******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-13.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:18720217-18720297 1.0000 80 chrV:18709408-18709488 1.0000 80 chrIII:7554797-7554877 1.0000 80 chrII:2570543-2570623 1.0000 80 chrIII:3499993-3500073 1.0000 80 chrV:18710249-18710329 1.0000 80 chrV:16622036-16622116 1.0000 80 chrX:12337990-12338070 1.0000 80 chrII:3267951-3268031 1.0000 80 chrII:5667662-5667742 1.0000 80 chrIV:14013782-14013862 1.0000 80 chrX:8156107-8156187 1.0000 80 chrV:14689534-14689614 1.0000 80 chrI:12229393-12229473 1.0000 80 chrV:18712249-18712329 1.0000 80 chrI:6136593-6136673 1.0000 80 chrV:4181962-4182042 1.0000 80 chrI:9176279-9176359 1.0000 80 chrX:8818097-8818177 1.0000 80 chrI:6051120-6051200 1.0000 80 chrX:3994576-3994656 1.0000 80 chrV:18714058-18714138 1.0000 80 chrV:14855809-14855889 1.0000 80 chrX:3914362-3914442 1.0000 80 chrIII:10856983-10857063 1.0000 80 chrIV:16684362-16684442 1.0000 80 chrX:16602642-16602722 1.0000 80 chrI:4132294-4132374 1.0000 80 chrIV:5371089-5371169 1.0000 80 chrI:13421204-13421284 1.0000 80 chrIV:17108353-17108433 1.0000 80 chrIV:15289651-15289731 1.0000 80 chrX:6286344-6286424 1.0000 80 chrII:10545389-10545469 1.0000 80 chrX:3348031-3348111 1.0000 80 chrX:10395948-10396028 1.0000 80 chrIII:9104219-9104299 1.0000 80 chrII:6565251-6565331 1.0000 80 chrV:5284432-5284512 1.0000 80 chrI:5611760-5611840 1.0000 80 chrIII:10432234-10432314 1.0000 80 chrIII:3664369-3664449 1.0000 80 chrII:14166515-14166595 1.0000 80 chrI:1575746-1575826 1.0000 80 chrII:610-690 1.0000 80 chrV:18723669-18723749 1.0000 80 chrIII:8650353-8650433 1.0000 80 chrIV:11928486-11928566 1.0000 80 chrV:16553159-16553239 1.0000 80 chrI:8048628-8048708 1.0000 80 chrIII:6805632-6805712 1.0000 80 chrV:1228892-1228972 1.0000 80 chrIV:2802368-2802448 1.0000 80 chrIII:182416-182496 1.0000 80 chrX:17611200-17611280 1.0000 80 chrX:4789131-4789211 1.0000 80 chrV:17324008-17324088 1.0000 80 chrV:19722988-19723068 1.0000 80 chrX:10203565-10203645 1.0000 80 chrI:11609192-11609272 1.0000 80 chrIV:17099286-17099366 1.0000 80 chrIII:7551166-7551246 1.0000 80 chrI:11584771-11584851 1.0000 80 chrX:13415148-13415228 1.0000 80 chrV:15505224-15505304 1.0000 80 chrX:9373127-9373207 1.0000 80 chrI:12004909-12004989 1.0000 80 chrX:9296752-9296832 1.0000 80 chrX:3969510-3969590 1.0000 80 chrII:7001610-7001690 1.0000 80 chrIV:16399109-16399189 1.0000 80 chrIV:7487910-7487990 1.0000 80 chrX:8650687-8650767 1.0000 80 chrV:18707049-18707129 1.0000 80 chrX:16928300-16928380 1.0000 80 chrV:7231001-7231081 1.0000 80 chrV:20832729-20832809 1.0000 80 chrX:12843674-12843754 1.0000 80 chrX:14115647-14115727 1.0000 80 chrV:9583105-9583185 1.0000 80 chrX:4524660-4524740 1.0000 80 chrIII:11091865-11091945 1.0000 80 chrI:9249383-9249463 1.0000 80 chrI:2487845-2487925 1.0000 80 chrIII:8653042-8653122 1.0000 80 chrII:6898200-6898280 1.0000 80 chrII:11633103-11633183 1.0000 80 chrV:14524395-14524475 1.0000 80 chrX:14804849-14804929 1.0000 80 chrX:5407374-5407454 1.0000 80 chrIII:4362548-4362628 1.0000 80 chrIV:9773725-9773805 1.0000 80 chrIII:1218358-1218438 1.0000 80 chrV:18507080-18507160 1.0000 80 chrX:9225520-9225600 1.0000 80 chrII:8137464-8137544 1.0000 80 chrX:12890273-12890353 1.0000 80 chrIV:1687290-1687370 1.0000 80 chrIII:13293217-13293297 1.0000 80 chrI:12601765-12601845 1.0000 80 chrI:11579734-11579814 1.0000 80 chrIII:7642124-7642204 1.0000 80 chrIII:13225184-13225264 1.0000 80 chrX:16217957-16218037 1.0000 80 chrX:14504417-14504497 1.0000 80 chrX:2879843-2879923 1.0000 80 chrI:12225419-12225499 1.0000 80 chrIII:5954058-5954138 1.0000 80 chrIV:842811-842891 1.0000 80 chrIII:535401-535481 1.0000 80 chrII:11959419-11959499 1.0000 80 chrV:2674024-2674104 1.0000 80 chrV:14876375-14876455 1.0000 80 chrI:11198603-11198683 1.0000 80 chrX:16611509-16611589 1.0000 80 chrX:8646511-8646591 1.0000 80 chrIV:2805703-2805783 1.0000 80 chrIII:7030542-7030622 1.0000 80 chrV:8235369-8235449 1.0000 80 chrII:1714897-1714977 1.0000 80 chrX:8971603-8971683 1.0000 80 chrII:5019277-5019357 1.0000 80 chrIV:1981110-1981190 1.0000 80 chrX:12367694-12367774 1.0000 80 chrIII:3476320-3476400 1.0000 80 chrII:7708751-7708831 1.0000 80 chrIII:4428951-4429031 1.0000 80 chrII:7756946-7757026 1.0000 80 chrII:4942523-4942603 1.0000 80 chrX:8386173-8386253 1.0000 80 chrII:5293444-5293524 1.0000 80 chrI:4175908-4175988 1.0000 80 chrX:5319364-5319444 1.0000 80 chrIII:12399837-12399917 1.0000 80 chrII:2860283-2860363 1.0000 80 chrII:6248664-6248744 1.0000 80 chrV:11239331-11239411 1.0000 80 chrI:14606041-14606121 1.0000 80 chrI:1415963-1416043 1.0000 80 chrII:5836582-5836662 1.0000 80 chrIV:16400877-16400957 1.0000 80 chrV:15553992-15554072 1.0000 80 chrIII:3175112-3175192 1.0000 80 chrII:5057441-5057521 1.0000 80 chrII:4238070-4238150 1.0000 80 chrIII:4905627-4905707 1.0000 80 chrV:12332027-12332107 1.0000 80 chrIV:4930853-4930933 1.0000 80 chrII:5399344-5399424 1.0000 80 chrIII:4426752-4426832 1.0000 80 chrII:5577187-5577267 1.0000 80 chrV:4731513-4731593 1.0000 80 chrI:3873928-3874008 1.0000 80 chrIV:14872548-14872628 1.0000 80 chrX:12693205-12693285 1.0000 80 chrIV:16398320-16398400 1.0000 80 chrIII:3916814-3916894 1.0000 80 chrIV:11310785-11310865 1.0000 80 chrIII:8106625-8106705 1.0000 80 chrX:7794458-7794538 1.0000 80 chrI:13310420-13310500 1.0000 80 chrI:14721589-14721669 1.0000 80 chrI:2935710-2935790 1.0000 80 chrX:11935068-11935148 1.0000 80 chrX:5354642-5354722 1.0000 80 chrI:4633655-4633735 1.0000 80 chrX:11252628-11252708 1.0000 80 chrII:3521450-3521530 1.0000 80 chrIV:9191335-9191415 1.0000 80 chrX:1858787-1858867 1.0000 80 chrIII:10624764-10624844 1.0000 80 chrV:15551829-15551909 1.0000 80 chrX:10821252-10821332 1.0000 80 chrV:12780450-12780530 1.0000 80 chrV:20694098-20694178 1.0000 80 chrI:9268902-9268982 1.0000 80 chrI:9605735-9605815 1.0000 80 chrII:9566195-9566275 1.0000 80 chrIII:4568713-4568793 1.0000 80 chrIV:3524814-3524894 1.0000 80 chrX:4444232-4444312 1.0000 80 chrIII:1604673-1604753 1.0000 80 chrIII:8768038-8768118 1.0000 80 chrI:5316192-5316272 1.0000 80 chrIII:4171149-4171229 1.0000 80 chrV:19126058-19126138 1.0000 80 chrIV:1388216-1388296 1.0000 80 chrV:18723902-18723982 1.0000 80 chrII:12042320-12042400 1.0000 80 chrIII:1824649-1824729 1.0000 80 chrV:1875766-1875846 1.0000 80 chrIV:620478-620558 1.0000 80 chrX:5707996-5708076 1.0000 80 chrII:5772958-5773038 1.0000 80 chrIV:11026120-11026200 1.0000 80 chrV:19522609-19522689 1.0000 80 chrII:12678286-12678366 1.0000 80 chrX:12458151-12458231 1.0000 80 chrX:15297407-15297487 1.0000 80 chrIV:9316176-9316256 1.0000 80 chrIV:9477729-9477809 1.0000 80 chrIV:16382357-16382437 1.0000 80 chrIII:4426953-4427033 1.0000 80 chrX:13653654-13653734 1.0000 80 chrI:11910912-11910992 1.0000 80 chrX:1880842-1880922 1.0000 80 chrI:4967564-4967644 1.0000 80 chrV:53415-53495 1.0000 80 chrII:3567721-3567801 1.0000 80 chrIV:13386217-13386297 1.0000 80 chrIII:640527-640607 1.0000 80 chrI:6164330-6164410 1.0000 80 chrIII:1122422-1122502 1.0000 80 chrIV:16863644-16863724 1.0000 80 chrIII:4508477-4508557 1.0000 80 chrX:10963803-10963883 1.0000 80 chrI:1175816-1175896 1.0000 80 chrIII:11236968-11237048 1.0000 80 chrIII:5555078-5555158 1.0000 80 chrIV:143979-144059 1.0000 80 chrIV:17087559-17087639 1.0000 80 chrII:3439356-3439436 1.0000 80 chrX:9637884-9637964 1.0000 80 chrV:1003936-1004016 1.0000 80 chrII:6741573-6741653 1.0000 80 chrX:6371400-6371480 1.0000 80 chrIII:5211186-5211266 1.0000 80 chrII:14528442-14528522 1.0000 80 chrIII:6158744-6158824 1.0000 80 chrII:8547092-8547172 1.0000 80 chrI:9267178-9267258 1.0000 80 chrI:1823221-1823301 1.0000 80 chrV:11113333-11113413 1.0000 80 chrI:13331080-13331160 1.0000 80 chrI:5176381-5176461 1.0000 80 chrX:16604723-16604803 1.0000 80 chrX:13121245-13121325 1.0000 80 chrI:13297707-13297787 1.0000 80 chrV:13962158-13962238 1.0000 80 chrX:10132656-10132736 1.0000 80 chrV:12596980-12597060 1.0000 80 chrX:9622667-9622747 1.0000 80 chrIV:11549879-11549959 1.0000 80 chrII:5292301-5292381 1.0000 80 chrI:1958505-1958585 1.0000 80 chrX:6903159-6903239 1.0000 80 chrX:17030514-17030594 1.0000 80 chrI:11323370-11323450 1.0000 80 chrX:6867851-6867931 1.0000 80 chrIV:16776059-16776139 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ceh-13/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ceh-13.