******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/athp-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:6923943-6924023 1.0000 80 chrI:12040790-12040870 1.0000 80 chrIII:6141005-6141085 1.0000 80 chrII:7195521-7195601 1.0000 80 chrI:11970056-11970136 1.0000 80 chrIV:4085883-4085963 1.0000 80 chrII:8429317-8429397 1.0000 80 chrII:11860651-11860731 1.0000 80 chrIV:1496829-1496909 1.0000 80 chrI:1014538-1014618 1.0000 80 chrIII:10877731-10877811 1.0000 80 chrIV:13348789-13348869 1.0000 80 chrI:3931875-3931955 1.0000 80 chrV:15571195-15571275 1.0000 80 chrII:4604806-4604886 1.0000 80 chrI:13310772-13310852 1.0000 80 chrIV:7782386-7782466 1.0000 80 chrV:20267167-20267247 1.0000 80 chrI:12961909-12961989 1.0000 80 chrII:11241662-11241742 1.0000 80 chrII:8187597-8187677 1.0000 80 chrV:10343028-10343108 1.0000 80 chrV:1476560-1476640 1.0000 80 chrV:10019413-10019493 1.0000 80 chrIII:190988-191068 1.0000 80 chrV:1918135-1918215 1.0000 80 chrIII:10750159-10750239 1.0000 80 chrI:1872612-1872692 1.0000 80 chrIV:7800467-7800547 1.0000 80 chrIV:15011274-15011354 1.0000 80 chrI:11967857-11967937 1.0000 80 chrI:3198968-3199048 1.0000 80 chrII:11860877-11860957 1.0000 80 chrI:3866609-3866689 1.0000 80 chrIII:881535-881615 1.0000 80 chrIV:4047835-4047915 1.0000 80 chrI:7707397-7707477 1.0000 80 chrIV:2314276-2314356 1.0000 80 chrI:2623012-2623092 1.0000 80 chrIV:14953923-14954003 1.0000 80 chrIV:5650962-5651042 1.0000 80 chrI:1834960-1835040 1.0000 80 chrV:15184251-15184331 1.0000 80 chrIII:1508953-1509033 1.0000 80 chrIII:7736957-7737037 1.0000 80 chrII:14245031-14245111 1.0000 80 chrIV:7548379-7548459 1.0000 80 chrX:15193176-15193256 1.0000 80 chrIII:4216547-4216627 1.0000 80 chrII:9939006-9939086 1.0000 80 chrI:10436949-10437029 1.0000 80 chrII:7880553-7880633 1.0000 80 chrIV:12390073-12390153 1.0000 80 chrIII:4984871-4984951 1.0000 80 chrIII:12977777-12977857 1.0000 80 chrV:1815604-1815684 1.0000 80 chrIV:419892-419972 1.0000 80 chrIII:3902789-3902869 1.0000 80 chrIII:12429133-12429213 1.0000 80 chrIII:4489048-4489128 1.0000 80 chrII:4042899-4042979 1.0000 80 chrI:4765576-4765656 1.0000 80 chrIII:11869505-11869585 1.0000 80 chrIII:10881602-10881682 1.0000 80 chrII:12736794-12736874 1.0000 80 chrIII:7178686-7178766 1.0000 80 chrI:9690144-9690224 1.0000 80 chrV:8223594-8223674 1.0000 80 chrII:3056351-3056431 1.0000 80 chrII:11050869-11050949 1.0000 80 chrIII:13763947-13764027 1.0000 80 chrIII:7584366-7584446 1.0000 80 chrIII:9615190-9615270 1.0000 80 chrV:11558134-11558214 1.0000 80 chrIV:6974314-6974394 1.0000 80 chrIII:12052141-12052221 1.0000 80 chrV:10238247-10238327 1.0000 80 chrIII:4999118-4999198 1.0000 80 chrIII:10209844-10209924 1.0000 80 chrII:12209008-12209088 1.0000 80 chrIII:12496574-12496654 1.0000 80 chrIII:8129432-8129512 1.0000 80 chrIV:6421338-6421418 1.0000 80 chrII:12089003-12089083 1.0000 80 chrII:2504237-2504317 1.0000 80 chrI:6498251-6498331 1.0000 80 chrV:14991662-14991742 1.0000 80 chrIII:7329533-7329613 1.0000 80 chrI:2304306-2304386 1.0000 80 chrIV:6526657-6526737 1.0000 80 chrI:519946-520026 1.0000 80 chrIII:5882458-5882538 1.0000 80 chrI:7869001-7869081 1.0000 80 chrI:3934861-3934941 1.0000 80 chrV:6655382-6655462 1.0000 80 chrIII:6164646-6164726 1.0000 80 chrII:4696275-4696355 1.0000 80 chrV:2698961-2699041 1.0000 80 chrV:7733483-7733563 1.0000 80 chrI:6368070-6368150 1.0000 80 chrII:4858030-4858110 1.0000 80 chrIII:8013780-8013860 1.0000 80 chrII:6491333-6491413 1.0000 80 chrV:5717391-5717471 1.0000 80 chrIV:5366868-5366948 1.0000 80 chrII:8939070-8939150 1.0000 80 chrII:11968392-11968472 1.0000 80 chrII:13491663-13491743 1.0000 80 chrI:3909764-3909844 1.0000 80 chrIV:16482963-16483043 1.0000 80 chrIV:13035519-13035599 1.0000 80 chrII:12739519-12739599 1.0000 80 chrIV:2678296-2678376 1.0000 80 chrII:8684123-8684203 1.0000 80 chrIII:6959013-6959093 1.0000 80 chrIII:1603980-1604060 1.0000 80 chrIII:13692557-13692637 1.0000 80 chrV:5588102-5588182 1.0000 80 chrI:2317534-2317614 1.0000 80 chrII:13521471-13521551 1.0000 80 chrIV:7796855-7796935 1.0000 80 chrIV:5850966-5851046 1.0000 80 chrIII:13343766-13343846 1.0000 80 chrIII:2811648-2811728 1.0000 80 chrIV:12565868-12565948 1.0000 80 chrIII:4172426-4172506 1.0000 80 chrV:9689528-9689608 1.0000 80 chrIII:10876829-10876909 1.0000 80 chrI:10163659-10163739 1.0000 80 chrII:11651158-11651238 1.0000 80 chrV:4373852-4373932 1.0000 80 chrV:13312433-13312513 1.0000 80 chrIII:4176344-4176424 1.0000 80 chrIII:3390363-3390443 1.0000 80 chrIII:5557409-5557489 1.0000 80 chrIII:11580608-11580688 1.0000 80 chrII:12923371-12923451 1.0000 80 chrII:12672501-12672581 1.0000 80 chrIV:11820748-11820828 1.0000 80 chrIII:9462753-9462833 1.0000 80 chrII:4229285-4229365 1.0000 80 chrV:14013770-14013850 1.0000 80 chrIII:12607483-12607563 1.0000 80 chrIV:9778183-9778263 1.0000 80 chrI:6789445-6789525 1.0000 80 chrI:7701567-7701647 1.0000 80 chrV:4689332-4689412 1.0000 80 chrIV:17280208-17280288 1.0000 80 chrIV:12570665-12570745 1.0000 80 chrIII:9617086-9617166 1.0000 80 chrII:13724095-13724175 1.0000 80 chrIII:11245320-11245400 1.0000 80 chrI:8676622-8676702 1.0000 80 chrI:14758929-14759009 1.0000 80 chrI:12861939-12862019 1.0000 80 chrV:15083828-15083908 1.0000 80 chrI:6798264-6798344 1.0000 80 chrIII:1625814-1625894 1.0000 80 chrV:6783180-6783260 1.0000 80 chrV:6423-6503 1.0000 80 chrV:18085562-18085642 1.0000 80 chrI:9512371-9512451 1.0000 80 chrV:19430684-19430764 1.0000 80 chrII:11917693-11917773 1.0000 80 chrI:5158506-5158586 1.0000 80 chrIV:1277193-1277273 1.0000 80 chrI:6320338-6320418 1.0000 80 chrIII:7102008-7102088 1.0000 80 chrI:9177530-9177610 1.0000 80 chrI:3368656-3368736 