******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/blmp-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:7877972-7878052 1.0000 80 chrII:11881192-11881272 1.0000 80 chrI:14967035-14967115 1.0000 80 chrV:10602737-10602817 1.0000 80 chrX:16631979-16632059 1.0000 80 chrX:13387726-13387806 1.0000 80 chrII:4734627-4734707 1.0000 80 chrI:6868278-6868358 1.0000 80 chrX:6027274-6027354 1.0000 80 chrX:15888143-15888223 1.0000 80 chrIII:13695744-13695824 1.0000 80 chrI:397169-397249 1.0000 80 chrI:6372831-6372911 1.0000 80 chrX:12677259-12677339 1.0000 80 chrV:2675884-2675964 1.0000 80 chrI:2167906-2167986 1.0000 80 chrV:6744938-6745018 1.0000 80 chrIV:5704108-5704188 1.0000 80 chrII:8199934-8200014 1.0000 80 chrII:15260719-15260799 1.0000 80 chrI:7881652-7881732 1.0000 80 chrI:10405035-10405115 1.0000 80 chrX:3932093-3932173 1.0000 80 chrIII:3959362-3959442 1.0000 80 chrX:9764065-9764145 1.0000 80 chrII:11246668-11246748 1.0000 80 chrX:16647385-16647465 1.0000 80 chrX:17686106-17686186 1.0000 80 chrV:5386257-5386337 1.0000 80 chrX:12679720-12679800 1.0000 80 chrX:13726449-13726529 1.0000 80 chrII:5899238-5899318 1.0000 80 chrI:10352590-10352670 1.0000 80 chrV:13406645-13406725 1.0000 80 chrII:12820132-12820212 1.0000 80 chrV:12011848-12011928 1.0000 80 chrI:5880883-5880963 1.0000 80 chrI:763491-763571 1.0000 80 chrX:8045305-8045385 1.0000 80 chrI:6167588-6167668 1.0000 80 chrII:7242910-7242990 1.0000 80 chrX:14581010-14581090 1.0000 80 chrX:15273084-15273164 1.0000 80 chrIII:8579546-8579626 1.0000 80 chrI:6869094-6869174 1.0000 80 chrX:7553499-7553579 1.0000 80 chrII:11307488-11307568 1.0000 80 chrI:5882110-5882190 1.0000 80 chrX:4875446-4875526 1.0000 80 chrI:3251154-3251234 1.0000 80 chrX:9893256-9893336 1.0000 80 chrI:14458333-14458413 1.0000 80 chrV:20861222-20861302 1.0000 80 chrI:6866411-6866491 1.0000 80 chrX:3931147-3931227 1.0000 80 chrII:1241495-1241575 1.0000 80 chrI:6341127-6341207 1.0000 80 chrI:7527147-7527227 1.0000 80 chrX:16534010-16534090 1.0000 80 chrIII:8555861-8555941 1.0000 80 chrV:20713659-20713739 1.0000 80 chrX:12875001-12875081 1.0000 80 chrII:6989668-6989748 1.0000 80 chrIV:7836667-7836747 1.0000 80 chrII:8750200-8750280 1.0000 80 chrII:9019871-9019951 1.0000 80 chrIII:11241898-11241978 1.0000 80 chrIV:11718812-11718892 1.0000 80 chrIII:9300813-9300893 1.0000 80 chrI:10744425-10744505 1.0000 80 chrX:12940960-12941040 1.0000 80 chrI:7316373-7316453 1.0000 80 chrI:13062842-13062922 1.0000 80 chrIV:4641145-4641225 1.0000 80 chrX:8200370-8200450 1.0000 80 chrIV:10816154-10816234 1.0000 80 chrIII:11666972-11667052 1.0000 80 chrX:11665782-11665862 1.0000 80 chrI:5295350-5295430 1.0000 80 chrI:10284502-10284582 1.0000 80 chrV:11741226-11741306 1.0000 80 chrX:1309615-1309695 1.0000 80 chrII:11162561-11162641 1.0000 80 chrV:13259070-13259150 1.0000 80 chrI:5075620-5075700 1.0000 80 chrV:1892731-1892811 1.0000 80 chrII:11161820-11161900 1.0000 80 chrII:8094077-8094157 1.0000 80 chrII:4821986-4822066 1.0000 80 chrII:9232664-9232744 1.0000 80 chrIV:12401786-12401866 1.0000 80 chrV:11302858-11302938 1.0000 80 chrII:7496074-7496154 1.0000 80 chrIV:9673343-9673423 1.0000 80 chrIII:886841-886921 1.0000 80 chrIV:7440365-7440445 1.0000 80 chrIII:4391476-4391556 1.0000 80 chrIII:2634724-2634804 1.0000 80 chrIII:11378597-11378677 1.0000 80 chrI:8680294-8680374 1.0000 80 chrIV:3600099-3600179 1.0000 80 chrV:6349767-6349847 1.0000 80 chrV:10662145-10662225 1.0000 80 chrV:13963471-13963551 1.0000 80 chrII:8749273-8749353 1.0000 80 chrIII:13575757-13575837 1.0000 80 chrIV:7977591-7977671 1.0000 80 chrII:1200157-1200237 1.0000 80 chrII:8380327-8380407 1.0000 80 chrIII:5419689-5419769 1.0000 80 chrX:17070644-17070724 1.0000 80 chrV:10602181-10602261 1.0000 80 chrIII:6601444-6601524 1.0000 80 chrII:8730440-8730520 1.0000 80 chrV:14495605-14495685 1.0000 80 chrV:5819606-5819686 1.0000 80 chrX:8882319-8882399 1.0000 80 chrX:3982657-3982737 1.0000 80 chrX:16995330-16995410 1.0000 80 chrX:16552696-16552776 1.0000 80 chrIV:4399887-4399967 1.0000 80 chrII:8494508-8494588 1.0000 80 chrI:3283021-3283101 1.0000 80 chrI:11839697-11839777 1.0000 80 chrI:5210135-5210215 1.0000 80 chrIV:8317956-8318036 1.0000 80 chrIV:4688378-4688458 1.0000 80 chrII:10706140-10706220 1.0000 80 chrII:2977805-2977885 1.0000 80 chrIII:750183-750263 1.0000 80 chrII:9251696-9251776 1.0000 80 chrX:4663124-4663204 1.0000 80 chrIV:2323153-2323233 1.0000 80 chrV:8668333-8668413 1.0000 80 chrIV:3817403-3817483 1.0000 80 chrX:13146457-13146537 1.0000 80 chrIII:2873565-2873645 1.0000 80 chrX:7778966-7779046 1.0000 80 chrV:9225156-9225236 1.0000 80 chrI:10409017-10409097 1.0000 80 chrIV:14089892-14089972 1.0000 80 chrIII:568942-569022 1.0000 80 chrI:9698884-9698964 1.0000 80 chrII:2435733-2435813 1.0000 80 chrX:17682411-17682491 1.0000 80 chrIII:4189782-4189862 1.0000 80 chrIV:11937232-11937312 1.0000 80 chrX:5150568-5150648 1.0000 80 chrX:5071160-5071240 1.0000 80 chrX:16555869-16555949 1.0000 80 chrX:5075670-5075750 1.0000 80 chrII:11193651-11193731 1.0000 80 chrV:11680932-11681012 1.0000 80 chrX:16629923-16630003 1.0000 80 chrIII:9277990-9278070 1.0000 80 chrII:8438854-8438934 1.0000 80 chrV:6105605-6105685 1.0000 80 chrIV:5940774-5940854 1.0000 80 chrI:9399750-9399830 1.0000 80 chrX:13003316-13003396 1.0000 80 chrIII:13381865-13381945 1.0000 80 chrII:4876243-4876323 1.0000 80 chrII:11020849-11020929 1.0000 80 chrII:10523186-10523266 1.0000 80 chrI:6867500-6867580 1.0000 80 chrIV:12429607-12429687 1.0000 80 chrI:14991804-14991884 1.0000 80 chrV:14633466-14633546 1.0000 80 chrIV:10350299-10350379 1.0000 80 chrI:9427083-9427163 1.0000 80 chrII:8717725-8717805 1.0000 80 chrX:14903600-14903680 1.0000 80 chrI:10281874-10281954 1.0000 80 chrIV:1547254-1547334 1.0000 80 chrII:158502-158582 1.0000 80 chrX:16535383-16535463 1.0000 80 chrX:3785546-3785626 1.0000 80 chrIV:13884094-13884174 1.0000 80 chrX:10228524-10228604 1.0000 80 chrV:7066681-7066761 1.0000 80 chrV:13659318-13659398 1.0000 80 chrI:6333708-6333788 1.0000 80 chrIII:11742334-11742414 1.0000 80 chrX:2212854-2212934 1.0000 80 chrV:6354967-6355047 1.0000 80 chrI:9717519-9717599 1.0000 80 chrX:16634275-16634355 1.0000 80 chrIII:9867932-9868012 1.0000 80 chrIV:5858388-5858468 1.0000 80 chrX:15772873-15772953 1.0000 80 chrIII:6359344-6359424 1.0000 80 chrX:5339432-5339512 1.0000 80 chrIV:9123171-9123251 1.0000 80 chrII:13167657-13167737 1.0000 80 chrIII:8573993-8574073 1.0000 80 chrIII:3161768-3161848 1.0000 80 chrX:3832637-3832717 1.0000 80 chrX:7210626-7210706 1.0000 80 chrX:10317739-10317819 1.0000 80 chrV:9704038-9704118 1.0000 80 chrIII:8709893-8709973 1.0000 80 chrII:6714036-6714116 1.0000 80 chrII:8226108-8226188 1.0000 80 chrI:5661991-5662071 1.0000 80 chrX:433151-433231 1.0000 80 chrV:8799548-8799628 1.0000 80 chrIV:1891733-1891813 1.0000 80 chrI:8452273-8452353 1.0000 80 chrI:6331958-6332038 1.0000 80 chrX:3958425-3958505 1.0000 80 chrV:8207076-8207156 1.0000 80 chrX:11461679-11461759 1.0000 80 chrII:14627034-14627114 1.0000 80 chrV:6353341-6353421 1.0000 80 chrIV:16192884-16192964 1.0000 80 chrIV:9802835-9802915 1.0000 80 chrX:8554167-8554247 1.0000 80 chrX:12808594-12808674 1.0000 80 chrV:6302638-6302718 1.0000 80 chrIII:4187999-4188079 1.0000 80 chrX:7057520-7057600 1.0000 80 chrIV:4008524-4008604 1.0000 80 chrII:3030568-3030648 1.0000 80 chrI:1096094-1096174 1.0000 80 chrI:1564099-1564179 1.0000 80 chrX:5854606-5854686 1.0000 80 chrV:6699980-6700060 1.0000 80 chrX:14709702-14709782 1.0000 80 chrX:14069684-14069764 1.0000 80 chrI:10403941-10404021 1.0000 80 chrX:7665516-7665596 1.0000 80 chrX:13009066-13009146 1.0000 80 chrX:8004989-8005069 1.0000 80 chrIV:10329735-10329815 1.0000 80 chrIII:6074095-6074175 1.0000 80 chrX:6515442-6515522 1.0000 80 chrI:5394795-5394875 1.0000 80 chrII:11953093-11953173 1.0000 80 chrX:4809370-4809450 1.0000 80 chrV:6737044-6737124 1.0000 80 chrII:6178531-6178611 1.0000 80 chrV:20693818-20693898 1.0000 80 chrII:7404204-7404284 1.0000 80 chrV:9163225-9163305 1.0000 80 chrV:16357371-16357451 1.0000 80 chrI:3916822-3916902 1.0000 80 chrI:5782002-5782082 1.0000 80 chrII:2994684-2994764 1.0000 80 chrIII:4334960-4335040 1.0000 80 chrV:4437356-4437436 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_blmp-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/blmp-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.288 C 0.211 G 0.19 T 0.311 Background letter frequencies (from file dataset with add-one prior applied): A 0.288 C 0.211 G 0.19 T 0.311 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AGTGAAAG MEME-1 width = 8 sites = 115 llr = 924 E-value = 3.4e-092 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGTGAAAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A 812:a8a3 pos.-specific C ::1::::1 probability G 292a:2:7 matrix T ::5::::: bits 2.4 * 2.2 * 1.9 * * 1.7 * ** * Relative 1.4 * ** * Entropy 1.2 ** ***** (11.6 bits) 1.0 ** ***** 0.7 ** ***** 0.5 ** ***** 0.2 ******** 0.0 -------- Multilevel AGTGAAAG consensus A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGAAAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:4437356-4437436 30 1.47e-05 TAACCCAATA AGTGAAAG CCTTTTCTAT chrI:3916822-3916902 18 1.47e-05 ATCGGCAACA AGTGAAAG CAGCCCCCTC chrV:6737044-6737124 24 1.47e-05 CGCAATTGTA AGTGAAAG TGCGCGAGGC chrII:3030568-3030648 49 1.47e-05 TGTTTGACAA AGTGAAAG TATTCGCCGA chrI:8452273-8452353 20 1.47e-05 CGAACGGCAA AGTGAAAG TATAGAAGGA chrX:5339432-5339512 37 1.47e-05 CTCTACGGAA AGTGAAAG CTAGAACCGC chrIII:11742334-11742414 23 1.47e-05 GAGAGGGAAA AGTGAAAG GACTCCCGCC chrII:4876243-4876323 55 1.47e-05 TTTATTGAAA AGTGAAAG TTCTCGAAGG chrV:9225156-9225236 13 1.47e-05 ACAGGCAATG AGTGAAAG TAAAAAAGGA chrIII:11378597-11378677 35 1.47e-05 ACTTGATGAT AGTGAAAG TGTGAGATAT chrIV:9673343-9673423 20 1.47e-05 TAAAAAATTA AGTGAAAG TTTGCATTAT chrV:11302858-11302938 52 1.47e-05 TAGCCCAAAA AGTGAAAG TATTTGATAT chrIV:12401786-12401866 59 1.47e-05 AGGTGGTGAA AGTGAAAG TATAAAGCTG chrII:8094077-8094157 24 1.47e-05 CGACCCGTAA AGTGAAAG TAATACCCGA chrII:11161820-11161900 46 1.47e-05 TGAAGGAACA AGTGAAAG GATGGAATTT chrX:1309615-1309695 33 1.47e-05 CCGGAGAACA AGTGAAAG GAATCAGAGG chrX:12875001-12875081 11 1.47e-05 AGGGAAAAGA AGTGAAAG TGAGCTGAGA chrI:6866411-6866491 12 1.47e-05 GACGCTAATC AGTGAAAG GTGGGAGGAG chrI:3251154-3251234 39 1.47e-05 AGATTTTGAA AGTGAAAG TTTTTTGTTT chrX:7553499-7553579 42 1.47e-05 GAAATTTTTG AGTGAAAG TTGAAGAAAG chrV:12011848-12011928 30 1.47e-05 GGCTTAAGAT AGTGAAAG TGATAGAAGA chrX:13387726-13387806 56 1.47e-05 TGAAATGATG AGTGAAAG TTTTCGAAAA chrV:10602737-10602817 7 1.47e-05 GAACAT AGTGAAAG TACGATTTAT chrI:7877972-7878052 28 1.47e-05 GAAACGAATA AGTGAAAG TTGCCATGGA chrX:10228524-10228604 12 2.36e-05 GGGGAACGAG AGGGAAAG AGATCGACGT chrIV:14089892-14089972 4 2.36e-05 AGA AGGGAAAG GAAGAGATAt chrX:13146457-13146537 53 2.36e-05 TATTGTAGAA AGGGAAAG CATTTGCAAG chrI:11839697-11839777 61 2.36e-05 TGCGCGCCGG AGGGAAAG CGAAAAACGC chrII:9019871-9019951 16 2.36e-05 CAAGATTGAG AGGGAAAG TGATCGAATT chrX:8554167-8554247 62 3.72e-05 GCCGTTGGAA AGAGAAAG GAAGGGCAGA chrX:15772873-15772953 57 3.72e-05 tagaaaagaa agagaaag gcaaggtgca chrIV:5858388-5858468 29 3.72e-05 TCATAACTGA AGAGAAAG TGATGGAAGA chrX:4663124-4663204 40 3.72e-05 CAAGACGCAG AGAGAAAG AGAAAAGAAG chrII:8730440-8730520 50 3.72e-05 GAAACAAGAA AGAGAAAG AAAACAGAAG chrI:13062842-13062922 10 3.72e-05 GCCCCCGGC AGAGAAAG TGTCACCTTT chrII:5899238-5899318 66 3.72e-05 AGAGAAAATG AGAGAAAG GATGGAG chrII:7404204-7404284 8 5.66e-05 TGTCACA AGTGAGAG TAAGCTTGTT chrX:13009066-13009146 21 5.66e-05 ATTTGTAGTT AGTGAGAG TCCCGACTCA