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.252 C 0.248 G 0.243 T 0.257 Background letter frequencies (from file dataset with add-one prior applied): A 0.252 C 0.248 G 0.243 T 0.257 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TCGAACCC MEME-1 width = 8 sites = 58 llr = 479 E-value = 1.3e-024 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::a6::2 pos.-specific C :9:::7a7 probability G ::a:1::1 matrix T a1::33:1 bits 2.0 * ** 1.8 * ** * 1.6 **** * 1.4 **** * Relative 1.2 **** * Entropy 1.0 **** ** (11.9 bits) 0.8 **** ** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCGAACCC consensus TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:13121245-13121325 31 1.50e-05 cgaccgggaa tcgaaccc gggccgcccg chrII:3439356-3439436 53 1.50e-05 AATGCGGGGC TCGAACCC GCGACAACCA chrII:3567721-3567801 58 1.50e-05 AATGCGGGGC TCGAACCC GCGACAACCA chrIV:620478-620558 58 1.50e-05 GGTCGCCGGT TCGAACCC GGCGAGGACC chrIV:1388216-1388296 15 1.50e-05 ATGCCGGGAA TCGAACCC GGGCCGCGTG chrIII:1604673-1604753 44 1.50e-05 TTGCGGGGAA TCGAACCC CGGCCTTATG chrIII:7642124-7642204 49 1.50e-05 TTGCGGGGAA TCGAACCC CGGCCTTATG chrIV:11928486-11928566 7 1.50e-05 TGGGAT TCGAACCC ACGCACCCAT chrIII:8650353-8650433 43 1.50e-05 GAACCGGGAA TCGAACCC GGGACCTCTC chrIV:16684362-16684442 36 1.50e-05 TCGGGGGGAA TCGAACCC CGGTCGAATG chrI:6051120-6051200 50 1.50e-05 AGAGTGGGAT TCGAACCC ACGCCCCCGA chrIV:14013782-14013862 38 1.50e-05 GTATGGGGAA TCGAACCC CAGACTTCTC chrV:16622036-16622116 38 1.50e-05 CCTAGGGGAC TCGAACCC CTGACCTTAA chrIV:3524814-3524894 59 3.05e-05 GATTGCAGGT TCGAATCC TGCCGTGGTC chrX:8971603-8971683 60 3.05e-05 CCGCGTAGGT TCGAATCC TGCTGACTGC chrIII:535401-535481 46 3.05e-05 GGTCACTGGT TCGAATCC GGTTCGACGG chrV:14689534-14689614 63 3.05e-05 GGTCACTGGT TCGAATCC GGTTCGACGG chrI:9268902-9268982 41 4.58e-05 GAGCCGGGGA TCGATCCC GGGACCTCTC chrII:11959419-11959499 10 4.58e-05 GCCGCCGGT TCGATCCC GGCCAGGACC chrII:3521450-3521530 52 6.11e-05 GCGGCTGGAA TCGAACCA GCGTCGCCAC chrIII:7030542-7030622 30 6.11e-05 CATGCTGGAA TCGAACCA GCGACCTTCT chrX:8650687-8650767 37 6.11e-05 TCGGGCGGGC TCGAACCA CCGACCTTCT chrIII:9104219-9104299 3 6.11e-05 GC TCGAACCA CCAACCTTTC chrX:16602642-16602722 7 6.11e-05 TGGGGG TCGAACCA TTAACCCCCC chrX:12843674-12843754 68 7.56e-05 GGTCGGTGGT TCGAGCCC GCCCG chrI:11584771-11584851 70 7.56e-05 TGTCGCGGGT TCGAGCCC CGC chrI:1575746-1575826 28 7.56e-05 GATTGCAGGT TCGAGCCC TGCCTGGGTC chrI:6136593-6136673 58 7.56e-05 TGTCGCGGGT TCGAGCCC CGCATTGGGC chrIV:16400877-16400957 72 9.14e-05 CGACGCTGGT TCGATTCC A chrII:5293444-5293524 61 9.14e-05 AGGCCGGGGT TCGATTCC CCGCAACGGA chrX:8646511-8646591 22 9.14e-05 CGGCCCGGGT TCGATTCC CGGCATGGGA chrV:2674024-2674104 39 9.14e-05 GGTCGCTGGT TCGATTCC AGCATGAGGC chrIV:842811-842891 51 9.14e-05 CGGCCCGGGT TCGATTCC CGGCATGGGA chrII:6898200-6898280 47 9.14e-05 CGGCCCGGGT TCGATTCC CGGCATGGGA chrII:7001610-7001690 70 9.14e-05 AGTCTGGGGT TCGATTCC CCA chrX:6286344-6286424 30 9.14e-05 AGTCTGGGGT TCGATTCC CCATACCTCC chrIV:11026120-11026200 38 1.07e-04 ACCGGTGGTG TCGAACCT GGGAGTATAA chrII:5057441-5057521 21 1.07e-04 CCAGCAGGGG TCGAACCT GCGACCTTGG chrIII:1218358-1218438 33 1.07e-04 CCAGCAGGGG TCGAACCT GCGACCTTGG chrX:12337990-12338070 23 1.07e-04 ACGGCAGGAC TCGAACCT GCAATCCCCA chrIV:14872548-14872628 15 1.23e-04 CTGCCTCTCC TCGAATCA TCATCATATA chrIV:143979-144059 57 1.53e-04 GACTGCAGGT TCGAGTCC TGCCTCGGTC chrI:12225419-12225499 22 1.53e-04 GCGAGTGGTT TCGATCCA CCGACCTCTG chrX:9373127-9373207 38 1.53e-04 GCGAGTGGTT TCGATCCA CCGACCTCTG chrX:4789131-4789211 55 1.53e-04 GGTCAGGGGT TCGAGTCC CCTAGGTGGC chrII:6565251-6565331 51 1.53e-04 GGTCAGGGGT TCGAGTCC CCTAGGTGGC chrII:5667662-5667742 15 1.53e-04 GAACCAATCT TCGATCCA GAAACCGATA chrII:5577187-5577267 28 1.68e-04 CTAGCCGGGT TCGAACCG GCGATCTTCT chrX:16604723-16604803 12 2.00e-04 CGGCCGGGAA TTGAACCC GGGTCTCGCA chrX:12458151-12458231 40 2.00e-04 GTATGGGGAA TTGAACCC CAGCCCTCTC chrII:12042320-12042400 33 2.00e-04 TAAAATATAT TCGAATCT AAAATGAAAA chrIII:4428951-4429031 17 2.00e-04 GTATGGGGAA TTGAACCC CAGCCCTCTC chrX:12890273-12890353 27 2.00e-04 GCACGGGGAA TTGAACCC CGGACTTCTC chrV:19126058-19126138 40 2.16e-04 GGTCACCAGT TCGATCCT GGTTCGGGGC chrIII:8653042-8653122 67 2.16e-04 GGTCACCAGT TCGATCCT GGTTCG chrV:12596980-12597060 65 2.62e-04 CACTCGGCCA TCGAATCG ATCGCTCA chrI:1823221-1823301 51 2.62e-04 CAATCTTCTC TCGAATCG CGAGGCCTCG chrX:5407374-5407454 54 4.01e-04 CCGGTGAGGC TCGAACTC ACGACCTTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:13121245-13121325 1.5e-05 30_[+1]_42 chrII:3439356-3439436 1.5e-05 52_[+1]_20 chrII:3567721-3567801 1.5e-05 57_[+1]_15 chrIV:620478-620558 1.5e-05 57_[+1]_15 chrIV:1388216-1388296 1.5e-05 14_[+1]_58 chrIII:1604673-1604753 1.5e-05 43_[+1]_29 chrIII:7642124-7642204 1.5e-05 48_[+1]_24 chrIV:11928486-11928566 1.5e-05 6_[+1]_66 chrIII:8650353-8650433 1.5e-05 42_[+1]_30 chrIV:16684362-16684442 1.5e-05 35_[+1]_37 chrI:6051120-6051200 1.5e-05 49_[+1]_23 chrIV:14013782-14013862 1.5e-05 37_[+1]_35 chrV:16622036-16622116 1.5e-05 37_[+1]_35 chrIV:3524814-3524894 3.1e-05 58_[+1]_14 chrX:8971603-8971683 3.1e-05 59_[+1]_13 chrIII:535401-535481 3.1e-05 45_[+1]_27 chrV:14689534-14689614 3.1e-05 62_[+1]_10 chrI:9268902-9268982 4.6e-05 40_[+1]_32 chrII:11959419-11959499 4.6e-05 9_[+1]_63 chrII:3521450-3521530 6.1e-05 51_[+1]_21 chrIII:7030542-7030622 6.1e-05 29_[+1]_43 chrX:8650687-8650767 6.1e-05 36_[+1]_36 chrIII:9104219-9104299 6.1e-05 2_[+1]_70 chrX:16602642-16602722 6.1e-05 6_[+1]_66 chrX:12843674-12843754 7.6e-05 67_[+1]_5 chrI:11584771-11584851 7.6e-05 69_[+1]_3 chrI:1575746-1575826 7.6e-05 27_[+1]_45 chrI:6136593-6136673 7.6e-05 57_[+1]_15 chrIV:16400877-16400957 9.1e-05 71_[+1]_1 chrII:5293444-5293524 9.1e-05 60_[+1]_12 chrX:8646511-8646591 9.1e-05 21_[+1]_51 chrV:2674024-2674104 9.1e-05 38_[+1]_34 chrIV:842811-842891 9.1e-05 50_[+1]_22 chrII:6898200-6898280 9.1e-05 46_[+1]_26 chrII:7001610-7001690 9.1e-05 69_[+1]_3 chrX:6286344-6286424 9.1e-05 29_[+1]_43 chrIV:11026120-11026200 0.00011 37_[+1]_35 chrII:5057441-5057521 0.00011 20_[+1]_52 chrIII:1218358-1218438 0.00011 32_[+1]_40 chrX:12337990-12338070 0.00011 22_[+1]_50 chrIV:14872548-14872628 0.00012 14_[+1]_58 chrIV:143979-144059 0.00015 56_[+1]_16 chrI:12225419-12225499 0.00015 21_[+1]_51 chrX:9373127-9373207 0.00015 37_[+1]_35 chrX:4789131-4789211 0.00015 54_[+1]_18 chrII:6565251-6565331 0.00015 50_[+1]_22 chrII:5667662-5667742 0.00015 14_[+1]_58 chrII:5577187-5577267 0.00017 27_[+1]_45 chrX:16604723-16604803 0.0002 11_[+1]_61 chrX:12458151-12458231 0.0002 39_[+1]_33 chrII:12042320-12042400 0.0002 32_[+1]_40 chrIII:4428951-4429031 0.0002 16_[+1]_56 chrX:12890273-12890353 0.0002 26_[+1]_46 chrV:19126058-19126138 0.00022 39_[+1]_33 chrIII:8653042-8653122 0.00022 66_[+1]_6 chrV:12596980-12597060 0.00026 64_[+1]_8 chrI:1823221-1823301 0.00026 50_[+1]_22 chrX:5407374-5407454 0.0004 53_[+1]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCGAACCC width=8 seqs=58 chrX:13121245-13121325 ( 31) TCGAACCC 1 chrII:3439356-3439436 ( 53) TCGAACCC 1 chrII:3567721-3567801 ( 58) TCGAACCC 1 chrIV:620478-620558 ( 58) TCGAACCC 1 chrIV:1388216-1388296 ( 15) TCGAACCC 1 chrIII:1604673-1604753 ( 44) TCGAACCC 