1.0000 80 chrII:6358387-6358467 1.0000 80 chrIV:13782539-13782619 1.0000 80 chrII:9056363-9056443 1.0000 80 chrI:1153232-1153312 1.0000 80 chrIII:3699552-3699632 1.0000 80 chrIV:13510234-13510314 1.0000 80 chrI:134177-134257 1.0000 80 chrI:14718886-14718966 1.0000 80 chrI:7702659-7702739 1.0000 80 chrI:11177597-11177677 1.0000 80 chrII:11690946-11691026 1.0000 80 chrI:14476531-14476611 1.0000 80 chrII:11965008-11965088 1.0000 80 chrII:6736208-6736288 1.0000 80 chrV:13007044-13007124 1.0000 80 chrI:6855507-6855587 1.0000 80 chrIII:12499412-12499492 1.0000 80 chrIII:12225410-12225490 1.0000 80 chrIII:6210591-6210671 1.0000 80 chrIV:7397611-7397691 1.0000 80 chrII:2751504-2751584 1.0000 80 chrII:13494952-13495032 1.0000 80 chrIV:8752673-8752753 1.0000 80 chrII:12726900-12726980 1.0000 80 chrI:12491128-12491208 1.0000 80 chrIII:9782141-9782221 1.0000 80 chrIII:11694427-11694507 1.0000 80 chrII:4590781-4590861 1.0000 80 chrI:10553045-10553125 1.0000 80 chrII:10543220-10543300 1.0000 80 chrI:12040992-12041072 1.0000 80 chrV:15392811-15392891 1.0000 80 chrI:11745703-11745783 1.0000 80 chrII:12738549-12738629 1.0000 80 chrII:15004634-15004714 1.0000 80 chrI:10085797-10085877 1.0000 80 chrV:16356925-16357005 1.0000 80 chrI:13542696-13542776 1.0000 80 chrIV:14769438-14769518 1.0000 80 chrIV:17088998-17089078 1.0000 80 chrI:8022718-8022798 1.0000 80 chrV:1157539-1157619 1.0000 80 chrIII:5727935-5728015 1.0000 80 chrIV:13701640-13701720 1.0000 80 chrI:13658120-13658200 1.0000 80 chrII:3453696-3453776 1.0000 80 chrI:13953318-13953398 1.0000 80 chrI:4645489-4645569 1.0000 80 chrIV:5544918-5544998 1.0000 80 chrI:8109485-8109565 1.0000 80 chrIV:9318453-9318533 1.0000 80 chrI:3269161-3269241 1.0000 80 chrIV:1708625-1708705 1.0000 80 chrIII:10881869-10881949 1.0000 80 chrIV:5541442-5541522 1.0000 80 chrIV:14658230-14658310 1.0000 80 chrII:8015508-8015588 1.0000 80 chrI:12528110-12528190 1.0000 80 chrI:9271223-9271303 1.0000 80 chrI:9364012-9364092 1.0000 80 chrV:5592057-5592137 1.0000 80 chrIV:2766412-2766492 1.0000 80 chrIV:3296921-3297001 1.0000 80 chrIV:11528059-11528139 1.0000 80 chrII:2030575-2030655 1.0000 80 chrIV:7782592-7782672 1.0000 80 chrIV:8188779-8188859 1.0000 80 chrII:7863746-7863826 1.0000 80 chrIII:6123879-6123959 1.0000 80 chrV:14422478-14422558 1.0000 80 chrII:5377579-5377659 1.0000 80 chrII:8285720-8285800 1.0000 80 chrII:11880571-11880651 1.0000 80 chrIV:2891646-2891726 1.0000 80 chrI:12537698-12537778 1.0000 80 chrI:9787989-9788069 1.0000 80 chrIII:5446564-5446644 1.0000 80 chrI:5274307-5274387 1.0000 80 chrV:9327007-9327087 1.0000 80 chrI:4759694-4759774 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_athp-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/athp-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.301 C 0.202 G 0.203 T 0.294 Background letter frequencies (from file dataset with add-one prior applied): A 0.301 C 0.202 G 0.203 T 0.294 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF STACHGTA MEME-1 width = 8 sites = 42 llr = 354 E-value = 1.3e-011 ******************************************************************************** -------------------------------------------------------------------------------- Motif STACHGTA MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::a:2::a pos.-specific C 5::a4::: probability G 3:::2a:: matrix T 2a::2:a: bits 2.3 * * 2.1 * * 1.8 * * ** 1.6 *** *** Relative 1.4 *** *** Entropy 1.2 *** *** (12.2 bits) 0.9 *** *** 0.7 *** *** 0.5 **** *** 0.2 **** *** 0.0 -------- Multilevel CTACCGTA consensus G A sequence T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STACHGTA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:3453696-3453776 34 1.31e-05 ACTTCATAGT CTACCGTA GTTTTCAGCT chrII:11968392-11968472 44 1.31e-05 CTCACCACGA CTACCGTA GCCCGTGGAG chrII:2504237-2504317 28 1.31e-05 actttcggag ctaccgta acccgagaaa chrII:12089003-12089083 9 1.31e-05 AACAAGAT CTACCGTA CTCTTCAATT chrI:11967857-11967937 59 1.31e-05 ACTTTGACAT CTACCGTA GACTTGGAAA chrII:11241662-11241742 27 1.31e-05 aattttTCAG CTACCGTA CTCGCAATTA chrI:12961909-12961989 25 1.31e-05 ACTCCGAGAA CTACCGTA GTTTCGGAAA chrI:13310772-13310852 27 1.31e-05 AATTTCAACT CTACCGTA GCCCGGTTAC chrI:11970056-11970136 12 1.31e-05 TACTTTTCAA CTACCGTA GTTAGCTTTT chrIV:9778183-9778263 5 2.63e-05 TTGT GTACCGTA CTCCTGTTGT chrII:5377579-5377659 16 7.80e-05 AACTGTCCAA CTACGGTA GTTTTCAAAA chrI:9364012-9364092 26 7.80e-05 ATAATCTTCG CTACAGTA CCCCGTTTTC chrIII:7102008-7102088 33 7.80e-05 AAAAGATCAT CTACAGTA ATCACCCAGC chrI:9512371-9512451 45 7.80e-05 AAATTGTTGA CTACGGTA ATCCATCCGA chrV:18085562-18085642 66 7.80e-05 ACTTCGCCGA CTACAGTA CTCCAAC chrII:12739519-12739599 13 7.80e-05 ATTTTCCTGG CTACTGTA GTTCACAAAA chrII:6491333-6491413 72 7.80e-05 ATTACTTCAA CTACTGTA C chrIV:6421338-6421418 35 7.80e-05 CCTTAAAATT CTACAGTA CTTTATTTCA chrIII:10881602-10881682 18 7.80e-05 AAAATTAAAA CTACAGTA CACTTTGTTC chrV:15184251-15184331 2 7.80e-05 T CTACAGTA GTATGAGAGC chrII:11860651-11860731 65 7.80e-05 ACTTCACCAA CTACAGTA TCCTTTCC chrII:2030575-2030655 68 9.71e-05 TCTATGTTGC TTACCGTA CTTGG chrI:8109485-8109565 62 9.71e-05 gcgctgggtt ttaccgta ttgcagccga chrI:3931875-3931955 41 9.71e-05 ACATTATCTT TTACCGTA CCTTTGATCT chrIII:10877731-10877811 56 9.71e-05 GCCTTTAAGA TTACCGTA GCCAGCTTTT chrII:8015508-8015588 53 1.49e-04 ATAATTTTCA GTACGGTA TGCGGGAAAA chrIII:3390363-3390443 52 1.49e-04 TCGAATTTTC GTACTGTA AACTTAAAGG chrIII:6959013-6959093 4 1.49e-04 TTA GTACGGTA GAAAGTCGCT chrI:519946-520026 70 1.49e-04 GCGCGCCGAA GTACGGTA GGT chrII:11050869-11050949 60 1.49e-04 cctttgaaga gtactgta gtttcaaact chrII:3056351-3056431 71 1.49e-04 CCTTTAAAAA GTACTGTA GC chrIII:4216547-4216627 