCT CCAACCTATT chrII:4506779-4506859 12 1.11e-05 GCACTAACCT CTGCGTCT CACTTGGTAA chrI:2464695-2464775 33 1.11e-05 ACGTTGTGTG CTGCGTCT CGTAGGCTTC chrIV:6648714-6648794 7 1.11e-05 TTCTCT CTGCGTCT CCTCATTTTG chrIV:1906950-1907030 63 1.11e-05 CCCCATCGGT CTGCGTCT CTCTATCACG chrI:879860-879940 71 2.49e-05 GAAAGAGCAC CTGCTTCT TC chrII:9947107-9947187 13 2.49e-05 TGATTGTCAT CTGCTTCT CATAAAATTT chrIII:2535343-2535423 27 4.51e-05 CTGCTTACTG CTGCTGCT TCACTCTGAA chrIII:11936082-11936162 60 4.51e-05 TTCGTCGTGT CTGCTGCT TTGCCCCGCC chrI:9097991-9098071 53 4.51e-05 TTAATTAATG CTGCTGCT CAAAATAAGC chrIII:9703931-9704011 11 4.51e-05 CTCTCCTCTA CTGCTGCT TTTCTGGAGC chrII:3527629-3527709 72 4.51e-05 ATAATGGGCT CTGCTGCT C chrV:126747-126827 63 5.36e-05 GGACAAACGC CTGCGCCT CTTCATTTCG chrI:9846383-9846463 46 6.42e-05 tcttcttctt ctgctcct tttgctctct chrII:9760626-9760706 9 7.48e-05 CAGCCGTT CTCCGTCT CCAAGTCCCG chrX:13318742-13318822 1 8.80e-05 . CTCCTTCT TCATTCCATT chrX:16484799-16484879 71 1.40e-04 CTCTTGATCT CTGTTTCT GG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCKTCT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:8145351-8145431 1.1e-05 35_[+5]_37 chrII:759903-759983 1.1e-05 42_[+5]_30 chrIII:671190-671270 1.1e-05 17_[+5]_55 chrV:20879460-20879540 1.1e-05 38_[+5]_34 chrII:4506779-4506859 1.1e-05 11_[+5]_61 chrI:2464695-2464775 1.1e-05 32_[+5]_40 chrIV:6648714-6648794 1.1e-05 6_[+5]_66 chrIV:1906950-1907030 1.1e-05 62_[+5]_10 chrI:879860-879940 2.5e-05 70_[+5]_2 chrII:9947107-9947187 2.5e-05 12_[+5]_60 chrIII:2535343-2535423 4.5e-05 26_[+5]_46 chrIII:11936082-11936162 4.5e-05 59_[+5]_13 chrI:9097991-9098071 4.5e-05 52_[+5]_20 chrIII:9703931-9704011 4.5e-05 10_[+5]_62 chrII:3527629-3527709 4.5e-05 71_[+5]_1 chrV:126747-126827 5.4e-05 62_[+5]_10 chrI:9846383-9846463 6.4e-05 45_[+5]_27 chrII:9760626-9760706 7.5e-05 8_[+5]_64 chrX:13318742-13318822 8.8e-05 [+5]_72 chrX:16484799-16484879 0.00014 70_[+5]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCKTCT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCKTCT width=8 seqs=20 chrIV:8145351-8145431 ( 36) CTGCGTCT 1 chrII:759903-759983 ( 43) CTGCGTCT 1 chrIII:671190-671270 ( 18) CTGCGTCT 1 chrV:20879460-20879540 ( 39) CTGCGTCT 1 chrII:4506779-4506859 ( 12) CTGCGTCT 1 chrI:2464695-2464775 ( 33) CTGCGTCT 1 chrIV:6648714-6648794 ( 7) CTGCGTCT 1 chrIV:1906950-1907030 ( 63) CTGCGTCT 1 chrI:879860-879940 ( 71) CTGCTTCT 1 chrII:9947107-9947187 ( 13) CTGCTTCT 1 chrIII:2535343-2535423 ( 27) CTGCTGCT 1 chrIII:11936082-11936162 ( 60) CTGCTGCT 1 chrI:9097991-9098071 ( 53) CTGCTGCT 1 chrIII:9703931-9704011 ( 11) CTGCTGCT 1 chrII:3527629-3527709 ( 72) CTGCTGCT 1 chrV:126747-126827 ( 63) CTGCGCCT 1 chrI:9846383-9846463 ( 46) CTGCTCCT 1 chrII:9760626-9760706 ( 9) CTCCGTCT 1 chrX:13318742-13318822 ( 1) CTCCTTCT 1 chrX:16484799-16484879 ( 71) CTGTTTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCKTCT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.7763 E= 2.3e+000 -1097 222 -1097 -1097 -1097 -1097 -1097 184 -1097 -110 199 -1097 -1097 214 -1097 -248 -1097 -1097 114 84 -1097 -110 14 122 -1097 222 -1097 -1097 -1097 -1097 -1097 184 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCKTCT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 2.3e+000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.100000 0.900000 0.000000 0.000000 0.950000 0.000000 0.050000 0.000000 0.000000 0.500000 0.500000 0.000000 0.100000 0.250000 0.650000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCKTCT MEME-5 regular expression -------------------------------------------------------------------------------- CTGC[GT][TG]CT -------------------------------------------------------------------------------- Time 18.91 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:2983191-2983271 3.66e-03 80 chrV:11855132-11855212 9.43e-01 80 chrII:14321367-14321447 8.97e-02 40_[+2(3.74e-05)]_32 chrIV:7452715-7452795 1.89e-01 80 chrI:788224-788304 1.15e-01 80 chrX:12082914-12082994 1.01e-01 80 chrII:3527629-3527709 4.32e-02 71_[+5(4.51e-05)]_1 chrII:12657793-12657873 2.97e-01 80 chrIII:4070424-4070504 2.10e-01 68_[+2(3.74e-05)]_4 chrX:12184551-12184631 7.22e-03 1_[+1(6.02e-05)]_49_[+2(3.74e-05)]_\ 14 chrII:15254163-15254243 6.64e-02 2_[+3(5.74e-05)]_70 chrIII:5642810-5642890 3.39e-01 80 chrIV:8607122-8607202 6.15e-03 80 chrIII:6078103-6078183 6.11e-04 16_[+4(1.60e-05)]_56 chrIV:2052546-2052626 2.89e-02 71_[+2(3.74e-05)]_1 chrI:784029-784109 4.82e-02 80 chrI:4976305-4976385 1.29e-02 80 chrV:12025608-12025688 1.69e-01 80 chrX:1060908-1060988 2.86e-01 80 chrIII:6013230-6013310 1.50e-01 80 chrV:20696930-20697010 6.06e-03 80 chrX:4620178-4620258 7.47e-02 80 chrIII:10397062-10397142 4.75e-01 80 chrV:4357523-4357603 1.94e-01 5_[+1(6.02e-05)]_67 chrI:8119350-8119430 1.10e-01 80 chrIII:11935244-11935324 7.12e-06 1_[+4(1.60e-05)]_[+4(1.60e-05)]_34_\ [+5(4.51e-05)]_21 chrI:8204614-8204694 1.26e-01 80 chrX:14028769-14028849 3.49e-02 64_[+3(8.98e-05)]_8 chrIV:7840060-7840140 4.30e-02 80 chrIV:16036506-16036586 9.56e-03 80 chrIII:11359546-11359626 6.90e-01 80 chrII:11330476-11330556 1.64e-01 80 chrX:9956229-9956309 2.62e-01 80 chrIV:4586127-4586207 1.13e-01 80 chrIII:12082144-12082224 1.74e-02 43_[+3(1.05e-05)]_29 chrIV:13028104-13028184 1.29e-01 80 chrII:11333227-11333307 1.51e-01 80 chrIII:12060247-12060327 4.80e-02 12_[+3(3.05e-05)]_60 chrIV:4702206-4702286 3.88e-01 80 chrI:423976-424056 1.89e-01 80 chrIV:11872046-11872126 9.66e-01 80 chrII:9947107-9947187 1.24e-03 12_[+5(2.49e-05)]_15_[+3(1.05e-05)]_\ 37 chrX:4574017-4574097 2.09e-02 80 chrIII:8510010-8510090 3.42e-01 80 chrIV:10505171-10505251 2.66e-01 80 chrV:16752397-16752477 2.95e-01 80 chrV:5016894-5016974 1.10e-01 80 