chrI:1096094-1096174 33 5.66e-05 AACACGGGAA AGTGAGAG GATTAGACGA chrII:6714036-6714116 50 5.66e-05 agagaaattg agtgagag agtagagagc chrX:16535383-16535463 42 5.66e-05 tgagggaaaa agtgagag tgatagtgaA chrV:6105605-6105685 22 5.66e-05 GAATTAGGTC AGTGAGAG GACGACTTTC chrV:8668333-8668413 60 5.66e-05 CTGTAAAATA AGTGAGAG TGGAAGTAGG chrI:10744425-10744505 9 5.66e-05 TAAGTAAG AGTGAGAG TTTTTCTAGG chrX:14581010-14581090 36 5.66e-05 AAAAACACTG GGTGAAAG TTTTCCGGTC chrX:8045305-8045385 49 5.66e-05 TAGATAAGTA GGTGAAAG TTTTCTATCA chrIV:5704108-5704188 10 5.66e-05 GCGAAAAGA GGTGAAAG TTGGGCAATG chrX:15888143-15888223 73 5.66e-05 AGCGACAAGA GGTGAAAG chrX:6027274-6027354 51 5.66e-05 GATACATGGT GGTGAAAG TGTTGTTTTC chrII:10523186-10523266 49 7.88e-05 AATCGAGGTC AGTGAAAA CACGAATGGA chrX:16555869-16555949 13 7.88e-05 GTTGTCTGAA AGTGAAAA CGATTTGGTC chrX:8882319-8882399 39 7.88e-05 GGTTACAGAG AGTGAAAA CAGGCAATCA chrII:4821986-4822066 59 7.88e-05 ATATTATGAA AGTGAAAA AGGACTTTTT chrV:1892731-1892811 38 7.88e-05 ATCGAATGAA AGTGAAAA AAATGCCTGC chrII:11162561-11162641 38 7.88e-05 AAAATGAGAG AGTGAAAA AGAAATCAAG chrI:10284502-10284582 52 7.88e-05 TAAAAGTAAA AGTGAAAA CTTAATGCTG chrIV:4641145-4641225 71 7.88e-05 CTGAATAAAA AGTGAAAA GA chrI:7316373-7316453 73 7.88e-05 TCTTTTGGGT AGTGAAAA chrI:5882110-5882190 5 7.88e-05 TCAA AGTGAAAA TGATAGGAGG chrX:3932093-3932173 20 7.88e-05 AGACAAAGGT AGTGAAAA TATAGTGAAA chrI:6372831-6372911 31 7.88e-05 CCACGAAAAA AGTGAAAA TCTGCAGGCA chrV:6699980-6700060 37 8.88e-05 TTGCGGTAAG AGCGAAAG GGCGCGGAGA chrII:13167657-13167737 40 8.88e-05 TGAAGACGCT AGCGAAAG GTGTGAGTGT chrIII:9867932-9868012 33 8.88e-05 AATCATCGAA AGCGAAAG AAGGGGAGAG chrX:5075670-5075750 46 8.88e-05 CTTCAATGAA AGCGAAAG TGGGTTCGCT chrX:3982657-3982737 49 8.88e-05 AAGGAAAAAA AGCGAAAG TTACATGTAG chrIII:4334960-4335040 29 1.01e-04 TTTTTTAAAA GGGGAAAG TGTGAGGCAG chrIV:1891733-1891813 10 1.01e-04 GGGGGAGGG AGGGAGAG TTCTCCCCCA chrX:13003316-13003396 57 1.01e-04 TGACGGTGAG GGGGAAAG GAAGGAAGGA chrV:11680932-11681012 1 1.01e-04 . AGGGAGAG TGGTCGTAAA chrII:11881192-11881272 13 1.01e-04 TTTGGTAACA GGGGAAAG GATAAGGAAA chrI:1564099-1564179 51 1.19e-04 AGGGAAATGT GGAGAAAG TGACGAAAGA chrV:6354967-6355047 4 1.19e-04 cag agagagag aCCACGACGA chrI:10281874-10281954 11 1.19e-04 GAGAGAAAAA AGAGAGAG TAGTGATCGA chrIV:5940774-5940854 45 1.19e-04 AAGAGAAGGT GGAGAAAG GCGATTGACT chrI:5210135-5210215 7 1.19e-04 AAGGAG AGAGAGAG AATCGCAAAT chrIII:6601444-6601524 36 1.19e-04 TGAAAGAAGT GGAGAAAG GAGTAATCAA chrIII:2634724-2634804 59 1.19e-04 GGGTTTCTCG GGAGAAAG TTTTCAACGG chrI:763491-763571 56 1.19e-04 GTGTGTGTGA AGAGAGAG AGTGCATACA chrI:14991804-14991884 32 1.39e-04 GTCGAGGCGC AGGGAAAA AGACAAACAG chrIII:9277990-9278070 18 1.39e-04 ATAAAAGATA AGGGAAAA AGTATAAGCC chrX:17682411-17682491 47 1.39e-04 AAATTAAGAA AGGGAAAA GAAGAGTGAA chrI:5295350-5295430 53 1.39e-04 ATTGGAAATC GGTGAGAG GAACGAACGA chrII:11246668-11246748 73 1.39e-04 CGCAATGGAA AGGGAAAA chrII:11020849-11020929 6 1.59e-04 TGTCA AGAGAAAA TGAAAAAAAG chrII:10706140-10706220 52 1.59e-04 GGGAGTGGAA AGAGAAAA GGAGTAAATC chrII:8494508-8494588 9 1.59e-04 CAGGTAAA AGAGAAAA GAGACACTAT chrV:10662145-10662225 3 1.59e-04 AC AGAGAAAA AGTGAAATCG chrIV:3600099-3600179 49 1.59e-04 CGAACAAAAA AGAGAAAA AGTTACAGTA chrIII:9300813-9300893 20 1.59e-04 TGGAGAGTTT AGAGAAAA ATCAAATTGA chrX:433151-433231 31 1.88e-04 AAAACGTGAA AGTGAGAA AATGGGAGGA chrI:9399750-9399830 20 1.88e-04 ATCGAAAATC GGTGAAAA CGAAAAGCGA chrIV:4688378-4688458 50 1.88e-04 TTCGGGAGGG GGTGAAAA GGAAAAAGTA chrX:5854606-5854686 50 2.18e-04 CGCATTAAAA AGTGAAAC GTGTCAAGTC chrI:6331958-6332038 26 2.18e-04 TAAAACACAC AGTGAAAC ACGGAACCTT chrIII:5419689-5419769 18 2.18e-04 AGGTAGAAAA AGTGAAAC GGTGGTGGTA chrIV:7977591-7977671 68 2.59e-04 AAGTTGTCAT AATGAAAG TGAAT chrIII:886841-886921 9 2.59e-04 TATGGAAG AATGAAAG CACGACACGA chrIV:9123171-9123251 30 2.65e-04 TGGCAAGAAA GGAGAGAG AAGGTAGATC chrX:12940960-12941040 31 2.83e-04 Gaaaaggaaa ggggaaaa aagtaaaaaa chrIII:6074095-6074175 72 3.20e-04 TGTCTTTGAA AGAGAGAA A chrIV:16192884-16192964 19 3.45e-04 AATAGCAACG AGAGAAAC TATTTGACAT chrIII:6359344-6359424 23 4.54e-04 TTTTTTCGAA AATGAGAG TGATGAATCG chrIV:13884094-13884174 1 4.54e-04 . GGCGAAAA TACTTTTTCT chrIV:3817403-3817483 50 4.54e-04 TATTAAGTTA GATGAAAG GAATCGAAGC chrX:8200370-8200450 24 4.54e-04 GGACATAGGA AGCGAGAA AGACCTTCAA chrV:20861222-20861302 68 4.65e-04 AGCCTTTTAA AGCGAAAC TGATT chrV:8799548-8799628 28 5.18e-04 ATAGAATATC AGGGAGAC ATAAAAAAGA chrII:9251696-9251776 73 5.18e-04 AGAGTGATTG AATGAAAA chrI:14458333-14458413 6 5.18e-04 AGGAA GGGGAAAC ATTTTGACAC chrV:6353341-6353421 12 5.42e-04 CACTACTGAA AACGAAAG GGATGCCAAA chrI:7881652-7881732 39 5.42e-04 CCCTTCCGCA AACGAAAG TGCCAATTGA chrI:10352590-10352670 40 5.87e-04 TAAGAATAGA GAGGAAAG AGGCGGAGTC chrV:2675884-2675964 5 5.87e-04 AGAA AAGGAGAG GAAGCATTGA chrII:9232664-9232744 23 6.97e-04 TCTTTTCCGA AAAGAAAA GTCTTTTTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGAAAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:4437356-4437436 1.5e-05 29_[+1]_43 chrI:3916822-3916902 1.5e-05 17_[+1]_55 chrV:6737044-6737124 1.5e-05 23_[+1]_49 chrII:3030568-3030648 1.5e-05 48_[+1]_24 chrI:8452273-8452353 1.5e-05 19_[+1]_53 chrX:5339432-5339512 1.5e-05 36_[+1]_36 chrIII:11742334-11742414 1.5e-05 22_[+1]_50 chrII:4876243-4876323 1.5e-05 54_[+1]_18 chrV:9225156-9225236 1.5e-05 12_[+1]_60 chrIII:11378597-11378677 1.5e-05 34_[+1]_38 chrIV:9673343-9673423 1.5e-05 19_[+1]_53 chrV:11302858-11302938 1.5e-05 51_[+1]_21 chrIV:12401786-12401866 1.5e-05 58_[+1]_14 chrII:8094077-8094157 1.5e-05 23_[+1]_49 chrII:11161820-11161900 1.5e-05 45_[+1]_27 chrX:1309615-1309695 1.5e-05 32_[+1]_40 chrX:12875001-12875081 1.5e-05 10_[+1]_62 chrI:6866411-6866491 1.5e-05 11_[+1]_61 chrI:3251154-3251234 1.5e-05 38_[+1]_34 chrX:7553499-7553579 1.5e-05 41_[+1]_31 chrV:12011848-12011928 1.5e-05 29_[+1]_43 chrX:13387726-13387806 1.5e-05 55_[+1]_17 chrV:10602737-10602817 1.5e-05 6_[+1]_66 chrI:7877972-7878052 1.5e-05 27_[+1]_45 chrX:10228524-10228604 2.4e-05 11_[+1]_61 chrIV:14089892-14089972 2.4e-05 3_[+1]_69 chrX:13146457-13146537 2.4e-05 52_[+1]_20 chrI:11839697-11839777 2.4e-05 60_[+1]_12 chrII:9019871-9019951 2.4e-05 15_[+1]_57 chrX:8554167-8554247 3.7e-05 61_[+1]_11 chrX:15772873-15772953 3.7e-05 56_[+1]_16 chrIV:5858388-5858468 3.7e-05 28_[+1]_44 chrX:4663124-4663204 3.7e-05 39_[+1]_33 chrII:8730440-8730520 3.7e-05 49_[+1]_23 chrI:13062842-13062922 3.7e-05 9_[+1]_63 chrII:5899238-5899318 3.7e-05 65_[+1]_7 chrII:7404204-7404284 5.7e-05 7_[+1]_65 chrX:13009066-13009146 5.7e-05 20_[+1]_52 chrI:1096094-1096174 5.7e-05 32_[+1]_40 chrII:6714036-6714116 5.7e-05 49_[+1]_23 chrX:16535383-16535463 5.7e-05 41_[+1]_31 chrV:6105605-6105685 5.7e-05 21_[+1]_51 chrV:8668333-8668413 5.7e-05 59_[+1]_13 chrI:10744425-10744505 5.7e-05 8_[+1]_64 chrX:14581010-14581090 5.7e-05 35_[+1]_37 chrX:8045305-8045385 5.7e-05 48_[+1]_24 chrIV:5704108-5704188 5.7e-05 9_[+1]_63 chrX:15888143-15888223 5.7e-05 72_[+1] chrX:6027274-6027354 5.7e-05 50_[+1]_22 chrII:10523186-10523266 7.9e-05 48_[+1]_24 chrX:16555869-16555949 7.9e-05 12_[+1]_60 chrX:8882319-8882399 7.9e-05 38_[+1]_34 chrII:4821986-4822066 7.9e-05 58_[+1]_14 chrV:1892731-1892811 7.9e-05 37_[+1]_35 chrII:11162561-11162641 7.9e-05 37_[+1]_35 chrI:10284502-10284582 7.9e-05 51_[+1]_21 chrIV:4641145-4641225 7.9e-05 70_[+1]_2 chrI:7316373-7316453 7.9e-05 72_[+1] chrI:5882110-5882190 7.9e-05 4_[+1]_68 chrX:3932093-3932173 7.9e-05 19_[+1]_53 chrI:6372831-6372911 7.9e-05 30_[+1]_42 chrV:6699980-6700060 8.9e-05 36_[+1]_36 chrII:13167657-13167737 8.9e-05 39_[+1]_33 chrIII:9867932-9868012 8.9e-05 32_[+1]_40 chrX:5075670-5075750 8.9e-05 45_[+1]_27 chrX:3982657-3982737 8.9e-05 48_[+1]_24 chrIII:4334960-4335040 0.0001 28_[+1]_44 chrIV:1891733-1891813 0.0001 9_[+1]_63 chrX:13003316-13003396 0.0001 56_[+1]_16 chrV:11680932-11681012 0.0001 [+1]_72 chrII:11881192-11881272 0.0001 12_[+1]_60 chrI:1564099-1564179 0.00012 50_[+1]_22 chrV:6354967-6355047 0.00012 3_[+1]_69 chrI:10281874-10281954 0.00012 10_[+1]_62 chrIV:5940774-5940854 0.00012 44_[+1]_28 chrI:5210135-5210215 0.00012 6_[+1]_66 chrIII:6601444-6601524 0.00012 35_[+1]_37 chrIII:2634724-2634804 0.00012 58_[+1]_14 chrI:763491-763571 0.00012 55_[+1]_17 chrI:14991804-14991884 0.00014 31_[+1]_41 chrIII:9277990-9278070 0.00014 17_[+1]_55 chrX:17682411-17682491 0.00014 46_[+1]_26 chrI:5295350-5295430 0.00014 52_[+1]_20 chrII:11246668-11246748 0.00014 72_[+1] chrII:11020849-11020929 0.00016 5_[+1]_67 chrII:10706140-10706220 0.00016 51_[+1]_21 chrII:8494508-8494588 0.00016 8_[+1]_64 chrV:10662145-10662225 0.00016 2_[+1]_70 chrIV:3600099-3600179 0.00016 48_[+1]_24 chrIII:9300813-9300893 0.00016 19_[+1]_53 chrX:433151-433231 0.00019 30_[+1]_42 chrI:9399750-9399830 0.00019 19_[+1]_53 chrIV:4688378-4688458 0.00019 49_[+1]_23 chrX:5854606-5854686 0.00022 49_[+1]_23 chrI:6331958-6332038 0.00022 25_[+1]_47 chrIII:5419689-5419769 0.00022 17_[+1]_55 chrIV:7977591-7977671 0.00026 67_[+1]_5 chrIII:886841-886921 0.00026 8_[+1]_64 chrIV:9123171-9123251 0.00027 29_[+1]_43 chrX:12940960-12941040 0.00028 30_[+1]_42 chrIII:6074095-6074175 0.00032 71_[+1]_1 chrIV:16192884-16192964 0.00034 18_[+1]_54 chrIII:6359344-6359424 0.00045 22_[+1]_50 chrIV:13884094-13884174 0.00045 [+1]_72 chrIV:3817403-3817483 0.00045 49_[+1]_23 chrX:8200370-8200450 0.00045 23_[+1]_49 chrV:20861222-20861302 0.00047 67_[+1]_5 chrV:8799548-8799628 0.00052 27_[+1]_45 chrII:9251696-9251776 0.00052 72_[+1] chrI:14458333-14458413 0.00052 5_[+1]_67 chrV:6353341-6353421 0.00054 11_[+1]_61 chrI:7881652-7881732 0.00054 38_[+1]_34 chrI:10352590-10352670 0.00059 39_[+1]_33 chrV:2675884-2675964 0.00059 4_[+1]_68 chrII:9232664-9232744 0.0007 22_[+1]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGAAAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGTGAAAG width=8 seqs=115 chrV:4437356-4437436 ( 30) AGTGAAAG 1 chrI:3916822-3916902 ( 18) AGTGAAAG 1 chrV:6737044-6737124 ( 24) AGTGAAAG 1 chrII:3030568-3030648 ( 49) AGTGAAAG 1 chrI:8452273-8452353 ( 20) AGTGAAAG 1 chrX:5339432-5339512 ( 37) AGTGAAAG 1 chrIII:11742334-11742414 ( 23) AGTGAAAG 1 chrII:4876243-4876323 ( 55) AGTGAAAG 1 chrV:9225156-9225236 ( 13) AGTGAAAG 1 chrIII:11378597-11378677 ( 35) AGTGAAAG 1 chrIV:9673343-9673423 ( 20) AGTGAAAG 1 chrV:11302858-11302938 ( 52) AGTGAAAG 1 chrIV:12401786-12401866 ( 59) AGTGAAAG 1 chrII:8094077-8094157 ( 24) AGTGAAAG 1 chrII:11161820-11161900 ( 46) AGTGAAAG 1 chrX:1309615-1309695 ( 33) AGTGAAAG 1 chrX:12875001-12875081 ( 11) AGTGAAAG 1 chrI:6866411-6866491 ( 12) AGTGAAAG 1 chrI:3251154-3251234 ( 39) AGTGAAAG 1 chrX:7553499-7553579 ( 42) AGTGAAAG 1 chrV:12011848-12011928 ( 30) AGTGAAAG 1 chrX:13387726-13387806 ( 56) AGTGAAAG 1 chrV:10602737-10602817 ( 7) AGTGAAAG 1 chrI:7877972-7878052 ( 28) AGTGAAAG 1 chrX:10228524-10228604 ( 12) AGGGAAAG 1 chrIV:14089892-14089972 ( 4) AGGGAAAG 1 chrX:13146457-13146537 ( 53) AGGGAAAG 1 chrI:11839697-11839777 ( 61) AGGGAAAG 1 chrII:9019871-9019951 ( 16) AGGGAAAG 1 chrX:8554167-8554247 ( 62) AGAGAAAG 1 chrX:15772873-15772953 ( 57) AGAGAAAG 1 chrIV:5858388-5858468 ( 29) AGAGAAAG 1 chrX:4663124-4663204 ( 40) AGAGAAAG 1 chrII:8730440-8730520 ( 50) AGAGAAAG 1 chrI:13062842-13062922 ( 10) AGAGAAAG 1 chrII:5899238-5899318 ( 66) AGAGAAAG 1 chrII:7404204-7404284 ( 8) AGTGAGAG 1 chrX:13009066-13009146 ( 21) AGTGAGAG 1 chrI:1096094-1096174 ( 33) AGTGAGAG 1 chrII:6714036-6714116 ( 50) AGTGAGAG 1 chrX:16535383-16535463 ( 42) AGTGAGAG 1 chrV:6105605-6105685 ( 22) AGTGAGAG 1 chrV:8668333-8668413 ( 60) AGTGAGAG 1 chrI:10744425-10744505 ( 9) AGTGAGAG 1 chrX:14581010-14581090 ( 