62 1.49e-04 AGTAGTAGTA GTACTGTA TCCTCGAGAA chrII:4604806-4604886 73 1.49e-04 TTTTTGTAGG Gtactgta chrII:8429317-8429397 46 1.49e-04 cctttaaaca gtactgta gtttcgaatg chrI:12040790-12040870 38 1.49e-04 CTTGTTGCAC GTACGGTA TGGTGTTTTA chrIII:5727935-5728015 18 2.24e-04 TTCGCAACGA TTACAGTA CCCCACTGAA chrI:13542696-13542776 72 2.24e-04 CCTTAAAATG TTACTGTA G chrV:5717391-5717471 66 2.24e-04 GTGCAGGTTC TTACAGTA ACCCGTT chrIV:1496829-1496909 30 2.24e-04 AGTTTCAAGG TTACTGTA GAACATTTTG chrIII:6141005-6141085 26 2.24e-04 CAGAATAGGA TTACGGTA CAAGAAAATC chrII:7880553-7880633 33 2.44e-04 TGCGCCTTTA ATACCGTA TCCTCTTCAC chrIII:4489048-4489128 10 3.21e-04 TTTAATTTT ATACAGTA CACGAGTGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STACHGTA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:3453696-3453776 1.3e-05 33_[+1]_39 chrII:11968392-11968472 1.3e-05 43_[+1]_29 chrII:2504237-2504317 1.3e-05 27_[+1]_45 chrII:12089003-12089083 1.3e-05 8_[+1]_64 chrI:11967857-11967937 1.3e-05 58_[+1]_14 chrII:11241662-11241742 1.3e-05 26_[+1]_46 chrI:12961909-12961989 1.3e-05 24_[+1]_48 chrI:13310772-13310852 1.3e-05 26_[+1]_46 chrI:11970056-11970136 1.3e-05 11_[+1]_61 chrIV:9778183-9778263 2.6e-05 4_[+1]_68 chrII:5377579-5377659 7.8e-05 15_[+1]_57 chrI:9364012-9364092 7.8e-05 25_[+1]_47 chrIII:7102008-7102088 7.8e-05 32_[+1]_40 chrI:9512371-9512451 7.8e-05 44_[+1]_28 chrV:18085562-18085642 7.8e-05 65_[+1]_7 chrII:12739519-12739599 7.8e-05 12_[+1]_60 chrII:6491333-6491413 7.8e-05 71_[+1]_1 chrIV:6421338-6421418 7.8e-05 34_[+1]_38 chrIII:10881602-10881682 7.8e-05 17_[+1]_55 chrV:15184251-15184331 7.8e-05 1_[+1]_71 chrII:11860651-11860731 7.8e-05 64_[+1]_8 chrII:2030575-2030655 9.7e-05 67_[+1]_5 chrI:8109485-8109565 9.7e-05 61_[+1]_11 chrI:3931875-3931955 9.7e-05 40_[+1]_32 chrIII:10877731-10877811 9.7e-05 55_[+1]_17 chrII:8015508-8015588 0.00015 52_[+1]_20 chrIII:3390363-3390443 0.00015 51_[+1]_21 chrIII:6959013-6959093 0.00015 3_[+1]_69 chrI:519946-520026 0.00015 69_[+1]_3 chrII:11050869-11050949 0.00015 59_[+1]_13 chrII:3056351-3056431 0.00015 70_[+1]_2 chrIII:4216547-4216627 0.00015 61_[+1]_11 chrII:4604806-4604886 0.00015 72_[+1] chrII:8429317-8429397 0.00015 45_[+1]_27 chrI:12040790-12040870 0.00015 37_[+1]_35 chrIII:5727935-5728015 0.00022 17_[+1]_55 chrI:13542696-13542776 0.00022 71_[+1]_1 chrV:5717391-5717471 0.00022 65_[+1]_7 chrIV:1496829-1496909 0.00022 29_[+1]_43 chrIII:6141005-6141085 0.00022 25_[+1]_47 chrII:7880553-7880633 0.00024 32_[+1]_40 chrIII:4489048-4489128 0.00032 9_[+1]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STACHGTA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF STACHGTA width=8 seqs=42 chrII:3453696-3453776 ( 34) CTACCGTA 1 chrII:11968392-11968472 ( 44) CTACCGTA 1 chrII:2504237-2504317 ( 28) CTACCGTA 1 chrII:12089003-12089083 ( 9) CTACCGTA 1 chrI:11967857-11967937 ( 59) CTACCGTA 1 chrII:11241662-11241742 ( 27) CTACCGTA 1 chrI:12961909-12961989 ( 25) CTACCGTA 1 chrI:13310772-13310852 ( 27) CTACCGTA 1 chrI:11970056-11970136 ( 12) CTACCGTA 1 chrIV:9778183-9778263 ( 5) GTACCGTA 1 chrII:5377579-5377659 ( 16) CTACGGTA 1 chrI:9364012-9364092 ( 26) CTACAGTA 1 chrIII:7102008-7102088 ( 33) CTACAGTA 1 chrI:9512371-9512451 ( 45) CTACGGTA 1 chrV:18085562-18085642 ( 66) CTACAGTA 1 chrII:12739519-12739599 ( 13) CTACTGTA 1 chrII:6491333-6491413 ( 72) CTACTGTA 1 chrIV:6421338-6421418 ( 35) CTACAGTA 1 chrIII:10881602-10881682 ( 18) CTACAGTA 1 chrV:15184251-15184331 ( 2) CTACAGTA 1 chrII:11860651-11860731 ( 65) CTACAGTA 1 chrII:2030575-2030655 ( 68) TTACCGTA 1 chrI:8109485-8109565 ( 62) TTACCGTA 1 chrI:3931875-3931955 ( 41) TTACCGTA 1 chrIII:10877731-10877811 ( 56) TTACCGTA 1 chrII:8015508-8015588 ( 53) GTACGGTA 1 chrIII:3390363-3390443 ( 52) GTACTGTA 1 chrIII:6959013-6959093 ( 4) GTACGGTA 1 chrI:519946-520026 ( 70) GTACGGTA 1 chrII:11050869-11050949 ( 60) GTACTGTA 1 chrII:3056351-3056431 ( 71) GTACTGTA 1 chrIII:4216547-4216627 ( 62) GTACTGTA 1 chrII:4604806-4604886 ( 73) GTACTGTA 1 chrII:8429317-8429397 ( 46) GTACTGTA 1 chrI:12040790-12040870 ( 38) GTACGGTA 1 chrIII:5727935-5728015 ( 18) TTACAGTA 1 chrI:13542696-13542776 ( 72) TTACTGTA 1 chrV:5717391-5717471 ( 66) TTACAGTA 1 chrIV:1496829-1496909 ( 30) TTACTGTA 1 chrIII:6141005-6141085 ( 26) TTACGGTA 1 chrII:7880553-7880633 ( 33) ATACCGTA 1 chrIII:4489048-4489128 ( 10) ATACAGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STACHGTA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.06546 E= 1.3e-011 -266 124 37 -46 -1204 -1204 -1204 176 173 -1204 -1204 -1204 -1204 231 -1204 -1204 -34 83 -28 -31 -1204 -1204 230 -1204 -1204 -1204 -1204 176 173 -1204 -1204 -1204 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STACHGTA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 1.3e-011 0.047619 0.476190 0.261905 0.214286 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.238095 0.357143 0.166667 0.238095 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif STACHGTA MEME-1 regular expression -------------------------------------------------------------------------------- [CGT]TAC[CAT]GTA -------------------------------------------------------------------------------- Time 5.05 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTTTTT MEME-2 width = 8 sites = 53 llr = 396 E-value = 7.8e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::2 pos.