chrII:7814397-7814477 1.64e-01 80 chrX:7713028-7713108 1.65e-01 80 chrII:12665225-12665305 6.54e-03 38_[+3(1.05e-05)]_34 chrIV:8360169-8360249 7.23e-01 80 chrV:13254887-13254967 8.94e-02 16_[+1(6.02e-05)]_56 chrIII:3232646-3232726 2.98e-01 80 chrIV:10347722-10347802 7.11e-01 80 chrII:12438631-12438711 9.69e-02 80 chrV:15610551-15610631 2.91e-01 32_[+1(7.06e-05)]_40 chrI:814032-814112 3.69e-01 80 chrII:6342366-6342446 3.87e-01 80 chrI:8349465-8349545 3.20e-01 80 chrIII:7708828-7708908 1.53e-01 80 chrII:1323389-1323469 3.56e-02 71_[+2(3.74e-05)]_1 chrII:10990718-10990798 8.50e-01 80 chrV:13111750-13111830 6.26e-01 80 chrII:11567493-11567573 9.34e-01 80 chrII:8589398-8589478 6.47e-02 80 chrX:2802567-2802647 2.63e-03 4_[+3(5.74e-05)]_36_[+3(5.95e-06)]_\ 24 chrII:10373739-10373819 1.61e-01 80 chrV:1383642-1383722 6.09e-02 18_[+1(7.06e-05)]_54 chrII:9306929-9307009 4.27e-01 80 chrIV:3859280-3859360 6.66e-01 80 chrII:10068551-10068631 2.53e-01 80 chrIII:6220307-6220387 1.99e-02 38_[+3(5.74e-05)]_34 chrV:16553096-16553176 9.54e-01 80 chrIII:10016836-10016916 6.76e-03 10_[+4(1.60e-05)]_62 chrII:10369777-10369857 1.41e-02 31_[+2(3.74e-05)]_41 chrIV:1687305-1687385 9.65e-01 80 chrIII:4542497-4542577 6.56e-02 80 chrI:2466404-2466484 2.26e-01 80 chrII:9255123-9255203 6.95e-01 80 chrI:3786244-3786324 6.17e-03 80 chrV:7983712-7983792 1.23e-01 80 chrII:14900407-14900487 1.35e-01 80 chrX:12210867-12210947 1.80e-01 80 chrI:2487854-2487934 8.58e-01 80 chrIV:12845790-12845870 3.97e-02 80 chrI:5448449-5448529 6.89e-01 80 chrIII:13064783-13064863 6.78e-01 80 chrI:1628837-1628917 2.02e-01 80 chrIII:11848452-11848532 7.19e-01 80 chrII:10830547-10830627 2.02e-01 80 chrIII:4068153-4068233 2.09e-01 35_[+1(7.06e-05)]_37 chrX:5896071-5896151 5.21e-02 10_[+3(8.98e-05)]_62 chrIV:1906950-1907030 6.05e-03 62_[+5(1.11e-05)]_10 chrII:1338338-1338418 3.62e-02 80 chrM:5139-5219 5.88e-01 80 chrIV:15816380-15816460 1.29e-01 80 chrIII:4105059-4105139 6.50e-01 80 chrX:17003824-17003904 1.33e-01 60_[+1(7.06e-05)]_12 chrV:11641614-11641694 6.65e-01 80 chrV:13170589-13170669 1.66e-01 80 chrIII:10436197-10436277 8.44e-02 32_[+2(3.74e-05)]_40 chrI:13495235-13495315 1.06e-01 70_[+1(7.06e-05)]_2 chrIV:15561470-15561550 8.87e-03 47_[+4(1.60e-05)]_[+4(1.60e-05)]_\ [+4(1.60e-05)]_9 chrI:10469092-10469172 3.88e-01 80 chrV:14443604-14443684 8.66e-01 80 chrIV:6648714-6648794 2.36e-02 6_[+5(1.11e-05)]_66 chrI:10175360-10175440 8.27e-02 80 chrX:7655658-7655738 2.97e-01 80 chrX:933037-933117 3.28e-01 80 chrII:8997680-8997760 1.80e-01 80 chrX:14649431-14649511 6.43e-01 80 chrIV:2193078-2193158 5.16e-01 80 chrII:8137430-8137510 3.46e-01 80 chrX:13187446-13187526 3.53e-01 35_[+3(8.98e-05)]_37 chrV:13409240-13409320 1.90e-01 80 chrII:9838568-9838648 6.92e-02 80 chrII:3055733-3055813 1.29e-01 80 chrV:14425288-14425368 1.79e-01 80 chrIV:1845128-1845208 