36) GGTGAAAG 1 chrX:8045305-8045385 ( 49) GGTGAAAG 1 chrIV:5704108-5704188 ( 10) GGTGAAAG 1 chrX:15888143-15888223 ( 73) GGTGAAAG 1 chrX:6027274-6027354 ( 51) GGTGAAAG 1 chrII:10523186-10523266 ( 49) AGTGAAAA 1 chrX:16555869-16555949 ( 13) AGTGAAAA 1 chrX:8882319-8882399 ( 39) AGTGAAAA 1 chrII:4821986-4822066 ( 59) AGTGAAAA 1 chrV:1892731-1892811 ( 38) AGTGAAAA 1 chrII:11162561-11162641 ( 38) AGTGAAAA 1 chrI:10284502-10284582 ( 52) AGTGAAAA 1 chrIV:4641145-4641225 ( 71) AGTGAAAA 1 chrI:7316373-7316453 ( 73) AGTGAAAA 1 chrI:5882110-5882190 ( 5) AGTGAAAA 1 chrX:3932093-3932173 ( 20) AGTGAAAA 1 chrI:6372831-6372911 ( 31) AGTGAAAA 1 chrV:6699980-6700060 ( 37) AGCGAAAG 1 chrII:13167657-13167737 ( 40) AGCGAAAG 1 chrIII:9867932-9868012 ( 33) AGCGAAAG 1 chrX:5075670-5075750 ( 46) AGCGAAAG 1 chrX:3982657-3982737 ( 49) AGCGAAAG 1 chrIII:4334960-4335040 ( 29) GGGGAAAG 1 chrIV:1891733-1891813 ( 10) AGGGAGAG 1 chrX:13003316-13003396 ( 57) GGGGAAAG 1 chrV:11680932-11681012 ( 1) AGGGAGAG 1 chrII:11881192-11881272 ( 13) GGGGAAAG 1 chrI:1564099-1564179 ( 51) GGAGAAAG 1 chrV:6354967-6355047 ( 4) AGAGAGAG 1 chrI:10281874-10281954 ( 11) AGAGAGAG 1 chrIV:5940774-5940854 ( 45) GGAGAAAG 1 chrI:5210135-5210215 ( 7) AGAGAGAG 1 chrIII:6601444-6601524 ( 36) GGAGAAAG 1 chrIII:2634724-2634804 ( 59) GGAGAAAG 1 chrI:763491-763571 ( 56) AGAGAGAG 1 chrI:14991804-14991884 ( 32) AGGGAAAA 1 chrIII:9277990-9278070 ( 18) AGGGAAAA 1 chrX:17682411-17682491 ( 47) AGGGAAAA 1 chrI:5295350-5295430 ( 53) GGTGAGAG 1 chrII:11246668-11246748 ( 73) AGGGAAAA 1 chrII:11020849-11020929 ( 6) AGAGAAAA 1 chrII:10706140-10706220 ( 52) AGAGAAAA 1 chrII:8494508-8494588 ( 9) AGAGAAAA 1 chrV:10662145-10662225 ( 3) AGAGAAAA 1 chrIV:3600099-3600179 ( 49) AGAGAAAA 1 chrIII:9300813-9300893 ( 20) AGAGAAAA 1 chrX:433151-433231 ( 31) AGTGAGAA 1 chrI:9399750-9399830 ( 20) GGTGAAAA 1 chrIV:4688378-4688458 ( 50) GGTGAAAA 1 chrX:5854606-5854686 ( 50) AGTGAAAC 1 chrI:6331958-6332038 ( 26) AGTGAAAC 1 chrIII:5419689-5419769 ( 18) AGTGAAAC 1 chrIV:7977591-7977671 ( 68) AATGAAAG 1 chrIII:886841-886921 ( 9) AATGAAAG 1 chrIV:9123171-9123251 ( 30) GGAGAGAG 1 chrX:12940960-12941040 ( 31) GGGGAAAA 1 chrIII:6074095-6074175 ( 72) AGAGAGAA 1 chrIV:16192884-16192964 ( 19) AGAGAAAC 1 chrIII:6359344-6359424 ( 23) AATGAGAG 1 chrIV:13884094-13884174 ( 1) GGCGAAAA 1 chrIV:3817403-3817483 ( 50) GATGAAAG 1 chrX:8200370-8200450 ( 24) AGCGAGAA 1 chrV:20861222-20861302 ( 68) AGCGAAAC 1 chrV:8799548-8799628 ( 28) AGGGAGAC 1 chrII:9251696-9251776 ( 73) AATGAAAA 1 chrI:14458333-14458413 ( 6) GGGGAAAC 1 chrV:6353341-6353421 ( 12) AACGAAAG 1 chrI:7881652-7881732 ( 39) AACGAAAG 1 chrI:10352590-10352670 ( 40) GAGGAAAG 1 chrV:2675884-2675964 ( 5) AAGGAGAG 1 chrII:9232664-9232744 ( 23) AAAGAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGAAAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.53308 E= 3.4e-092 150 -1349 -6 -1349 -173 -1349 227 -1349 -41 -128 -20 77 -1349 -1349 240 -1349 179 -1349 -1349 -1349 149 -1349 1 -1349 179 -1349 -1349 -1349 -10 -179 182 -1349 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGAAAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 115 E= 3.4e-092 0.817391 0.000000 0.182609 0.000000 0.086957 0.000000 0.913043 0.000000 0.217391 0.086957 0.165217 0.530435 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.808696 0.000000 0.191304 0.000000 1.000000 0.000000 0.000000 0.000000 0.269565 0.060870 0.669565 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGAAAG MEME-1 regular expression -------------------------------------------------------------------------------- AG[TA]GAAA[GA] -------------------------------------------------------------------------------- Time 5.00 secs. ******************************************************************************** ******************************************************************************** MOTIF TCACTTTC MEME-2 width = 8 sites = 122 llr = 956 E-value = 4.1e-092 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCACTTTC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::7::::: pos.-specific C :a19:::7 probability G ::1::::: matrix T 9:11aaa3 bits 2.4 2.2 * 1.9 * 1.7 * * Relative 1.4 * **** Entropy 1.2 ** ***** (11.3 bits) 1.0 ** ***** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCACTTTC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACTTTC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:4809370-4809450 55 2.53e-05 GAGATCAGTT TCACTTTC CATTTGATTA chrII:11953093-11953173 29 2.53e-05 AGAATGCCAA TCACTTTC TCTCTGCCCT chrIII:6074095-6074175 24 2.53e-05 ttttctcatt tCACTTTC TATTTGTTTC chrX:7057520-7057600 27 2.53e-05 TCGGCTTTTC TCACTTTC AATTATGCCA chrIII:4187999-4188079 60 2.53e-05 GTCGTCTTCA TCACTTTC TCACCTTGTT chrIV:9802835-9802915 33 2.53e-05 ACTTTCACCT TCACTTTC ACTCGAGTTC chrIV:16192884-16192964 38 2.53e-05 ATTTGACATT TCACTTTC CAAGGTCAGC chrII:14627034-14627114 15 2.53e-05 CAACATCACT TCACTTTC CTTCAGCTGT chrX:3958425-3958505 13 2.53e-05 CTATCATTCA TCACTTTC GTTTCGCTTT chrV:9704038-9704118 22 2.53e-05 TTTGATGTTT TCACTTTC TCCTCATCTC chrX:10317739-10317819 66 2.53e-05 CTTTTTCTCG TCACTTTC ACATTTA chrX:7210626-7210706 70 2.53e-05 AGATTCTTTT TCACTTTC TCT chrX:3832637-3832717 33 2.53e-05 AATATCACTC TCACTTTC TCACGACTTG chrX:2212854-2212934 59 2.53e-05 TGCCCCTTCT TCACTTTC TCCAAATCAA chrIV:13884094-13884174 52 2.53e-05 TTCACTTCTC TCACTTTC AATGAACACT chrI:3283021-3283101 30 2.53e-05 ATCAAGATCA TCACTTTC CATTACGATA chrII:8494508-8494588 45 2.53e-05 ATCTAAATGG TCACTTTC ACTTACACTT chrV:14495605-14495685 39 2.53e-05 ATTCCTCTCT TCACTTTC TCCCTTTCCG chrII:8380327-8380407 9 2.53e-05 TTCGATTT TCACTTTC GCTGTTTTTC chrV:13963471-13963551 60 2.53e-05 TTCCTTTTCC TCACTTTC TCTCATCTAT chrI:8680294-8680374 51 2.53e-05 GACCCACTTT TCACTTTC ACATTGTCAT chrIII:4391476-4391556 35 2.53e-05 TCTCATCTCG TCACTTTC GCTCCTTCCG chrIV:7440365-7440445 56 2.53e-05 TCGCTACATA TCACTTTC TTTTAATATC chrX:8200370-8200450 49 2.53e-05 CAAATATGGT TCACTTTC ACTATACGAC chrIII:11241898-11241978 67 2.53e-05 ACTGCAACTT TCACTTTC TCTCCC chrIV:7836667-7836747 26 2.53e-05 AACAAGTGAA TCACTTTC ATGAAAAACC chrX:12875001-12875081 40 2.53e-05 ACGTCTACAT TCACTTTC CATTTTCTAA chrIII:8555861-8555941 12 2.53e-05 TCTCGTCCAG TCACTTTC CATTTCATTT chrI:6341127-6341207 4 2.53e-05 ATT TCACTTTC CATTGTTCCT chrI:10352590-10352670 22 2.53e-05 GTCTTGAACT TCACTTTC TAAGAATAGA chrX:17686106-17686186 41 2.53e-05 TAACAGACTA TCACTTTC ACTGCCTTGA chrX:9764065-9764145 60 2.53e-05 acgagaaTTC TCACTTTC CATTACAAAT chrII:15260719-15260799 72 2.53e-05 CGTTGAACTA TCACTTTC A chrII:8199934-8200014 68 2.53e-05 CTTCCCCTTG TCACTTTC ATTGG chrV:6744938-6745018 40 2.53e-05 ATCATCCAGT TCACTTTC GCTTATTAGC chrI:2167906-2167986 44 2.53e-05 TTGATAGCAG TCACTTTC GATTTCCAAC chrIII:13695744-13695824 57 2.53e-05 AGCAATTTCT TCACTTTC CATCTCCCTC chrX:6027274-6027354 7 2.53e-05 ttcttc tCACTTTC CATTCTATTC chrI:14967035-14967115 24 2.53e-05 Atcacttttc tcactttc acttcacttt chrIII:4334960-4335040 15 6.26e-05 CCATAACATT TCACTTTT TTAAAAGGGG chrV:20693818-20693898 58 6.26e-05 AAAACGTGTT TCACTTTT CTTTTGCATC chrX:6515442-6515522 40 6.26e-05 TTCACTCATT TCACTTTT CTCGTGACGC chrX:11461679-11461759 69 6.26e-05 TGTTCACCTT TCACTTTT TGCG chrX:3785546-3785626 58 6.26e-05 attgtgtttt tcactttt attttagttt chrIII:13381865-13381945 24 6.26e-05 TTCATAGTTT TCACTTTT TTTCAAAAAG chrII:2435733-2435813 23 6.26e-05 GCCACGATTT TCACTTTT TTCTGCGTGG chrIII:568942-569022 44 6.26e-05 TCTTACCCAT TCACTTTT CATTTCCCGT chrV:10602181-10602261 23 6.26e-05 tttatcacat tcactttt tatttttctc chrII:1200157-1200237 40 6.26e-05 TACTTTTTTT TCACTTTT TCCCGCGACC chrV:6349767-6349847 20 6.26e-05 TTTCGAAAAT TCACTTTT TCACCGTCCT chrI:7527147-7527227 64 6.26e-05 TGATAAACTT TCACTTTT TCTGTTCAT chrX:15273084-15273164 26 6.26e-05 GAAAAGCCTT TCACTTTT CATGACCTTT chrX:13726449-13726529 52 6.26e-05 TTTTCTGTTT TCACTTTT TCAATCACAG chrX:12679720-12679800 65 6.26e-05 CGTAGTCCTA TCACTTTT CCTTTTCA chrV:5386257-5386337 24 6.26e-05 CGTCTTGTTT TCACTTTT CGGAACTTTT chrX:16647385-16647465 28 6.26e-05 TTGCTTTTTT TCACTTTT TTCCGCCCGA chrI:5782002-5782082 73 7.93e-05 CATTCTTTTT TCGCTTTC chrI:9427083-9427163 18 7.93e-05 TCAAAAACTT TCGCTTTC AGTCGTCCAA chrII:11020849-11020929 33 7.93e-05 GAAAACCTTT TCGCTTTC TGCCGAGCCA chrV:11680932-11681012 23 7.93e-05 CGTAAAAAGT TCGCTTTC TCCTCGTTTT chrX:5071160-5071240 67 7.93e-05 CAAACCATTT TCGCTTTC ATTCAT chrII:7496074-7496154 35 7.93e-05 ATGTCAACTT TCGCTTTC ATTGGTCACT chrI:7316373-7316453 42 7.93e-05 ATGTCACCTT TCGCTTTC CTATATGATA chrX:4875446-4875526 29 7.93e-05 tcttttccac tcgctttc atttctcctt chrX:16631979-16632059 64 7.93e-05 tctcctATTT TCGCTTTC AGATATTGT chrX:13146457-13146537 4 9.79e-05 TTT TCCCTTTC TACAGACGGA chrII:2977805-2977885 2 9.79e-05 C TCCCTTTC TGCCCCCTAA chrX:16534010-16534090 49 9.79e-05 CTTTCCCTTT TCCCTTTC ACTTCCTTAC chrI:6868278-6868358 60 9.79e-05 ACGCAGCTTT TCCCTTTC AATTCACTCA chrIV:4008524-4008604 60 1.62e-04 TAATTTTCCC TCATTTTC ACTAGTAGTT chrV:6353341-6353421 41 1.62e-04 CTTTCACCAA TCATTTTC TACCGTCCAC chrI:5661991-5662071 22 1.62e-04 TCCTTCCCAT TCTCTTTC TACTTTCGTA chrV:6105605-6105685 38 1.62e-04 AGGACGACTT TCATTTTC GAATTTCATA chrIV:14089892-14089972 35 1.62e-04 tctctctctc tctctttc tTTTCCCCTT chrII:9251696-9251776 35 1.62e-04 GTATGTCAGT TCATTTTC GTTGTGAAAG chrX:16552696-16552776 5 1.62e-04 CTTC TCATTTTC AAGACTTTGC chrIV:11718812-11718892 43 1.62e-04 TTGTCTCTTG TCATTTTC AATGACCAAC chrII:8750200-8750280 57 1.62e-04 CTAGCCACTC TCTCTTTC TCGTATCGAA chrII:11246668-11246748 30 1.62e-04 ATTTATCGTC TCATTTTC TTTTTCCGAA chrIII:3959362-3959442 49 1.62e-04 tatctctata tctctttc tctcttctca chrII:4734627-4734707 5 1.62e-04 ATTC TCTCTTTC TAAGTTTCGT chrIV:1891733-1891813 25 2.04e-04 GAGTTCTCCC CCACTTTC ACCCCGTAAC chrIII:3161768-3161848 11 2.04e-04 GGCCATCTAA CCACTTTC TCTTACCCCC chrIV:11937232-11937312 11 2.04e-04 GTTTTTTTCT CCACTTTC ACTTCAAAAC chrX:11665782-11665862 58 2.04e-04 CGGAAATCTT CCACTTTC GTTTACGTCA chrIII:8579546-8579626 19 2.04e-04 tcttaaactt tcgctttT GCGGGTGCCC chrV:16357371-16357451 20 2.66e-04 CCATTTACTT TCACTCTC TTCTTATCAT chrI:10409017-10409097 22 2.66e-04 TCACCAACTT TCCCTTTT TGCTCTTCTT chrIV:2323153-2323233 5 2.66e-04 AAAT TCCCTTTT TTTTCCTTTT chrX:8882319-8882399 63 2.66e-04 ATCATGGTGG TCActctc tctctctctc chrIII:11666972-11667052 68 2.66e-04 TGTTCTCTAT TCACCTTC ACTTG chrII:6989668-6989748 31 2.66e-04 ATTCACTCAC TCACCTTC TCCCTCCTTT chrII:1241495-1241575 45 2.66e-04 CGGGCGGATT TCCCTTTT TACACTTTCG chrI:6869094-6869174 30 2.66e-04 TTCACCCAAT TCCCTTTT TCTGTCTAGC chrI:763491-763571 36 2.66e-04 AGGGCGCTTT TCCCTTTT TCGTGTGTGT chrI:10405035-10405115 59 2.66e-04 CGAAAATCTT TCCCTTTT TCTTGGATCT chrX:12677259-12677339 61 2.66e-04 CATTGCGATT TCCCTTTT TTGCGCCCTT chrX:5150568-5150648 34 2.89e-04 CTCCTCTTGA ACACTTTC GGTTTTTCCT chrIV:10816154-10816234 51 2.89e-04 AAGTAACTAG ACACTTTC ACTGACCAAC chrV:10602737-10602817 36 2.89e-04 GTTTAATGAT ACACTTTC TCTTTTTTTT chrV:8207076-8207156 3 3.85e-04 TT TCATTTTT CTCTCAATAT chrIV:9123171-9123251 46 3.85e-04 AGAAGGTAGA TCATTTTT TATTGAGAAG chrI:9717519-9717599 37 3.85e-04 TTTTACTTTC TCTCTTTT CTTTTCAAAA chrX:16629923-16630003 24 3.85e-04 TCTAGCGCTT TCATTTTT TCGCAACTTT chrX:16995330-16995410 59 3.85e-04 TGTCACTCCA TCATTTTT TTTTGATTTC chrI:6167588-6167668 20 3.85e-04 ATCAAAACTT TCTCTTTT CAATCGCAAC chrIII:6359344-6359424 38 4.09e-04 GAGTGATGAA TCGTTTTC GGTGTCGGCA chrII:8749273-8749353 43 4.09e-04 CCGAAAACTC TCGTTTTC TCCAGTTGCC chrX:1309615-1309695 3 4.09e-04 TC TCGTTTTC CGAGAAAGGG chrIV:10350299-10350379 6 4.67e-04 ACTCT TCAATTTC TCAACTTTCG chrV:14633466-14633546 43 4.67e-04 CCAAAAACTT TCAATTTC ATTTTGGCGG chrIV:4688378-4688458 13 4.67e-04 AGAAACACTT