1 chrIII:7642124-7642204 ( 49) TCGAACCC 1 chrIV:11928486-11928566 ( 7) TCGAACCC 1 chrIII:8650353-8650433 ( 43) TCGAACCC 1 chrIV:16684362-16684442 ( 36) TCGAACCC 1 chrI:6051120-6051200 ( 50) TCGAACCC 1 chrIV:14013782-14013862 ( 38) TCGAACCC 1 chrV:16622036-16622116 ( 38) TCGAACCC 1 chrIV:3524814-3524894 ( 59) TCGAATCC 1 chrX:8971603-8971683 ( 60) TCGAATCC 1 chrIII:535401-535481 ( 46) TCGAATCC 1 chrV:14689534-14689614 ( 63) TCGAATCC 1 chrI:9268902-9268982 ( 41) TCGATCCC 1 chrII:11959419-11959499 ( 10) TCGATCCC 1 chrII:3521450-3521530 ( 52) TCGAACCA 1 chrIII:7030542-7030622 ( 30) TCGAACCA 1 chrX:8650687-8650767 ( 37) TCGAACCA 1 chrIII:9104219-9104299 ( 3) TCGAACCA 1 chrX:16602642-16602722 ( 7) TCGAACCA 1 chrX:12843674-12843754 ( 68) TCGAGCCC 1 chrI:11584771-11584851 ( 70) TCGAGCCC 1 chrI:1575746-1575826 ( 28) TCGAGCCC 1 chrI:6136593-6136673 ( 58) TCGAGCCC 1 chrIV:16400877-16400957 ( 72) TCGATTCC 1 chrII:5293444-5293524 ( 61) TCGATTCC 1 chrX:8646511-8646591 ( 22) TCGATTCC 1 chrV:2674024-2674104 ( 39) TCGATTCC 1 chrIV:842811-842891 ( 51) TCGATTCC 1 chrII:6898200-6898280 ( 47) TCGATTCC 1 chrII:7001610-7001690 ( 70) TCGATTCC 1 chrX:6286344-6286424 ( 30) TCGATTCC 1 chrIV:11026120-11026200 ( 38) TCGAACCT 1 chrII:5057441-5057521 ( 21) TCGAACCT 1 chrIII:1218358-1218438 ( 33) TCGAACCT 1 chrX:12337990-12338070 ( 23) TCGAACCT 1 chrIV:14872548-14872628 ( 15) TCGAATCA 1 chrIV:143979-144059 ( 57) TCGAGTCC 1 chrI:12225419-12225499 ( 22) TCGATCCA 1 chrX:9373127-9373207 ( 38) TCGATCCA 1 chrX:4789131-4789211 ( 55) TCGAGTCC 1 chrII:6565251-6565331 ( 51) TCGAGTCC 1 chrII:5667662-5667742 ( 15) TCGATCCA 1 chrII:5577187-5577267 ( 28) TCGAACCG 1 chrX:16604723-16604803 ( 12) TTGAACCC 1 chrX:12458151-12458231 ( 40) TTGAACCC 1 chrII:12042320-12042400 ( 33) TCGAATCT 1 chrIII:4428951-4429031 ( 17) TTGAACCC 1 chrX:12890273-12890353 ( 27) TTGAACCC 1 chrV:19126058-19126138 ( 40) TCGATCCT 1 chrIII:8653042-8653122 ( 67) TCGATCCT 1 chrV:12596980-12597060 ( 65) TCGAATCG 1 chrI:1823221-1823301 ( 51) TCGAATCG 1 chrX:5407374-5407454 ( 54) TCGAACTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.17794 E= 1.3e-024 -1250 -1250 -1250 196 -1250 191 -1250 -190 -1250 -1250 204 -1250 199 -1250 -1250 -1250 130 -1250 -101 1 -1250 144 -1250 35 -1250 199 -1250 -389 -70 144 -223 -109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 1.3e-024 0.000000 0.000000 0.000000 1.000000 0.000000 0.931034 0.000000 0.068966 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.620690 0.000000 0.120690 0.258621 0.000000 0.672414 0.000000 0.327586 0.000000 0.982759 0.000000 0.017241 0.155172 0.672414 0.051724 0.120690 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 regular expression -------------------------------------------------------------------------------- TCGA[AT][CT]CC -------------------------------------------------------------------------------- Time 8.86 secs. ******************************************************************************** ******************************************************************************** MOTIF TGMAAAAA MEME-2 width = 8 sites = 54 llr = 425 E-value = 1.5e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGMAAAAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::48aaa8 pos.-specific C 1:6::::: probability G :8:2:::: matrix T 92:::::2 bits 2.0 * * 1.8 *** 1.6 *** 1.4 *** Relative 1.2 ** **** Entropy 1.0 ** ***** (11.4 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGCAAAAA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGMAAAAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:13962158-13962238 60 1.57e-05 GCGCGGCAAC TGCAAAAA AGGGCGGAGC chrII:3439356-3439436 26 1.57e-05 TGTTACAAAC TGCAAAAA CATCAGCCCA chrI:1175816-1175896 52 1.57e-05 GCGGCACACT TGCAAAAA CCGTGCGCCC chrX:12458151-12458231 12 1.57e-05 CGATTAATAA TGCAAAAA ACTTATGGAG chrX:10821252-10821332 55 1.57e-05 ATGATGTTTC TGCAAAAA ACAAAAAATA chrII:3521450-3521530 24 1.57e-05 TATTCGCTTC TGCAAAAA GGAGTTGCCT chrI:4633655-4633735 48 1.57e-05 GTGCCAGGGT TGCAAAAA ATCATTTTCG chrIII:12399837-12399917 59 1.57e-05 AAAAAGGCGT TGCAAAAA CCGATAGGTT chrV:14876375-14876455 2 1.57e-05 T TGCAAAAA AGAATGCCCC chrII:14528442-14528522 15 3.17e-05 GTTAGAACTC TGAAAAAA CTAAAATTGC chrIII:5555078-5555158 10 3.17e-05 ATTGTCTAC TGAAAAAA TCTCTGCCTG chrII:8137464-8137544 12 3.17e-05 GCAGATTCGC TGAAAAAA AATGAAGTTG chrX:5407374-5407454 21 3.17e-05 AACCTGCAAA TGAAAAAA GAAAAATAAT chrV:18707049-18707129 3 3.17e-05 tt tgaaaaaa ttctggaatg chrIII:1824649-1824729 64 4.78e-05 GCGGCGCTCT TGCAAAAT CGCGCGCCG chrIV:11310785-11310865 65 4.78e-05 TGCGGGACTC TGCAAAAT TGAATTTT chrIV:16399109-16399189 17 4.78e-05 AAAGCGCGTT TGCAAAAT TTAAAGAGAC chrIII:5211186-5211266 23 6.30e-05 CCTTTCGCAT TGCGAAAA ACCACCGAGC chrII:6741573-6741653 32 6.30e-05 CTCCGGTGTC TGCGAAAA TTGTTGCGAG chrII:5399344-5399424 38 6.30e-05 GCGGCACAAT TGCGAAAA AGCGGGCCGC chrII:4238070-4238150 22 6.30e-05 GCGGCACACT TGCGAAAA TGCGTGCGGC chrIV:5371089-5371169 4 6.30e-05 CAT TGCGAAAA CGCGTGCCGC chrIII:3499993-3500073 67 6.30e-05 AAAGAGGATC TGCGAAAA TGGGAT chrIII:1604673-1604753 17 7.96e-05 AATCGGAATT TTCAAAAA TATATTCCGT chrII:1714897-1714977 38 7.96e-05 GAATACTCTT TTCAAAAA AGGCTATATC chrIII:10856983-10857063 62 7.96e-05 CCATGGTGAC TTCAAAAA CTTCAAGTTT chrI:6051120-6051200 22 7.96e-05 TATAAAATTG TTCAAAAA GAAACTGAAG chrV:18712249-18712329 50 7.96e-05 CCGCAAAATA TTCAAAAA CAGATAAACG chrII:12042320-12042400 45 9.59e-05 GAATCTAAAA TGAAAAAT CAGGTTTTCA chrIII:3175112-3175192 4 9.59e-05 AAA TGAAAAAT CCCCCAAAAA chrIII:3476320-3476400 68 9.59e-05 CTTAAATTCT TGAAAAAT TTACA chrIV:9773725-9773805 64 9.59e-05 ATTTCTCCGA TGAAAAAT TATTTCGCT chrI:1958505-1958585 22 1.11e-04 TGCGAGAAAA TGAGAAAA ACGGGAATTG chrII:11959419-11959499 69 1.28e-04 GTAGTTTTTC TTAAAAAA CAAA chrX:17611200-17611280 11 1.28e-04 GCTTCCGACG TTAAAAAA GTGTTCTTCA chrX:3914362-3914442 23 1.28e-04 TCATTGAAGA TTAAAAAA GATCAAAACG chrV:16622036-16622116 11 1.43e-04 CATGAAATTC CGCAAAAA ATCAAGCCAC chrX:8646511-8646591 61 1.59e-04 GAATTTTGAA TGGAAAAA GATTATGTTG chrI:4132294-4132374 64 1.59e-04 GCGTTCAAAT TGGAAAAA AACATTGCG chrI:5176381-5176461 57 1.90e-04 GTGCGCATGT TGCGAAAT ACCATGCGGC chrIII:4508477-4508557 31 1.90e-04 CGTTTTTTGA CGAAAAAA ATTGAAAATC chrIV:16382357-16382437 59 1.90e-04 ACAACAACAA CGAAAAAA AGAAGACTGA chrI:3873928-3874008 48 2.22e-04 cgccgcacat tgcAAAAC TGCAAATGGG chrII:5577187-5577267 2 2.22e-04 T TGCAAAAC CGTAGGTCCT chrV:20832729-20832809 67 2.70e-04 AAACATTATT TACAAAAA TTCAAT chrIII:6805632-6805712 66 2.70e-04 GCAGACCCGG AGCAAAAA TGCTACG chrIV:13386217-13386297 52 2.85e-04 GTGCTAGGCT TGCAAGAA GCAAACGCGC chrIV:17108353-17108433 25 3.01e-04 AGGGGATCTA TGAGAAAT CGATCTGCCG chrI:13331080-13331160 51 3.83e-04 ATGCAGGTCT AGAAAAAA AGGATTTCTG chrV:18723902-18723982 44 3.83e-04 ATTGGAAATA TAAAAAAA TATAGGATTT chrV:15551829-15551909 69 3.83e-04 TTAAAGGTCA TTAGAAAA GAGA chrX:7794458-7794538 42 4.28e-04 ACATCCACAA TGAAAGAA ATTGCGCAGA chrV:18507080-18507160 41 4.28e-04 TTGAAATTTA CGCAAAAT TTGCAAAGTT chrIV:17099286-17099366 13 4.28e-04 TGTCTCGGGG GGCAAAAA TGGGCGTGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGMAAAAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:13962158-13962238 1.6e-05 59_[+2]_13 chrII:3439356-3439436 1.6e-05 25_[+2]_47 chrI:1175816-1175896 1.6e-05 51_[+2]_21 chrX:12458151-12458231 1.6e-05 11_[+2]_61 chrX:10821252-10821332 1.6e-05 54_[+2]_18 chrII:3521450-3521530 1.6e-05 23_[+2]_49 chrI:4633655-4633735 1.6e-05 47_[+2]_25 chrIII:12399837-12399917 1.6e-05 58_[+2]_14 chrV:14876375-14876455 1.6e-05 1_[+2]_71 chrII:14528442-14528522 3.2e-05 14_[+2]_58 chrIII:5555078-5555158 3.2e-05 9_[+2]_63 chrII:8137464-8137544 3.2e-05 11_[+2]_61 chrX:5407374-5407454 3.2e-05 20_[+2]_52 chrV:18707049-18707129 3.2e-05 2_[+2]_70 chrIII:1824649-1824729 4.8e-05 