1.03e-02 [+4(6.05e-05)]_72 chrIII:5720642-5720722 1.35e-01 80 chrV:6658914-6658994 1.86e-02 62_[+4(1.60e-05)]_[+4(1.60e-05)]_2 chrX:2730030-2730110 2.59e-03 33_[+2(3.74e-05)]_39 chrIII:10811216-10811296 2.68e-01 80 chrX:16484799-16484879 5.69e-04 30_[+3(1.83e-05)]_42 chrI:7031496-7031576 2.98e-01 80 chrI:1598522-1598602 2.89e-01 80 chrIV:2656594-2656674 2.48e-02 57_[+4(2.83e-05)]_15 chrIII:3322479-3322559 6.61e-01 80 chrV:19356903-19356983 1.33e-01 80 chrI:3307644-3307724 5.79e-01 80 chrV:4552870-4552950 4.61e-01 80 chrIII:11093624-11093704 4.78e-01 80 chrIII:7812581-7812661 7.33e-02 11_[+2(3.74e-05)]_61 chrI:788425-788505 6.74e-01 80 chrII:9760626-9760706 1.43e-01 8_[+5(7.48e-05)]_64 chrII:6838430-6838510 4.39e-06 4_[+4(1.60e-05)]_41_[+1(2.86e-05)]_\ 19 chrII:7894882-7894962 9.86e-01 80 chrV:14491290-14491370 1.80e-02 80 chrII:8951403-8951483 9.49e-01 80 chrI:13422623-13422703 2.61e-02 8_[+3(5.74e-05)]_64 chrV:14688967-14689047 2.46e-01 80 chrI:4224859-4224939 2.06e-02 80 chrX:12183184-12183264 6.43e-01 80 chrV:9561940-9562020 2.34e-01 64_[+1(2.86e-05)]_8 chrI:895976-896056 1.80e-01 80 chrIV:7156402-7156482 1.44e-01 80 chrIV:11605088-11605168 1.60e-01 80 chrIII:5999453-5999533 7.48e-01 80 chrI:879860-879940 2.43e-03 70_[+5(2.49e-05)]_2 chrII:10662855-10662935 3.97e-01 80 chrIV:7830292-7830372 3.24e-01 80 chrIV:15021057-15021137 6.96e-01 80 chrX:8566435-8566515 9.65e-01 80 chrV:13016975-13017055 6.97e-01 80 chrV:311656-311736 7.75e-02 40_[+2(3.74e-05)]_32 chrI:2464695-2464775 5.21e-03 32_[+5(1.11e-05)]_40 chrV:20424979-20425059 6.04e-02 46_[+2(3.74e-05)]_26 chrV:7746048-7746128 3.93e-01 80 chrV:16022772-16022852 7.23e-01 80 chrII:1134609-1134689 1.97e-01 80 chrX:12883930-12884010 2.94e-01 80 chrII:12010090-12010170 2.56e-01 80 chrIII:8265897-8265977 2.14e-01 80 chrI:10469297-10469377 2.05e-02 17_[+3(5.74e-05)]_55 chrIII:6537386-6537466 8.13e-01 80 chrIII:9310059-9310139 1.18e-01 80 chrIII:4505870-4505950 6.72e-01 80 chrIII:10856989-10857069 9.27e-01 80 chrI:9846383-9846463 3.33e-02 45_[+5(6.42e-05)]_27 chrX:2731982-2732062 2.79e-02 1_[+3(1.05e-05)]_71 chrX:4123451-4123531 2.74e-03 68_[+3(2.45e-05)]_4 chrII:13460500-13460580 4.86e-02 12_[+2(3.74e-05)]_60 chrII:4506779-4506859 8.05e-04 11_[+5(1.11e-05)]_42_[+1(6.02e-05)]_\ 11 chrV:7820432-7820512 7.83e-02 72_[+2(3.74e-05)] chrIII:13486082-13486162 1.65e-02 80 chrII:5303872-5303952 8.08e-01 80 chrIV:14032782-14032862 1.41e-01 80 chrX:14970447-14970527 3.41e-01 80 chrI:7951772-7951852 2.78e-04 80 chrIII:4404499-4404579 3.87e-01 80 chrIII:6551505-6551585 4.09e-01 80 chrIV:13533202-13533282 1.51e-01 24_[+1(2.86e-05)]_48 chrIV:385242-385322 6.58e-01 80 chrII:5691550-5691630 5.48e-01 80 chrX:601487-601567 1.11e-02 41_[+4(2.83e-05)]_31 chrIII:13293273-13293353 4.06e-01 80 chrII:8811189-8811269 2.79e-01 80 chrIII:9703931-9704011 5.68e-04 