TGACTTTC ACCCCAAAGA chrV:1892731-1892811 63 4.67e-04 TGCGTTTCTC TCAATTTC TCTCGATTTT chrV:13259070-13259150 7 4.67e-04 TCGTGT TGACTTTC TCTACACATA chrX:14069684-14069764 41 5.19e-04 TAAACGATCG CCACTTTT TCTAGCTTTC chrIII:8709893-8709973 32 5.81e-04 CCCCATCCTT TCACTCTT CTCACGTCTC chrI:13062842-13062922 20 5.81e-04 AGAGAAAGTG TCACCTTT TCTCTCAAAA chrII:6178531-6178611 6 6.51e-04 CTTTC TCGCCTTC AGAACTAGTT chrV:11741226-11741306 64 6.51e-04 CCTGCGCAAC ACACTTTT TCTTCTCGG chrV:13406645-13406725 27 6.51e-04 TGTCCAAAGA ACACTTTT ACTTCTTTAA chrII:4876243-4876323 36 6.92e-04 TTTTGTACTT TCCCTCTC ATTTATTGAA chrIII:2873565-2873645 11 7.49e-04 tcttttttca tctttttc ttgtttcttc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACTTTC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:4809370-4809450 2.5e-05 54_[+2]_18 chrII:11953093-11953173 2.5e-05 28_[+2]_44 chrIII:6074095-6074175 2.5e-05 23_[+2]_49 chrX:7057520-7057600 2.5e-05 26_[+2]_46 chrIII:4187999-4188079 2.5e-05 59_[+2]_13 chrIV:9802835-9802915 2.5e-05 32_[+2]_40 chrIV:16192884-16192964 2.5e-05 37_[+2]_35 chrII:14627034-14627114 2.5e-05 14_[+2]_58 chrX:3958425-3958505 2.5e-05 12_[+2]_60 chrV:9704038-9704118 2.5e-05 21_[+2]_51 chrX:10317739-10317819 2.5e-05 65_[+2]_7 chrX:7210626-7210706 2.5e-05 69_[+2]_3 chrX:3832637-3832717 2.5e-05 32_[+2]_40 chrX:2212854-2212934 2.5e-05 58_[+2]_14 chrIV:13884094-13884174 2.5e-05 51_[+2]_21 chrI:3283021-3283101 2.5e-05 29_[+2]_43 chrII:8494508-8494588 2.5e-05 44_[+2]_28 chrV:14495605-14495685 2.5e-05 38_[+2]_34 chrII:8380327-8380407 2.5e-05 8_[+2]_64 chrV:13963471-13963551 2.5e-05 59_[+2]_13 chrI:8680294-8680374 2.5e-05 50_[+2]_22 chrIII:4391476-4391556 2.5e-05 34_[+2]_38 chrIV:7440365-7440445 2.5e-05 55_[+2]_17 chrX:8200370-8200450 2.5e-05 48_[+2]_24 chrIII:11241898-11241978 2.5e-05 66_[+2]_6 chrIV:7836667-7836747 2.5e-05 25_[+2]_47 chrX:12875001-12875081 2.5e-05 39_[+2]_33 chrIII:8555861-8555941 2.5e-05 11_[+2]_61 chrI:6341127-6341207 2.5e-05 3_[+2]_69 chrI:10352590-10352670 2.5e-05 21_[+2]_51 chrX:17686106-17686186 2.5e-05 40_[+2]_32 chrX:9764065-9764145 2.5e-05 59_[+2]_13 chrII:15260719-15260799 2.5e-05 71_[+2]_1 chrII:8199934-8200014 2.5e-05 67_[+2]_5 chrV:6744938-6745018 2.5e-05 39_[+2]_33 chrI:2167906-2167986 2.5e-05 43_[+2]_29 chrIII:13695744-13695824 2.5e-05 56_[+2]_16 chrX:6027274-6027354 2.5e-05 6_[+2]_66 chrI:14967035-14967115 2.5e-05 23_[+2]_49 chrIII:4334960-4335040 6.3e-05 14_[+2]_58 chrV:20693818-20693898 6.3e-05 57_[+2]_15 chrX:6515442-6515522 6.3e-05 39_[+2]_33 chrX:11461679-11461759 6.3e-05 68_[+2]_4 chrX:3785546-3785626 6.3e-05 57_[+2]_15 chrIII:13381865-13381945 6.3e-05 23_[+2]_49 chrII:2435733-2435813 6.3e-05 22_[+2]_50 chrIII:568942-569022 6.3e-05 43_[+2]_29 chrV:10602181-10602261 6.3e-05 22_[+2]_50 chrII:1200157-1200237 6.3e-05 39_[+2]_33 chrV:6349767-6349847 6.3e-05 19_[+2]_53 chrI:7527147-7527227 6.3e-05 63_[+2]_9 chrX:15273084-15273164 6.3e-05 25_[+2]_47 chrX:13726449-13726529 6.3e-05 51_[+2]_21 chrX:12679720-12679800 6.3e-05 64_[+2]_8 chrV:5386257-5386337 6.3e-05 23_[+2]_49 chrX:16647385-16647465 6.3e-05 27_[+2]_45 chrI:5782002-5782082 7.9e-05 72_[+2] chrI:9427083-9427163 7.9e-05 17_[+2]_55 chrII:11020849-11020929 7.9e-05 32_[+2]_40 chrV:11680932-11681012 7.9e-05 22_[+2]_50 chrX:5071160-5071240 7.9e-05 66_[+2]_6 chrII:7496074-7496154 7.9e-05 34_[+2]_38 chrI:7316373-7316453 7.9e-05 41_[+2]_31 chrX:4875446-4875526 7.9e-05 28_[+2]_44 chrX:16631979-16632059 7.9e-05 63_[+2]_9 chrX:13146457-13146537 9.8e-05 3_[+2]_69 chrII:2977805-2977885 9.8e-05 1_[+2]_71 chrX:16534010-16534090 9.8e-05 48_[+2]_24 chrI:6868278-6868358 9.8e-05 59_[+2]_13 chrIV:4008524-4008604 0.00016 59_[+2]_13 chrV:6353341-6353421 0.00016 40_[+2]_32 chrI:5661991-5662071 0.00016 21_[+2]_51 chrV:6105605-6105685 0.00016 37_[+2]_35 chrIV:14089892-14089972 0.00016 34_[+2]_38 chrII:9251696-9251776 0.00016 34_[+2]_38 chrX:16552696-16552776 0.00016 4_[+2]_68 chrIV:11718812-11718892 0.00016 42_[+2]_30 chrII:8750200-8750280 0.00016 56_[+2]_16 chrII:11246668-11246748 0.00016 29_[+2]_43 chrIII:3959362-3959442 0.00016 48_[+2]_24 chrII:4734627-4734707 0.00016 4_[+2]_68 chrIV:1891733-1891813 0.0002 24_[+2]_48 chrIII:3161768-3161848 0.0002 10_[+2]_62 chrIV:11937232-11937312 0.0002 10_[+2]_62 chrX:11665782-11665862 0.0002 57_[+2]_15 chrIII:8579546-8579626 0.0002 18_[+2]_54 chrV:16357371-16357451 0.00027 19_[+2]_53 chrI:10409017-10409097 0.00027 21_[+2]_51 chrIV:2323153-2323233 0.00027 4_[+2]_68 chrX:8882319-8882399 0.00027 62_[+2]_10 chrIII:11666972-11667052 0.00027 67_[+2]_5 chrII:6989668-6989748 0.00027 30_[+2]_42 chrII:1241495-1241575 0.00027 44_[+2]_28 chrI:6869094-6869174 0.00027 29_[+2]_43 chrI:763491-763571 0.00027 35_[+2]_37 chrI:10405035-10405115 0.00027 58_[+2]_14 chrX:12677259-12677339 0.00027 60_[+2]_12 chrX:5150568-5150648 0.00029 33_[+2]_39 chrIV:10816154-10816234 0.00029 50_[+2]_22 chrV:10602737-10602817 0.00029 35_[+2]_37 chrV:8207076-8207156 0.00038 2_[+2]_70 chrIV:9123171-9123251 0.00038 45_[+2]_27 chrI:9717519-9717599 0.00038 36_[+2]_36 chrX:16629923-16630003 0.00038 23_[+2]_49 chrX:16995330-16995410 0.00038 58_[+2]_14 chrI:6167588-6167668 0.00038 19_[+2]_53 chrIII:6359344-6359424 0.00041 37_[+2]_35 chrII:8749273-8749353 0.00041 42_[+2]_30 chrX:1309615-1309695 0.00041 2_[+2]_70 chrIV:10350299-10350379 0.00047 5_[+2]_67 chrV:14633466-14633546 0.00047 42_[+2]_30 chrIV:4688378-4688458 0.00047 12_[+2]_60 chrV:1892731-1892811 0.00047 62_[+2]_10 chrV:13259070-13259150 0.00047 6_[+2]_66 chrX:14069684-14069764 0.00052 40_[+2]_32 chrIII:8709893-8709973 0.00058 31_[+2]_41 chrI:13062842-13062922 0.00058 19_[+2]_53 chrII:6178531-6178611 0.00065 5_[+2]_67 chrV:11741226-11741306 0.00065 63_[+2]_9 chrV:13406645-13406725 0.00065 26_[+2]_46 chrII:4876243-4876323 0.00069 35_[+2]_37 chrIII:2873565-2873645 0.00075 10_[+2]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACTTTC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCACTTTC width=8 seqs=122 chrX:4809370-4809450 ( 55) TCACTTTC 1 chrII:11953093-11953173 ( 29) TCACTTTC 1 chrIII:6074095-6074175 ( 24) TCACTTTC 1 chrX:7057520-7057600 ( 27) TCACTTTC 1 chrIII:4187999-4188079 ( 60) TCACTTTC 1 chrIV:9802835-9802915 ( 33) TCACTTTC 1 chrIV:16192884-16192964 ( 38) TCACTTTC 1 chrII:14627034-14627114 ( 15) TCACTTTC 1 chrX:3958425-3958505 ( 13) TCACTTTC 1 chrV:9704038-9704118 ( 22) TCACTTTC 1 chrX:10317739-10317819 ( 66) TCACTTTC 1 chrX:7210626-7210706 ( 70) TCACTTTC 1 chrX:3832637-3832717 ( 33) TCACTTTC 1 chrX:2212854-2212934 ( 59) TCACTTTC 1 chrIV:13884094-13884174 ( 52) TCACTTTC 1 chrI:3283021-3283101 ( 30) TCACTTTC 1 chrII:8494508-8494588 ( 45) TCACTTTC 1 chrV:14495605-14495685 ( 39) TCACTTTC 1 chrII:8380327-8380407 ( 9) TCACTTTC 1 chrV:13963471-13963551 ( 60) TCACTTTC 1 chrI:8680294-8680374 ( 51) TCACTTTC 1 chrIII:4391476-4391556 ( 35) TCACTTTC 1 chrIV:7440365-7440445 ( 56) TCACTTTC 1 chrX:8200370-8200450 ( 49) TCACTTTC 1 chrIII:11241898-11241978 ( 67) TCACTTTC 1 chrIV:7836667-7836747 ( 26) TCACTTTC 1 chrX:12875001-12875081 ( 40) TCACTTTC 1 chrIII:8555861-8555941 ( 12) TCACTTTC 1 chrI:6341127-6341207 ( 4) TCACTTTC 1 chrI:10352590-10352670 ( 22) TCACTTTC 1 chrX:17686106-17686186 ( 41) TCACTTTC 1 chrX:9764065-9764145 ( 60) TCACTTTC 1 chrII:15260719-15260799 ( 72) TCACTTTC 1 chrII:8199934-8200014 ( 68) TCACTTTC 1 chrV:6744938-6745018 ( 40) TCACTTTC 1 chrI:2167906-2167986 ( 44) TCACTTTC 1 chrIII:13695744-13695824 ( 57) TCACTTTC 1 chrX:6027274-6027354 ( 7) TCACTTTC 1 chrI:14967035-14967115 ( 24) TCACTTTC 1 chrIII:4334960-4335040 ( 15) TCACTTTT 1 chrV:20693818-20693898 ( 58) TCACTTTT 1 chrX:6515442-6515522 ( 40) TCACTTTT 1 chrX:11461679-11461759 ( 69) TCACTTTT 1 chrX:3785546-3785626 ( 58) TCACTTTT 1 chrIII:13381865-13381945 ( 24) TCACTTTT 1 chrII:2435733-2435813 ( 23) TCACTTTT 1 chrIII:568942-569022 ( 44) TCACTTTT 1 chrV:10602181-10602261 ( 23) TCACTTTT 1 chrII:1200157-1200237 ( 40) TCACTTTT 1 chrV:6349767-6349847 ( 20) TCACTTTT 1 chrI:7527147-7527227 ( 64) TCACTTTT 1 chrX:15273084-15273164 ( 26) TCACTTTT 1 chrX:13726449-13726529 ( 52) TCACTTTT 1 chrX:12679720-12679800 ( 65) TCACTTTT 1 chrV:5386257-5386337 ( 24) TCACTTTT 1 chrX:16647385-16647465 ( 28) TCACTTTT 1 chrI:5782002-5782082 ( 73) TCGCTTTC 1 chrI:9427083-9427163 ( 18) TCGCTTTC 1 chrII:11020849-11020929 ( 33) TCGCTTTC 1 chrV:11680932-11681012 ( 23) TCGCTTTC 1 chrX:5071160-5071240 ( 67) TCGCTTTC 1 chrII:7496074-7496154 ( 35) TCGCTTTC 1 chrI:7316373-7316453 ( 42) TCGCTTTC 1 chrX:4875446-4875526 ( 29) TCGCTTTC 1 chrX:16631979-16632059 ( 64) TCGCTTTC 1 chrX:13146457-13146537 ( 4) TCCCTTTC 1 chrII:2977805-2977885 ( 2) TCCCTTTC 1 chrX:16534010-16534090 ( 49) TCCCTTTC 1 chrI:6868278-6868358 ( 60) TCCCTTTC 1 chrIV:4008524-4008604 ( 60) TCATTTTC 1 chrV:6353341-6353421 ( 41) TCATTTTC 1 chrI:5661991-5662071 ( 22) TCTCTTTC 1 chrV:6105605-6105685 ( 38) TCATTTTC 1 chrIV:14089892-14089972 ( 35) TCTCTTTC 1 chrII:9251696-9251776 ( 35) TCATTTTC 1 chrX:16552696-16552776 ( 5) TCATTTTC 1 chrIV:11718812-11718892 ( 43) TCATTTTC 1 chrII:8750200-8750280 ( 57) TCTCTTTC 1 chrII:11246668-11246748 ( 30) TCATTTTC 1 chrIII:3959362-3959442 ( 49) TCTCTTTC 1 chrII:4734627-4734707 ( 5) TCTCTTTC 1 chrIV:1891733-1891813 ( 25) CCACTTTC 1 chrIII:3161768-3161848 ( 11) CCACTTTC 1 chrIV:11937232-11937312 ( 11) CCACTTTC 1 chrX:11665782-11665862 ( 58) CCACTTTC 1 chrIII:8579546-8579626 ( 19) TCGCTTTT 1 chrV:16357371-16357451 ( 20) TCACTCTC 1 chrI:10409017-10409097 ( 22) TCCCTTTT 1 chrIV:2323153-2323233 ( 5) TCCCTTTT 1 chrX:8882319-8882399 ( 63) TCACTCTC 1 chrIII:11666972-11667052 ( 68) TCACCTTC 1 chrII:6989668-6989748 ( 31) TCACCTTC 1 chrII:1241495-1241575 ( 45) TCCCTTTT 1 chrI:6869094-6869174 ( 30) TCCCTTTT 1 chrI:763491-763571 ( 36) TCCCTTTT 1 chrI:10405035-10405115 ( 59) TCCCTTTT 1 chrX:12677259-12677339 ( 61) TCCCTTTT 1 chrX:5150568-5150648 ( 34) ACACTTTC 1 chrIV:10816154-10816234 ( 51) ACACTTTC 1 chrV:10602737-10602817 ( 36) ACACTTTC 1 chrV:8207076-8207156 ( 3) TCATTTTT 1 chrIV:9123171-9123251 ( 46) TCATTTTT 1 chrI:9717519-9717599 ( 37) TCTCTTTT 1 chrX:16629923-16630003 ( 24) TCATTTTT 1 chrX:16995330-16995410 ( 59) TCATTTTT 1 chrI:6167588-6167668 ( 20) TCTCTTTT 1 chrIII:6359344-6359424 ( 38) TCGTTTTC 1 chrII:8749273-8749353 ( 43) TCGTTTTC 1 chrX:1309615-1309695 ( 3) TCGTTTTC 1 chrIV:10350299-10350379 ( 6) TCAATTTC 1 chrV:14633466-14633546 ( 43) TCAATTTC 1 chrIV:4688378-4688458 ( 13) TGACTTTC 1 chrV:1892731-1892811 ( 63) TCAATTTC 1 chrV:13259070-13259150 ( 7) TGACTTTC 1 chrX:14069684-14069764 ( 41) CCACTTTT 1 chrIII:8709893-8709973 ( 32) TCACTCTT 1 chrI:13062842-13062922 ( 20) TCACCTTT 1 chrII:6178531-6178611 ( 6) TCGCCTTC 1 chrV:11741226-11741306 ( 64) ACACTTTT 1 chrV:13406645-13406725 ( 27) ACACTTTT 1 chrII:4876243-4876323 ( 36) TCCCTCTC 1 chrIII:2873565-2873645 ( 11) TCTTTTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACTTTC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.50779 E= 4.1e-092 -281 -236 -1357 156 -1357 222 -353 -1357 132 -110 -73 -225 -355 202 -1357 -134 -1357 -268 -1357 164 -1357 -268 -1357 164 -1357 -1357 -1357 168 -1357 174 -1357 -8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACTTTC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 122 E= 4.1e-092 0.040984 0.040984 0.000000 0.918033 0.000000 0.983607 0.016393 0.000000 0.721311 0.098361 0.114754 0.065574 0.024590 0.852459 0.000000 0.122951 0.000000 0.032787 0.000000 0.967213 0.000000 0.032787 0.000000 0.967213 0.000000 0.000000 0.000000 1.000000 0.000000 0.704918 0.000000 0.295082 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACTTTC MEME-2 regular expression -------------------------------------------------------------------------------- TCACTTT[CT] -------------------------------------------------------------------------------- Time 8.54 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTCWCYY MEME-3 width = 8 sites = 98 llr = 667 E-value = 2.5e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTCWCYY MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::3::: pos.