-specific C ::::::3: probability G :3::::12 matrix T 97aaaa67 bits 2.3 2.1 1.8 **** 1.6 **** Relative 1.4 * **** Entropy 1.2 * **** (10.8 bits) 0.9 ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTTT consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:8188779-8188859 34 5.58e-05 CACAGAACCA TTTTTTTT GCTATTTATT chrIV:3296921-3297001 65 5.58e-05 CCCCGTTAAT TTTTTTTT CTCAGTTT chrII:3453696-3453776 51 5.58e-05 AGTTTTCAGC TTTTTTTT GGTTTTTTTA chrIV:17088998-17089078 72 5.58e-05 AAAATCCACG TTTTTTTT C chrII:12726900-12726980 24 5.58e-05 CCTATTCCGC TTTTTTTT CCAAATTCCC chrIII:11245320-11245400 63 5.58e-05 TGCGTGAGTT TTTTTTTT TGGGTAAAAA chrII:13724095-13724175 34 5.58e-05 GTAAAATCGT TTTTTTTT CAGCAATTTT chrII:12923371-12923451 71 5.58e-05 GTTCAAGAAA TTTTTTTT TG chrIII:2811648-2811728 17 5.58e-05 AAAGTTTCCT TTTTTTTT GCTGTTTTAT chrII:8684123-8684203 71 5.58e-05 ttttttgttt tttttttt ag chrIV:4047835-4047915 58 5.58e-05 TCGCGGCTTT TTTTTTTT TCATGATTAC chrIII:10750159-10750239 6 5.58e-05 ATTAT TTTTTTTT CTTTAAAAAG chrV:20267167-20267247 62 5.58e-05 CCGTCTTCCA TTTTTTTT GTGCTAAACT chrV:15571195-15571275 35 5.58e-05 CCAAATTTGT TTTTTTTT TCGAAATGTT chrIII:10877731-10877811 70 5.58e-05 CGTAGCCAGC TTTTTTTT GCA chrIV:1496829-1496909 48 5.58e-05 GAACATTTTG TTTTTTTT TGTGTTTTCC chrIV:14769438-14769518 67 1.33e-04 TGTGCGACGT TGTTTTTT GCAAAA chrIII:11694427-11694507 29 1.33e-04 AACATTGTTT TGTTTTTT CTTAAAAATG chrI:14476531-14476611 21 1.33e-04 GTATTATTGA TTTTTTCT CTAAAAATTC chrIV:12565868-12565948 28 1.33e-04 TCCATCTGTG TGTTTTTT GAGTTTTTCC chrV:1815604-1815684 23 1.33e-04 ACGAGCGAAA TTTTTTCT CAAAAATCAG chrIII:7736957-7737037 37 1.33e-04 CATCTTCTGC TGTTTTTT ATTTATTAAG chrII:7195521-7195601 44 1.33e-04 CATGTTTTAA TGTTTTTT ACATCTGAAT chrIII:6123879-6123959 59 1.59e-04 CTCTCAACGT TGTTTTCT CTATTTTCTC chrIV:2766412-2766492 24 1.59e-04 ATAGGCAATA TGTTTTCT GCGGGGTGTG chrV:15392811-15392891 67 1.59e-04 cgttgaagcg tgttttct cttccA chrI:3909764-3909844 18 1.59e-04 GTGCTTCCCG TGTTTTCT TGGCTTCATC chrIV:5650962-5651042 61 1.59e-04 CAAGTCCCCC TGTTTTCT GTGTTAAATT chrI:12528110-12528190 42 1.98e-04 AGTTTATTGA TTTTTTTG CGGATTTTTC chrII:4590781-4590861 55 1.98e-04 ACTTTTTCAA TTTTTTTG CGCATTTTCC chrI:12961909-12961989 44 1.98e-04 TTTCGGAAAC TTTTTTTG AAACGGCTAA chrV:9327007-9327087 14 2.89e-04 GAATGGCCCA TTTTTTGT CCTATTCGCC chrII:6358387-6358467 60 2.89e-04 GCTTTTTTAA TTTTTTCG GTAGTAAAAG chrIV:1277193-1277273 2 2.89e-04 A TTTTTTCG CAAAAAAACT chrII:12672501-12672581 23 2.89e-04 aatgcgggaa ttttttcg ccaaaaaaat chrII:12739519-12739599 72 2.89e-04 ACGCGCATAG TTTTTTGT T chrV:14991662-14991742 69 2.89e-04 TTATTGTTTC TTTTTTGT AAAC chrII:4604806-4604886 46 2.89e-04 TTCCCGAAAC TTTTTTGT TTTAAAACAT chrII:8429317-8429397 66 2.89e-04 ttcgaatgtg tgtttttg cggactt chrI:12040790-12040870 12 2.89e-04 CATAAAAACT TGTTTTTG ACCATAAGCT chrII:5377579-5377659 73 3.47e-04 GACCTGAACA TTTTTTTA chrIII:12429133-12429213 56 3.47e-04 AATAATTTAC TTTTTTTA AAGACATATT chrI:13542696-13542776 1 4.70e-04 . TGTTTTTA AAAATCAATA chrIII:3699552-3699632 66 4.70e-04 AGGAACACTC TTTTTTCA GCGGCCA chrI:6320338-6320418 30 4.70e-04 TATTGGTTGT TGTTTTTA TTTATATTCG chrI:6368070-6368150 18 4.70e-04 TAGCCTTGAC TGTTTTTA AATCTATAGC chrII:12209008-12209088 43 4.70e-04 TGAAAATTCC TTTTTTCA GAATATCTCG chrIV:2678296-2678376 52 4.97e-04 CACTTTTAGA TTTTTTGG GGGTATTACA chrIII:3902789-3902869 46 4.97e-04 AGAGAAAAAG TTTTTTGG GGAGCGCAGA chrIII:12499412-12499492 33 5.24e-04 TCAATTCACG TGTTTTCA CACACGACAC chrIII:7584366-7584446 21 7.00e-04 TTTAGTTCTT CGTTTTTT AAAGAGAAAA chrV:15184251-15184331 59 7.00e-04 GCGCCGCACG CTTTTTCT GCAACCACGC chrII:8939070-8939150 2 9.44e-04 C ATTTTTCT GCTGAATGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:8188779-8188859 5.6e-05 33_[+2]_39 chrIV:3296921-3297001 5.6e-05 64_[+2]_8 chrII:3453696-3453776 5.6e-05 50_[+2]_22 chrIV:17088998-17089078 5.6e-05 71_[+2]_1 chrII:12726900-12726980 5.6e-05 23_[+2]_49 chrIII:11245320-11245400 5.6e-05 62_[+2]_10 chrII:13724095-13724175 5.6e-05 33_[+2]_39 chrII:12923371-12923451 5.6e-05 70_[+2]_2 chrIII:2811648-2811728 5.6e-05 16_[+2]_56 chrII:8684123-8684203 5.6e-05 70_[+2]_2 chrIV:4047835-4047915 5.6e-05 57_[+2]_15 chrIII:10750159-10750239 5.6e-05 5_[+2]_67 chrV:20267167-20267247 5.6e-05 61_[+2]_11 chrV:15571195-15571275 5.6e-05 34_[+2]_38 chrIII:10877731-10877811 5.6e-05 69_[+2]_3 chrIV:1496829-1496909 5.6e-05 47_[+2]_25 chrIV:14769438-14769518 0.00013 66_[+2]_6 chrIII:11694427-11694507 0.00013 28_[+2]_44 chrI:14476531-14476611 0.00013 20_[+2]_52 chrIV:12565868-12565948 0.00013 27_[+2]_45 chrV:1815604-1815684 0.00013 22_[+2]_50 chrIII:7736957-7737037 0.00013 36_[+2]_36 chrII:7195521-7195601 0.00013 43_[+2]_29 chrIII:6123879-6123959 0.00016 58_[+2]_14 chrIV:2766412-2766492 0.00016 23_[+2]_49 chrV:15392811-15392891 0.00016 66_[+2]_6 chrI:3909764-3909844 0.00016 17_[+2]_55 chrIV:5650962-5651042 0.00016 60_[+2]_12 chrI:12528110-12528190 0.0002 41_[+2]_31 chrII:4590781-4590861 0.0002 54_[+2]_18 chrI:12961909-12961989 0.0002 43_[+2]_29 chrV:9327007-9327087 0.00029 13_[+2]_59 chrII:6358387-6358467 0.00029 59_[+2]_13 chrIV:1277193-1277273 0.00029 1_[+2]_71 chrII:12672501-12672581 0.00029 22_[+2]_50 chrII:12739519-12739599 0.00029 71_[+2]_1 chrV:14991662-14991742 0.00029 68_[+2]_4 chrII:4604806-4604886 0.00029 45_[+2]_27 chrII:8429317-8429397 0.00029 65_[+2]_7 chrI:12040790-12040870 0.00029 11_[+2]_61 chrII:5377579-5377659 0.00035 72_[+2] chrIII:12429133-12429213 0.00035 55_[+2]_17 chrI:13542696-13542776 0.00047 [+2]_72 chrIII:3699552-3699632 0.00047 65_[+2]_7 chrI:6320338-6320418 0.00047 29_[+2]_43 chrI:6368070-6368150 0.00047 17_[+2]_55 chrII:12209008-12209088 0.00047 42_[+2]_30 chrIV:2678296-2678376 0.0005 51_[+2]_21 chrIII:3902789-3902869 0.0005 45_[+2]_27 chrIII:12499412-12499492 0.00052 32_[+2]_40 chrIII:7584366-7584446 0.0007 20_[+2]_52 chrV:15184251-15184331 0.0007 58_[+2]_14 chrII:8939070-8939150 0.00094 1_[+2]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTTTT width=8 seqs=53 chrIV:8188779-8188859 ( 34) TTTTTTTT 1 