******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ccch-3.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:6348130-6348210 1.0000 80 chrI:3987257-3987337 1.0000 80 chrIV:10483846-10483926 1.0000 80 chrV:5917820-5917900 1.0000 80 chrIII:10460727-10460807 1.0000 80 chrIV:17281289-17281369 1.0000 80 chrII:6913431-6913511 1.0000 80 chrIII:5871890-5871970 1.0000 80 chrX:9024346-9024426 1.0000 80 chrIII:8307506-8307586 1.0000 80 chrV:724527-724607 1.0000 80 chrX:14679367-14679447 1.0000 80 chrIII:8443780-8443860 1.0000 80 chrV:12870106-12870186 1.0000 80 chrII:14528435-14528515 1.0000 80 chrIII:9868275-9868355 1.0000 80 chrV:13468337-13468417 1.0000 80 chrIV:796793-796873 1.0000 80 chrII:6061661-6061741 1.0000 80 chrIV:15932036-15932116 1.0000 80 chrIV:9074456-9074536 1.0000 80 chrV:13313224-13313304 1.0000 80 chrV:4823932-4824012 1.0000 80 chrV:10526099-10526179 1.0000 80 chrV:9318218-9318298 1.0000 80 chrV:13656807-13656887 1.0000 80 chrIII:1601588-1601668 1.0000 80 chrV:10320315-10320395 1.0000 80 chrIV:9806225-9806305 1.0000 80 chrIII:5721967-5722047 1.0000 80 chrX:6253937-6254017 1.0000 80 chrIV:12034025-12034105 1.0000 80 chrV:13715474-13715554 1.0000 80 chrV:11039751-11039831 1.0000 80 chrI:461720-461800 1.0000 80 chrIII:640497-640577 1.0000 80 chrIII:13464544-13464624 1.0000 80 chrI:7081963-7082043 1.0000 80 chrX:13283617-13283697 1.0000 80 chrIV:14611442-14611522 1.0000 80 chrX:16300465-16300545 1.0000 80 chrII:2889357-2889437 1.0000 80 chrX:13745223-13745303 1.0000 80 chrV:14055215-14055295 1.0000 80 chrI:9327517-9327597 1.0000 80 chrIII:10270960-10271040 1.0000 80 chrIII:11091878-11091958 1.0000 80 chrII:11290601-11290681 1.0000 80 chrX:12018025-12018105 1.0000 80 chrV:1154122-1154202 1.0000 80 chrI:11374413-11374493 1.0000 80 chrII:9940595-9940675 1.0000 80 chrX:2364853-2364933 1.0000 80 chrIII:11946510-11946590 1.0000 80 chrIII:4999174-4999254 1.0000 80 chrII:11980259-11980339 1.0000 80 chrI:5165017-5165097 1.0000 80 chrIII:7520790-7520870 1.0000 80 chrV:10356093-10356173 1.0000 80 chrIII:11317368-11317448 1.0000 80 chrV:20694188-20694268 1.0000 80 chrIII:11792759-11792839 1.0000 80 chrII:5358359-5358439 1.0000 80 chrIV:12391298-12391378 1.0000 80 chrIV:8015985-8016065 1.0000 80 chrV:11124083-11124163 1.0000 80 chrV:11933372-11933452 1.0000 80 chrI:7772612-7772692 1.0000 80 chrIII:5172670-5172750 1.0000 80 chrII:6097638-6097718 1.0000 80 chrV:1875690-1875770 1.0000 80 chrI:9267191-9267271 1.0000 80 chrII:4740116-4740196 1.0000 80 chrX:9091555-9091635 1.0000 80 chrIII:3476317-3476397 1.0000 80 chrII:13199852-13199932 1.0000 80 chrX:8638916-8638996 1.0000 80 chrII:14154521-14154601 1.0000 80 chrII:14561872-14561952 1.0000 80 chrII:6250913-6250993 1.0000 80 chrIV:4728127-4728207 1.0000 80 chrI:11978718-11978798 1.0000 80 chrIV:17087516-17087596 1.0000 80 chrII:14143963-14144043 1.0000 80 chrIV:6321879-6321959 1.0000 80 chrX:12363127-12363207 1.0000 80 chrIV:1745730-1745810 1.0000 80 chrIII:9861607-9861687 1.0000 80 chrII:9591175-9591255 1.0000 80 chrV:10894764-10894844 1.0000 80 chrX:12458166-12458246 1.0000 80 chrX:4444436-4444516 1.0000 80 chrIII:4689732-4689812 1.0000 80 chrX:489872-489952 1.0000 80 chrX:16056521-16056601 1.0000 80 chrX:15297531-15297611 1.0000 80 chrII:4299441-4299521 1.0000 80 chrV:14685704-14685784 1.0000 80 chrIII:11371390-11371470 1.0000 80 chrIV:192220-192300 1.0000 80 chrX:6292296-6292376 1.0000 80 chrX:1880797-1880877 1.0000 80 chrX:1389595-1389675 1.0000 80 chrIII:10621424-10621504 1.0000 80 chrV:15085563-15085643 1.0000 80 chrII:10542209-10542289 1.0000 80 chrI:1416055-1416135 1.0000 80 chrX:16682095-16682175 1.0000 80 chrI:5706928-5707008 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ccch-3/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ccch-3.