63_[+2]_9 chrIV:11310785-11310865 4.8e-05 64_[+2]_8 chrIV:16399109-16399189 4.8e-05 16_[+2]_56 chrIII:5211186-5211266 6.3e-05 22_[+2]_50 chrII:6741573-6741653 6.3e-05 31_[+2]_41 chrII:5399344-5399424 6.3e-05 37_[+2]_35 chrII:4238070-4238150 6.3e-05 21_[+2]_51 chrIV:5371089-5371169 6.3e-05 3_[+2]_69 chrIII:3499993-3500073 6.3e-05 66_[+2]_6 chrIII:1604673-1604753 8e-05 16_[+2]_56 chrII:1714897-1714977 8e-05 37_[+2]_35 chrIII:10856983-10857063 8e-05 61_[+2]_11 chrI:6051120-6051200 8e-05 21_[+2]_51 chrV:18712249-18712329 8e-05 49_[+2]_23 chrII:12042320-12042400 9.6e-05 44_[+2]_28 chrIII:3175112-3175192 9.6e-05 3_[+2]_69 chrIII:3476320-3476400 9.6e-05 67_[+2]_5 chrIV:9773725-9773805 9.6e-05 63_[+2]_9 chrI:1958505-1958585 0.00011 21_[+2]_51 chrII:11959419-11959499 0.00013 68_[+2]_4 chrX:17611200-17611280 0.00013 10_[+2]_62 chrX:3914362-3914442 0.00013 22_[+2]_50 chrV:16622036-16622116 0.00014 10_[+2]_62 chrX:8646511-8646591 0.00016 60_[+2]_12 chrI:4132294-4132374 0.00016 63_[+2]_9 chrI:5176381-5176461 0.00019 56_[+2]_16 chrIII:4508477-4508557 0.00019 30_[+2]_42 chrIV:16382357-16382437 0.00019 58_[+2]_14 chrI:3873928-3874008 0.00022 47_[+2]_25 chrII:5577187-5577267 0.00022 1_[+2]_71 chrV:20832729-20832809 0.00027 66_[+2]_6 chrIII:6805632-6805712 0.00027 65_[+2]_7 chrIV:13386217-13386297 0.00029 51_[+2]_21 chrIV:17108353-17108433 0.0003 24_[+2]_48 chrI:13331080-13331160 0.00038 50_[+2]_22 chrV:18723902-18723982 0.00038 43_[+2]_29 chrV:15551829-15551909 0.00038 68_[+2]_4 chrX:7794458-7794538 0.00043 41_[+2]_31 chrV:18507080-18507160 0.00043 40_[+2]_32 chrIV:17099286-17099366 0.00043 12_[+2]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGMAAAAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGMAAAAA width=8 seqs=54 chrV:13962158-13962238 ( 60) TGCAAAAA 1 chrII:3439356-3439436 ( 26) TGCAAAAA 1 chrI:1175816-1175896 ( 52) TGCAAAAA 1 chrX:12458151-12458231 ( 12) TGCAAAAA 1 chrX:10821252-10821332 ( 55) TGCAAAAA 1 chrII:3521450-3521530 ( 24) TGCAAAAA 1 chrI:4633655-4633735 ( 48) TGCAAAAA 1 chrIII:12399837-12399917 ( 59) TGCAAAAA 1 chrV:14876375-14876455 ( 2) TGCAAAAA 1 chrII:14528442-14528522 ( 15) TGAAAAAA 1 chrIII:5555078-5555158 ( 10) TGAAAAAA 1 chrII:8137464-8137544 ( 12) TGAAAAAA 1 chrX:5407374-5407454 ( 21) TGAAAAAA 1 chrV:18707049-18707129 ( 3) TGAAAAAA 1 chrIII:1824649-1824729 ( 64) TGCAAAAT 1 chrIV:11310785-11310865 ( 65) TGCAAAAT 1 chrIV:16399109-16399189 ( 17) TGCAAAAT 1 chrIII:5211186-5211266 ( 23) TGCGAAAA 1 chrII:6741573-6741653 ( 32) TGCGAAAA 1 chrII:5399344-5399424 ( 38) TGCGAAAA 1 chrII:4238070-4238150 ( 22) TGCGAAAA 1 chrIV:5371089-5371169 ( 4) TGCGAAAA 1 chrIII:3499993-3500073 ( 67) TGCGAAAA 1 chrIII:1604673-1604753 ( 17) TTCAAAAA 1 chrII:1714897-1714977 ( 38) TTCAAAAA 1 chrIII:10856983-10857063 ( 62) TTCAAAAA 1 chrI:6051120-6051200 ( 22) TTCAAAAA 1 chrV:18712249-18712329 ( 50) TTCAAAAA 1 chrII:12042320-12042400 ( 45) TGAAAAAT 1 chrIII:3175112-3175192 ( 4) TGAAAAAT 1 chrIII:3476320-3476400 ( 68) TGAAAAAT 1 chrIV:9773725-9773805 ( 64) TGAAAAAT 1 chrI:1958505-1958585 ( 22) TGAGAAAA 1 chrII:11959419-11959499 ( 69) TTAAAAAA 1 chrX:17611200-17611280 ( 11) TTAAAAAA 1 chrX:3914362-3914442 ( 23) TTAAAAAA 1 chrV:16622036-16622116 ( 11) CGCAAAAA 1 chrX:8646511-8646591 ( 61) TGGAAAAA 1 chrI:4132294-4132374 ( 64) TGGAAAAA 1 chrI:5176381-5176461 ( 57) TGCGAAAT 1 chrIII:4508477-4508557 ( 31) CGAAAAAA 1 chrIV:16382357-16382437 ( 59) CGAAAAAA 1 chrI:3873928-3874008 ( 48) TGCAAAAC 1 chrII:5577187-5577267 ( 2) TGCAAAAC 1 chrV:20832729-20832809 ( 67) TACAAAAA 1 chrIII:6805632-6805712 ( 66) AGCAAAAA 1 chrIV:13386217-13386297 ( 52) TGCAAGAA 1 chrIV:17108353-17108433 ( 25) TGAGAAAT 1 chrI:13331080-13331160 ( 51) AGAAAAAA 1 chrV:18723902-18723982 ( 44) TAAAAAAA 1 chrV:15551829-15551909 ( 69) TTAGAAAA 1 chrX:7794458-7794538 ( 42) TGAAAGAA 1 chrV:18507080-18507160 ( 41) CGCAAAAT 1 chrIV:17099286-17099366 ( 13) GGCAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGMAAAAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.96686 E= 1.5e-010 -276 -174 -371 176 -276 -1240 171 -62 56 126 -271 -1240 169 -1240 -39 -1240 199 -1240 -1240 -1240 193 -1240 -271 -1240 199 -1240 -1240 -1240 163 -274 -1240 -47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGMAAAAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 1.5e-010 0.037037 0.074074 0.018519 0.870370 0.037037 0.000000 0.796296 0.166667 0.370370 0.592593 0.037037 0.000000 0.814815 0.000000 0.185185 0.000000 1.000000 0.000000 0.000000 0.000000 0.962963 0.000000 0.037037 0.000000 1.000000 0.000000 0.000000 0.000000 0.777778 0.037037 0.000000 0.185185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGMAAAAA MEME-2 regular expression -------------------------------------------------------------------------------- TG[CA]AAAAA -------------------------------------------------------------------------------- Time 12.48 secs. ******************************************************************************** ******************************************************************************** MOTIF AGTGGTTA MEME-3 width = 8 sites = 19 llr = 198 E-value = 1.2e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-3 Description -------------------------------------------------------------------------------- Simplified A a::::::a pos.-specific C :::::1:: probability G :a:a9::: matrix T ::a:19a: bits 2.0 **** ** 1.8 **** ** 1.6 ***** ** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (15.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGTGGTTA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:6158744-6158824 47 1.55e-05 GTCATGTCCG AGTGGTTA AGGAGATTGA chrX:5707996-5708076 45 1.55e-05 CAGGTGGCCG AGTGGTTA AGGCGATGGA chrIV:620478-620558 17 1.55e-05 CCTCTGGTGT AGTGGTTA TCACGTCTGC chrX:4444232-4444312 43 1.55e-05 CATGTGGTCT AGTGGTTA GGATTCGTGG chrI:9605735-9605815 34 1.55e-05 GCGATGTCCG AGTGGTTA AGGAGTTGGA chrX:1858787-1858867 45 1.55e-05 CATGTGGTCT AGTGGTTA GGATTCGTGG chrI:2935710-2935790 23 1.55e-05 TGTGTGGCCG AGTGGTTA ACACGCTCAC chrV:15553992-15554072 51 1.55e-05 TGCTTAGTAT AGTGGTTA GTACTCCACG chrIV:16400877-16400957 32 1.55e-05 TGCGTAGTAT AGTGGTTA GTACTCCACG chrII:5293444-5293524 21 1.55e-05 GTTGTGGTCT AGTGGTTA GGATTTATGG chrX:8971603-8971683 10 1.55e-05 TCATGTCCG AGTGGTTA AGGAGATTGA chrIV:842811-842891 11 1.55e-05 CATGTGGTCT AGTGGTTA GGATTCGTGG chrII:6898200-6898280 7 1.55e-05 TGGTCT AGTGGTTA GGATTCGTGG chrX:12843674-12843754 27 1.55e-05 CTCGTGGTGT AGTGGTTA TCACATCTGT chrII:3267951-3268031 51 1.55e-05 GTCATGTCCG AGTGGTTA AGGAGATTGA chrI:4175908-4175988 27 3.04e-05 GTAGTGGTCT AGTGGCTA GCAGGCACAC chrI:11609192-11609272 54 3.04e-05 ACCGTGGCCT AGTGGCTA GTAACACAGG chrX:6903159-6903239 51 4.68e-05 ATTCGAGAGT AGTGTTTA ACAATCAAGT chrV:18720217-18720297 11 4.68e-05 TAAACTTCAG AGTGTTTA ATTCAGTGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:6158744-6158824 1.5e-05 46_[+3]_26 chrX:5707996-5708076 1.5e-05 44_[+3]_28 chrIV:620478-620558 1.5e-05 16_[+3]_56 chrX:4444232-4444312 1.5e-05 42_[+3]_30 chrI:9605735-9605815 1.5e-05 33_[+3]_39 chrX:1858787-1858867 1.5e-05 44_[+3]_28 chrI:2935710-2935790 1.5e-05 22_[+3]_50 chrV:15553992-15554072 1.5e-05 50_[+3]_22 chrIV:16400877-16400957 1.5e-05 31_[+3]_41 chrII:5293444-5293524 1.5e-05 20_[+3]_52 chrX:8971603-8971683 1.5e-05 9_[+3]_63 chrIV:842811-842891 1.5e-05 10_[+3]_62 chrII:6898200-6898280 1.5e-05 6_[+3]_66 chrX:12843674-12843754 1.5e-05 26_[+3]_46 chrII:3267951-3268031 1.5e-05 50_[+3]_22 chrI:4175908-4175988 3e-05 26_[+3]_46 chrI:11609192-11609272 3e-05 53_[+3]_19 chrX:6903159-6903239 4.7e-05 50_[+3]_22 chrV:18720217-18720297 4.7e-05 10_[+3]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGTGGTTA width=8 seqs=19 chrIII:6158744-6158824 ( 47) AGTGGTTA 1 chrX:5707996-5708076 ( 45) AGTGGTTA 1 