chrIV:3296921-3297001 ( 65) TTTTTTTT 1 chrII:3453696-3453776 ( 51) TTTTTTTT 1 chrIV:17088998-17089078 ( 72) TTTTTTTT 1 chrII:12726900-12726980 ( 24) TTTTTTTT 1 chrIII:11245320-11245400 ( 63) TTTTTTTT 1 chrII:13724095-13724175 ( 34) TTTTTTTT 1 chrII:12923371-12923451 ( 71) TTTTTTTT 1 chrIII:2811648-2811728 ( 17) TTTTTTTT 1 chrII:8684123-8684203 ( 71) TTTTTTTT 1 chrIV:4047835-4047915 ( 58) TTTTTTTT 1 chrIII:10750159-10750239 ( 6) TTTTTTTT 1 chrV:20267167-20267247 ( 62) TTTTTTTT 1 chrV:15571195-15571275 ( 35) TTTTTTTT 1 chrIII:10877731-10877811 ( 70) TTTTTTTT 1 chrIV:1496829-1496909 ( 48) TTTTTTTT 1 chrIV:14769438-14769518 ( 67) TGTTTTTT 1 chrIII:11694427-11694507 ( 29) TGTTTTTT 1 chrI:14476531-14476611 ( 21) TTTTTTCT 1 chrIV:12565868-12565948 ( 28) TGTTTTTT 1 chrV:1815604-1815684 ( 23) TTTTTTCT 1 chrIII:7736957-7737037 ( 37) TGTTTTTT 1 chrII:7195521-7195601 ( 44) TGTTTTTT 1 chrIII:6123879-6123959 ( 59) TGTTTTCT 1 chrIV:2766412-2766492 ( 24) TGTTTTCT 1 chrV:15392811-15392891 ( 67) TGTTTTCT 1 chrI:3909764-3909844 ( 18) TGTTTTCT 1 chrIV:5650962-5651042 ( 61) TGTTTTCT 1 chrI:12528110-12528190 ( 42) TTTTTTTG 1 chrII:4590781-4590861 ( 55) TTTTTTTG 1 chrI:12961909-12961989 ( 44) TTTTTTTG 1 chrV:9327007-9327087 ( 14) TTTTTTGT 1 chrII:6358387-6358467 ( 60) TTTTTTCG 1 chrIV:1277193-1277273 ( 2) TTTTTTCG 1 chrII:12672501-12672581 ( 23) TTTTTTCG 1 chrII:12739519-12739599 ( 72) TTTTTTGT 1 chrV:14991662-14991742 ( 69) TTTTTTGT 1 chrII:4604806-4604886 ( 46) TTTTTTGT 1 chrII:8429317-8429397 ( 66) TGTTTTTG 1 chrI:12040790-12040870 ( 12) TGTTTTTG 1 chrII:5377579-5377659 ( 73) TTTTTTTA 1 chrIII:12429133-12429213 ( 56) TTTTTTTA 1 chrI:13542696-13542776 ( 1) TGTTTTTA 1 chrIII:3699552-3699632 ( 66) TTTTTTCA 1 chrI:6320338-6320418 ( 30) TGTTTTTA 1 chrI:6368070-6368150 ( 18) TGTTTTTA 1 chrII:12209008-12209088 ( 43) TTTTTTCA 1 chrIV:2678296-2678376 ( 52) TTTTTTGG 1 chrIII:3902789-3902869 ( 46) TTTTTTGG 1 chrIII:12499412-12499492 ( 33) TGTTTTCA 1 chrIII:7584366-7584446 ( 21) CGTTTTTT 1 chrV:15184251-15184331 ( 59) CTTTTTCT 1 chrII:8939070-8939150 ( 2) ATTTTTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.60532 E= 7.8e-001 -399 -242 -1237 168 -1237 -1237 66 121 -1237 -1237 -1237 176 -1237 -1237 -1237 176 -1237 -1237 -1237 176 -1237 -1237 -1237 176 -1237 49 -84 104 -100 -1237 -10 116 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 53 E= 7.8e-001 0.018868 0.037736 0.000000 0.943396 0.000000 0.000000 0.320755 0.679245 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.283019 0.113208 0.603774 0.150943 0.000000 0.188679 0.660377 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTT MEME-2 regular expression -------------------------------------------------------------------------------- T[TG]TTTT[TC]T -------------------------------------------------------------------------------- Time 10.40 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCSTTT MEME-3 width = 8 sites = 17 llr = 162 E-value = 3.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCSTTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::1::: pos.-specific C 1a296::: probability G 9:813::: matrix T :::::aaa bits 2.3 * 2.1 * 1.8 ** * *** 1.6 **** *** Relative 1.4 **** *** Entropy 1.2 **** *** (13.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGCCTTT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCSTTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:4229285-4229365 41 8.63e-06 TACCAGCCAT GCGCCTTT AAACAAGTTA chrII:11050869-11050949 47 8.63e-06 aaacaggtgt gcgccttt gaagagtact chrII:3056351-3056431 58 8.63e-06 AAAGAGGCCT GCGCCTTT AAAAAGTACT chrII:7880553-7880633 24 8.63e-06 ATGCAGCCAT GCGCCTTT AATACCGTAT chrV:15571195-15571275 59 8.63e-06 TGTTTTTAAA GCGCCTTT CGCCGTTTTG chrIII:10877731-10877811 44 8.63e-06 ATTCCGCTGT GCGCCTTT AAGATTACCG chrII:9939006-9939086 22 1.73e-05 ATTTGTGCGC GCGCGTTT AAAAAAAAAC chrV:1918135-1918215 63 1.73e-05 GTGCGGAGGA GCGCGTTT GCTGTGAGAA chrV:9327007-9327087 29 2.59e-05 TGTCCTATTC GCCCCTTT CCCCGACCAT chrII:8429317-8429397 33 2.59e-05 aaaagggcat gccccttt aaacagtact chrIV:5541442-5541522 29 3.88e-05 AGCACTGCTG GCGCATTT CGAGTGTCAC chrII:13724095-13724175 64 3.88e-05 GGCTAAACTG GCGCATTT CGCTGAAAT chrII:6358387-6358467 47 5.60e-05 CTTGACCACA GCGGCTTT TTTAATTTTT chrIV:4047835-4047915 50 5.60e-05 CGGTCGCTTC GCGGCTTT TTTTTTTTTC chrV:4689332-4689412 50 6.47e-05 CCATCTGGCC GCCCGTTT CGTCGGCGGA chrI:5274307-5274387 1 8.20e-05 . CCGCGTTT TATTTACGAA chrIII:5557409-5557489 53 8.20e-05 CTTCTCGTTC CCGCGTTT TTGAAAGTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCSTTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:4229285-4229365 8.6e-06 40_[+3]_32 chrII:11050869-11050949 8.6e-06 46_[+3]_26 chrII:3056351-3056431 8.6e-06 57_[+3]_15 chrII:7880553-7880633 8.6e-06 23_[+3]_49 chrV:15571195-15571275 8.6e-06 58_[+3]_14 chrIII:10877731-10877811 8.6e-06 43_[+3]_29 chrII:9939006-9939086 1.7e-05 21_[+3]_51 chrV:1918135-1918215 1.7e-05 62_[+3]_10 chrV:9327007-9327087 2.6e-05 28_[+3]_44 chrII:8429317-8429397 2.6e-05 32_[+3]_40 chrIV:5541442-5541522 3.9e-05 28_[+3]_44 chrII:13724095-13724175 3.9e-05 63_[+3]_9 chrII:6358387-6358467 5.6e-05 46_[+3]_26 chrIV:4047835-4047915 5.6e-05 49_[+3]_23 chrV:4689332-4689412 6.5e-05 49_[+3]_23 chrI:5274307-5274387 8.2e-05 [+3]_72 chrIII:5557409-5557489 8.2e-05 52_[+3]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCSTTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCSTTT width=8 seqs=17 chrII:4229285-4229365 ( 41) GCGCCTTT 1 chrII:11050869-11050949 ( 47) GCGCCTTT 1 chrII:3056351-3056431 ( 58) GCGCCTTT 1 chrII:7880553-7880633 ( 24) GCGCCTTT 1 chrV:15571195-15571275 ( 59) GCGCCTTT 1 chrIII:10877731-10877811 ( 44) GCGCCTTT 1 