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 109 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 8720 N= 109 sample: seed= 0 hsfrac= 0 searchsize= 8720 norand= no csites= 1000 Letter frequencies in dataset: A 0.293 C 0.209 G 0.216 T 0.282 Background letter frequencies (from file dataset with add-one prior applied): A 0.293 C 0.209 G 0.216 T 0.282 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CTCGGCCA MEME-1 width = 8 sites = 32 llr = 283 E-value = 2.0e-020 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCGGCCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :13::::8 pos.-specific C 8:7::aa: probability G :1:9a::2 matrix T 18:1:::: bits 2.3 * * 2.0 *** 1.8 **** 1.6 **** Relative 1.4 * **** Entropy 1.1 * ****** (12.8 bits) 0.9 * ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTCGGCCA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCGGCCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:192220-192300 20 7.36e-06 AGCACGATTT CTCGGCCA CGCGCCGTGT chrII:6097638-6097718 36 7.36e-06 GAGGGCATTC CTCGGCCA TATTACGATA chrV:11124083-11124163 62 7.36e-06 TCTCGGGTTC CTCGGCCA TTTTTATCGG chrV:10320315-10320395 55 7.36e-06 CACGCGTTCT CTCGGCCA TGTACTCCTC chrIII:8443780-8443860 5 7.36e-06 ATTT CTCGGCCA TTCAAACTAG chrIV:10483846-10483926 64 7.36e-06 AGCATAAATC CTCGGCCA CGGTTTGTG chrV:15085563-15085643 28 2.31e-05 ATGGAAGAAA CTAGGCCA GCAGGCCACG chrIV:6321879-6321959 16 2.31e-05 AAACGGTAAA CTAGGCCA GGGGAAATGT chrII:4740116-4740196 68 2.31e-05 GTGCGAGTTT CTAGGCCA CGCGG chrII:5358359-5358439 64 2.31e-05 GGTGCGATTT CTAGGCCA GCAGGGCTC chrV:10356093-10356173 45 2.31e-05 GAGGGATATT CTAGGCCA TATGTAGCAA chrIII:7520790-7520870 67 2.31e-05 AATTTGGATT CTAGGCCA TGCAGT chrI:11374413-11374493 55 2.31e-05 CGAGCACATC CTCGGCCG TGTACTCCTC chrIII:10270960-10271040 30 2.31e-05 GAGGAGAATT CTAGGCCA CGTCTCCTCC chrV:13468337-13468417 35 2.31e-05 TGTGCGTTTT CTAGGCCA TTTTGGCGTG chrIV:12391298-12391378 50 3.64e-05 TCGTGGCCGC CACGGCCA TGGCCTAGAA chrII:2889357-2889437 48 3.64e-05 AATCGGTCGT CGCGGCCA CGGAGTCCTC chrIII:9868275-9868355 56 3.64e-05 ACCTCTAGTC CGCGGCCA CCGGAAAAGC chrV:14685704-14685784 22 4.63e-05 TCTGCAAAAC TTCGGCCA GGTGCTGAAA chrV:14055215-14055295 25 4.63e-05 CCGATATTTC TTCGGCCA CCATGCGGCG chrIII:8307506-8307586 58 4.63e-05 TTTGTGAAAC TTCGGCCA CGTTTTGTGT chrV:13313224-13313304 25 5.39e-05 CAATCGATTT CTAGGCCG TCGGCCGTGT chrX:13283617-13283697 69 6.35e-05 TAGACAGACG CTCTGCCA CTGA chrV:12870106-12870186 40 6.35e-05 CGCGCACTTC CTCTGCCA TTTCATTTGC chrI:461720-461800 25 9.73e-05 CTAACATCTC CGCGGCCG CCCAGTGGTG chrIII:5871890-5871970 52 9.73e-05 GAGAGGAGTG CACGGCCG AGAAAAGTCC chrI:3987257-3987337 37 9.73e-05 GAGAGGAGTA CACGGCCG AGAATCTATG chrIII:5172670-5172750 50 1.05e-04 CCGAAGAAAT GTCGGCCA TGAGACTGGG chrV:10526099-10526179 23 1.26e-04 GATAAAAAAG TTAGGCCA TCCTTTCTCA chrIII:9861607-9861687 67 1.57e-04 TCCTTAACCA CTCGGACA TGACTG chrIV:15932036-15932116 33 1.87e-04 gggttcaatt cccggccg GGGAGAACTT chrIII:11371390-11371470 69 2.34e-04 CAGGCAAACA CACTGCCA CTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCGGCCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:192220-192300 7.4e-06 19_[+1]_53 chrII:6097638-6097718 7.4e-06 35_[+1]_37 chrV:11124083-11124163 7.4e-06 61_[+1]_11 chrV:10320315-10320395 7.4e-06 54_[+1]_18 chrIII:8443780-8443860 7.4e-06 4_[+1]_68 chrIV:10483846-10483926 7.4e-06 63_[+1]_9 chrV:15085563-15085643 2.3e-05 27_[+1]_45 chrIV:6321879-6321959 2.3e-05 15_[+1]_57 chrII:4740116-4740196 2.3e-05 67_[+1]_5 chrII:5358359-5358439 2.3e-05 63_[+1]_9 chrV:10356093-10356173 2.3e-05 44_[+1]_28 chrIII:7520790-7520870 2.3e-05 66_[+1]_6 chrI:11374413-11374493 2.3e-05 54_[+1]_18 chrIII:10270960-10271040 2.3e-05 29_[+1]_43 chrV:13468337-13468417 2.3e-05 34_[+1]_38 chrIV:12391298-12391378 3.6e-05 49_[+1]_23 chrII:2889357-2889437 3.6e-05 47_[+1]_25 chrIII:9868275-9868355 3.6e-05 55_[+1]_17 chrV:14685704-14685784 4.6e-05 21_[+1]_51 chrV:14055215-14055295 4.6e-05 24_[+1]_48 chrIII:8307506-8307586 4.6e-05 57_[+1]_15 chrV:13313224-13313304 5.4e-05 24_[+1]_48 chrX:13283617-13283697 6.3e-05 68_[+1]_4 chrV:12870106-12870186 6.3e-05 39_[+1]_33 chrI:461720-461800 9.7e-05 24_[+1]_48 