-specific C :2:a2744 probability G ::::1::: matrix T a8a:4366 bits 2.4 2.2 * 1.9 * 1.7 * ** Relative 1.4 * ** Entropy 1.2 * ** * (9.8 bits) 1.0 **** *** 0.7 **** *** 0.5 **** *** 0.2 **** *** 0.0 -------- Multilevel TTTCTCTT consensus C ATCC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCWCYY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:9163225-9163305 40 2.73e-05 GACGGACAAC TTTCTCTC GAGGCGATTG chrI:10281874-10281954 44 2.73e-05 AACGGCCTTC TTTCTCTC CTCATTCCGT chrV:6105605-6105685 57 2.73e-05 AATTTCATAC TTTCTCTC TTCCCACACA chrV:11680932-11681012 38 2.73e-05 TTCTCCTCGT TTTCTCTC TCTCTCAATG chrIII:13575757-13575837 14 2.73e-05 TGATATCAAC TTTCTCTC CTTTCTTTCT chrX:5854606-5854686 12 9.29e-05 TTCGAGACAG TTTCTCTT CTTCTCAGTT chrIII:568942-569022 30 9.29e-05 GAAAGTGCAA TTTCTCTT ACCCATTCAC chrV:10602181-10602261 35 9.29e-05 actttttatt tttctctt ttcatttCAT chrII:8749273-8749353 4 9.29e-05 GAC TTTCACTC TTGCGGTGGT chrI:10744425-10744505 30 9.29e-05 TTCTAGGTCA TTTCTCTT GTTTTCCGTC chrI:6167588-6167668 58 9.29e-05 CGACTttctt tttctctt cttcttcaca chrI:10405035-10405115 26 9.29e-05 CGATTACCTC TTTCTCTT CTTCACCTCC chrII:8199934-8200014 53 9.29e-05 TTTTCTCCTT TTTCTCTT CCCCTTGTCA chrI:14967035-14967115 55 9.29e-05 cttttcaagt tttctctt tccactCTCT chrX:8004989-8005069 14 1.49e-04 CATTTCCTCT TTTCACTT GAAAGTTGAA chrIV:4008524-4008604 9 1.49e-04 CTCTCCTT TTTCTCCC CCCGATCACC chrIII:4187999-4188079 21 1.49e-04 CCAGTTCTAA TTTCACTT ATTGCGCAAC chrX:10317739-10317819 14 1.49e-04 TATCACTTCA TTTCACTT CTTTTCTAAC chrIII:8573993-8574073 8 1.49e-04 TGTTTTT TTTCACTT CCTTGATTAT chrX:3785546-3785626 22 1.49e-04 TTTCGTCTCG TTTCACTT CTGTTCTCCC chrII:8717725-8717805 8 1.49e-04 TTCCCGT TTTCACTT CATCTGTTCT chrI:6867500-6867580 41 1.49e-04 TTTAGAGGTT TTTCTCCC TCTTTTCCTT chrII:8438854-8438934 40 1.49e-04 GACCTCTAAC TTTCACTT GCTTGTTTAA chrII:1200157-1200237 58 1.49e-04 TCCCGCGACC TTTCTCCC TCGCTTTGAT chrII:11161820-11161900 61 1.49e-04 AAGGATGGAA TTTCACTT GATTAATATG chrV:20861222-20861302 43 1.49e-04 TAAATCATGT TTTCACTT GTTTGGAAGC chrV:5386257-5386337 4 1.49e-04 GAA TTTCTCCC ACCGTCTTGT chrIII:3959362-3959442 67 1.49e-04 tctcttctca tttcactt tgggca chrI:5661991-5662071 46 1.93e-04 CGTACCGCAA TTTCACCC AACTATTGTC chrII:8226108-8226188 52 1.93e-04 CTGATCATGA TTTCACCC TCCTTTCACA chrX:2212854-2212934 38 1.93e-04 CTCTTCTTCT TTTCTCCT AGCTGCCCCT chrX:5150568-5150648 21 1.93e-04 CATGGAATCA TTTCTCCT CTTGAACACT chrI:10409017-10409097 70 1.93e-04 CACCCAGCTA TTTCACCC CAA chrV:11741226-11741306 29 1.93e-04 ACTACTGAAC TTTCACCC TCAAACTGAT chrIV:11718812-11718892 1 1.93e-04 . TTTCACCC ATCACTGCGT chrX:4875446-4875526 38 1.93e-04 ctcgctttca tttctcct tctTTGCGGA chrI:6869094-6869174 19 1.93e-04 TTCATTTGAC TTTCACCC AATTCCCTTT chrII:7242910-7242990 43 1.93e-04 TCAGATCAAC TTTCTCCT TGGTTTCACC chrI:6372831-6372911 11 1.93e-04 TCACTGTGAT TTTCACCC GACCACGAAA chrX:6515442-6515522 71 2.37e-04 GCGCCAGCAC TTTCACCT GA chrIV:9802835-9802915 25 2.37e-04 ATCGGAGAAC TTTCACCT TCACTTTCAC chrX:5071160-5071240 32 2.37e-04 TTGTCGGTCT TTTCCCTC TTCTCTCCCT chrI:7527147-7527227 32 2.37e-04 TCCATCAGCT TTTCCCTC CTCCTCCCAC chrI:5880883-5880963 27 2.37e-04 CGGTCATTCT TTTCACCT AACAAAACGA chrX:17686106-17686186 16 2.37e-04 TTGACTTAGT TTTCCCTC CCGCCGATAA chrV:20693818-20693898 36 2.64e-04 TCCCAAAAAT TTTCCCTT TCAAAAAACG chrX:4809370-4809450 28 2.64e-04 CTTCCCTCAA TTTCCCTT TCCTTACGGG chrX:16534010-16534090 40 2.64e-04 AAGAAAAATC TTTCCCTT TTCCCTTTCA chrI:5394795-5394875 41 2.77e-04 TATCATGCCA TTTCCCCC TACTCACAAC chrII:4876243-4876323 10 3.14e-04 GTTTTTATC TCTCTCTC TGTTTGTTTT chrII:2977805-2977885 36 3.14e-04 CCCCGGTTAC TCTCTCTC AAAAAAAAAA chrX:8882319-8882399 73 3.14e-04 TCActctctc tctctctc chrIII:13381865-13381945 60 3.97e-04 AAGATAAATA TCTCACTT ACACTTTTCT chrIV:4399887-4399967 31 3.97e-04 TCCGTGTCCT TCTCTCCC ACTCTCTTTG chrI:8680294-8680374 11 3.97e-04 ATCCCCTGTA TCTCTCCC TCTCTTCGAC chrIII:4391476-4391556 67 3.97e-04 ACCTCAAGCT TCTCACTT TTCTTC chrI:6341127-6341207 66 3.97e-04 GCCACAAGCT TCTCACTT TCCAATC chrV:6744938-6745018 8 3.97e-04 CCCTTGA TCTCTCCC TCATTACAGC chrX:16631979-16632059 52 4.27e-04 cactaccacc tctctcct ATTTTCGCTT chrIII:13695744-13695824 67 4.56e-04 TCACTTTCCA TCTCCCTC CTCGAA chrX:3958425-3958505 59 5.32e-04 ATTTGCCTCC TTTCTTTC ATCTCCAGAT chrII:13167657-13167737 72 5.32e-04 TGCGTTTCCA TTTCTTTC A chrI:763491-763571 11 5.32e-04 CTGTCTTCCT TCTCCCTT TTTTTACAGG chrI:5782002-5782082 20 6.62e-04 TTGCGGTCCT TTTCATTC CCCCACCTAC chrX:14709702-14709782 70 6.62e-04 TCTCATTCCT TCTCCCCC GAT chrII:14627034-14627114 53 6.62e-04 CTCATTAGGC TTTCGCTT GTCTCAACCG chrX:11461679-11461759 13 6.62e-04 TAGTTTTCCT TTTCATTC GAAATATTGG chrIII:8709893-8709973 3 6.62e-04 TT TTTCATTC AAAAAGTTCA chrIV:3817403-3817483 72 6.62e-04 CGAAGCGGCG TTTCGCTT T chrII:8494508-8494588 61 6.62e-04 TCACTTACAC TTTCTTTT GAAATTCTTA chrX:16995330-16995410 73 6.62e-04 TTTTTTTTGA TTTCATTC chrII:9232664-9232744 11 6.62e-04 AAAAGATATA TTTCTTTT CCGAAAAGAA chrV:1892731-1892811 12 6.62e-04 GCTGATGATG TTTCATTC ATTCAAGAAT chrX:12679720-12679800 23 6.62e-04 AGCGGGCAGC TTTCGCTT TTGCGTGAAC chrII:11953093-11953173 55 7.68e-04 CTTTTTCTTG TTTCATTT CCATTTATCC chrV:14495605-14495685 2 7.68e-04 G TTTCTTCC TTCACGATAA chrIII:11666972-11667052 29 7.68e-04 CGAAACCAAC TTTCTTCC ATTCTATCTT chrIII:8555861-8555941 22 7.68e-04 TCACTTTCCA TTTCATTT TTATAGAAAT chrX:14069684-14069764 55 8.50e-04 TTTTTCTAGC TTTCGCCT ACCCGATTGG chrIII:2873565-2873645 22 8.50e-04 ctttttcttg tttcttct GTGCGTCTCA chrIII:11241898-11241978 17 8.50e-04 CTAGTTGCTC TTTCTTCT TTTTCTATTC chrII:1241495-1241575 58 8.50e-04 CTTTTTACAC TTTCGCCT TCTTTTGTCG chrV:5819606-5819686 46 9.15e-04 CACCTTTCCA TTTCCTTC TATCTTCTCA chrII:2994684-2994764 67 9.55e-04 GCCAACCGAA TTTCCTTT TTTTTT chrIV:2323153-2323233 14 9.55e-04 TTCCCTTTTT TTTCCTTT TTTCCAACCG chrV:13963471-13963551 49 9.55e-04 TAACTCAGAT TTTCCTTT TCCTCACTTT chrX:1309615-1309695 69 9.55e-04 AGAAAAACAT TTTCCTTT CGAT chrV:16357371-16357451 59 1.12e-03 CCACTGCCTA TCTCTTTT ACACCATTCC chrIII:6074095-6074175 43 1.12e-03 ATTTGTTTCC TCTCTTTT GAAAATGTAA chrII:2435733-2435813 52 1.12e-03 CGTGTCTGCG TCTCTTTT CCAATTGATA chrII:6989668-6989748 17 1.12e-03 TCTTCTTGTT TCTCATTC ACTCACTCAC chrV:9704038-9704118 36 1.19e-03 TTTCTCCTCA TCTCTTCC GTTTTTCTAC chrIII:8579546-8579626 50 1.19e-03 GTGCGCATCT TCTCGCCC GTTTTGGTTT chrX:16629923-16630003 9 1.24e-03 TAATCTTA TCTCTTCT AGCGCTTTCA chrV:2675884-2675964 53 1.29e-03 ACTCACCCCT TCTCATCT TGCAGACGTT chrX:8045305-8045385 24 1.34e-03 CCGCGAGCGT TCTCCTTT CATATAATAG chrX:7210626-7210706 27 1.39e-03 TTCATCATTA TCTCCTCC ATCTGTCTTT chrII:4734627-4734707 17 1.39e-03 TCTTTCTAAG TTTCGTTT CCCGTCGGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCWCYY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:9163225-9163305 2.7e-05 39_[+3]_33 chrI:10281874-10281954 2.7e-05 43_[+3]_29 chrV:6105605-6105685 2.7e-05 56_[+3]_16 chrV:11680932-11681012 2.7e-05 37_[+3]_35 chrIII:13575757-13575837 2.7e-05 13_[+3]_59 chrX:5854606-5854686 9.3e-05 11_[+3]_61 chrIII:568942-569022 9.3e-05 29_[+3]_43 chrV:10602181-10602261 9.3e-05 34_[+3]_38 chrII:8749273-8749353 9.3e-05 3_[+3]_69 chrI:10744425-10744505 9.3e-05 29_[+3]_43 chrI:6167588-6167668 9.3e-05 57_[+3]_15 chrI:10405035-10405115 9.3e-05 25_[+3]_47 chrII:8199934-8200014 9.3e-05 52_[+3]_20 chrI:14967035-14967115 9.3e-05 54_[+3]_18 chrX:8004989-8005069 0.00015 13_[+3]_59 chrIV:4008524-4008604 0.00015 8_[+3]_64 chrIII:4187999-4188079 0.00015 20_[+3]_52 chrX:10317739-10317819 0.00015 13_[+3]_59 chrIII:8573993-8574073 0.00015 7_[+3]_65 chrX:3785546-3785626 0.00015 21_[+3]_51 chrII:8717725-8717805 0.00015 7_[+3]_65 chrI:6867500-6867580 0.00015 40_[+3]_32 chrII:8438854-8438934 0.00015 39_[+3]_33 chrII:1200157-1200237 0.00015 57_[+3]_15 chrII:11161820-11161900 0.00015 60_[+3]_12 chrV:20861222-20861302 0.00015 42_[+3]_30 chrV:5386257-5386337 0.00015 3_[+3]_69 chrIII:3959362-3959442 0.00015 66_[+3]_6 chrI:5661991-5662071 0.00019 45_[+3]_27 chrII:8226108-8226188 0.00019 51_[+3]_21 chrX:2212854-2212934 0.00019 37_[+3]_35 chrX:5150568-5150648 0.00019 20_[+3]_52 chrI:10409017-10409097 0.00019 69_[+3]_3 chrV:11741226-11741306 0.00019 28_[+3]_44 chrIV:11718812-11718892 0.00019 [+3]_72 chrX:4875446-4875526 0.00019 37_[+3]_35 chrI:6869094-6869174 0.00019 18_[+3]_54 chrII:7242910-7242990 0.00019 42_[+3]_30 chrI:6372831-6372911 0.00019 10_[+3]_62 chrX:6515442-6515522 0.00024 70_[+3]_2 chrIV:9802835-9802915 0.00024 24_[+3]_48 chrX:5071160-5071240 0.00024 31_[+3]_41 chrI:7527147-7527227 0.00024 31_[+3]_41 chrI:5880883-5880963 0.00024 26_[+3]_46 chrX:17686106-17686186 0.00024 15_[+3]_57 chrV:20693818-20693898 0.00026 35_[+3]_37 chrX:4809370-4809450 0.00026 27_[+3]_45 chrX:16534010-16534090 0.00026 39_[+3]_33 chrI:5394795-5394875 0.00028 40_[+3]_32 chrII:4876243-4876323 0.00031 9_[+3]_63 chrII:2977805-2977885 0.00031 35_[+3]_37 chrX:8882319-8882399 0.00031 72_[+3] chrIII:13381865-13381945 0.0004 59_[+3]_13 chrIV:4399887-4399967 0.0004 30_[+3]_42 chrI:8680294-8680374 0.0004 10_[+3]_62 chrIII:4391476-4391556 0.0004 66_[+3]_6 chrI:6341127-6341207 0.0004 65_[+3]_7 chrV:6744938-6745018 0.0004 7_[+3]_65 chrX:16631979-16632059 0.00043 51_[+3]_21 chrIII:13695744-13695824 0.00046 66_[+3]_6 chrX:3958425-3958505 0.00053 58_[+3]_14 chrII:13167657-13167737 0.00053 71_[+3]_1 chrI:763491-763571 0.00053 10_[+3]_62 chrI:5782002-5782082 0.00066 19_[+3]_53 chrX:14709702-14709782 0.00066 69_[+3]_3 chrII:14627034-14627114 0.00066 52_[+3]_20 chrX:11461679-11461759 0.00066 12_[+3]_60 chrIII:8709893-8709973 0.00066 2_[+3]_70 chrIV:3817403-3817483 0.00066 71_[+3]_1 chrII:8494508-8494588 0.00066 60_[+3]_12 chrX:16995330-16995410 0.00066 72_[+3] chrII:9232664-9232744 0.00066 10_[+3]_62 chrV:1892731-1892811 0.00066 11_[+3]_61 chrX:12679720-12679800 0.00066 22_[+3]_50 chrII:11953093-11953173 0.00077 54_[+3]_18 chrV:14495605-14495685 0.00077 1_[+3]_71 chrIII:11666972-11667052 0.00077 28_[+3]_44 chrIII:8555861-8555941 0.00077 21_[+3]_51 chrX:14069684-14069764 0.00085 54_[+3]_18 chrIII:2873565-2873645 0.00085 21_[+3]_51 chrIII:11241898-11241978 0.00085 16_[+3]_56 chrII:1241495-1241575 0.00085 57_[+3]_15 chrV:5819606-5819686 0.00091 45_[+3]_27 chrII:2994684-2994764 0.00096 66_[+3]_6 chrIV:2323153-2323233 0.00096 13_[+3]_59 chrV:13963471-13963551 0.00096 48_[+3]_24 chrX:1309615-1309695 0.00096 68_[+3]_4 chrV:16357371-16357451 0.0011 58_[+3]_14 chrIII:6074095-6074175 0.0011 42_[+3]_30 chrII:2435733-2435813 0.0011 51_[+3]_21 chrII:6989668-6989748 0.0011 16_[+3]_56 chrV:9704038-9704118 0.0012 35_[+3]_37 chrIII:8579546-8579626 0.0012 49_[+3]_23 chrX:16629923-16630003 0.0012 8_[+3]_64 chrV:2675884-2675964 0.0013 52_[+3]_20 chrX:8045305-8045385 0.0013 23_[+3]_49 chrX:7210626-7210706 0.0014 26_[+3]_46 chrII:4734627-4734707 0.0014 16_[+3]_56 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCWCYY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTCWCYY width=8 seqs=98 chrV:9163225-9163305 ( 40) TTTCTCTC 1 chrI:10281874-10281954 ( 44) TTTCTCTC 1 chrV:6105605-6105685 ( 57) TTTCTCTC 1 chrV:11680932-11681012 ( 38) TTTCTCTC 1 chrIII:13575757-13575837 ( 14) TTTCTCTC 1 chrX:5854606-5854686 ( 12) TTTCTCTT 1 chrIII:568942-569022 ( 30) TTTCTCTT 1 chrV:10602181-10602261 ( 35) TTTCTCTT 1 chrII:8749273-8749353 ( 4) TTTCACTC 1 chrI:10744425-10744505 ( 30) TTTCTCTT 1 chrI:6167588-6167668 ( 58) TTTCTCTT 1 chrI:10405035-10405115 ( 26) TTTCTCTT 1 chrII:8199934-8200014 ( 53) TTTCTCTT 1 chrI:14967035-14967115 ( 55) TTTCTCTT 1 chrX:8004989-8005069 ( 14) TTTCACTT 1 chrIV:4008524-4008604 ( 9) TTTCTCCC 1 chrIII:4187999-4188079 ( 21) TTTCACTT 1 chrX:10317739-10317819 ( 14) TTTCACTT 1 chrIII:8573993-8574073 ( 8) TTTCACTT 1 chrX:3785546-3785626 ( 22) TTTCACTT 1 chrII:8717725-8717805 ( 8) TTTCACTT 1 chrI:6867500-6867580 ( 41) TTTCTCCC 1 chrII:8438854-8438934 ( 40) TTTCACTT 1 chrII:1200157-1200237 ( 58) TTTCTCCC 1 chrII:11161820-11161900 ( 61) TTTCACTT 1 chrV:20861222-20861302 ( 43) TTTCACTT 1 chrV:5386257-5386337 ( 4) TTTCTCCC 1 chrIII:3959362-3959442 ( 67) TTTCACTT 1 chrI:5661991-5662071 ( 46) TTTCACCC 1 chrII:8226108-8226188 ( 52) TTTCACCC 1 chrX:2212854-2212934 ( 38) TTTCTCCT 1 chrX:5150568-5150648 ( 21) TTTCTCCT 1 chrI:10409017-10409097 ( 70) TTTCACCC 1 chrV:11741226-11741306 ( 29) TTTCACCC 1 chrIV:11718812-11718892 ( 1) TTTCACCC 1 chrX:4875446-4875526 ( 38) TTTCTCCT 1 chrI:6869094-6869174 ( 19) TTTCACCC 1 chrII:7242910-7242990 ( 43) TTTCTCCT 1 chrI:6372831-6372911 ( 11) TTTCACCC 1 chrX:6515442-6515522 ( 71) TTTCACCT 1 chrIV:9802835-9802915 ( 25) TTTCACCT 1 chrX:5071160-5071240 ( 32) TTTCCCTC 1 chrI:7527147-7527227 ( 32) TTTCCCTC 1 chrI:5880883-5880963 ( 27) TTTCACCT 1 chrX:17686106-17686186 ( 16) TTTCCCTC 1 chrV:20693818-20693898 ( 36) TTTCCCTT 1 chrX:4809370-4809450 ( 28) TTTCCCTT 1 chrX:16534010-16534090 ( 40) TTTCCCTT 1 chrI:5394795-5394875 ( 41) TTTCCCCC 1 chrII:4876243-4876323 ( 10) TCTCTCTC 1 chrII:2977805-2977885 ( 36) TCTCTCTC 1 chrX:8882319-8882399 ( 73) TCTCTCTC 1 chrIII:13381865-13381945 ( 60) TCTCACTT 1 chrIV:4399887-4399967 ( 31) TCTCTCCC 1 chrI:8680294-8680374 ( 11) TCTCTCCC 1 chrIII:4391476-4391556 ( 67) TCTCACTT 1 chrI:6341127-6341207 ( 66) TCTCACTT 1 chrV:6744938-6745018 ( 8) TCTCTCCC 1 chrX:16631979-16632059 ( 52) TCTCTCCT 1 chrIII:13695744-13695824 ( 67) TCTCCCTC 1 chrX:3958425-3958505 ( 59) TTTCTTTC 1 chrII:13167657-13167737 ( 72) TTTCTTTC 1 chrI:763491-763571 ( 11) TCTCCCTT 1 chrI:5782002-5782082 ( 20) TTTCATTC 1 chrX:14709702-14709782 ( 70) TCTCCCCC 1 chrII:14627034-14627114 ( 53) TTTCGCTT 1 chrX:11461679-11461759 ( 13) TTTCATTC 1 chrIII:8709893-8709973 ( 3) TTTCATTC 1 chrIV:3817403-3817483 ( 72) TTTCGCTT 1 chrII:8494508-8494588 ( 61) TTTCTTTT 1 chrX:16995330-16995410 ( 73) TTTCATTC 1 chrII:9232664-9232744 ( 11) TTTCTTTT 1 chrV:1892731-1892811 ( 12) TTTCATTC 1 chrX:12679720-12679800 ( 23) TTTCGCTT 1 chrII:11953093-11953173 ( 55) TTTCATTT 1 chrV:14495605-14495685 ( 2) TTTCTTCC 1 chrIII:11666972-11667052 ( 29) TTTCTTCC 1 chrIII:8555861-8555941 ( 22) TTTCATTT 1 chrX:14069684-14069764 ( 55) TTTCGCCT 1 chrIII:2873565-2873645 ( 22) TTTCTTCT 1 chrIII:11241898-11241978 ( 17) TTTCTTCT 1 chrII:1241495-1241575 ( 58) TTTCGCCT 1 chrV:5819606-5819686 ( 46) TTTCCTTC 1 chrII:2994684-2994764 ( 67) TTTCCTTT 1 chrIV:2323153-2323233 ( 14) TTTCCTTT 1 chrV:13963471-13963551 ( 49) TTTCCTTT 1 chrX:1309615-1309695 ( 69) TTTCCTTT 1 chrV:16357371-16357451 ( 59) TCTCTTTT 1 chrIII:6074095-6074175 ( 43) TCTCTTTT 1 chrII:2435733-2435813 ( 52) TCTCTTTT 1 chrII:6989668-6989748 ( 17) TCTCATTC 1 chrV:9704038-9704118 ( 36) TCTCTTCC 1 chrIII:8579546-8579626 ( 50) TCTCGCCC 1 chrX:16629923-16630003 ( 9) TCTCTTCT 1 chrV:2675884-2675964 ( 53) TCTCATCT 1 chrX:8045305-8045385 ( 24) TCTCCTTT 1 chrX:7210626-7210706 ( 27) TCTCCTCC 1 chrII:4734627-4734707 ( 17) TTTCGTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCWCYY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.65378 E= 2.5e-014 -1326 -1326 -1326 168 -1326 16 -1326 130 -1326 -1326 -1326 168 -1326 225 -1326 -1326 22 -28 -141 43 -1326 172 -1326 -2 -1326 76 -1326 105 -1326 106 -1326 85 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCWCYY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 98 E= 2.5e-014 0.000000 0.000000 0.000000 1.000000 0.000000 0.234694 0.000000 0.765306 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.336735 0.173469 0.071429 0.418367 0.000000 0.693878 0.000000 0.306122 0.000000 0.357143 0.000000 0.642857 0.000000 0.438776 0.000000 0.561224 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCWCYY MEME-3 regular expression -------------------------------------------------------------------------------- T[TC]TC[TA][CT][TC][TC] -------------------------------------------------------------------------------- Time 11.85 secs. ******************************************************************************** ******************************************************************************** MOTIF AADVGAAA MEME-4 width = 8 sites = 87 llr = 578 E-value = 5.4e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif AADVGAAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 78353a9a pos.-specific C :::2:::: probability G 32437:1: matrix T ::3::::: bits 2.4 2.2 1.9 1.7 * * Relative 1.4 ** * Entropy 1.2 ** **** (9.6 bits) 1.0 ** **** 0.7 ** **** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAGAGAAA consensus G AGA sequence TC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AADVGAAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:10329735-10329815 3 3.42e-05 AA AAGAGAAA TAGATATTTG chrI:1564099-1564179 40 3.42e-05 GGCAAATTTG AAGGGAAA TGTGGAGAAA chrII:6714036-6714116 39 3.42e-05 ATTTgacaga aagagaaa ttgagtgaga chrX:17682411-17682491 32 3.42e-05 ATGTTGGAAG AAGAGAAA TTAAGAAAGG chrII:11162561-11162641 22 3.42e-05 AACAACAAAC AAGAGAAA AATGAGAGAG chrII:5899238-5899318 55 3.42e-05 GGAAAATAGA AAGAGAAA ATGAGAGAAA chrIV:5704108-5704188 52 3.42e-05 GAGGTGGAGA AAGAGAAA CCATCACGGA chrII:11246668-11246748 47 4.93e-05 CTTTTTCCGA AAGCGAAA TAAGATTACG chrI:5394795-5394875 6 1.24e-04 TAGAT AAAAGAAA CTTGGGAGTA chrI:10403941-10404021 1 1.24e-04 . gagagaaa tagagaagta chrX:14709702-14709782 22 1.24e-04 GCGTCATTTA AAAGGAAA TTTCGAATGA chrI:8452273-8452353 47 1.24e-04 ACGGAAGAAG GAGGGAAA AAGACGATGA chrIII:11742334-11742414 15 1.24e-04 AGAACAACGA GAGGGAAA AGTGAAAGGA chrX:16535383-16535463 33 1.24e-04 gagagagagt gagggaaa aagtgagagt chrI:10281874-10281954 1 1.24e-04 . GAGAGAAA AAAGAGAGAG chrII:11020849-11020929 19 1.24e-04 GAAAATGAAA AAAAGAAA ACCTTTTCGC chrIII:13381865-13381945 37 1.24e-04 CTTTTTTTCA AAAAGAAA TTGCAAAGAT chrII:2977805-2977885 57 1.24e-04 AAAAAAAACG AAAAGAAA CAGAAAACAT chrX:3982657-3982737 38 1.24e-04 CTTGAAAACG AAAGGAAA AAAAGCGAAA chrII:8730440-8730520 69 1.24e-04 AAACAGAAGA AAAAGAAA ACGT chrIII:6601444-6601524 18 1.24e-04 AAATGGCCAA AAAAGAAA TGAAAGAAGT chrX:12940960-12941040 49 1.24e-04 aagtaaaaaa aaaggaaa aTAATGAATC chrX:14581010-14581090 57 1.24e-04 TCCGGTCAGG AAAGGAAA ATCAAGAAGA chrV:12011848-12011928 53 1.24e-04 GAAGAGAAGA AAAAGAAA TTGGGAAAAT chrII:9232664-9232744 46 1.80e-04 TTTGATTTAA AATGGAAA GTTGCACTTG chrIII:9300813-9300893 63 1.80e-04 GTGTGAATAA AATGGAAA GTTTGACAAA chrII:12820132-12820212 33 1.80e-04 Gaacctataa aatggaaa gtttcaactt chrX:16647385-16647465 63 1.80e-04 GAAGGTCAAG AATGGAAA GTAGCCGAGA chrI:397169-397249 45 1.80e-04 CGAAAAGTGT AATGGAAA GTGAACAAAA chrII:13167657-13167737 11 2.12e-04 GAGTGACCGA AAACGAAA GGATTCAGAG chrI:10284502-10284582 30 2.12e-04 ACGCCGAGAA AAACGAAA CAAATAAAAG chrX:9764065-9764145 33 2.12e-04 gcagaacgaa aaacgaaa cacgacaaaa chrX:7665516-7665596 19 2.60e-04 CTGTCAGAAA AATCGAAA AGTCATAGAC chrX:16634275-16634355 68 2.60e-04 TTTGATAGAA AATCGAAA GTGCT chrX:14903600-14903680 26 2.60e-04 GTGGTATATC AATCGAAA GTTGATTCTG chrIV:12429607-12429687 35 2.60e-04 TTTTATCTGA AATCGAAA AAAAAGTTAA chrII:10523186-10523266 16 2.60e-04 GAGGATGGAA AATCGAAA GGCAGTTGGA chrI:9399750-9399830 9 2.60e-04 CTTTAAGA AATCGAAA ATCGGTGAAA chrIII:568942-569022 16 2.60e-04 AATTATAATC AATCGAAA GTGCAATTTC chrV:9225156-9225236 27 2.60e-04 AAAGTAAAAA AGGAGAAA CTATTACACA chrIV:4688378-4688458 30 2.60e-04 CACCCCAAAG AATCGAAA GTTTCGGGAG chrI:11839697-11839777 41 2.60e-04 AAAATTGGGT AGGGGAAA GCTGCGCGCC chrX:16552696-16552776 51 2.60e-04 TACAGCCGGA AATCGAAA GTTCTCGTCT chrIII:2634724-2634804 27 2.60e-04 GGATTTTCCG AGGGGAAA AGGTCAAAAT chrI:5882110-5882190 52 2.60e-04 CGTCTTCGAG AGGAGAAA GCAACACGGA chrI:5295350-5295430 72 2.94e-04 AACGAACGAT GAAAGAAA A chrI:3916822-3916902 47 4.05e-04 GGCCTATTCT AAGAGAGA GAGTGTCCTT chrX:1309615-1309695 58 4.05e-04 AGGGATGGGT AAGAAAAA CATTTTCCTT chrX:8200370-8200450 4 4.05e-04 AAG AAGAAAAA ACGGACATAG chrIV:4641145-4641225 52 4.05e-04 GAGAAGAGGG AAGAAAAA ACTGAATAAA chrII:9019871-9019951 59 4.05e-04 AAAGATTCGG AAGAGAGA GTAGTTTATC chrX:16534010-16534090 30 4.05e-04 TAACTTTCCG AAGAAAAA TCTTTCCCTT chrI:3251154-3251234 68 4.05e-04 AATAACGATG Aagagaga gagag chrII:11881192-11881272 24 4.05e-04 GGGAAAGGAT AAGGAAAA AGTTGGAGAG chrIV:9123171-9123251 59 5.28e-04 TTTTTTATTG AGAAGAAA ATGACAATGA chrX:13146457-13146537 68 5.28e-04 AAGCATTTGC AAGCAAAA TACTC chrX:4663124-4663204 3 5.28e-04 GA AAGCAAAA ATTCTCCCGT chrI:6866411-6866491 65 5.28e-04 AATATGTGAA GATCGAAA GTGAATTA chrX:7553499-7553579 28 5.28e-04 AGAATAAGAT GGGGGAAA TTTTTGAGTG chrX:15772873-15772953 45 5.65e-04 TGATTGaatg agtagaaa agaaagagaa chrI:14991804-14991884 68 5.65e-04 ACATCTCTGC AGTAGAAA CTTGT chrII:6178531-6178611 54 7.27e-04 GTTATCGGCT GAGAAAAA TGATTAATGA chrII:10706140-10706220 34 7.27e-04 CATCCAACTT GAGAAAAA GGGAGTGGAA chrV:13406645-13406725 8 7.27e-04 TTTTCTT AAAGAAAA CTGTCCAAAG chrI:6331958-6332038 7 8.49e-04 TAAGTG AATGAAAA TTAAAACACA chrX:11665782-11665862 17 8.49e-04 GGCAGATGAC AATAAAAA ACTTGTCCAC chrX:8554167-8554247 9 9.81e-04 TTGTCGTC AAACAAAA GCCAAAGGAT chrX:433151-433231 16 9.81e-04 CTACTAAGGT GGAAGAAA ACGTGAAAGT chrIV:5858388-5858468 41 9.81e-04 AGAAAGTGAT GGAAGAAA GGTATATGGG chrIII:8709893-8709973 55 1.11e-03 GTCTCGCACG AATCAAAA CGGGTGCAAC chrIII:9867932-9868012 42 1.11e-03 AAGCGAAAGA AGGGGAGA GTTAGAAGCA chrIII:5419689-5419769 9 1.11e-03 TAGTAAAA GGTAGAAA AAGTGAAACG chrIII:886841-886921 46 1.11e-03 CGACGAAGAA AATCGAGA GATAGGGTTT chrX:12875001-12875081 1 1.11e-03 . AGGGAAAA GAAGTGAAAG chrIV:5940774-5940854 33 1.18e-03 TGGGCAGGTG GAAAGAGA AGGTGGAGAA chrIV:8317956-8318036 23 1.18e-03 GGAGTGAATC GAAGAAAA GATGCAATCA chrX:6027274-6027354 35 1.18e-03 CAGTTCCAAC GAAAGAGA TACATGGTGG chrII:8226108-8226188 7 1.30e-03 TATGGA GATGAAAA CCGGTCGATC chrI:5880883-5880963 43 1.30e-03 CTAACAAAAC GATAGAGA TAATGTTCCA chrIV:3600099-3600179 40 1.37e-03 AATAACGACC GAACAAAA AAGAGAAAAA chrI:10744425-10744505 70 1.37e-03 ACATTTAGAT GAACAAAA GAA chrIV:7836667-7836747 1 1.53e-03 . GGGAAAAA TCTTCTGAAC chrX:9893256-9893336 16 1.61e-03 TTCCAGAGTC AGTAGAGA CGGAGACAGT chrV:9163225-9163305 20 1.68e-03 GTAGGTGATA GAGGAAGA AGGACGGACA chrV:8799548-8799628 38 1.68e-03 AGGGAGACAT AAAAAAGA ATCGCCAGGT chrX:3931147-3931227 16 1.68e-03 CTAGGTATAA AAAGAAGA TACACTCCCC chrIV:3817403-3817483 7 1.74e-03 CGGGGA AATGAAGA GAGCGATAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AADVGAAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:10329735-10329815 3.4e-05 2_[+4]_70 chrI:1564099-1564179 3.4e-05 39_[+4]_33 chrII:6714036-6714116 3.4e-05 38_[+4]_34 chrX:17682411-17682491 3.4e-05 31_[+4]_41 chrII:11162561-11162641 3.4e-05 21_[+4]_51 chrII:5899238-5899318 3.4e-05 54_[+4]_18 chrIV:5704108-5704188 3.4e-05 51_[+4]_21 chrII:11246668-11246748 4.9e-05 46_[+4]_26 chrI:5394795-5394875 0.00012 5_[+4]_67 chrI:10403941-10404021 0.00012 [+4]_72 chrX:14709702-14709782 0.00012 21_[+4]_51 chrI:8452273-8452353 0.00012 46_[+4]_26 chrIII:11742334-11742414 0.00012 14_[+4]_58 chrX:16535383-16535463 0.00012 32_[+4]_40 chrI:10281874-10281954 0.00012 [+4]_72 chrII:11020849-11020929 0.00012 18_[+4]_54 chrIII:13381865-13381945 0.00012 36_[+4]_36 chrII:2977805-2977885 