10_[+5(4.51e-05)]_12_[+4(1.60e-05)]_\ [+4(6.05e-05)]_34 chrIV:16663783-16663863 7.54e-04 16_[+4(1.60e-05)]_56 chrIII:4037462-4037542 3.24e-01 80 chrIII:6431890-6431970 1.67e-01 14_[+4(1.60e-05)]_58 chrI:7375028-7375108 8.19e-03 80 chrX:1118897-1118977 3.30e-01 80 chrI:6284758-6284838 5.95e-01 80 chrII:5512095-5512175 1.18e-01 80 chrIV:1824177-1824257 4.92e-02 66_[+1(1.28e-05)]_6 chrIII:13340670-13340750 7.11e-02 80 chrIV:12012567-12012647 4.43e-01 80 chrV:20832857-20832937 5.68e-02 11_[+3(6.51e-05)]_61 chrII:5724990-5725070 1.54e-01 80 chrI:8692577-8692657 1.45e-01 80 chrX:2013078-2013158 6.86e-01 80 chrII:4456258-4456338 7.01e-02 52_[+1(1.28e-05)]_20 chrX:2807543-2807623 1.33e-01 80 chrX:13318742-13318822 3.62e-03 [+5(8.80e-05)]_72 chrX:4307699-4307779 2.34e-01 11_[+3(8.98e-05)]_61 chrIII:5564991-5565071 1.01e-01 8_[+3(3.53e-05)]_64 chrV:20879460-20879540 5.41e-03 38_[+5(1.11e-05)]_34 chrIII:10811416-10811496 5.80e-02 9_[+3(5.74e-05)]_63 chrII:14940495-14940575 8.37e-02 80 chrIII:671190-671270 4.17e-03 17_[+5(1.11e-05)]_55 chrII:11072680-11072760 2.32e-01 80 chrII:759903-759983 1.47e-04 42_[+5(1.11e-05)]_30 chrII:7281939-7282019 1.99e-01 80 chrX:7651374-7651454 6.98e-01 80 chrIV:13487150-13487230 6.55e-01 80 chrI:9097991-9098071 3.34e-04 52_[+5(4.51e-05)]_20 chrV:11375229-11375309 5.04e-01 80 chrIII:10284372-10284452 6.21e-02 56_[+1(7.06e-05)]_16 chrIV:9642159-9642239 1.41e-01 80 chrI:3176522-3176602 7.84e-02 70_[+1(6.02e-05)]_2 chrV:1307408-1307488 4.56e-02 80 chrIV:8145351-8145431 1.24e-02 35_[+5(1.11e-05)]_37 chrII:13964526-13964606 6.39e-01 80 chrV:11933350-11933430 2.26e-01 80 chrX:3126302-3126382 5.63e-02 11_[+3(9.99e-05)]_61 chrII:11753132-11753212 2.06e-02 20_[+4(4.82e-05)]_52 chrX:1018649-1018729 1.50e-01 47_[+1(1.28e-05)]_25 chrX:13143548-13143628 8.83e-01 80 chrII:10804507-10804587 1.98e-03 23_[+3(5.74e-05)]_22_[+4(4.82e-05)]_\ 19 chrIII:11936082-11936162 1.05e-02 59_[+5(4.51e-05)]_13 chrIII:9133734-9133814 5.82e-03 29_[+4(1.60e-05)]_[+4(1.60e-05)]_25_\ [+4(1.60e-05)]_2 chrI:6823349-6823429 1.71e-03 42_[+4(1.60e-05)]_30 chrI:933476-933556 1.09e-02 80 chrV:12026924-12027004 2.95e-01 80 chrX:15630818-15630898 5.44e-01 80 chrV:126747-126827 1.02e-03 62_[+5(5.36e-05)]_10 chrIII:6214407-6214487 1.01e-01 80 chrIV:11310782-11310862 1.54e-03 40_[+3(1.83e-05)]_32 chrIV:7453909-7453989 5.95e-01 80 chrIII:2535343-2535423 1.35e-01 23_[+5(4.51e-05)]_49 chrI:6810514-6810594 1.71e-01 80 chrI:6341981-6342061 1.26e-01 10_[+2(3.74e-05)]_62 chrV:9964468-9964548 1.52e-01 20_[+4(2.83e-05)]_13_[+4(2.83e-05)]_\ 31 chrX:9737907-9737987 3.24e-01 80 chrI:9429566-9429646 3.03e-01 80 chrIII:9583274-9583354 4.35e-01 80 chrX:1601680-1601760 6.34e-02 80 chrIII:10123779-10123859 2.67e-02 4_[+3(5.74e-05)]_68 chrII:10202419-10202499 9.57e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************