chrII:9939006-9939086 ( 22) GCGCGTTT 1 chrV:1918135-1918215 ( 63) GCGCGTTT 1 chrV:9327007-9327087 ( 29) GCCCCTTT 1 chrII:8429317-8429397 ( 33) GCCCCTTT 1 chrIV:5541442-5541522 ( 29) GCGCATTT 1 chrII:13724095-13724175 ( 64) GCGCATTT 1 chrII:6358387-6358467 ( 47) GCGGCTTT 1 chrIV:4047835-4047915 ( 50) GCGGCTTT 1 chrV:4689332-4689412 ( 50) GCCCGTTT 1 chrI:5274307-5274387 ( 1) CCGCGTTT 1 chrIII:5557409-5557489 ( 53) CCGCGTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCSTTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1364 E= 3.1e+000 -1073 -78 212 -1073 -1073 231 -1073 -1073 -1073 -19 202 -1073 -1073 213 -78 -1073 -136 154 54 -1073 -1073 -1073 -1073 176 -1073 -1073 -1073 176 -1073 -1073 -1073 176 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCSTTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 3.1e+000 0.000000 0.117647 0.882353 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.176471 0.823529 0.000000 0.000000 0.882353 0.117647 0.000000 0.117647 0.588235 0.294118 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCSTTT MEME-3 regular expression -------------------------------------------------------------------------------- GCGC[CG]TTT -------------------------------------------------------------------------------- Time 13.96 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAKGCGC MEME-4 width = 8 sites = 31 llr = 260 E-value = 3.1e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAKGCGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 99a:1:2: pos.-specific C 1::::a:a probability G :1:46:8: matrix T :::52::: bits 2.3 * * 2.1 * * 1.8 * * 1.6 * *** Relative 1.4 ** *** Entropy 1.2 *** *** (12.1 bits) 0.9 **** *** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAATGCGC consensus GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAKGCGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:3269161-3269241 37 9.31e-06 CCCTTTGTTT AAAGGCGC AGAGGTTAAG chrIV:13701640-13701720 42 9.31e-06 CGCAGTTGGT AAAGGCGC TAGTTTCATT chrIII:3390363-3390443 65 9.31e-06 CTGTAAACTT AAAGGCGC ATACACAG chrII:14245031-14245111 6 9.31e-06 GCCTT AAAGGCGC ATGCTCTGAG chrII:8015508-8015588 22 2.28e-05 CAATAAATGC AAATGCGC CCCACCGCAC chrI:12491128-12491208 25 2.28e-05 TGCACTGTGC AAATGCGC TCCAATGAGA chrIV:6421338-6421418 18 2.28e-05 CTTAACGTCG AAATGCGC CTTAAAATTC chrIV:7548379-7548459 57 2.28e-05 AAAGTCAAAA AAATGCGC GAGCGTGTTT chrIII:6959013-6959093 13 3.63e-05 AGTACGGTAG AAAGTCGC TAGAAGATAT chrIV:13348789-13348869 24 3.63e-05 GATGTGACGA AAAGTCGC GTCCTATTCA chrII:7863746-7863826 72 5.58e-05 tcgcagagcg aaattcgc c chrV:16356925-16357005 40 5.58e-05 AATAAAAAAC AAATTCGC AAGCGTGCTC chrIII:4172426-4172506 52 5.58e-05 AAGTTGGAGG AAATTCGC ACAGAAAAAA chrI:519946-520026 11 5.58e-05 ACAGGTCGAG AAATTCGC AAATTTTCGA chrIV:15011274-15011354 39 5.58e-05 AAAAGCAACA AAATTCGC TGAAAACGGA chrIII:5727935-5728015 42 6.20e-05 TGAAAATTTT CAAGGCGC GATTATGATT chrIII:10881602-10881682 35 6.20e-05 ACACTTTGTT CAAGGCGC ATGTGCCGTT chrI:13542696-13542776 55 7.11e-05 AAATTTCGAG CAATGCGC CTTAAAATGT chrII:8285720-8285800 69 8.49e-05 ACTTCAGTTG AAAGGCAC ACCT chrIV:7796855-7796935 7 8.49e-05 ACATTT AAAGGCAC ATAACTAAAC chrII:6491333-6491413 25 8.49e-05 AAAAATATTT AAAGGCAC ATGGTATTAT chrIII:11694427-11694507 58 1.05e-04 TATTCCTAGT AAATGCAC AAACCAAATT chrII:11860651-11860731 29 1.05e-04 GCGTCGAATA AAATGCAC TACGCAAGTT chrII:11968392-11968472 3 1.25e-04 TC AAAGACGC AGCCACAAAA chrI:3198968-3199048 10 1.25e-04 CACGGAAAA AGAGGCGC GGGTCTCGAA chrII:5377579-5377659 31 1.54e-04 GTAGTTTTCA AAATACGC GGTTCACCGC chrIII:9617086-9617166 56 1.54e-04 GTAACACGAG AGATGCGC CAGCAACTTC chrII:12739519-12739599 28 1.54e-04 GTAGTTCACA AAATACGC AGTATGAACT chrIII:4489048-4489128 62 1.63e-04 CAAGCACGCG AAACGCGC CAGCAACAAT chrI:10553045-10553125 33 1.88e-04 ACGCATTAGA GAATGCGC AGGAATAGAT chrIII:11580608-11580688 6 2.10e-04 AAGCA AAATCCGC GAAAAAAAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAKGCGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:3269161-3269241 9.3e-06 36_[+4]_36 chrIV:13701640-13701720 9.3e-06 41_[+4]_31 chrIII:3390363-3390443 9.3e-06 64_[+4]_8 chrII:14245031-14245111 9.3e-06 5_[+4]_67 chrII:8015508-8015588 2.3e-05 21_[+4]_51 chrI:12491128-12491208 2.3e-05 24_[+4]_48 chrIV:6421338-6421418 2.3e-05 17_[+4]_55 chrIV:7548379-7548459 2.3e-05 56_[+4]_16 chrIII:6959013-6959093 3.6e-05 12_[+4]_60 chrIV:13348789-13348869 3.6e-05 23_[+4]_49 chrII:7863746-7863826 5.6e-05 71_[+4]_1 chrV:16356925-16357005 5.6e-05 39_[+4]_33 chrIII:4172426-4172506 5.6e-05 51_[+4]_21 chrI:519946-520026 5.6e-05 10_[+4]_62 chrIV:15011274-15011354 5.6e-05 38_[+4]_34 chrIII:5727935-5728015 6.2e-05 41_[+4]_31 chrIII:10881602-10881682 6.2e-05 34_[+4]_38 chrI:13542696-13542776 7.1e-05 54_[+4]_18 chrII:8285720-8285800 8.5e-05 68_[+4]_4 chrIV:7796855-7796935 8.5e-05 6_[+4]_66 chrII:6491333-6491413 8.5e-05 24_[+4]_48 chrIII:11694427-11694507 0.0001 57_[+4]_15 chrII:11860651-11860731 0.0001 28_[+4]_44 chrII:11968392-11968472 0.00012 2_[+4]_70 chrI:3198968-3199048 0.00012 9_[+4]_63 chrII:5377579-5377659 0.00015 30_[+4]_42 chrIII:9617086-9617166 0.00015 55_[+4]_17 chrII:12739519-12739599 0.00015 27_[+4]_45 chrIII:4489048-4489128 0.00016 61_[+4]_11 chrI:10553045-10553125 0.00019 32_[+4]_40 chrIII:11580608-11580688 0.00021 5_[+4]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAKGCGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAKGCGC width=8 seqs=31 chrI:3269161-3269241 ( 37) AAAGGCGC 1 chrIV:13701640-13701720 ( 42) AAAGGCGC 1 chrIII:3390363-3390443 ( 65) AAAGGCGC 1 chrII:14245031-14245111 ( 6) AAAGGCGC 1 chrII:8015508-8015588 ( 22) AAATGCGC 1 chrI:12491128-12491208 ( 25) AAATGCGC 1 chrIV:6421338-6421418 ( 18) AAATGCGC 