chrIV:620478-620558 ( 17) AGTGGTTA 1 chrX:4444232-4444312 ( 43) AGTGGTTA 1 chrI:9605735-9605815 ( 34) AGTGGTTA 1 chrX:1858787-1858867 ( 45) AGTGGTTA 1 chrI:2935710-2935790 ( 23) AGTGGTTA 1 chrV:15553992-15554072 ( 51) AGTGGTTA 1 chrIV:16400877-16400957 ( 32) AGTGGTTA 1 chrII:5293444-5293524 ( 21) AGTGGTTA 1 chrX:8971603-8971683 ( 10) AGTGGTTA 1 chrIV:842811-842891 ( 11) AGTGGTTA 1 chrII:6898200-6898280 ( 7) AGTGGTTA 1 chrX:12843674-12843754 ( 27) AGTGGTTA 1 chrII:3267951-3268031 ( 51) AGTGGTTA 1 chrI:4175908-4175988 ( 27) AGTGGCTA 1 chrI:11609192-11609272 ( 54) AGTGGCTA 1 chrX:6903159-6903239 ( 51) AGTGTTTA 1 chrV:18720217-18720297 ( 11) AGTGTTTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1012 E= 1.2e-008 199 -1089 -1089 -1089 -1089 -1089 204 -1089 -1089 -1089 -1089 196 -1089 -1089 204 -1089 -1089 -1089 188 -129 -1089 -123 -1089 180 -1089 -1089 -1089 196 199 -1089 -1089 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 1.2e-008 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.894737 0.105263 0.000000 0.105263 0.000000 0.894737 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-3 regular expression -------------------------------------------------------------------------------- AGTGGTTA -------------------------------------------------------------------------------- Time 15.94 secs. ******************************************************************************** ******************************************************************************** MOTIF CGYGCGGC MEME-4 width = 8 sites = 73 llr = 523 E-value = 5.5e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGYGCGGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :2:::::: pos.-specific C 8:5:71:9 probability G :81918a1 matrix T 2:4121:: bits 2.0 1.8 * 1.6 * * 1.4 * ** Relative 1.2 ** * *** Entropy 1.0 ** ***** (10.3 bits) 0.8 ** ***** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGCGCGGC consensus TAT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGYGCGGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:13962158-13962238 49 1.32e-05 GCATAAACTG CGCGCGGC AACTGCAAAA chrIII:4171149-4171229 16 1.32e-05 ATGTCATCTG CGCGCGGC ATATCTGCAA chrIII:4568713-4568793 10 1.32e-05 TGAAAATGT CGCGCGGC GGAATTGCGA chrI:1175816-1175896 39 2.69e-05 ACATAAACTC CGTGCGGC ACACTTGCAA chrIV:9316176-9316256 45 2.69e-05 TGAATAAAAC CGTGCGGC GGAATTGCGA chrIII:1824649-1824729 51 2.69e-05 AACTAAACCC CGTGCGGC GCTCTTGCAA chrI:3873928-3874008 13 2.69e-05 CCATGACTTT Cgtgcggc gagattgcga chrII:4238070-4238150 32 2.69e-05 TGCGAAAATG CGTGCGGC GCGTTGCAAC chrIV:1981110-1981190 35 2.69e-05 GGCGGGCTTG CGTGCGGC TCCCCGCCCA chrI:4132294-4132374 41 2.69e-05 CCACTTTAAC CGTGCGGC GTGCAGCGTT chrIV:11310785-11310865 9 4.05e-05 AGGAAAAG TGCGCGGC GGGCTTGCAG chrI:14606041-14606121 17 4.05e-05 GCTGGAAAAG TGCGCGGC AGACTTGCAC chrI:1958505-1958585 63 8.20e-05 TGCGCAACGG TGTGCGGC GGCCTTGCAG chrX:10132656-10132736 25 8.20e-05 GCTGACTGGC CGCGTGGC GCAATGGATA chrX:13121245-13121325 47 8.20e-05 ccgggccgcc cgcgtggc aggcgagcat chrV:11113333-11113413 27 8.20e-05 CCAAACgcaa tgtgcggc acgcgttttc chrIV:13386217-13386297 17 8.20e-05 CTGCAACAAG TGTGCGGC GTTGTTGCAA chrIII:8768038-8768118 44 8.20e-05 CTGAGTAAAC TGTGCGGC GTGTTTGCGG chrX:4444232-4444312 69 8.20e-05 GGTTTTCACC CACGCGGC CCGG chrIV:3524814-3524894 8 8.20e-05 GTCTGGC CGCGTGGC GCAATGGATA chrII:9566195-9566275 49 8.20e-05 TTTTCATGGC CGCGTGGC CTAATGGATA chrX:1858787-1858867 71 8.20e-05 GGTTTTCACC CACGCGGC CC chrX:11252628-11252708 26 8.20e-05 TCCATTGCGC CACGCGGC CACACAGACT chrII:5399344-5399424 25 8.20e-05 AGCTGCACAC TGTGCGGC ACAATTGCGA chrIII:3175112-3175192 48 8.20e-05 CTCTTAACTC TGTGCGGC ACCATTGCGG chrX:8646511-8646591 8 8.20e-05 TTTCACC CACGCGGC CCGGGTTCGA chrIV:842811-842891 37 8.20e-05 GGTTTTCACC CACGCGGC CCGGGTTCGA chrII:6898200-6898280 33 8.20e-05 GGTTTTCACC CACGCGGC CCGGGTTCGA chrX:16928300-16928380 2 8.20e-05 c cgcgtggc aggcgagcat chrV:15505224-15505304 15 8.20e-05 ccgggccgcc cgcgtggc aggcgagcat chrX:12337990-12338070 72 8.20e-05 TCCATTAGGC CACGCGGC C chrI:5176381-5176461 67 1.10e-04 TGCGAAATAC CATGCGGC GGTATT chrIV:143979-144059 6 1.10e-04 ATGGC CGTGTGGC CTAATGGATA chrX:14115647-14115727 47 1.10e-04 CTTTCGTGGC CGTGTGGC CTAATGGATA chrI:13310420-13310500 41 1.36e-04 CAGCAGGGAG CGGGCGGC CGCCAGTGTG chrI:11579734-11579814 40 1.36e-04 CTGAGCTAAC CGGGCGGC GATCACAGTT chrIII:11236968-11237048 19 1.63e-04 CCCACATTTC CGCGCCGC ACCCGAATCA chrI:12004909-12004989 55 1.63e-04 TGCAGACTGG CGCGCCGC AGCTTGCAAA chrX:12367694-12367774 31 1.77e-04 GACGAGAGAC CGTGCCGC ATCGGAATAG chrIV:5371089-5371169 14 1.77e-04 TGCGAAAACG CGTGCCGC GGAAAGGCAA chrIII:5555078-5555158 38 1.90e-04 CCAAACTGTG CGCGGGGC ACTTGCGCAA chrV:16553159-16553239 10 2.03e-04 TCCCCTTTT CGTGGGGC CTCGTCAAAT chrIII:3499993-3500073 18 2.03e-04 TTCCCGCTTT CGTGGGGC CTCAAACCCG chrIII:4905627-4905707 32 2.46e-04 TCGAGTAAAG TGCGTGGC CTAGAAATTC chrIII:13225184-13225264 25 2.46e-04 AACAGCCGAA CGCGCTGC CTATTGCGCC chrIII:9104219-9104299 35 2.46e-04 AACAGCCGAA CGCGCTGC CTATTGCGCC chrI:2935710-2935790 13 3.04e-04 TGAAGTGAGT TGTGTGGC CGAGTGGTTA chrX:3969510-3969590 41 3.18e-04 ACATTGGAAA CATGTGGC CGAATGGTCT chrX:6903159-6903239 20 3.32e-04 CGCCTTAGAC CGCTCGGC CATCTCTCCA chrV:19722988-19723068 67 3.47e-04 ATAGGCAGCG CGTTCGGC TGTTAA chrI:11323370-11323450 10 3.87e-04 TGCAAATAT CGCGCGCC CGCATTGCAA chrI:6164330-6164410 46 3.87e-04 TCGCATTTGC CGCGCGCC AAGGACATGC chrV:11239331-11239411 38 3.87e-04 ACGCAACCAG TGCGCGGG TTTTTTGCAA chrIV:1388216-1388296 27 4.82e-04 GAACCCGGGC CGCGTGGG TGAAAACCAC chrI:5316192-5316272 52 4.82e-04 tatgtatgta tgtGCGGG ATGATGGACG chrI:4633655-4633735 13 4.82e-04 GCATCAATTG CGTGCGCC GTTTTTGCAT chrV:4731513-4731593 65 4.82e-04 TTAGCCATTC TGTGCGGG GACATTGC chrX:16602642-16602722 24 4.82e-04 ATTAACCCCC CGGGTGGC CGAATCAAGA chrIV:9477729-9477809 34 5.52e-04 CCACCTGCGC CATGCGGG CATAACCAAT chrIV:16398320-16398400 59 5.52e-04 CCCATCACGT CATGCGGG GGTATAGCTC chrV:14524395-14524475 19 5.52e-04 TGTGTGCAAA CACGCCGC ACACACTTAC chrIV:16399109-16399189 70 5.52e-04 CTAGCTGCCT CATGCGGG GGT chrIII:3664369-3664449 48 5.52e-04 TCGCTTGCAA CACGCCGC GCGCATTTCG chrII:3439356-3439436 45 5.95e-04 ATCAGCCCAA TGCGGGGC TCGAACCCGC chrII:3567721-3567801 50 5.95e-04 GTAAGCCCAA TGCGGGGC TCGAACCCGC chrII:8547092-8547172 46 7.22e-04 TCCAGCCAGC TGTGCTGC TGCTTTTGTG chrX:12693205-12693285 7 7.22e-04 AATAAG TGTGCTGC CTTAAAGCTT chrI:12225419-12225499 70 7.22e-04 TCCACTGCGC CACGCTGC TGC chrX:8650687-8650767 28 7.22e-04 AGACTGATCT CGGGCGGG CTCGAACCAC chrII:4942523-4942603 68 7.93e-04 GCATCATTTG CGGGCCGC CAGTA chrX:6867851-6867931 58 8.21e-04 GTTCGATTAG CGTGCCGG CACCCACTGG chrV:12596980-12597060 55 8.65e-04 AGGACACAAC CACTCGGC CATCGAATCG chrIV:7487910-7487990 30 8.65e-04 CTTACGATGG CGCTTGGC ACCTCCTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGYGCGGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:13962158-13962238 1.3e-05 48_[+4]_24 chrIII:4171149-4171229 1.3e-05 15_[+4]_57 chrIII:4568713-4568793 1.3e-05 9_[+4]_63 chrI:1175816-1175896 2.7e-05 38_[+4]_34 chrIV:9316176-9316256 2.7e-05 44_[+4]_28 chrIII:1824649-1824729 2.7e-05 50_[+4]_22 chrI:3873928-3874008 2.7e-05 12_[+4]_60 chrII:4238070-4238150 2.7e-05 31_[+4]_41 chrIV:1981110-1981190 2.7e-05 34_[+4]_38 chrI:4132294-4132374 2.7e-05 40_[+4]_32 chrIV:11310785-11310865 4.1e-05 8_[+4]_64 chrI:14606041-14606121 4.1e-05 16_[+4]_56 chrI:1958505-1958585 8.2e-05 62_[+4]_10 chrX:10132656-10132736 8.2e-05 24_[+4]_48 chrX:13121245-13121325 8.2e-05 46_[+4]_26 chrV:11113333-11113413 8.2e-05 26_[+4]_46 chrIV:13386217-13386297 8.2e-05 16_[+4]_56 chrIII:8768038-8768118 8.2e-05 43_[+4]_29 chrX:4444232-4444312 8.2e-05 68_[+4]_4 chrIV:3524814-3524894 8.2e-05 7_[+4]_65 chrII:9566195-9566275 8.2e-05 48_[+4]_24 chrX:1858787-1858867 8.2e-05 70_[+4]_2 chrX:11252628-11252708 