chrIII:5871890-5871970 9.7e-05 51_[+1]_21 chrI:3987257-3987337 9.7e-05 36_[+1]_36 chrIII:5172670-5172750 0.0001 49_[+1]_23 chrV:10526099-10526179 0.00013 22_[+1]_50 chrIII:9861607-9861687 0.00016 66_[+1]_6 chrIV:15932036-15932116 0.00019 32_[+1]_40 chrIII:11371390-11371470 0.00023 68_[+1]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCGGCCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCGGCCA width=8 seqs=32 chrIV:192220-192300 ( 20) CTCGGCCA 1 chrII:6097638-6097718 ( 36) CTCGGCCA 1 chrV:11124083-11124163 ( 62) CTCGGCCA 1 chrV:10320315-10320395 ( 55) CTCGGCCA 1 chrIII:8443780-8443860 ( 5) CTCGGCCA 1 chrIV:10483846-10483926 ( 64) CTCGGCCA 1 chrV:15085563-15085643 ( 28) CTAGGCCA 1 chrIV:6321879-6321959 ( 16) CTAGGCCA 1 chrII:4740116-4740196 ( 68) CTAGGCCA 1 chrII:5358359-5358439 ( 64) CTAGGCCA 1 chrV:10356093-10356173 ( 45) CTAGGCCA 1 chrIII:7520790-7520870 ( 67) CTAGGCCA 1 chrI:11374413-11374493 ( 55) CTCGGCCG 1 chrIII:10270960-10271040 ( 30) CTAGGCCA 1 chrV:13468337-13468417 ( 35) CTAGGCCA 1 chrIV:12391298-12391378 ( 50) CACGGCCA 1 chrII:2889357-2889437 ( 48) CGCGGCCA 1 chrIII:9868275-9868355 ( 56) CGCGGCCA 1 chrV:14685704-14685784 ( 22) TTCGGCCA 1 chrV:14055215-14055295 ( 25) TTCGGCCA 1 chrIII:8307506-8307586 ( 58) TTCGGCCA 1 chrV:13313224-13313304 ( 25) CTAGGCCG 1 chrX:13283617-13283697 ( 69) CTCTGCCA 1 chrV:12870106-12870186 ( 40) CTCTGCCA 1 chrI:461720-461800 ( 25) CGCGGCCG 1 chrIII:5871890-5871970 ( 52) CACGGCCG 1 chrI:3987257-3987337 ( 37) CACGGCCG 1 chrIII:5172670-5172750 ( 50) GTCGGCCA 1 chrV:10526099-10526179 ( 23) TTAGGCCA 1 chrIII:9861607-9861687 ( 67) CTCGGACA 1 chrIV:15932036-15932116 ( 33) CCCGGCCG 1 chrIII:11371390-11371470 ( 69) CACTGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCGGCCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 7957 bayes= 8.69149 E= 2.0e-020 -1164 201 -279 -117 -123 -274 -121 141 10 172 -1164 -1164 -1164 -1164 207 -159 -1164 -1164 221 -1164 -322 221 -1164 -1164 -1164 226 -1164 -1164 147 -1164 -21 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCGGCCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 2.0e-020 0.000000 0.843750 0.031250 0.125000 0.125000 0.031250 0.093750 0.750000 0.312500 0.687500 0.000000 0.000000 0.000000 0.000000 0.906250 0.093750 0.000000 0.000000 1.000000 0.000000 0.031250 0.968750 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.812500 0.000000 0.187500 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCGGCCA MEME-1 regular expression -------------------------------------------------------------------------------- CT[CA]GGCCA -------------------------------------------------------------------------------- Time 1.52 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTACTCC MEME-2 width = 8 sites = 12 llr = 125 E-value = 7.7e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTACTCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :1:a:::: pos.-specific C ::::a:8a probability G :9:::::: matrix T a:a::a2: bits 2.3 * * 2.0 * * 1.8 ****** * 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (15.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGTACTCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTACTCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:192220-192300 35 1.30e-05 CCACGCGCCG TGTACTCC TCTCGAAGGA chrV:10894764-10894844 62 1.30e-05 CTCTGGTCCG TGTACTCC TCTTGGACAA chrIV:6321879-6321959 41 1.30e-05 TGTTCGGCCG TGTACTCC TCTCGAACAA chrIII:11946510-11946590 55 1.30e-05 CCCCACGCCG TGTACTCC TCCTGGACAA chrI:11374413-11374493 63 1.30e-05 TCCTCGGCCG TGTACTCC TCTCGGACAA chrI:461720-461800 41 1.30e-05 CGCCCAGTGG TGTACTCC TCTCGGGTGA chrV:10320315-10320395 63 1.30e-05 CTCTCGGCCA TGTACTCC TCTCGGACAA chrV:13313224-13313304 40 1.30e-05 CCGTCGGCCG TGTACTCC TCGTGAAATA chrV:13468337-13468417 51 1.30e-05 CATTTTGGCG TGTACTCC ACTCGGACTC chrIII:10621424-10621504 36 3.04e-05 TTCTCGTCCG TGTACTTC GAGAGGAAAA chrV:4823932-4824012 36 3.04e-05 ACGAAGCGTA TGTACTTC ATATCTTTTT chrX:12018025-12018105 31 