1 chrIV:7548379-7548459 ( 57) AAATGCGC 1 chrIII:6959013-6959093 ( 13) AAAGTCGC 1 chrIV:13348789-13348869 ( 24) AAAGTCGC 1 chrII:7863746-7863826 ( 72) AAATTCGC 1 chrV:16356925-16357005 ( 40) AAATTCGC 1 chrIII:4172426-4172506 ( 52) AAATTCGC 1 chrI:519946-520026 ( 11) AAATTCGC 1 chrIV:15011274-15011354 ( 39) AAATTCGC 1 chrIII:5727935-5728015 ( 42) CAAGGCGC 1 chrIII:10881602-10881682 ( 35) CAAGGCGC 1 chrI:13542696-13542776 ( 55) CAATGCGC 1 chrII:8285720-8285800 ( 69) AAAGGCAC 1 chrIV:7796855-7796935 ( 7) AAAGGCAC 1 chrII:6491333-6491413 ( 25) AAAGGCAC 1 chrIII:11694427-11694507 ( 58) AAATGCAC 1 chrII:11860651-11860731 ( 29) AAATGCAC 1 chrII:11968392-11968472 ( 3) AAAGACGC 1 chrI:3198968-3199048 ( 10) AGAGGCGC 1 chrII:5377579-5377659 ( 31) AAATACGC 1 chrIII:9617086-9617166 ( 56) AGATGCGC 1 chrII:12739519-12739599 ( 28) AAATACGC 1 chrIII:4489048-4489128 ( 62) AAACGCGC 1 chrI:10553045-10553125 ( 33) GAATGCGC 1 chrIII:11580608-11580688 ( 6) AAATCCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAKGCGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.90618 E= 3.1e+001 153 -106 -265 -1160 163 -1160 -165 -1160 173 -1160 -1160 -1160 -1160 -264 105 90 -164 -264 167 -38 -1160 231 -1160 -1160 -90 -1160 205 -1160 -1160 231 -1160 -1160 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAKGCGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 3.1e+001 0.870968 0.096774 0.032258 0.000000 0.935484 0.000000 0.064516 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.032258 0.419355 0.548387 0.096774 0.032258 0.645161 0.225806 0.000000 1.000000 0.000000 0.000000 0.161290 0.000000 0.838710 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAKGCGC MEME-4 regular expression -------------------------------------------------------------------------------- AAA[TG][GT]CGC -------------------------------------------------------------------------------- Time 17.44 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCGCCMC MEME-5 width = 8 sites = 8 llr = 85 E-value = 2.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCGCCMC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::::4: pos.-specific C 8:9:a96a probability G 3a1a:1:: matrix T :::::::: bits 2.3 * ** * 2.1 * ** * 1.8 ***** * 1.6 ***** * Relative 1.4 ****** * Entropy 1.2 ******** (15.4 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGCGCCCC consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCCMC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:4765576-4765656 19 2.80e-06 TAAATGCAGA CGCGCCCC AATGCACAGC chrI:3866609-3866689 18 2.80e-06 TGGTGAGACC CGCGCCCC CGCGCAAAAA chrI:2317534-2317614 53 6.97e-06 CTACTTTCCC CGCGCCAC ACGAGTTTAT chrIII:6959013-6959093 33 6.97e-06 GAAGATATTT CGCGCCAC ATAAATAGGA chrV:10019413-10019493 21 9.78e-06 ATGAACCAGT GGCGCCCC GCTCAAATTT chrIII:12225410-12225490 29 1.54e-05 TAGATTTACG CGGGCCCC TAGGCCCGTA chrI:519946-520026 59 1.54e-05 AACGTTCGCG CGCGCGCC GAAGTACGGT chrIII:4176344-4176424 48 1.96e-05 TTCAAATCGT GGCGCCAC ATGCGTTGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCCMC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:4765576-4765656 2.8e-06 18_[+5]_54 chrI:3866609-3866689 2.8e-06 17_[+5]_55 chrI:2317534-2317614 7e-06 52_[+5]_20 chrIII:6959013-6959093 7e-06 32_[+5]_40 chrV:10019413-10019493 9.8e-06 20_[+5]_52 chrIII:12225410-12225490 1.5e-05 28_[+5]_44 chrI:519946-520026 1.5e-05 58_[+5]_14 chrIII:4176344-4176424 2e-05 47_[+5]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCCMC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCGCCMC width=8 seqs=8 chrI:4765576-4765656 ( 19) CGCGCCCC 1 chrI:3866609-3866689 ( 18) CGCGCCCC 1 chrI:2317534-2317614 ( 53) CGCGCCAC 1 chrIII:6959013-6959093 ( 33) CGCGCCAC 1 chrV:10019413-10019493 ( 21) GGCGCCCC 1 chrIII:12225410-12225490 ( 29) CGGGCCCC 1 chrI:519946-520026 ( 59) CGCGCGCC 1 chrIII:4176344-4176424 ( 48) GGCGCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCCMC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.4773 E= 2.0e+003 -965 189 30 -965 -965 -965 230 -965 -965 212 -70 -965 -965 -965 230 -965 -965 231 -965 -965 -965 212 -70 -965 32 163 -965 -965 -965 231 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCCMC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.0e+003 0.000000 0.750000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.875000 0.125000 0.000000 0.375000 0.625000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGCCMC MEME-5 regular expression -------------------------------------------------------------------------------- [CG]GCGCC[CA]C -------------------------------------------------------------------------------- Time 20.90 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:6923943-6924023 7.22e-02 80 chrI:12040790-12040870 2.17e-02 80 chrIII:6141005-6141085 2.26e-01 80 chrII:7195521-7195601 9.65e-02 80 chrI:11970056-11970136 1.02e-01 11_[+1(1.31e-05)]_29_[+1(7.80e-05)]_\ 24 chrIV:4085883-4085963 2.29e-01 80 chrII:8429317-8429397 7.15e-05 32_[+3(2.59e-05)]_40 chrII:11860651-11860731 9.58e-03 64_[+1(7.80e-05)]_8 chrIV:1496829-1496909 4.53e-04 47_[+2(5.58e-05)]_25 chrI:1014538-1014618 7.98e-01 80 chrIII:10877731-10877811 2.64e-05 43_[+3(8.63e-06)]_4_[+1(9.71e-05)]_\ 6_[+2(5.58e-05)]_3 chrIV:13348789-13348869 1.31e-02 23_[+4(3.63e-05)]_49 chrI:3931875-3931955 8.38e-02 40_[+1(9.71e-05)]_32 chrV:15571195-15571275 6.22e-05 33_[+2(5.58e-05)]_17_[+3(8.63e-06)]_\ 14 chrII:4604806-4604886 3.71e-02 80 chrI:13310772-13310852 1.69e-02 26_[+1(1.31e-05)]_46 chrIV:7782386-7782466 6.33e-01 80 chrV:20267167-20267247 6.16e-03 61_[+2(5.58e-05)]_11 chrI:12961909-12961989 3.11e-03 24_[+1(1.31e-05)]_48 chrII:11241662-11241742 2.22e-02 26_[+1(1.31e-05)]_46 chrII:8187597-8187677 