8.2e-05 25_[+4]_47 chrII:5399344-5399424 8.2e-05 24_[+4]_48 chrIII:3175112-3175192 8.2e-05 47_[+4]_25 chrX:8646511-8646591 8.2e-05 7_[+4]_65 chrIV:842811-842891 8.2e-05 36_[+4]_36 chrII:6898200-6898280 8.2e-05 32_[+4]_40 chrX:16928300-16928380 8.2e-05 1_[+4]_71 chrV:15505224-15505304 8.2e-05 14_[+4]_58 chrX:12337990-12338070 8.2e-05 71_[+4]_1 chrI:5176381-5176461 0.00011 66_[+4]_6 chrIV:143979-144059 0.00011 5_[+4]_67 chrX:14115647-14115727 0.00011 46_[+4]_26 chrI:13310420-13310500 0.00014 40_[+4]_32 chrI:11579734-11579814 0.00014 39_[+4]_33 chrIII:11236968-11237048 0.00016 18_[+4]_54 chrI:12004909-12004989 0.00016 54_[+4]_18 chrX:12367694-12367774 0.00018 30_[+4]_42 chrIV:5371089-5371169 0.00018 13_[+4]_59 chrIII:5555078-5555158 0.00019 37_[+4]_35 chrV:16553159-16553239 0.0002 9_[+4]_63 chrIII:3499993-3500073 0.0002 17_[+4]_55 chrIII:4905627-4905707 0.00025 31_[+4]_41 chrIII:13225184-13225264 0.00025 24_[+4]_48 chrIII:9104219-9104299 0.00025 34_[+4]_38 chrI:2935710-2935790 0.0003 12_[+4]_60 chrX:3969510-3969590 0.00032 40_[+4]_32 chrX:6903159-6903239 0.00033 19_[+4]_53 chrV:19722988-19723068 0.00035 66_[+4]_6 chrI:11323370-11323450 0.00039 9_[+4]_63 chrI:6164330-6164410 0.00039 45_[+4]_27 chrV:11239331-11239411 0.00039 37_[+4]_35 chrIV:1388216-1388296 0.00048 26_[+4]_46 chrI:5316192-5316272 0.00048 51_[+4]_21 chrI:4633655-4633735 0.00048 12_[+4]_60 chrV:4731513-4731593 0.00048 64_[+4]_8 chrX:16602642-16602722 0.00048 23_[+4]_49 chrIV:9477729-9477809 0.00055 33_[+4]_39 chrIV:16398320-16398400 0.00055 58_[+4]_14 chrV:14524395-14524475 0.00055 18_[+4]_54 chrIV:16399109-16399189 0.00055 69_[+4]_3 chrIII:3664369-3664449 0.00055 47_[+4]_25 chrII:3439356-3439436 0.00059 44_[+4]_28 chrII:3567721-3567801 0.00059 49_[+4]_23 chrII:8547092-8547172 0.00072 45_[+4]_27 chrX:12693205-12693285 0.00072 6_[+4]_66 chrI:12225419-12225499 0.00072 69_[+4]_3 chrX:8650687-8650767 0.00072 27_[+4]_45 chrII:4942523-4942603 0.00079 67_[+4]_5 chrX:6867851-6867931 0.00082 57_[+4]_15 chrV:12596980-12597060 0.00087 54_[+4]_18 chrIV:7487910-7487990 0.00087 29_[+4]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGYGCGGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGYGCGGC width=8 seqs=73 chrV:13962158-13962238 ( 49) CGCGCGGC 1 chrIII:4171149-4171229 ( 16) CGCGCGGC 1 chrIII:4568713-4568793 ( 10) CGCGCGGC 1 chrI:1175816-1175896 ( 39) CGTGCGGC 1 chrIV:9316176-9316256 ( 45) CGTGCGGC 1 chrIII:1824649-1824729 ( 51) CGTGCGGC 1 chrI:3873928-3874008 ( 13) CGTGCGGC 1 chrII:4238070-4238150 ( 32) CGTGCGGC 1 chrIV:1981110-1981190 ( 35) CGTGCGGC 1 chrI:4132294-4132374 ( 41) CGTGCGGC 1 chrIV:11310785-11310865 ( 9) TGCGCGGC 1 chrI:14606041-14606121 ( 17) TGCGCGGC 1 chrI:1958505-1958585 ( 63) TGTGCGGC 1 chrX:10132656-10132736 ( 25) CGCGTGGC 1 chrX:13121245-13121325 ( 47) CGCGTGGC 1 chrV:11113333-11113413 ( 27) TGTGCGGC 1 chrIV:13386217-13386297 ( 17) TGTGCGGC 1 chrIII:8768038-8768118 ( 44) TGTGCGGC 1 chrX:4444232-4444312 ( 69) CACGCGGC 1 chrIV:3524814-3524894 ( 8) CGCGTGGC 1 chrII:9566195-9566275 ( 49) CGCGTGGC 1 chrX:1858787-1858867 ( 71) CACGCGGC 1 chrX:11252628-11252708 ( 26) CACGCGGC 1 chrII:5399344-5399424 ( 25) TGTGCGGC 1 chrIII:3175112-3175192 ( 48) TGTGCGGC 1 chrX:8646511-8646591 ( 8) CACGCGGC 1 chrIV:842811-842891 ( 37) CACGCGGC 1 chrII:6898200-6898280 ( 33) CACGCGGC 1 chrX:16928300-16928380 ( 2) CGCGTGGC 1 chrV:15505224-15505304 ( 15) CGCGTGGC 1 chrX:12337990-12338070 ( 72) CACGCGGC 1 chrI:5176381-5176461 ( 67) CATGCGGC 1 chrIV:143979-144059 ( 6) CGTGTGGC 1 chrX:14115647-14115727 ( 47) CGTGTGGC 1 chrI:13310420-13310500 ( 41) CGGGCGGC 1 chrI:11579734-11579814 ( 40) CGGGCGGC 1 chrIII:11236968-11237048 ( 19) CGCGCCGC 1 chrI:12004909-12004989 ( 55) CGCGCCGC 1 chrX:12367694-12367774 ( 31) CGTGCCGC 1 chrIV:5371089-5371169 ( 14) CGTGCCGC 1 chrIII:5555078-5555158 ( 38) CGCGGGGC 1 chrV:16553159-16553239 ( 10) CGTGGGGC 1 chrIII:3499993-3500073 ( 18) CGTGGGGC 1 chrIII:4905627-4905707 ( 32) TGCGTGGC 1 chrIII:13225184-13225264 ( 25) CGCGCTGC 1 chrIII:9104219-9104299 ( 35) CGCGCTGC 1 chrI:2935710-2935790 ( 13) TGTGTGGC 1 chrX:3969510-3969590 ( 41) CATGTGGC 1 chrX:6903159-6903239 ( 20) CGCTCGGC 1 chrV:19722988-19723068 ( 67) CGTTCGGC 1 chrI:11323370-11323450 ( 10) CGCGCGCC 1 chrI:6164330-6164410 ( 46) CGCGCGCC 1 chrV:11239331-11239411 ( 38) TGCGCGGG 1 chrIV:1388216-1388296 ( 27) CGCGTGGG 1 chrI:5316192-5316272 ( 52) TGTGCGGG 1 chrI:4633655-4633735 ( 13) CGTGCGCC 1 chrV:4731513-4731593 ( 65) TGTGCGGG 1 chrX:16602642-16602722 ( 24) CGGGTGGC 1 chrIV:9477729-9477809 ( 34) CATGCGGG 1 chrIV:16398320-16398400 ( 59) CATGCGGG 1 chrV:14524395-14524475 ( 19) CACGCCGC 1 chrIV:16399109-16399189 ( 70) CATGCGGG 1 chrIII:3664369-3664449 ( 48) CACGCCGC 1 chrII:3439356-3439436 ( 45) TGCGGGGC 1 chrII:3567721-3567801 ( 50) TGCGGGGC 1 chrII:8547092-8547172 ( 46) TGTGCTGC 1 chrX:12693205-12693285 ( 7) TGTGCTGC 1 chrI:12225419-12225499 ( 70) CACGCTGC 1 chrX:8650687-8650767 ( 28) CGGGCGGG 1 chrII:4942523-4942603 ( 68) CGGGCCGC 1 chrX:6867851-6867931 ( 58) CGTGCCGG 1 chrV:12596980-12597060 ( 55) CACTCGGC 1 chrIV:7487910-7487990 ( 30) CGCTTGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGYGCGGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.11038 E= 5.5e-007 -1283 163 -1283 -14 -20 -1283 168 -1283 -1283 99 -183 77 -1283 -1283 196 -223 -1283 158 -183 -42 -1283 -118 176 -191 -1283 -259 198 -1283 -1283 182 -98 -1283 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGYGCGGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 73 E= 5.5e-007 0.000000 0.767123 0.000000 0.232877 0.219178 0.000000 0.780822 0.000000 0.000000 0.493151 0.068493 0.438356 0.000000 0.000000 0.945205 0.054795 0.000000 0.739726 0.068493 0.191781 0.000000 0.109589 0.821918 0.068493 0.000000 0.041096 0.958904 0.000000 0.000000 0.876712 0.123288 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGYGCGGC MEME-4 regular expression -------------------------------------------------------------------------------- [CT][GA][CT]GCGGC -------------------------------------------------------------------------------- Time 19.42 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTCTRCC MEME-5 width = 8 sites = 29 llr = 261 E-value = 2.4e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTCTRCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::41: pos.-specific C :a:a119a probability G 9::::5:: matrix T 1:a:9::: bits 2.0 *** * 1.8 *** * 1.6 *** * 1.4 ***** ** Relative 1.2 ***** ** Entropy 1.0 ***** ** (13.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCTCTGCC consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTRCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:20694098-20694178 71 1.48e-05 GCAGTCGAAT GCTCTGCC AC chrIII:10624764-10624844 26 1.48e-05 CTAGACAGAC GCTCTGCC ACTGAGCCAA chrX:11935068-11935148 60 1.48e-05 CGAGACAGAC GCTCTGCC ACTGAGCTAT chrX:8971603-8971683 43 1.48e-05 AATCAATTGG GCTCTGCC CGCGTAGGTT chrIII:7030542-7030622 63 1.48e-05 CTAGACAGAC GCTCTGCC ACTGAGCCAA chrV:14855809-14855889 26 1.48e-05 GCAGTCGAAT GCTCTGCC ACTGAGCTAT chrX:8818097-8818177 51 1.48e-05 GCAGTCGAAT GCTCTGCC ACTGAGCTAT chrI:13297707-13297787 14 3.01e-05 AGAGTCTGGT GCTCTACC GACTGAGCTA chrX:9637884-9637964 16 3.01e-05 CTAAGGGAGC GCTCTACC ACTGAGCTAT chrX:12458151-12458231 73 3.01e-05 CTAAGGGAGC GCTCTACC chrIII:4428951-4429031 50 3.01e-05 CTAAGGGAGC GCTCTACC ACTGAGCTAT chrI:11579734-11579814 20 3.01e-05 AGAGTCTGGT GCTCTACC GACTGAGCTA chrX:12890273-12890353 60 3.01e-05 CGAAGCGAGC GCTCTACC CCTGAGCTAT chrIV:14013782-14013862 71 3.01e-05 CAAAGCGAGC GCTCTACC CC chrV:16622036-16622116 71 3.01e-05 AAAGTCTCAC GCTCTACC AA chrIII:4171149-4171229 61 5.93e-05 TGCAAAGAAC GCTCCGCC CACAAACATT chrII:4238070-4238150 53 5.93e-05 TTGCAACTTA GCTCCGCC CACCCTTTGA chrI:14606041-14606121 41 5.93e-05 