0.00012 56_[+4]_16 chrX:3982657-3982737 0.00012 37_[+4]_35 chrII:8730440-8730520 0.00012 68_[+4]_4 chrIII:6601444-6601524 0.00012 17_[+4]_55 chrX:12940960-12941040 0.00012 48_[+4]_24 chrX:14581010-14581090 0.00012 56_[+4]_16 chrV:12011848-12011928 0.00012 52_[+4]_20 chrII:9232664-9232744 0.00018 45_[+4]_27 chrIII:9300813-9300893 0.00018 62_[+4]_10 chrII:12820132-12820212 0.00018 32_[+4]_40 chrX:16647385-16647465 0.00018 62_[+4]_10 chrI:397169-397249 0.00018 44_[+4]_28 chrII:13167657-13167737 0.00021 10_[+4]_62 chrI:10284502-10284582 0.00021 29_[+4]_43 chrX:9764065-9764145 0.00021 32_[+4]_40 chrX:7665516-7665596 0.00026 18_[+4]_54 chrX:16634275-16634355 0.00026 67_[+4]_5 chrX:14903600-14903680 0.00026 25_[+4]_47 chrIV:12429607-12429687 0.00026 34_[+4]_38 chrII:10523186-10523266 0.00026 15_[+4]_57 chrI:9399750-9399830 0.00026 8_[+4]_64 chrIII:568942-569022 0.00026 15_[+4]_57 chrV:9225156-9225236 0.00026 26_[+4]_46 chrIV:4688378-4688458 0.00026 29_[+4]_43 chrI:11839697-11839777 0.00026 40_[+4]_32 chrX:16552696-16552776 0.00026 50_[+4]_22 chrIII:2634724-2634804 0.00026 26_[+4]_46 chrI:5882110-5882190 0.00026 51_[+4]_21 chrI:5295350-5295430 0.00029 71_[+4]_1 chrI:3916822-3916902 0.00041 46_[+4]_26 chrX:1309615-1309695 0.00041 57_[+4]_15 chrX:8200370-8200450 0.00041 3_[+4]_69 chrIV:4641145-4641225 0.00041 51_[+4]_21 chrII:9019871-9019951 0.00041 58_[+4]_14 chrX:16534010-16534090 0.00041 29_[+4]_43 chrI:3251154-3251234 0.00041 67_[+4]_5 chrII:11881192-11881272 0.00041 23_[+4]_49 chrIV:9123171-9123251 0.00053 58_[+4]_14 chrX:13146457-13146537 0.00053 67_[+4]_5 chrX:4663124-4663204 0.00053 2_[+4]_70 chrI:6866411-6866491 0.00053 64_[+4]_8 chrX:7553499-7553579 0.00053 27_[+4]_45 chrX:15772873-15772953 0.00057 44_[+4]_28 chrI:14991804-14991884 0.00057 67_[+4]_5 chrII:6178531-6178611 0.00073 53_[+4]_19 chrII:10706140-10706220 0.00073 33_[+4]_39 chrV:13406645-13406725 0.00073 7_[+4]_65 chrI:6331958-6332038 0.00085 6_[+4]_66 chrX:11665782-11665862 0.00085 16_[+4]_56 chrX:8554167-8554247 0.00098 8_[+4]_64 chrX:433151-433231 0.00098 15_[+4]_57 chrIV:5858388-5858468 0.00098 40_[+4]_32 chrIII:8709893-8709973 0.0011 54_[+4]_18 chrIII:9867932-9868012 0.0011 41_[+4]_31 chrIII:5419689-5419769 0.0011 8_[+4]_64 chrIII:886841-886921 0.0011 45_[+4]_27 chrX:12875001-12875081 0.0011 [+4]_72 chrIV:5940774-5940854 0.0012 32_[+4]_40 chrIV:8317956-8318036 0.0012 22_[+4]_50 chrX:6027274-6027354 0.0012 34_[+4]_38 chrII:8226108-8226188 0.0013 6_[+4]_66 chrI:5880883-5880963 0.0013 42_[+4]_30 chrIV:3600099-3600179 0.0014 39_[+4]_33 chrI:10744425-10744505 0.0014 69_[+4]_3 chrIV:7836667-7836747 0.0015 [+4]_72 chrX:9893256-9893336 0.0016 15_[+4]_57 chrV:9163225-9163305 0.0017 19_[+4]_53 chrV:8799548-8799628 0.0017 37_[+4]_35 chrX:3931147-3931227 0.0017 15_[+4]_57 chrIV:3817403-3817483 0.0017 6_[+4]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AADVGAAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AADVGAAA width=8 seqs=87 chrIV:10329735-10329815 ( 3) AAGAGAAA 1 chrI:1564099-1564179 ( 40) AAGGGAAA 1 chrII:6714036-6714116 ( 39) AAGAGAAA 1 chrX:17682411-17682491 ( 32) AAGAGAAA 1 chrII:11162561-11162641 ( 22) AAGAGAAA 1 chrII:5899238-5899318 ( 55) AAGAGAAA 1 chrIV:5704108-5704188 ( 52) AAGAGAAA 1 chrII:11246668-11246748 ( 47) AAGCGAAA 1 chrI:5394795-5394875 ( 6) AAAAGAAA 1 chrI:10403941-10404021 ( 1) GAGAGAAA 1 chrX:14709702-14709782 ( 22) AAAGGAAA 1 chrI:8452273-8452353 ( 47) GAGGGAAA 1 chrIII:11742334-11742414 ( 15) GAGGGAAA 1 chrX:16535383-16535463 ( 33) GAGGGAAA 1 chrI:10281874-10281954 ( 1) GAGAGAAA 1 chrII:11020849-11020929 ( 19) AAAAGAAA 1 chrIII:13381865-13381945 ( 37) AAAAGAAA 1 chrII:2977805-2977885 ( 57) AAAAGAAA 1 chrX:3982657-3982737 ( 38) AAAGGAAA 1 chrII:8730440-8730520 ( 69) AAAAGAAA 1 chrIII:6601444-6601524 ( 18) AAAAGAAA 1 chrX:12940960-12941040 ( 49) AAAGGAAA 1 chrX:14581010-14581090 ( 57) AAAGGAAA 1 chrV:12011848-12011928 ( 53) AAAAGAAA 1 chrII:9232664-9232744 ( 46) AATGGAAA 1 chrIII:9300813-9300893 ( 63) AATGGAAA 1 chrII:12820132-12820212 ( 33) AATGGAAA 1 chrX:16647385-16647465 ( 63) AATGGAAA 1 chrI:397169-397249 ( 45) AATGGAAA 1 chrII:13167657-13167737 ( 11) AAACGAAA 1 chrI:10284502-10284582 ( 30) AAACGAAA 1 chrX:9764065-9764145 ( 33) AAACGAAA 1 chrX:7665516-7665596 ( 19) AATCGAAA 1 chrX:16634275-16634355 ( 68) AATCGAAA 1 chrX:14903600-14903680 ( 26) AATCGAAA 1 chrIV:12429607-12429687 ( 35) AATCGAAA 1 chrII:10523186-10523266 ( 16) AATCGAAA 1 chrI:9399750-9399830 ( 9) AATCGAAA 1 chrIII:568942-569022 ( 16) AATCGAAA 1 chrV:9225156-9225236 ( 27) AGGAGAAA 1 chrIV:4688378-4688458 ( 30) AATCGAAA 1 chrI:11839697-11839777 ( 41) AGGGGAAA 1 chrX:16552696-16552776 ( 51) AATCGAAA 1 chrIII:2634724-2634804 ( 27) AGGGGAAA 1 chrI:5882110-5882190 ( 52) AGGAGAAA 1 chrI:5295350-5295430 ( 72) GAAAGAAA 1 chrI:3916822-3916902 ( 47) AAGAGAGA 1 chrX:1309615-1309695 ( 58) AAGAAAAA 1 chrX:8200370-8200450 ( 4) AAGAAAAA 1 chrIV:4641145-4641225 ( 52) AAGAAAAA 1 chrII:9019871-9019951 ( 59) AAGAGAGA 1 chrX:16534010-16534090 ( 30) AAGAAAAA 1 chrI:3251154-3251234 ( 68) AAGAGAGA 1 chrII:11881192-11881272 ( 24) AAGGAAAA 1 chrIV:9123171-9123251 ( 59) AGAAGAAA 1 chrX:13146457-13146537 ( 68) AAGCAAAA 1 chrX:4663124-4663204 ( 3) AAGCAAAA 1 chrI:6866411-6866491 ( 65) GATCGAAA 1 chrX:7553499-7553579 ( 28) GGGGGAAA 1 chrX:15772873-15772953 ( 45) AGTAGAAA 1 chrI:14991804-14991884 ( 68) AGTAGAAA 1 chrII:6178531-6178611 ( 54) GAGAAAAA 1 chrII:10706140-10706220 ( 34) GAGAAAAA 1 chrV:13406645-13406725 ( 8) AAAGAAAA 1 chrI:6331958-6332038 ( 7) AATGAAAA 1 chrX:11665782-11665862 ( 17) AATAAAAA 1 chrX:8554167-8554247 ( 9) AAACAAAA 1 chrX:433151-433231 ( 16) GGAAGAAA 1 chrIV:5858388-5858468 ( 41) GGAAGAAA 1 chrIII:8709893-8709973 ( 55) AATCAAAA 1 chrIII:9867932-9868012 ( 42) AGGGGAGA 1 chrIII:5419689-5419769 ( 9) GGTAGAAA 1 chrIII:886841-886921 ( 46) AATCGAGA 1 chrX:12875001-12875081 ( 1) AGGGAAAA 1 chrIV:5940774-5940854 ( 33) GAAAGAGA 1 chrIV:8317956-8318036 ( 23) GAAGAAAA 1 chrX:6027274-6027354 ( 35) GAAAGAGA 1 chrII:8226108-8226188 ( 7) GATGAAAA 1 chrI:5880883-5880963 ( 43) GATAGAGA 1 chrIV:3600099-3600179 ( 40) GAACAAAA 1 chrI:10744425-10744505 ( 70) GAACAAAA 1 chrIV:7836667-7836747 ( 1) GGGAAAAA 1 chrX:9893256-9893336 ( 16) AGTAGAGA 1 chrV:9163225-9163305 ( 20) GAGGAAGA 1 chrV:8799548-8799628 ( 38) AAAAAAGA 1 chrX:3931147-3931227 ( 16) AAAGAAGA 1 chrIV:3817403-3817483 ( 7) AATGAAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AADVGAAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.72594 E= 5.4e+001 137 -1309 41 -1309 152 -1309 -14 -1309 11 -1309 104 -6 67 20 66 -1309 -6 -1309 193 -1309 179 -1309 -1309 -1309 156 -1309 -34 -1309 179 -1309 -1309 -1309 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AADVGAAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 87 E= 5.4e+001 0.747126 0.000000 0.252874 0.000000 0.827586 0.000000 0.172414 0.000000 0.310345 0.000000 0.390805 0.298851 0.459770 0.241379 0.298851 0.000000 0.275862 0.000000 0.724138 0.000000 1.000000 0.000000 0.000000 0.000000 0.850575 0.000000 0.149425 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AADVGAAA MEME-4 regular expression -------------------------------------------------------------------------------- [AG]A[GAT][AGC][GA]AAA -------------------------------------------------------------------------------- Time 15.00 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGGGCSG MEME-5 width = 8 sites = 12 llr = 120 E-value = 1.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGGCSG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::22: pos.-specific C :3:1:73: probability G a8a9a24a matrix T ::::::1: bits 2.4 * * * * 2.2 * * * * 1.9 * *** * 1.7 * *** * Relative 1.4 ***** * Entropy 1.2 ***** * (14.5 bits) 1.0 ****** * 0.7 ****** * 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGGGCGG consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGCSG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:3283021-3283101 51 1.89e-06 TACGATACCC GGGGGCGG TGGCAGGCTT chrII:158502-158582 36 3.98e-06 TTTTCAATTC GGGGGCCG CGAGGTTGAA chrV:6349767-6349847 44 3.98e-06 TCCTTGAACC GGGGGCCG CCGTGTGTCC chrII:1241495-1241575 34 6.08e-06 CCCGTCACCG GCGGGCGG ATTTCCCTTT chrI:5210135-5210215 70 1.06e-05 GGGCAAAAGA GGGGGCAG AAG chrIV:1891733-1891813 1 1.74e-05 . GGGGGAGG GAGGGAGAGT chrIII:5419689-5419769 59 1.74e-05 TAAAAGTTTC GGGGGGCG AGAAGAGACA chrI:13062842-13062922 53 1.74e-05 TAGGTTTCAA GGGGGAGG ATGGATGGCA chrII:8226108-8226188 37 2.34e-05 GTGCCCCCAA GGGGGCTG ATCATGATTT chrII:1200157-1200237 3 3.05e-05 GC GCGGGGGG TTTTCACTAC chrX:12679720-12679800 14 3.05e-05 ACGATTGACA GCGGGCAG CTTTCGCTTT chrX:1309615-1309695 18 4.04e-05 TTCCGAGAAA GGGCGCCG GAGAACAAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGCSG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:3283021-3283101 1.9e-06 50_[+5]_22 chrII:158502-158582 4e-06 35_[+5]_37 chrV:6349767-6349847 4e-06 43_[+5]_29 chrII:1241495-1241575 6.1e-06 33_[+5]_39 chrI:5210135-5210215 1.1e-05 69_[+5]_3 chrIV:1891733-1891813 1.7e-05 [+5]_72 chrIII:5419689-5419769 1.7e-05 58_[+5]_14 chrI:13062842-13062922 1.7e-05 52_[+5]_20 chrII:8226108-8226188 2.3e-05 36_[+5]_36 chrII:1200157-1200237 3.1e-05 2_[+5]_70 chrX:12679720-12679800 3.1e-05 13_[+5]_59 chrX:1309615-1309695 4e-05 17_[+5]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGCSG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGGCSG width=8 seqs=12 chrI:3283021-3283101 ( 51) GGGGGCGG 1 chrII:158502-158582 ( 36) GGGGGCCG 1 chrV:6349767-6349847 ( 44) GGGGGCCG 1 chrII:1241495-1241575 ( 34) GCGGGCGG 1 chrI:5210135-5210215 ( 70) GGGGGCAG 1 chrIV:1891733-1891813 ( 1) GGGGGAGG 1 chrIII:5419689-5419769 ( 59) GGGGGGCG 1 chrI:13062842-13062922 ( 53) GGGGGAGG 1 chrII:8226108-8226188 ( 37) GGGGGCTG 1 chrII:1200157-1200237 ( 3) GCGGGGGG 1 chrX:12679720-12679800 ( 14) GCGGGCAG 1 chrX:1309615-1309695 ( 18) GGGCGCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGCSG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.1553 E= 1.1e+002 -1023 -1023 240 -1023 -1023 25 198 -1023 -1023 -1023 240 -1023 -1023 -134 227 -1023 -1023 -1023 240 -1023 -79 166 -19 -1023 -79 66 113 -190 -1023 -1023 240 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGCSG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.1e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.083333 0.916667 0.000000 0.000000 0.000000 1.000000 0.000000 0.166667 0.666667 0.166667 0.000000 0.166667 0.333333 0.416667 0.083333 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGCSG MEME-5 regular expression -------------------------------------------------------------------------------- G[GC]GGGC[GC]G -------------------------------------------------------------------------------- Time 18.01 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:7877972-7878052 2.06e-02 27_[+1(1.47e-05)]_45 chrII:11881192-11881272 1.10e-02 80 chrI:14967035-14967115 1.24e-02 14_[+2(6.26e-05)]_1_[+2(2.53e-05)]_\ 3_[+2(6.26e-05)]_12_[+3(9.29e-05)]_18 chrV:10602737-10602817 2.65e-04 6_[+1(1.47e-05)]_25_[+3(9.29e-05)]_\ 33 chrX:16631979-16632059 6.75e-02 63_[+2(7.93e-05)]_9 chrX:13387726-13387806 6.66e-02 55_[+1(1.47e-05)]_17 chrII:4734627-4734707 3.75e-02 80 chrI:6868278-6868358 1.65e-02 59_[+2(9.79e-05)]_13 chrX:6027274-6027354 6.46e-05 6_[+2(2.53e-05)]_36_[+1(5.66e-05)]_\ 22 chrX:15888143-15888223 4.21e-02 72_[+1(5.66e-05)] chrIII:13695744-13695824 3.27e-02 17_[+2(2.53e-05)]_31_[+2(2.53e-05)]_\ 16 chrI:397169-397249 5.43e-02 80 chrI:6372831-6372911 2.43e-04 30_[+1(7.88e-05)]_42 chrX:12677259-12677339 9.50e-02 80 chrV:2675884-2675964 1.30e-02 80 chrI:2167906-2167986 