4.80e-05 TAATATTTTA TATACTCC CTTGCGTCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTACTCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:192220-192300 1.3e-05 34_[+2]_38 chrV:10894764-10894844 1.3e-05 61_[+2]_11 chrIV:6321879-6321959 1.3e-05 40_[+2]_32 chrIII:11946510-11946590 1.3e-05 54_[+2]_18 chrI:11374413-11374493 1.3e-05 62_[+2]_10 chrI:461720-461800 1.3e-05 40_[+2]_32 chrV:10320315-10320395 1.3e-05 62_[+2]_10 chrV:13313224-13313304 1.3e-05 39_[+2]_33 chrV:13468337-13468417 1.3e-05 50_[+2]_22 chrIII:10621424-10621504 3e-05 35_[+2]_37 chrV:4823932-4824012 3e-05 35_[+2]_37 chrX:12018025-12018105 4.8e-05 30_[+2]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTACTCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTACTCC width=8 seqs=12 chrIV:192220-192300 ( 35) TGTACTCC 1 chrV:10894764-10894844 ( 62) TGTACTCC 1 chrIV:6321879-6321959 ( 41) TGTACTCC 1 chrIII:11946510-11946590 ( 55) TGTACTCC 1 chrI:11374413-11374493 ( 63) TGTACTCC 1 chrI:461720-461800 ( 41) TGTACTCC 1 chrV:10320315-10320395 ( 63) TGTACTCC 1 chrV:13313224-13313304 ( 40) TGTACTCC 1 chrV:13468337-13468417 ( 51) TGTACTCC 1 chrIII:10621424-10621504 ( 36) TGTACTTC 1 chrV:4823932-4824012 ( 36) TGTACTTC 1 chrX:12018025-12018105 ( 31) TATACTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTACTCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 7957 bayes= 9.02925 E= 7.7e-005 -1023 -1023 -1023 183 -181 -1023 208 -1023 -1023 -1023 -1023 183 177 -1023 -1023 -1023 -1023 226 -1023 -1023 -1023 -1023 -1023 183 -1023 199 -1023 -76 -1023 226 -1023 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTACTCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 7.7e-005 0.000000 0.000000 0.000000 1.000000 0.083333 0.000000 0.916667 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.833333 0.000000 0.166667 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTACTCC MEME-2 regular expression -------------------------------------------------------------------------------- TGTACTCC -------------------------------------------------------------------------------- Time 2.72 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGAGAGG MEME-3 width = 8 sites = 16 llr = 152 E-value = 2.6e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGAGAGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::8:9:: pos.-specific C 89::::1: probability G ::9:a:9a matrix T 2113:1:: bits 2.3 * * 2.0 * * 1.8 ** * ** 1.6 *** * ** Relative 1.4 *** * ** Entropy 1.1 *** **** (13.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCGAGAGG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGAGAGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:7520790-7520870 23 8.16e-06 AATAAGTTGT CCGAGAGG AGTTCACCAC chrIII:10270960-10271040 46 8.16e-06 CACGTCTCCT CCGAGAGG AGTACGCCGA chrV:13468337-13468417 1 8.16e-06 . CCGAGAGG GCTACACGAC chrIII:9868275-9868355 13 8.16e-06 AAATTATTTT CCGAGAGG ACTCCGCCAG chrIII:5871890-5871970 40 8.16e-06 gaaACGTTGT CCGAGAGG AGTGCACGGC chrII:6913431-6913511 38 8.16e-06 AATTTATTGT CCGAGAGG AGTACACGAC chrI:3987257-3987337 25 8.16e-06 CACGCTTTGT CCGAGAGG AGTACACGGC chrII:6061661-6061741 9 1.60e-05 CATCTTGT CCGTGAGG AGTACACGGC chrX:8638916-8638996 43 2.70e-05 CGACTGCAGA TCGAGAGG TCCCTGGTTC chrI:5706928-5707008 65 3.49e-05 GCGTTGCTGG CCGAGTGG TTGTGCGC chrI:11374413-11374493 19 3.49e-05 TCCAGCTTGT CCGAGTGG AGTACACGCT chrII:11980259-11980339 36 5.34e-05 CCCCAGACAA TCGTGAGG TGTCCAGCAA chrIII:11091878-11091958 67 5.34e-05 TTCCCTCAAA TCGTGAGG TGTCAT chrV:5917820-5917900 49 7.16e-05 GAGCGCTTAT CCTAGAGG AGTACACGGT chrIII:11946510-11946590 1 8.26e-05 . CTGAGAGG ACTACACTGC chrI:7772612-7772692 66 1.01e-04 TTCACAGATT CCGTGACG TGTCAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGAGAGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:7520790-7520870 8.2e-06 22_[+3]_50 chrIII:10270960-10271040 8.2e-06 45_[+3]_27 chrV:13468337-13468417 8.2e-06 [+3]_72 chrIII:9868275-9868355 8.2e-06 12_[+3]_60 chrIII:5871890-5871970 8.2e-06 