GCACCCCCTG GCTCCGCC CATTTTTCTG chrIII:182416-182496 12 5.93e-05 CAGCGTAGAT GCTCTGAC CAAGTTCCAT chrI:13421204-13421284 28 5.93e-05 TTACAGCTAA GCTCCGCC TCTTTTCTCC chrII:5057441-5057521 54 1.05e-04 TTAGACCCAC GCTCTAAC CGACTGAGCT chrX:5319364-5319444 69 1.05e-04 TCAGTCGTAC GCTCTCCC AACT chrV:14876375-14876455 62 1.05e-04 TCAGTCGTAC GCTCTCCC AACTGAGCTA chrIII:1218358-1218438 66 1.05e-04 TTAGACCCAC GCTCTAAC CGACTGA chrX:13415148-13415228 20 1.05e-04 TTAGACCCAC GCTCTAAC CGACTGAGCT chrIII:5555078-5555158 18 1.20e-04 ACTGAAAAAA TCTCTGCC TGCCAAACTG chrIV:14872548-14872628 2 1.20e-04 C TCTCTGCC TCTCCTCGAA chrX:9225520-9225600 64 1.36e-04 TCTTCCTTTC TCTCTACC ATACCCCAC chrIV:15289651-15289731 6 1.36e-04 CTTTC TCTCTACC CCTTTCGTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTRCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:20694098-20694178 1.5e-05 70_[+5]_2 chrIII:10624764-10624844 1.5e-05 25_[+5]_47 chrX:11935068-11935148 1.5e-05 59_[+5]_13 chrX:8971603-8971683 1.5e-05 42_[+5]_30 chrIII:7030542-7030622 1.5e-05 62_[+5]_10 chrV:14855809-14855889 1.5e-05 25_[+5]_47 chrX:8818097-8818177 1.5e-05 50_[+5]_22 chrI:13297707-13297787 3e-05 13_[+5]_59 chrX:9637884-9637964 3e-05 15_[+5]_57 chrX:12458151-12458231 3e-05 72_[+5] chrIII:4428951-4429031 3e-05 49_[+5]_23 chrI:11579734-11579814 3e-05 19_[+5]_53 chrX:12890273-12890353 3e-05 59_[+5]_13 chrIV:14013782-14013862 3e-05 70_[+5]_2 chrV:16622036-16622116 3e-05 70_[+5]_2 chrIII:4171149-4171229 5.9e-05 60_[+5]_12 chrII:4238070-4238150 5.9e-05 52_[+5]_20 chrI:14606041-14606121 5.9e-05 40_[+5]_32 chrIII:182416-182496 5.9e-05 11_[+5]_61 chrI:13421204-13421284 5.9e-05 27_[+5]_45 chrII:5057441-5057521 0.0001 53_[+5]_19 chrX:5319364-5319444 0.0001 68_[+5]_4 chrV:14876375-14876455 0.0001 61_[+5]_11 chrIII:1218358-1218438 0.0001 65_[+5]_7 chrX:13415148-13415228 0.0001 19_[+5]_53 chrIII:5555078-5555158 0.00012 17_[+5]_55 chrIV:14872548-14872628 0.00012 1_[+5]_71 chrX:9225520-9225600 0.00014 63_[+5]_9 chrIV:15289651-15289731 0.00014 5_[+5]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTRCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTCTRCC width=8 seqs=29 chrV:20694098-20694178 ( 71) GCTCTGCC 1 chrIII:10624764-10624844 ( 26) GCTCTGCC 1 chrX:11935068-11935148 ( 60) GCTCTGCC 1 chrX:8971603-8971683 ( 43) GCTCTGCC 1 chrIII:7030542-7030622 ( 63) GCTCTGCC 1 chrV:14855809-14855889 ( 26) GCTCTGCC 1 chrX:8818097-8818177 ( 51) GCTCTGCC 1 chrI:13297707-13297787 ( 14) GCTCTACC 1 chrX:9637884-9637964 ( 16) GCTCTACC 1 chrX:12458151-12458231 ( 73) GCTCTACC 1 chrIII:4428951-4429031 ( 50) GCTCTACC 1 chrI:11579734-11579814 ( 20) GCTCTACC 1 chrX:12890273-12890353 ( 60) GCTCTACC 1 chrIV:14013782-14013862 ( 71) GCTCTACC 1 chrV:16622036-16622116 ( 71) GCTCTACC 1 chrIII:4171149-4171229 ( 61) GCTCCGCC 1 chrII:4238070-4238150 ( 53) GCTCCGCC 1 chrI:14606041-14606121 ( 41) GCTCCGCC 1 chrIII:182416-182496 ( 12) GCTCTGAC 1 chrI:13421204-13421284 ( 28) GCTCCGCC 1 chrII:5057441-5057521 ( 54) GCTCTAAC 1 chrX:5319364-5319444 ( 69) GCTCTCCC 1 chrV:14876375-14876455 ( 62) GCTCTCCC 1 chrIII:1218358-1218438 ( 66) GCTCTAAC 1 chrX:13415148-13415228 ( 20) GCTCTAAC 1 chrIII:5555078-5555158 ( 18) TCTCTGCC 1 chrIV:14872548-14872628 ( 2) TCTCTGCC 1 chrX:9225520-9225600 ( 64) TCTCTACC 1 chrIV:15289651-15289731 ( 6) TCTCTACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTRCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.18043 E= 2.4e-006 -1150 -1150 183 -90 -1150 201 -1150 -1150 -1150 -1150 -1150 196 -1150 201 -1150 -1150 -1150 -85 -1150 175 83 -184 99 -1150 -87 180 -1150 -1150 -1150 201 -1150 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTRCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 2.4e-006 0.000000 0.000000 0.862069 0.137931 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.137931 0.000000 0.862069 0.448276 0.068966 0.482759 0.000000 0.137931 0.862069 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTRCC MEME-5 regular expression -------------------------------------------------------------------------------- GCTCT[GA]CC -------------------------------------------------------------------------------- Time 22.72 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:18720217-18720297 1.04e-02 10_[+3(4.68e-05)]_62 chrV:18709408-18709488 9.96e-01 80 chrIII:7554797-7554877 2.92e-01 80 chrII:2570543-2570623 2.31e-01 80 chrIII:3499993-3500073 4.17e-03 66_[+2(6.30e-05)]_6 chrV:18710249-18710329 1.89e-01 80 chrV:16622036-16622116 1.14e-04 37_[+1(1.50e-05)]_25_[+5(3.01e-05)]_\ 2 chrX:12337990-12338070 1.52e-02 71_[+4(8.20e-05)]_1 chrII:3267951-3268031 9.13e-03 50_[+3(1.55e-05)]_22 chrII:5667662-5667742 1.91e-01 80 chrIV:14013782-14013862 1.63e-03 37_[+1(1.50e-05)]_25_[+5(3.01e-05)]_\ 2 chrX:8156107-8156187 9.20e-01 80 chrV:14689534-14689614 7.92e-02 62_[+1(3.05e-05)]_10 chrI:12229393-12229473 1.05e-01 80 chrV:18712249-18712329 7.81e-02 49_[+2(7.96e-05)]_23 chrI:6136593-6136673 3.58e-02 57_[+1(7.56e-05)]_15 chrV:4181962-4182042 5.28e-01 80 chrI:9176279-9176359 1.30e-01 80 chrX:8818097-8818177 5.56e-03 50_[+5(1.48e-05)]_22 chrI:6051120-6051200 1.31e-03 21_[+2(7.96e-05)]_20_[+1(1.50e-05)]_\ 23 chrX:3994576-3994656 6.30e-01 80 chrV:18714058-18714138 3.57e-01 80 chrV:14855809-14855889 1.37e-03 25_[+5(1.48e-05)]_47 chrX:3914362-3914442 1.54e-01 80 chrIII:10856983-10857063 5.19e-02 61_[+2(7.96e-05)]_11 chrIV:16684362-16684442 3.28e-02 35_[+1(1.50e-05)]_37 chrX:16602642-16602722 1.61e-02 6_[+1(6.11e-05)]_66 chrI:4132294-4132374 3.15e-04 40_[+4(2.69e-05)]_32 chrIV:5371089-5371169 1.06e-02 3_[+2(6.30e-05)]_69 chrI:13421204-13421284 1.02e-01 27_[+5(5.93e-05)]_45 chrIV:17108353-17108433 2.06e-02 80 chrIV:15289651-15289731 3.54e-02 80 chrX:6286344-6286424 2.37e-02 29_[+1(9.14e-05)]_43 chrII:10545389-10545469 6.51e-02 80 chrX:3348031-3348111 4.86e-01 80 chrX:10395948-10396028 4.43e-01 80 chrIII:9104219-9104299 3.65e-03 2_[+1(6.11e-05)]_70 chrII:6565251-6565331 8.18e-02 80 chrV:5284432-5284512 9.93e-01 80 chrI:5611760-5611840 2.76e-01 80 chrIII:10432234-10432314 2.03e-01 80 chrIII:3664369-3664449 3.20e-01 80 chrII:14166515-14166595 5.77e-01 80 chrI:1575746-1575826 4.00e-02 27_[+1(7.56e-05)]_45 chrII:610-690 1.21e-01 80 chrV:18723669-18723749 5.09e-01 80 chrIII:8650353-8650433 4.66e-03 42_[+1(1.50e-05)]_30 chrIV:11928486-11928566 1.06e-01 6_[+1(1.50e-05)]_66 chrV:16553159-16553239 2.16e-01 80 chrI:8048628-8048708 6.46e-01 80 chrIII:6805632-6805712 5.79e-01 80 chrV:1228892-1228972 5.75e-01 80 chrIV:2802368-2802448 5.15e-01 80 chrIII:182416-182496 2.67e-02 11_[+5(5.93e-05)]_61 chrX:17611200-17611280 1.31e-01 80 chrX:4789131-4789211 8.18e-02 80 chrV:17324008-17324088 4.27e-01 80 chrV:19722988-19723068 3.57e-01 80 chrX:10203565-10203645 3.38e-01 80 chrI:11609192-11609272 1.12e-01 53_[+3(3.04e-05)]_19 chrIV:17099286-17099366 6.78e-02 80 chrIII:7551166-7551246 8.63e-01 80 chrI:11584771-11584851 6.25e-02 69_[+1(7.56e-05)]_3 chrX:13415148-13415228 8.20e-02 80 chrV:15505224-15505304 7.94e-02 14_[+4(8.20e-05)]_58 chrX:9373127-9373207 4.57e-03 80 chrI:12004909-12004989 1.47e-01 80 chrX:9296752-9296832 4.46e-01 80 chrX:3969510-3969590 8.40e-02 80 chrII:7001610-7001690 2.22e-02 69_[+1(9.14e-05)]_3 chrIV:16399109-16399189 3.03e-02 16_[+2(4.78e-05)]_56 chrIV:7487910-7487990 6.75e-01 80 chrX:8650687-8650767 5.89e-03 36_[+1(6.11e-05)]_36 chrV:18707049-18707129 3.00e-02 2_[+2(3.17e-05)]_70 chrX:16928300-16928380 2.36e-02 1_[+4(8.20e-05)]_71 chrV:7231001-7231081 6.04e-01 80 chrV:20832729-20832809 4.33e-01 80 chrX:12843674-12843754 2.23e-03 26_[+3(1.55e-05)]_33_[+1(7.56e-05)]_\ 5 chrX:14115647-14115727 6.46e-02 80 chrV:9583105-9583185 7.70e-01 80 chrX:4524660-4524740 7.11e-01 80 chrIII:11091865-11091945 5.68e-01 80 chrI:9249383-9249463 5.12e-01 80 chrI:2487845-2487925 1.11e-01 80 