5.59e-02 43_[+2(2.53e-05)]_29 chrV:6744938-6745018 3.22e-02 39_[+2(2.53e-05)]_33 chrIV:5704108-5704188 3.31e-03 9_[+1(5.66e-05)]_34_[+4(3.42e-05)]_\ 21 chrII:8199934-8200014 2.59e-03 52_[+3(9.29e-05)]_7_[+2(2.53e-05)]_\ 5 chrII:15260719-15260799 8.31e-02 71_[+2(2.53e-05)]_1 chrI:7881652-7881732 5.52e-02 80 chrI:10405035-10405115 1.31e-02 25_[+3(9.29e-05)]_47 chrX:3932093-3932173 1.65e-02 19_[+1(7.88e-05)]_53 chrIII:3959362-3959442 8.73e-03 52_[+3(2.73e-05)]_20 chrX:9764065-9764145 1.44e-04 59_[+2(2.53e-05)]_13 chrII:11246668-11246748 6.60e-06 46_[+4(4.93e-05)]_17_[+4(3.42e-05)]_\ 1 chrX:16647385-16647465 8.98e-05 27_[+2(6.26e-05)]_45 chrX:17686106-17686186 5.33e-03 40_[+2(2.53e-05)]_32 chrV:5386257-5386337 3.08e-02 23_[+2(6.26e-05)]_49 chrX:12679720-12679800 8.88e-04 13_[+5(3.05e-05)]_43_[+2(6.26e-05)]_\ 8 chrX:13726449-13726529 1.93e-02 51_[+2(6.26e-05)]_21 chrII:5899238-5899318 1.62e-03 54_[+4(3.42e-05)]_3_[+1(3.72e-05)]_\ 7 chrI:10352590-10352670 3.63e-04 21_[+2(2.53e-05)]_40_[+2(2.53e-05)]_\ 3 chrV:13406645-13406725 1.38e-02 80 chrII:12820132-12820212 4.12e-03 80 chrV:12011848-12011928 1.14e-03 29_[+1(1.47e-05)]_43 chrI:5880883-5880963 2.71e-02 80 chrI:763491-763571 7.50e-05 80 chrX:8045305-8045385 4.84e-03 48_[+1(5.66e-05)]_24 chrI:6167588-6167668 3.18e-02 17_[+3(9.29e-05)]_32_[+3(9.29e-05)]_\ 15 chrII:7242910-7242990 2.41e-01 80 chrX:14581010-14581090 1.42e-02 35_[+1(5.66e-05)]_37 chrX:15273084-15273164 1.79e-02 25_[+2(6.26e-05)]_47 chrIII:8579546-8579626 6.77e-02 80 chrI:6869094-6869174 6.58e-02 80 chrX:7553499-7553579 3.75e-03 41_[+1(1.47e-05)]_31 chrII:11307488-11307568 8.42e-01 80 chrI:5882110-5882190 7.24e-04 4_[+1(7.88e-05)]_68 chrX:4875446-4875526 1.16e-02 28_[+2(7.93e-05)]_44 chrI:3251154-3251234 8.80e-03 38_[+1(1.47e-05)]_34 chrX:9893256-9893336 9.12e-02 80 chrI:14458333-14458413 3.22e-02 80 chrV:20861222-20861302 3.97e-05 66_[+4(4.93e-05)]_6 chrI:6866411-6866491 2.22e-03 11_[+1(1.47e-05)]_61 chrX:3931147-3931227 5.21e-01 80 chrII:1241495-1241575 5.19e-04 33_[+5(6.08e-06)]_39 chrI:6341127-6341207 1.69e-02 3_[+2(2.53e-05)]_56_[+2(2.53e-05)]_\ 5 chrI:7527147-7527227 2.50e-02 63_[+2(6.26e-05)]_9 chrX:16534010-16534090 4.77e-04 48_[+2(9.79e-05)]_24 chrIII:8555861-8555941 3.98e-03 11_[+2(2.53e-05)]_61 chrV:20713659-20713739 2.92e-01 80 chrX:12875001-12875081 7.68e-05 10_[+1(1.47e-05)]_21_[+2(2.53e-05)]_\ 33 chrII:6989668-6989748 1.42e-01 80 chrIV:7836667-7836747 7.20e-03 25_[+2(2.53e-05)]_47 chrII:8750200-8750280 5.79e-02 80 chrII:9019871-9019951 2.35e-03 15_[+1(2.36e-05)]_57 chrIII:11241898-11241978 3.98e-03 66_[+2(2.53e-05)]_6 chrIV:11718812-11718892 1.94e-02 80 chrIII:9300813-9300893 6.10e-02 80 chrI:10744425-10744505 2.21e-03 8_[+1(5.66e-05)]_13_[+3(9.29e-05)]_\ 43 chrX:12940960-12941040 5.12e-02 80 chrI:7316373-7316453 2.47e-04 41_[+2(7.93e-05)]_23_[+1(7.88e-05)] chrI:13062842-13062922 6.12e-07 9_[+1(3.72e-05)]_8_[+3(2.73e-05)]_\ 19_[+5(1.74e-05)]_20 chrIV:4641145-4641225 1.14e-02 70_[+1(7.88e-05)]_2 chrX:8200370-8200450 5.17e-04 48_[+2(2.53e-05)]_24 chrIV:10816154-10816234 3.61e-02 80 chrIII:11666972-11667052 1.34e-01 80 chrX:11665782-11665862 1.85e-02 80 chrI:5295350-5295430 2.12e-02 80 chrI:10284502-10284582 2.72e-02 51_[+1(7.88e-05)]_21 chrV:11741226-11741306 3.94e-02 80 chrX:1309615-1309695 2.31e-06 17_[+5(4.04e-05)]_7_[+1(1.47e-05)]_\ 40 chrII:11162561-11162641 7.39e-03 21_[+4(3.42e-05)]_8_[+1(7.88e-05)]_\ 35 chrV:13259070-13259150 3.00e-02 80 chrI:5075620-5075700 5.47e-01 80 chrV:1892731-1892811 1.43e-04 37_[+1(7.88e-05)]_11_[+3(2.73e-05)]_\ 2_[+3(2.73e-05)]_6 chrII:11161820-11161900 2.95e-03 45_[+1(1.47e-05)]_27 chrII:8094077-8094157 2.00e-02 23_[+1(1.47e-05)]_49 chrII:4821986-4822066 1.32e-02 58_[+1(7.88e-05)]_14 chrII:9232664-9232744 8.94e-03 80 chrIV:12401786-12401866 4.49e-02 58_[+1(1.47e-05)]_14 chrV:11302858-11302938 6.31e-02 51_[+1(1.47e-05)]_21 chrII:7496074-7496154 7.59e-02 34_[+2(7.93e-05)]_38 chrIV:9673343-9673423 3.45e-02 19_[+1(1.47e-05)]_53 chrIII:886841-886921 7.14e-02 80 chrIV:7440365-7440445 4.43e-02 55_[+2(2.53e-05)]_8_[+2(6.26e-05)]_\ 1 chrIII:4391476-4391556 3.08e-02 34_[+2(2.53e-05)]_26_[+2(6.26e-05)]_\ 4 chrIII:2634724-2634804 3.15e-02 80 chrIII:11378597-11378677 8.81e-02 34_[+1(1.47e-05)]_38 chrI:8680294-8680374 5.66e-03 50_[+2(2.53e-05)]_22 chrIV:3600099-3600179 2.27e-03 47_[+4(3.42e-05)]_25 chrV:6349767-6349847 5.41e-04 19_[+2(6.26e-05)]_16_[+5(3.98e-06)]_\ 29 chrV:10662145-10662225 1.14e-01 80 chrV:13963471-13963551 2.37e-03 59_[+2(2.53e-05)]_13 chrII:8749273-8749353 4.56e-02 3_[+3(9.29e-05)]_69 chrIII:13575757-13575837 7.41e-02 13_[+3(2.73e-05)]_59 chrIV:7977591-7977671 2.70e-01 80 chrII:1200157-1200237 3.92e-04 2_[+5(3.05e-05)]_29_[+2(6.26e-05)]_\ 33 chrII:8380327-8380407 1.33e-03 8_[+2(2.53e-05)]_64 chrIII:5419689-5419769 2.86e-03 58_[+5(1.74e-05)]_14 chrX:17070644-17070724 1.61e-01 80 chrV:10602181-10602261 4.76e-04 22_[+2(6.26e-05)]_4_[+3(9.29e-05)]_\ 38 chrIII:6601444-6601524 2.99e-02 80 chrII:8730440-8730520 6.89e-03 48_[+4(3.42e-05)]_24 chrV:14495605-14495685 1.66e-02 38_[+2(2.53e-05)]_[+2(9.79e-05)]_26 chrV:5819606-5819686 1.61e-01 80 chrX:8882319-8882399 4.06e-04 38_[+1(7.88e-05)]_34 chrX:3982657-3982737 1.61e-02 47_[+4(4.93e-05)]_25 chrX:16995330-16995410 9.98e-02 80 chrX:16552696-16552776 4.08e-03 80 chrIV:4399887-4399967 2.77e-01 80 chrII:8494508-8494588 5.94e-06 7_[+4(3.42e-05)]_29_[+2(2.53e-05)]_\ 28 chrI:3283021-3283101 2.11e-04 29_[+2(2.53e-05)]_13_[+5(1.89e-06)]_\ 22 chrI:11839697-11839777 1.51e-04 51_[+5(7.07e-05)]_1_[+1(2.36e-05)]_\ 12 chrI:5210135-5210215 3.46e-04 69_[+5(1.06e-05)]_3 chrIV:8317956-8318036 2.82e-01 80 chrIV:4688378-4688458 1.20e-05 80 chrII:10706140-10706220 4.60e-04 50_[+4(3.42e-05)]_22 chrII:2977805-2977885 3.22e-04 1_[+2(9.79e-05)]_71 chrIII:750183-750263 3.07e-01 80 chrII:9251696-9251776 1.35e-02 80 chrX:4663124-4663204 2.07e-03 44_[+4(3.42e-05)]_28 chrIV:2323153-2323233 1.85e-01 80 chrV:8668333-8668413 9.21e-02 59_[+1(5.66e-05)]_13 chrIV:3817403-3817483 3.27e-02 80 chrX:13146457-13146537 4.02e-06 3_[+2(9.79e-05)]_41_[+1(2.36e-05)]_\ 20 chrIII:2873565-2873645 3.15e-01 80 chrX:7778966-7779046 1.82e-01 80 chrV:9225156-9225236 1.30e-02 12_[+1(1.47e-05)]_60 chrI:10409017-10409097 8.74e-02 80 chrIV:14089892-14089972 4.87e-06 3_[+1(2.36e-05)]_69 chrIII:568942-569022 3.75e-04 29_[+3(9.29e-05)]_6_[+2(6.26e-05)]_\ 29 chrI:9698884-9698964 5.95e-01 80 chrII:2435733-2435813 1.71e-02 22_[+2(6.26e-05)]_50 chrX:17682411-17682491 4.62e-03 31_[+4(3.42e-05)]_6_[+4(3.42e-05)]_\ 27 chrIII:4189782-4189862 5.18e-01 80 chrIV:11937232-11937312 3.00e-02 80 chrX:5150568-5150648 2.72e-03 80 chrX:5071160-5071240 1.72e-02 66_[+2(7.93e-05)]_6 chrX:16555869-16555949 6.44e-02 12_[+1(7.88e-05)]_60 chrX:5075670-5075750 5.89e-03 44_[+4(4.93e-05)]_28 chrII:11193651-11193731 4.70e-01 80 chrV:11680932-11681012 1.22e-04 22_[+2(7.93e-05)]_7_[+3(2.73e-05)]_\ 35 chrX:16629923-16630003 2.24e-01 80 chrIII:9277990-9278070 1.91e-02 16_[+4(3.42e-05)]_56 chrII:8438854-8438934 1.81e-01 80 chrV:6105605-6105685 3.22e-05 21_[+1(5.66e-05)]_27_[+3(2.73e-05)]_\ 16 chrIV:5940774-5940854 5.81e-02 80 chrI:9399750-9399830 3.15e-02 80 chrX:13003316-13003396 1.14e-02 80 chrIII:13381865-13381945 5.65e-04 23_[+2(6.26e-05)]_49 chrII:4876243-4876323 4.02e-04 54_[+1(1.47e-05)]_18 chrII:11020849-11020929 4.36e-05 4_[+4(3.42e-05)]_20_[+2(7.93e-05)]_\ 40 chrII:10523186-10523266 2.29e-02 48_[+1(7.88e-05)]_24 chrI:6867500-6867580 3.91e-02 80 chrIV:12429607-12429687 2.06e-01 80 chrI:14991804-14991884 2.08e-02 80 chrV:14633466-14633546 5.37e-02 80 chrIV:10350299-10350379 2.56e-01 80 chrI:9427083-9427163 6.40e-02 17_[+2(7.93e-05)]_55 chrII:8717725-8717805 9.02e-02 80 chrX:14903600-14903680 2.05e-01 80 chrI:10281874-10281954 1.27e-04 43_[+3(2.73e-05)]_29 chrIV:1547254-1547334 8.40e-01 80 chrII:158502-158582 8.30e-04 35_[+5(3.98e-06)]_37 chrX:16535383-16535463 5.82e-03 41_[+1(5.66e-05)]_31 chrX:3785546-3785626 3.08e-02 57_[+2(6.26e-05)]_15 chrIV:13884094-13884174 2.09e-03 51_[+2(2.53e-05)]_21 chrX:10228524-10228604 3.97e-04 11_[+1(2.36e-05)]_61 chrV:7066681-7066761 2.21e-01 80 chrV:13659318-13659398 5.82e-01 80 chrI:6333708-6333788 7.95e-01 80 chrIII:11742334-11742414 2.54e-04 22_[+1(1.47e-05)]_50 chrX:2212854-2212934 9.71e-03 58_[+2(2.53e-05)]_14 chrV:6354967-6355047 4.55e-02 80 chrI:9717519-9717599 2.60e-03 32_[+3(2.73e-05)]_40 chrX:16634275-16634355 5.81e-02 80 chrIII:9867932-9868012 2.79e-03 31_[+4(4.93e-05)]_41 chrIV:5858388-5858468 2.19e-04 27_[+4(3.42e-05)]_45 chrX:15772873-15772953 6.01e-03 55_[+4(3.42e-05)]_17 chrIII:6359344-6359424 3.29e-02 80 chrX:5339432-5339512 1.53e-02 36_[+1(1.47e-05)]_36 chrIV:9123171-9123251 1.09e-02 80 chrII:13167657-13167737 5.56e-04 39_[+1(8.88e-05)]_33 chrIII:8573993-8574073 1.35e-01 80 chrIII:3161768-3161848 4.69e-02 14_[+3(9.29e-05)]_58 chrX:3832637-3832717 2.31e-02 32_[+2(2.53e-05)]_40 chrX:7210626-7210706 1.62e-02 69_[+2(2.53e-05)]_3 chrX:10317739-10317819 1.04e-02 48_[+2(2.53e-05)]_9_[+2(2.53e-05)]_\ 7 chrV:9704038-9704118 1.52e-02 21_[+2(2.53e-05)]_51 chrIII:8709893-8709973 4.14e-03 29_[+3(9.29e-05)]_43 chrII:6714036-6714116 3.87e-04 38_[+4(3.42e-05)]_3_[+1(5.66e-05)]_\ 23 chrII:8226108-8226188 6.36e-05 36_[+5(2.34e-05)]_36 chrI:5661991-5662071 6.44e-02 80 chrX:433151-433231 2.96e-03 48_[+5(8.97e-05)]_24 chrV:8799548-8799628 2.48e-01 80 chrIV:1891733-1891813 1.40e-06 [+5(1.74e-05)]_72 chrI:8452273-8452353 3.56e-03 19_[+1(1.47e-05)]_53 chrI:6331958-6332038 2.24e-02 80 chrX:3958425-3958505 3.50e-02 12_[+2(2.53e-05)]_60 chrV:8207076-8207156 2.16e-02 7_[+3(2.73e-05)]_65 chrX:11461679-11461759 1.22e-02 68_[+2(6.26e-05)]_4 chrII:14627034-14627114 4.36e-02 14_[+2(2.53e-05)]_58 chrV:6353341-6353421 1.51e-03 80 chrIV:16192884-16192964 2.72e-05 37_[+2(2.53e-05)]_35 chrIV:9802835-9802915 2.34e-03 32_[+2(2.53e-05)]_40 chrX:8554167-8554247 3.02e-03 60_[+4(3.42e-05)]_12 chrX:12808594-12808674 7.10e-01 80 chrV:6302638-6302718 8.95e-01 80 chrIII:4187999-4188079 1.49e-02 59_[+2(2.53e-05)]_13 chrX:7057520-7057600 2.06e-02 26_[+2(2.53e-05)]_46 chrIV:4008524-4008604 5.58e-02 80 chrII:3030568-3030648 8.91e-03 48_[+1(1.47e-05)]_24 chrI:1096094-1096174 4.41e-02 32_[+1(5.66e-05)]_40 chrI:1564099-1564179 4.30e-03 39_[+4(3.42e-05)]_33 chrX:5854606-5854686 4.41e-03 11_[+3(9.29e-05)]_61 chrV:6699980-6700060 4.04e-04 43_[+5(3.05e-05)]_29 chrX:14709702-14709782 1.81e-02 80 chrX:14069684-14069764 4.26e-02 80 chrI:10403941-10404021 4.39e-02 80 chrX:7665516-7665596 2.05e-01 80 chrX:13009066-13009146 6.65e-02 20_[+1(5.66e-05)]_52 chrX:8004989-8005069 4.65e-02 80 chrIV:10329735-10329815 5.47e-02 2_[+4(3.42e-05)]_70 chrIII:6074095-6074175 2.96e-05 23_[+2(2.53e-05)]_49 chrX:6515442-6515522 2.25e-02 39_[+2(6.26e-05)]_33 chrI:5394795-5394875 3.97e-03 80 chrII:11953093-11953173 4.45e-03 28_[+2(2.53e-05)]_44 chrX:4809370-4809450 5.34e-03 29_[+2(9.79e-05)]_17_[+2(2.53e-05)]_\ 18 chrV:6737044-6737124 1.90e-04 23_[+1(1.47e-05)]_49 chrII:6178531-6178611 2.46e-02 80 chrV:20693818-20693898 3.04e-02 37_[+2(9.79e-05)]_12_[+2(6.26e-05)]_\ 15 chrII:7404204-7404284 1.26e-01 7_[+1(5.66e-05)]_65 chrV:9163225-9163305 5.73e-03 [+3(2.73e-05)]_31_[+3(2.73e-05)]_33 chrV:16357371-16357451 5.67e-02 17_[+3(9.29e-05)]_55 chrI:3916822-3916902 7.44e-03 17_[+1(1.47e-05)]_55 chrI:5782002-5782082 3.53e-02 72_[+2(7.93e-05)] chrII:2994684-2994764 2.52e-01 80 chrIII:4334960-4335040 5.75e-06 14_[+2(6.26e-05)]_58 chrV:4437356-4437436 7.19e-03 29_[+1(1.47e-05)]_43 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n05.farnam.hpc.yale.internal ********************************************************************************