39_[+3]_33 chrII:6913431-6913511 8.2e-06 37_[+3]_35 chrI:3987257-3987337 8.2e-06 24_[+3]_48 chrII:6061661-6061741 1.6e-05 8_[+3]_64 chrX:8638916-8638996 2.7e-05 42_[+3]_30 chrI:5706928-5707008 3.5e-05 64_[+3]_8 chrI:11374413-11374493 3.5e-05 18_[+3]_54 chrII:11980259-11980339 5.3e-05 35_[+3]_37 chrIII:11091878-11091958 5.3e-05 66_[+3]_6 chrV:5917820-5917900 7.2e-05 48_[+3]_24 chrIII:11946510-11946590 8.3e-05 [+3]_72 chrI:7772612-7772692 0.0001 65_[+3]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGAGAGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGAGAGG width=8 seqs=16 chrIII:7520790-7520870 ( 23) CCGAGAGG 1 chrIII:10270960-10271040 ( 46) CCGAGAGG 1 chrV:13468337-13468417 ( 1) CCGAGAGG 1 chrIII:9868275-9868355 ( 13) CCGAGAGG 1 chrIII:5871890-5871970 ( 40) CCGAGAGG 1 chrII:6913431-6913511 ( 38) CCGAGAGG 1 chrI:3987257-3987337 ( 25) CCGAGAGG 1 chrII:6061661-6061741 ( 9) CCGTGAGG 1 chrX:8638916-8638996 ( 43) TCGAGAGG 1 chrI:5706928-5707008 ( 65) CCGAGTGG 1 chrI:11374413-11374493 ( 19) CCGAGTGG 1 chrII:11980259-11980339 ( 36) TCGTGAGG 1 chrIII:11091878-11091958 ( 67) TCGTGAGG 1 chrV:5917820-5917900 ( 49) CCTAGAGG 1 chrIII:11946510-11946590 ( 1) CTGAGAGG 1 chrI:7772612-7772692 ( 66) CCGTGACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGAGAGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 7957 bayes= 9.69323 E= 2.6e-004 -1064 196 -1064 -59 -1064 216 -1064 -217 -1064 -1064 211 -217 136 -1064 -1064 -17 -1064 -1064 221 -1064 158 -1064 -1064 -117 -1064 -174 211 -1064 -1064 -1064 221 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGAGAGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 2.6e-004 0.000000 0.812500 0.000000 0.187500 0.000000 0.937500 0.000000 0.062500 0.000000 0.000000 0.937500 0.062500 0.750000 0.000000 0.000000 0.250000 0.000000 0.000000 1.000000 0.000000 0.875000 0.000000 0.000000 0.125000 0.000000 0.062500 0.937500 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGAGAGG MEME-3 regular expression -------------------------------------------------------------------------------- CCG[AT]GAGG -------------------------------------------------------------------------------- Time 3.88 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGGCCGA MEME-4 width = 8 sites = 25 llr = 200 E-value = 8.0e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGGCCGA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 2:::12:8 pos.-specific C :2::98:1 probability G 81aa::72 matrix T :8::::3: bits 2.3 * 2.0 ** 1.8 ** 1.6 *** Relative 1.4 * ***** Entropy 1.1 * ***** (11.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGGCCGA consensus A AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCCGA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:11374413-11374493 40 7.86e-06 ACACGCTGGC GTGGCCGA GCACATCCTC chrV:14055215-14055295 11 7.86e-06 ACACGGCTGC GTGGCCGA TATTTCTTCG chrI:5165017-5165097 19 1.81e-05 CACAATGGCC GTGGCCTA AAAATCTCAA chrI:461720-461800 10 1.81e-05 CACAAGCGG GTGGCCTA ACATCTCCGC chrIII:8307506-8307586 37 2.39e-05 CCGAAATAAC GCGGCCGA ATTTTTGTGA chrII:5358359-5358439 42 2.97e-05 CACCATTGCA GTGGCCGG GAGCGGTGCG chrX:8638916-8638996 20 5.14e-05 GTATAGCTCA GTGGCAGA GCATTCGACT chrIII:11792759-11792839 37 5.14e-05 GTATAGCTCA GTGGCAGA GCGTCTGTCT chrV:10526099-10526179 7 5.14e-05 CGGCGG ATGGCCGA TAAAAAAGTT chrIII:5172670-5172750 36 6.30e-05 TTTTCCGGGC GGGGCCGA AGAAATGTCG chrIV:12391298-12391378 42 6.30e-05 CATCAAACTC GTGGCCGC CACGGCCATG chrV:10894764-10894844 28 8.16e-05 CACTTGTGTC GCGGCCTA GAAATGTTTG chrV:5917820-5917900 70 8.16e-05 ACACGGTCGT GTGGACGA GGA chrIII:10621424-10621504 7 1.22e-04 CAGCGC ATGGCCTA GCGACGGGGG chrIII:3476317-3476397 44 1.22e-04 GTTAAGGTGA GTGGCATA GTTTTTGTAC chrV:11933372-11933452 3 1.22e-04 AG GTGGCATA GTACTGACCT chrIV:10483846-10483926 37 1.22e-04 CCCGGCAACA ATGGCCTA GGTTCCACAA chrII:6097638-6097718 3 1.38e-04 AC ACGGCCGA GCATGCTCCG chrIII:11371390-11371470 55 1.54e-04 GACCTTCAGA GTGGCAGG CAAACACACT chrII:6061661-6061741 29 1.54e-04 