chrIII:8653042-8653122 1.15e-01 80 chrII:6898200-6898280 7.92e-05 6_[+3(1.55e-05)]_18_[+4(8.20e-05)]_\ 6_[+1(9.14e-05)]_26 chrII:11633103-11633183 7.76e-01 80 chrV:14524395-14524475 8.22e-02 80 chrX:14804849-14804929 2.79e-01 80 chrX:5407374-5407454 4.45e-03 20_[+2(3.17e-05)]_52 chrIII:4362548-4362628 5.96e-01 80 chrIV:9773725-9773805 1.21e-01 63_[+2(9.59e-05)]_9 chrIII:1218358-1218438 2.79e-03 80 chrV:18507080-18507160 1.46e-01 80 chrX:9225520-9225600 2.71e-01 80 chrII:8137464-8137544 6.98e-02 11_[+2(3.17e-05)]_61 chrX:12890273-12890353 9.62e-03 59_[+5(3.01e-05)]_13 chrIV:1687290-1687370 3.95e-01 80 chrIII:13293217-13293297 3.99e-01 80 chrI:12601765-12601845 3.63e-01 80 chrI:11579734-11579814 4.71e-04 19_[+5(3.01e-05)]_53 chrIII:7642124-7642204 2.66e-02 48_[+1(1.50e-05)]_24 chrIII:13225184-13225264 9.20e-02 80 chrX:16217957-16218037 8.43e-01 80 chrX:14504417-14504497 8.33e-01 80 chrX:2879843-2879923 9.40e-01 80 chrI:12225419-12225499 4.11e-03 80 chrIII:5954058-5954138 9.95e-01 80 chrIV:842811-842891 6.95e-05 10_[+3(1.55e-05)]_18_[+4(8.20e-05)]_\ 6_[+1(9.14e-05)]_22 chrIII:535401-535481 1.15e-01 45_[+1(3.05e-05)]_27 chrII:11959419-11959499 8.95e-03 9_[+1(4.58e-05)]_63 chrV:2674024-2674104 2.15e-01 38_[+1(9.14e-05)]_34 chrV:14876375-14876455 1.98e-04 1_[+2(1.57e-05)]_71 chrI:11198603-11198683 4.45e-01 80 chrX:16611509-16611589 4.77e-01 80 chrX:8646511-8646591 3.52e-04 7_[+4(8.20e-05)]_6_[+1(9.14e-05)]_\ 51 chrIV:2805703-2805783 1.95e-01 80 chrIII:7030542-7030622 1.37e-04 29_[+1(6.11e-05)]_25_[+5(1.48e-05)]_\ 10 chrV:8235369-8235449 1.11e-01 80 chrII:1714897-1714977 1.79e-02 37_[+2(7.96e-05)]_35 chrX:8971603-8971683 2.35e-06 9_[+3(1.55e-05)]_25_[+5(1.48e-05)]_\ 9_[+1(3.05e-05)]_13 chrII:5019277-5019357 8.50e-01 80 chrIV:1981110-1981190 5.83e-02 19_[+4(4.05e-05)]_7_[+4(2.69e-05)]_\ 38 chrX:12367694-12367774 1.87e-01 80 chrIII:3476320-3476400 1.51e-01 67_[+2(9.59e-05)]_5 chrII:7708751-7708831 6.96e-02 80 chrIII:4428951-4429031 1.73e-02 49_[+5(3.01e-05)]_23 chrII:7756946-7757026 4.38e-02 80 chrII:4942523-4942603 7.18e-02 80 chrX:8386173-8386253 3.25e-01 80 chrII:5293444-5293524 1.98e-04 20_[+3(1.55e-05)]_32_[+1(9.14e-05)]_\ 12 chrI:4175908-4175988 7.36e-03 26_[+3(3.04e-05)]_46 chrX:5319364-5319444 1.03e-02 80 chrIII:12399837-12399917 8.06e-02 58_[+2(1.57e-05)]_14 chrII:2860283-2860363 4.31e-01 80 chrII:6248664-6248744 2.19e-01 80 chrV:11239331-11239411 2.73e-01 80 chrI:14606041-14606121 1.44e-03 16_[+4(4.05e-05)]_16_[+5(5.93e-05)]_\ 32 chrI:1415963-1416043 4.75e-01 80 chrII:5836582-5836662 6.26e-01 80 chrIV:16400877-16400957 1.03e-03 31_[+3(1.55e-05)]_32_[+1(9.14e-05)]_\ 1 chrV:15553992-15554072 5.61e-02 50_[+3(1.55e-05)]_22 chrIII:3175112-3175192 1.52e-02 3_[+2(9.59e-05)]_36_[+4(8.20e-05)]_\ 25 chrII:5057441-5057521 1.57e-02 80 chrII:4238070-4238150 1.27e-04 8_[+4(2.69e-05)]_5_[+2(6.30e-05)]_2_\ [+4(2.69e-05)]_13_[+5(5.93e-05)]_20 chrIII:4905627-4905707 1.50e-01 80 chrV:12332027-12332107 9.32e-01 80 chrIV:4930853-4930933 7.91e-01 80 chrII:5399344-5399424 1.73e-02 24_[+4(8.20e-05)]_5_[+2(6.30e-05)]_\ 35 chrIII:4426752-4426832 6.30e-01 80 chrII:5577187-5577267 3.22e-02 80 chrV:4731513-4731593 9.56e-02 80 chrI:3873928-3874008 1.28e-02 12_[+4(2.69e-05)]_60 chrIV:14872548-14872628 1.71e-02 80 chrX:12693205-12693285 2.02e-01 80 chrIV:16398320-16398400 5.58e-02 80 chrIII:3916814-3916894 7.27e-01 80 chrIV:11310785-11310865 1.09e-03 8_[+4(4.05e-05)]_48_[+2(4.78e-05)]_\ 8 chrIII:8106625-8106705 5.18e-01 80 chrX:7794458-7794538 5.59e-01 80 chrI:13310420-13310500 1.66e-01 80 chrI:14721589-14721669 9.31e-02 80 chrI:2935710-2935790 1.86e-04 22_[+3(1.55e-05)]_50 chrX:11935068-11935148 1.52e-03 59_[+5(1.48e-05)]_13 chrX:5354642-5354722 7.87e-01 80 chrI:4633655-4633735 3.70e-03 47_[+2(1.57e-05)]_25 chrX:11252628-11252708 7.90e-02 25_[+4(8.20e-05)]_47 chrII:3521450-3521530 2.84e-03 [+2(7.96e-05)]_15_[+2(1.57e-05)]_20_\ [+1(6.11e-05)]_21 chrIV:9191335-9191415 8.30e-01 80 chrX:1858787-1858867 1.21e-04 44_[+3(1.55e-05)]_18_[+4(8.20e-05)]_\ 2 chrIII:10624764-10624844 2.51e-02 25_[+5(1.48e-05)]_47 chrV:15551829-15551909 1.86e-01 80 chrX:10821252-10821332 7.45e-02 54_[+2(1.57e-05)]_18 chrV:12780450-12780530 7.49e-01 80 chrV:20694098-20694178 2.54e-04 70_[+5(1.48e-05)]_2 chrI:9268902-9268982 4.91e-02 40_[+1(4.58e-05)]_32 chrI:9605735-9605815 9.40e-03 33_[+3(1.55e-05)]_39 chrII:9566195-9566275 5.35e-02 48_[+4(8.20e-05)]_24 chrIII:4568713-4568793 3.45e-03 9_[+4(1.32e-05)]_16_[+4(2.69e-05)]_\ 39 chrIV:3524814-3524894 1.12e-03 7_[+4(8.20e-05)]_43_[+1(3.05e-05)]_\ 14 chrX:4444232-4444312 2.95e-03 42_[+3(1.55e-05)]_18_[+4(8.20e-05)]_\ 4 chrIII:1604673-1604753 3.40e-03 1_[+2(9.59e-05)]_7_[+2(7.96e-05)]_\ 19_[+1(1.50e-05)]_29 chrIII:8768038-8768118 6.70e-02 43_[+4(8.20e-05)]_29 chrI:5316192-5316272 5.03e-01 80 chrIII:4171149-4171229 2.14e-03 15_[+4(1.32e-05)]_37_[+5(5.93e-05)]_\ 12 chrV:19126058-19126138 2.78e-01 80 chrIV:1388216-1388296 1.05e-02 14_[+1(1.50e-05)]_58 chrV:18723902-18723982 1.79e-01 80 chrII:12042320-12042400 4.34e-03 44_[+2(9.59e-05)]_28 chrIII:1824649-1824729 3.11e-03 50_[+4(2.69e-05)]_5_[+2(4.78e-05)]_\ 9 chrV:1875766-1875846 8.98e-02 80 chrIV:620478-620558 7.68e-04 16_[+3(1.55e-05)]_33_[+1(1.50e-05)]_\ 15 chrX:5707996-5708076 2.57e-02 44_[+3(1.55e-05)]_28 chrII:5772958-5773038 5.33e-01 80 chrIV:11026120-11026200 2.75e-01 80 chrV:19522609-19522689 9.64e-01 80 chrII:12678286-12678366 3.00e-01 80 chrX:12458151-12458231 1.48e-04 11_[+2(1.57e-05)]_53_[+5(3.01e-05)] chrX:15297407-15297487 5.42e-01 80 chrIV:9316176-9316256 1.09e-01 44_[+4(2.69e-05)]_28 chrIV:9477729-9477809 4.06e-02 62_[+3(6.25e-05)]_10 chrIV:16382357-16382437 4.40e-01 80 chrIII:4426953-4427033 6.30e-01 80 chrX:13653654-13653734 6.36e-01 80 chrI:11910912-11910992 8.15e-01 80 chrX:1880842-1880922 1.73e-01 80 chrI:4967564-4967644 5.22e-01 80 chrV:53415-53495 6.25e-01 80 chrII:3567721-3567801 7.04e-04 57_[+1(1.50e-05)]_15 chrIV:13386217-13386297 9.56e-03 16_[+4(8.20e-05)]_56 chrIII:640527-640607 5.74e-01 80 chrI:6164330-6164410 3.72e-01 80 chrIII:1122422-1122502 2.31e-01 80 chrIV:16863644-16863724 9.28e-01 80 chrIII:4508477-4508557 4.93e-01 80 chrX:10963803-10963883 5.45e-01 80 chrI:1175816-1175896 1.47e-03 38_[+4(2.69e-05)]_5_[+2(1.57e-05)]_\ 21 chrIII:11236968-11237048 6.34e-02 80 chrIII:5555078-5555158 1.09e-04 9_[+2(3.17e-05)]_63 chrIV:143979-144059 2.52e-03 80 chrIV:17087559-17087639 7.69e-01 80 chrII:3439356-3439436 1.15e-05 25_[+2(1.57e-05)]_19_[+1(1.50e-05)]_\ 20 chrX:9637884-9637964 1.98e-02 15_[+5(3.01e-05)]_57 chrV:1003936-1004016 8.96e-01 80 chrII:6741573-6741653 5.59e-02 31_[+2(6.30e-05)]_41 chrX:6371400-6371480 5.82e-02 80 chrIII:5211186-5211266 1.22e-01 22_[+2(6.30e-05)]_50 chrII:14528442-14528522 1.27e-01 14_[+2(3.17e-05)]_58 chrIII:6158744-6158824 3.04e-02 46_[+3(1.55e-05)]_26 chrII:8547092-8547172 3.77e-02 80 chrI:9267178-9267258 3.00e-01 80 chrI:1823221-1823301 3.05e-01 80 chrV:11113333-11113413 2.26e-01 26_[+4(8.20e-05)]_46 chrI:13331080-13331160 2.59e-01 80 chrI:5176381-5176461 3.70e-02 80 chrX:16604723-16604803 3.31e-01 80 chrX:13121245-13121325 1.11e-03 30_[+1(1.50e-05)]_8_[+4(8.20e-05)]_\ 26 chrI:13297707-13297787 4.57e-02 13_[+5(3.01e-05)]_59 chrV:13962158-13962238 1.40e-03 48_[+4(1.32e-05)]_3_[+2(1.57e-05)]_\ 13 chrX:10132656-10132736 7.20e-02 24_[+4(8.20e-05)]_48 chrV:12596980-12597060 5.92e-02 80 chrX:9622667-9622747 9.86e-01 80 chrIV:11549879-11549959 4.62e-01 80 chrII:5292301-5292381 4.85e-01 80 chrI:1958505-1958585 2.92e-02 39_[+4(8.20e-05)]_15_[+4(8.20e-05)]_\ 10 chrX:6903159-6903239 1.37e-03 50_[+3(4.68e-05)]_22 chrX:17030514-17030594 4.03e-01 80 chrI:11323370-11323450 1.48e-02 80 chrX:6867851-6867931 2.04e-01 80 chrIV:16776059-16776139 2.53e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************