TACACGGCTG ATGGCCGG GAAGTTTTCT chrII:6913431-6913511 58 1.54e-04 TACACGACTG ATGGCCGG AGAGTTTTCT chrIV:192220-192300 1 1.96e-04 . GCGGCCGC CAGCACGATT chrIV:9806225-9806305 3 1.96e-04 TC GTCGCCGA AATTTACTAC chrI:9267191-9267271 55 3.20e-04 GCAGGGATTT GTGGAAGA CTTTAAGGGA chrIII:7520790-7520870 43 4.30e-04 TTCACCACAT GGGGACGA GGAATGAATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCCGA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:11374413-11374493 7.9e-06 39_[+4]_33 chrV:14055215-14055295 7.9e-06 10_[+4]_62 chrI:5165017-5165097 1.8e-05 18_[+4]_54 chrI:461720-461800 1.8e-05 9_[+4]_63 chrIII:8307506-8307586 2.4e-05 36_[+4]_36 chrII:5358359-5358439 3e-05 41_[+4]_31 chrX:8638916-8638996 5.1e-05 19_[+4]_53 chrIII:11792759-11792839 5.1e-05 36_[+4]_36 chrV:10526099-10526179 5.1e-05 6_[+4]_66 chrIII:5172670-5172750 6.3e-05 35_[+4]_37 chrIV:12391298-12391378 6.3e-05 41_[+4]_31 chrV:10894764-10894844 8.2e-05 27_[+4]_45 chrV:5917820-5917900 8.2e-05 69_[+4]_3 chrIII:10621424-10621504 0.00012 6_[+4]_66 chrIII:3476317-3476397 0.00012 43_[+4]_29 chrV:11933372-11933452 0.00012 2_[+4]_70 chrIV:10483846-10483926 0.00012 36_[+4]_36 chrII:6097638-6097718 0.00014 2_[+4]_70 chrIII:11371390-11371470 0.00015 54_[+4]_18 chrII:6061661-6061741 0.00015 28_[+4]_44 chrII:6913431-6913511 0.00015 57_[+4]_15 chrIV:192220-192300 0.0002 [+4]_72 chrIV:9806225-9806305 0.0002 2_[+4]_70 chrI:9267191-9267271 0.00032 54_[+4]_18 chrIII:7520790-7520870 0.00043 42_[+4]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCCGA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGGCCGA width=8 seqs=25 chrI:11374413-11374493 ( 40) GTGGCCGA 1 chrV:14055215-14055295 ( 11) GTGGCCGA 1 chrI:5165017-5165097 ( 19) GTGGCCTA 1 chrI:461720-461800 ( 10) GTGGCCTA 1 chrIII:8307506-8307586 ( 37) GCGGCCGA 1 chrII:5358359-5358439 ( 42) GTGGCCGG 1 chrX:8638916-8638996 ( 20) GTGGCAGA 1 chrIII:11792759-11792839 ( 37) GTGGCAGA 1 chrV:10526099-10526179 ( 7) ATGGCCGA 1 chrIII:5172670-5172750 ( 36) GGGGCCGA 1 chrIV:12391298-12391378 ( 42) GTGGCCGC 1 chrV:10894764-10894844 ( 28) GCGGCCTA 1 chrV:5917820-5917900 ( 70) GTGGACGA 1 chrIII:10621424-10621504 ( 7) ATGGCCTA 1 chrIII:3476317-3476397 ( 44) GTGGCATA 1 chrV:11933372-11933452 ( 3) GTGGCATA 1 chrIV:10483846-10483926 ( 37) ATGGCCTA 1 chrII:6097638-6097718 ( 3) ACGGCCGA 1 chrIII:11371390-11371470 ( 55) GTGGCAGG 1 chrII:6061661-6061741 ( 29) ATGGCCGG 1 chrII:6913431-6913511 ( 58) ATGGCCGG 1 chrIV:192220-192300 ( 1) GCGGCCGC 1 chrIV:9806225-9806305 ( 3) GTCGCCGA 1 chrI:9267191-9267271 ( 55) GTGGAAGA 1 chrIII:7520790-7520870 ( 43) GGGGACGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCCGA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 7957 bayes= 8.80097 E= 8.0e-001 -29 -1129 181 -1129 -1129 -39 -143 143 -1129 -239 215 -1129 -1129 -1129 221 -1129 -128 207 -1129 -1129 -29 186 -1129 -1129 -1129 -1129 173 -1 138 -139 -44 -1129 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCCGA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 8.0e-001 0.240000 0.000000 0.760000 0.000000 0.000000 0.160000 0.080000 0.760000 0.000000 0.040000 0.960000 0.000000 0.000000 0.000000 1.000000 0.000000 0.120000 0.880000 0.000000 0.000000 0.240000 0.760000 0.000000 0.000000 0.000000 0.000000 0.720000 0.280000 0.760000 0.080000 0.160000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGCCGA MEME-4 regular expression -------------------------------------------------------------------------------- [GA]TGGC[CA][GT]A -------------------------------------------------------------------------------- Time 5.42 secs. ******************************************************************************** ******************************************************************************** MOTIF GMGCGCTC MEME-5 width = 8 sites = 8 llr = 83 E-value = 7.3e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GMGCGCTC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :5::::3: pos.-specific C :4:a:a:a probability G a1a:a::: matrix T ::::::8: bits 2.3 * **** * 2.0 * **** * 1.8 * **** * 1.6 * **** * Relative 1.4 * **** * Entropy 1.1 * **** * (15.0 bits) 0.9 * ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAGCGCTC consensus C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGCGCTC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:6292296-6292376 26 1.30e-05 CATGCAAAGC GAGCGCTC TACCCCTGAG chrX:12458166-12458246 54 1.30e-05 CATGCTAAGG GAGCGCTC TACCACTGAG chrII:14154521-14154601 18 1.30e-05 CAACGTGCAA GCGCGCTC CATTGAGACA chrII:2889357-2889437 23 1.30e-05 TTTTAGGCAA GCGCGCTC TATGGAGAAT chrV:9318218-9318298 4 1.30e-05 GTA GAGCGCTC GCTTCGCATG chrV:10894764-10894844 13 3.22e-05 TGAAGCAGTA GAGCGCAC TTGTGTCGCG chrV:1154122-1154202 38 3.22e-05 ATTCAGGCAT GGGCGCTC TGGCGGGAGA chrV:12870106-12870186 29 3.22e-05 AAGAGAAAAC GCGCGCAC TTCCTCTGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGCGCTC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6292296-6292376 1.3e-05 25_[+5]_47 chrX:12458166-12458246 1.3e-05 53_[+5]_19 chrII:14154521-14154601 1.3e-05 17_[+5]_55 chrII:2889357-2889437 1.3e-05 22_[+5]_50 chrV:9318218-9318298 1.3e-05 3_[+5]_69 chrV:10894764-10894844 3.2e-05 12_[+5]_60 chrV:1154122-1154202 3.2e-05 37_[+5]_35 chrV:12870106-12870186 3.2e-05 28_[+5]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGCGCTC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GMGCGCTC width=8 seqs=8 chrX:6292296-6292376 ( 26) GAGCGCTC 1 chrX:12458166-12458246 ( 54) GAGCGCTC 1 chrII:14154521-14154601 ( 18) GCGCGCTC 1 chrII:2889357-2889437 ( 23) GCGCGCTC 1 chrV:9318218-9318298 ( 4) GAGCGCTC 1 chrV:10894764-10894844 ( 13) GAGCGCAC 1 chrV:1154122-1154202 ( 38) GGGCGCTC 1 chrV:12870106-12870186 ( 29) GCGCGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGCGCTC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 7957 bayes= 9.95656 E= 7.3e+001 -965 -965 221 -965 77 84 -79 -965 -965 -965 221 -965 -965 225 -965 -965 -965 -965 221 -965 -965 225 -965 -965 -23 -965 -965 141 -965 225 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGCGCTC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 7.3e+001 0.000000 0.000000 1.000000 0.000000 0.500000 0.375000 0.125000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.750000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGCGCTC MEME-5 regular expression -------------------------------------------------------------------------------- G[AC]GCGC[TA]C -------------------------------------------------------------------------------- Time 6.48 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:6348130-6348210 9.43e-01 80 chrI:3987257-3987337 4.84e-05 2_[+3(8.16e-06)]_14_[+3(8.16e-06)]_\ 4_[+1(9.73e-05)]_36 chrIV:10483846-10483926 2.88e-03 63_[+1(7.36e-06)]_9 chrV:5917820-5917900 2.57e-05 48_[+3(7.16e-05)]_13_[+4(8.16e-05)]_\ 3 chrIII:10460727-10460807 5.52e-01 80 chrIV:17281289-17281369 8.90e-01 80 chrII:6913431-6913511 1.56e-03 37_[+3(8.16e-06)]_35 chrIII:5871890-5871970 1.41e-05 39_[+3(8.16e-06)]_4_[+1(9.73e-05)]_\ 21 chrX:9024346-9024426 8.77e-01 80 chrIII:8307506-8307586 2.09e-04 36_[+4(2.39e-05)]_13_[+1(4.63e-05)]_\ 15 chrV:724527-724607 4.46e-01 80 chrX:14679367-14679447 9.38e-01 80 chrIII:8443780-8443860 2.09e-02 4_[+1(7.36e-06)]_6_[+1(2.31e-05)]_\ 54 chrV:12870106-12870186 4.85e-04 28_[+5(3.22e-05)]_3_[+1(6.35e-05)]_\ 33 chrII:14528435-14528515 9.71e-01 80 chrIII:9868275-9868355 8.37e-05 12_[+3(8.16e-06)]_35_[+1(3.64e-05)]_\ 17 chrV:13468337-13468417 1.16e-06 [+3(8.16e-06)]_26_[+1(2.31e-05)]_8_\ [+2(1.30e-05)]_22 chrIV:796793-796873 9.95e-01 80 chrII:6061661-6061741 8.83e-04 8_[+3(1.60e-05)]_64 chrIV:15932036-15932116 1.73e-01 80 chrIV:9074456-9074536 5.90e-01 80 chrV:13313224-13313304 1.97e-03 24_[+1(5.39e-05)]_7_[+2(1.30e-05)]_\ 33 chrV:4823932-4824012 1.74e-01 35_[+2(3.04e-05)]_37 chrV:10526099-10526179 2.97e-03 6_[+4(5.14e-05)]_66 chrV:9318218-9318298 9.31e-02 3_[+5(1.30e-05)]_69 chrV:13656807-13656887 9.58e-01 80 chrIII:1601588-1601668 1.70e-01 80 chrV:10320315-10320395 2.22e-04 32_[+1(2.31e-05)]_14_[+1(7.36e-06)]_\ [+2(1.30e-05)]_10 chrIV:9806225-9806305 1.57e-01 80 chrIII:5721967-5722047 9.94e-01 80 chrX:6253937-6254017 6.57e-01 80 chrIV:12034025-12034105 6.60e-01 80 chrV:13715474-13715554 2.30e-01 80 chrV:11039751-11039831 8.09e-01 80 chrI:461720-461800 2.78e-06 9_[+4(1.81e-05)]_7_[+1(9.73e-05)]_8_\ [+2(1.30e-05)]_32 chrIII:640497-640577 9.84e-01 80 chrIII:13464544-13464624 8.20e-01 80 chrI:7081963-7082043 9.81e-01 80 chrX:13283617-13283697 1.85e-01 68_[+1(6.35e-05)]_4 chrIV:14611442-14611522 3.71e-01 80 chrX:16300465-16300545 1.00e+00 80 chrII:2889357-2889437 8.94e-04 22_[+5(1.30e-05)]_17_[+1(3.64e-05)]_\ 25 chrX:13745223-13745303 6.33e-01 80 chrV:14055215-14055295 4.19e-04 10_[+4(7.86e-06)]_6_[+1(4.63e-05)]_\ 48 chrI:9327517-9327597 8.99e-01 80 chrIII:10270960-10271040 1.68e-05 29_[+1(2.31e-05)]_8_[+3(8.16e-06)]_\ 27 chrIII:11091878-11091958 2.76e-02 66_[+3(5.34e-05)]_6 chrII:11290601-11290681 9.89e-01 80 chrX:12018025-12018105 1.00e-01 30_[+2(4.80e-05)]_42 chrV:1154122-1154202 6.10e-02 37_[+5(3.22e-05)]_35 chrI:11374413-11374493 3.01e-08 18_[+3(3.49e-05)]_13_[+4(7.86e-06)]_\ 7_[+1(2.31e-05)]_[+2(1.30e-05)]_10 chrII:9940595-9940675 1.65e-01 80 chrX:2364853-2364933 7.65e-01 80 chrIII:11946510-11946590 2.41e-04 [+3(8.26e-05)]_46_[+2(1.30e-05)]_18 chrIII:4999174-4999254 9.74e-01 80 chrII:11980259-11980339 1.26e-01 35_[+3(5.34e-05)]_37 chrI:5165017-5165097 1.41e-01 18_[+4(1.81e-05)]_54 chrIII:7520790-7520870 4.60e-06 22_[+3(8.16e-06)]_36_[+1(2.31e-05)]_\ 6 chrV:10356093-10356173 2.95e-02 44_[+1(2.31e-05)]_28 chrIII:11317368-11317448 5.83e-01 80 chrV:20694188-20694268 1.15e-01 80 chrIII:11792759-11792839 1.26e-02 36_[+4(5.14e-05)]_36 chrII:5358359-5358439 6.37e-05 41_[+4(2.97e-05)]_14_[+1(2.31e-05)]_\ 9 chrIV:12391298-12391378 5.44e-04 41_[+4(6.30e-05)]_[+1(3.64e-05)]_23 chrIV:8015985-8016065 8.17e-01 80 chrV:11124083-11124163 2.79e-02 61_[+1(7.36e-06)]_11 chrV:11933372-11933452 4.17e-02 80 chrI:7772612-7772692 2.53e-01 80 chrIII:5172670-5172750 9.32e-04 35_[+4(6.30e-05)]_37 chrII:6097638-6097718 1.40e-03 1_[+1(9.73e-05)]_26_[+1(7.36e-06)]_\ 37 chrV:1875690-1875770 2.69e-01 80 chrI:9267191-9267271 2.19e-01 80 chrII:4740116-4740196 7.06e-02 48_[+1(4.63e-05)]_11_[+1(2.31e-05)]_\ 5 chrX:9091555-9091635 1.37e-01 80 chrIII:3476317-3476397 3.26e-02 80 chrII:13199852-13199932 6.28e-01 80 chrX:8638916-8638996 7.72e-04 19_[+4(5.14e-05)]_15_[+3(2.70e-05)]_\ 30 chrII:14154521-14154601 2.06e-02 17_[+5(1.30e-05)]_55 chrII:14561872-14561952 6.11e-01 80 chrII:6250913-6250993 5.82e-01 80 chrIV:4728127-4728207 9.37e-01 80 chrI:11978718-11978798 1.49e-01 80 chrIV:17087516-17087596 1.00e+00 80 chrII:14143963-14144043 6.62e-01 80 chrIV:6321879-6321959 1.15e-03 15_[+1(2.31e-05)]_17_[+2(1.30e-05)]_\ 32 chrX:12363127-12363207 4.69e-01 80 chrIV:1745730-1745810 7.10e-02 80 chrIII:9861607-9861687 9.24e-02 80 chrII:9591175-9591255 9.28e-01 80 chrV:10894764-10894844 1.79e-06 12_[+5(3.22e-05)]_7_[+4(8.16e-05)]_\ 26_[+2(1.30e-05)]_11 chrX:12458166-12458246 8.52e-03 53_[+5(1.30e-05)]_19 chrX:4444436-4444516 9.51e-01 80 chrIII:4689732-4689812 8.53e-01 80 chrX:489872-489952 9.08e-02 80 chrX:16056521-16056601 6.97e-01 80 chrX:15297531-15297611 7.63e-01 80 chrII:4299441-4299521 8.09e-01 80 chrV:14685704-14685784 1.20e-02 21_[+1(4.63e-05)]_51 chrIII:11371390-11371470 6.62e-03 80 chrIV:192220-192300 2.06e-05 19_[+1(7.36e-06)]_7_[+2(1.30e-05)]_\ 38 chrX:6292296-6292376 1.23e-02 25_[+5(1.30e-05)]_47 chrX:1880797-1880877 4.07e-01 80 chrX:1389595-1389675 9.87e-01 80 chrIII:10621424-10621504 1.94e-05 41_[+3(2.70e-05)]_31 chrV:15085563-15085643 1.26e-02 27_[+1(2.31e-05)]_45 chrII:10542209-10542289 9.14e-01 80 chrI:1416055-1416135 9.99e-01 80 chrX:16682095-16682175 5.55e-01 80 chrI:5706928-5707008 1.78e-02 64_[+3(3.49e-05)]_8 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c23n07.farnam.hpc.yale.internal ********************************************************************************