1.43e-01 80 chrV:10343028-10343108 4.34e-01 80 chrV:1476560-1476640 8.85e-01 80 chrV:10019413-10019493 1.69e-02 20_[+5(9.78e-06)]_52 chrIII:190988-191068 3.00e-01 80 chrV:1918135-1918215 6.07e-02 62_[+3(1.73e-05)]_10 chrIII:10750159-10750239 2.07e-01 4_[+2(5.58e-05)]_68 chrI:1872612-1872692 4.27e-02 80 chrIV:7800467-7800547 5.69e-01 80 chrIV:15011274-15011354 2.26e-01 38_[+4(5.58e-05)]_34 chrI:11967857-11967937 7.51e-02 58_[+1(1.31e-05)]_14 chrI:3198968-3199048 8.18e-02 80 chrII:11860877-11860957 5.74e-01 80 chrI:3866609-3866689 2.65e-03 17_[+5(2.80e-06)]_55 chrIII:881535-881615 9.43e-01 80 chrIV:4047835-4047915 4.56e-03 54_[+2(5.58e-05)]_18 chrI:7707397-7707477 3.28e-01 80 chrIV:2314276-2314356 7.64e-01 80 chrI:2623012-2623092 1.20e-01 80 chrIV:14953923-14954003 7.25e-01 80 chrIV:5650962-5651042 8.46e-02 80 chrI:1834960-1835040 6.67e-01 80 chrV:15184251-15184331 1.95e-04 1_[+1(7.80e-05)]_25_[+3(9.48e-05)]_\ 38 chrIII:1508953-1509033 3.39e-01 80 chrIII:7736957-7737037 2.53e-02 80 chrII:14245031-14245111 1.06e-02 5_[+4(9.31e-06)]_67 chrIV:7548379-7548459 1.50e-03 56_[+4(2.28e-05)]_16 chrX:15193176-15193256 3.00e-01 80 chrIII:4216547-4216627 3.71e-01 80 chrII:9939006-9939086 1.04e-02 21_[+3(1.73e-05)]_51 chrI:10436949-10437029 8.83e-01 80 chrII:7880553-7880633 5.56e-04 23_[+3(8.63e-06)]_49 chrIV:12390073-12390153 5.50e-01 80 chrIII:4984871-4984951 8.09e-01 80 chrIII:12977777-12977857 8.38e-02 80 chrV:1815604-1815684 5.04e-02 80 chrIV:419892-419972 2.09e-01 80 chrIII:3902789-3902869 1.17e-01 80 chrIII:12429133-12429213 3.74e-01 80 chrIII:4489048-4489128 4.94e-03 80 chrII:4042899-4042979 7.76e-01 80 chrI:4765576-4765656 2.08e-03 18_[+5(2.80e-06)]_54 chrIII:11869505-11869585 9.09e-01 80 chrIII:10881602-10881682 2.12e-04 17_[+1(7.80e-05)]_9_[+4(6.20e-05)]_\ 38 chrII:12736794-12736874 9.04e-01 80 chrIII:7178686-7178766 9.91e-01 80 chrI:9690144-9690224 9.56e-01 80 chrV:8223594-8223674 8.13e-01 80 chrII:3056351-3056431 3.15e-04 57_[+3(8.63e-06)]_15 chrII:11050869-11050949 7.84e-04 46_[+3(8.63e-06)]_26 chrIII:13763947-13764027 8.06e-01 80 chrIII:7584366-7584446 2.65e-01 80 chrIII:9615190-9615270 5.84e-01 80 chrV:11558134-11558214 9.05e-01 80 chrIV:6974314-6974394 5.17e-01 80 chrIII:12052141-12052221 7.39e-01 80 chrV:10238247-10238327 9.02e-01 80 chrIII:4999118-4999198 6.61e-01 80 chrIII:10209844-10209924 7.45e-01 80 chrII:12209008-12209088 8.53e-02 80 chrIII:12496574-12496654 9.32e-01 80 chrIII:8129432-8129512 7.32e-01 80 chrIV:6421338-6421418 1.84e-04 17_[+4(2.28e-05)]_9_[+1(7.80e-05)]_\ 38 chrII:12089003-12089083 6.01e-02 8_[+1(1.31e-05)]_64 chrII:2504237-2504317 2.55e-02 27_[+1(1.31e-05)]_45 chrI:6498251-6498331 5.64e-01 80 chrV:14991662-14991742 5.11e-01 80 chrIII:7329533-7329613 8.97e-01 80 chrI:2304306-2304386 5.34e-01 80 chrIV:6526657-6526737 4.65e-01 80 chrI:519946-520026 1.04e-04 10_[+4(5.58e-05)]_40_[+5(1.54e-05)]_\ 14 chrIII:5882458-5882538 7.42e-01 80 chrI:7869001-7869081 1.00e+00 80 chrI:3934861-3934941 9.67e-01 80 chrV:6655382-6655462 9.92e-01 80 chrIII:6164646-6164726 5.54e-01 80 chrII:4696275-4696355 9.77e-01 80 chrV:2698961-2699041 7.44e-01 80 chrV:7733483-7733563 7.94e-01 80 chrI:6368070-6368150 1.82e-01 80 chrII:4858030-4858110 9.83e-01 80 chrIII:8013780-8013860 9.89e-01 80 chrII:6491333-6491413 1.25e-03 24_[+4(8.49e-05)]_39_[+1(7.80e-05)]_\ 1 chrV:5717391-5717471 2.67e-01 80 chrIV:5366868-5366948 8.24e-01 80 chrII:8939070-8939150 3.21e-01 80 chrII:11968392-11968472 1.74e-03 43_[+1(1.31e-05)]_29 chrII:13491663-13491743 4.10e-01 80 chrI:3909764-3909844 1.08e-01 80 chrIV:16482963-16483043 6.04e-01 80 chrIV:13035519-13035599 4.51e-01 80 chrII:12739519-12739599 7.50e-04 12_[+1(7.80e-05)]_60 chrIV:2678296-2678376 2.92e-01 80 chrII:8684123-8684203 4.82e-02 67_[+2(5.58e-05)]_5 chrIII:6959013-6959093 3.13e-05 12_[+4(3.63e-05)]_12_[+5(6.97e-06)]_\ 40 chrIII:1603980-1604060 8.20e-01 80 chrIII:13692557-13692637 4.57e-01 80 chrV:5588102-5588182 4.47e-01 80 chrI:2317534-2317614 1.58e-02 52_[+5(6.97e-06)]_20 chrII:13521471-13521551 6.88e-01 80 chrIV:7796855-7796935 4.70e-02 6_[+4(8.49e-05)]_66 chrIV:5850966-5851046 5.36e-01 80 chrIII:13343766-13343846 9.29e-01 80 chrIII:2811648-2811728 2.04e-01 15_[+2(5.58e-05)]_57 chrIV:12565868-12565948 3.70e-02 80 chrIII:4172426-4172506 8.85e-02 51_[+4(5.58e-05)]_21 chrV:9689528-9689608 9.97e-02 80 chrIII:10876829-10876909 2.98e-01 80 chrI:10163659-10163739 7.00e-01 80 chrII:11651158-11651238 5.15e-01 80 chrV:4373852-4373932 7.35e-01 80 chrV:13312433-13312513 5.16e-02 80 chrIII:4176344-4176424 6.74e-02 47_[+5(1.96e-05)]_25 chrIII:3390363-3390443 3.16e-03 64_[+4(9.31e-06)]_8 chrIII:5557409-5557489 1.48e-02 52_[+3(8.20e-05)]_20 chrIII:11580608-11580688 4.33e-01 80 chrII:12923371-12923451 1.93e-01 70_[+2(5.58e-05)]_2 chrII:12672501-12672581 1.09e-02 80 chrIV:11820748-11820828 5.59e-01 80 chrIII:9462753-9462833 8.36e-02 80 chrII:4229285-4229365 2.95e-03 40_[+3(8.63e-06)]_32 chrV:14013770-14013850 3.37e-01 80 chrIII:12607483-12607563 8.56e-01 80 chrIV:9778183-9778263 1.94e-02 4_[+1(2.63e-05)]_68 chrI:6789445-6789525 2.40e-01 80 chrI:7701567-7701647 7.85e-02 80 chrV:4689332-4689412 8.11e-02 49_[+3(6.47e-05)]_23 chrIV:17280208-17280288 6.13e-01 80 chrIV:12570665-12570745 7.10e-01 80 chrIII:9617086-9617166 9.53e-03 80 chrII:13724095-13724175 2.62e-03 32_[+2(5.58e-05)]_23_[+3(3.88e-05)]_\ 9 chrIII:11245320-11245400 1.77e-02 60_[+2(5.58e-05)]_12 chrI:8676622-8676702 1.48e-01 80 chrI:14758929-14759009 5.48e-01 80 chrI:12861939-12862019 3.52e-01 80 chrV:15083828-15083908 9.93e-01 80 chrI:6798264-6798344 4.18e-01 80 chrIII:1625814-1625894 1.14e-01 80 chrV:6783180-6783260 7.07e-01 80 chrV:6423-6503 4.38e-01 80 chrV:18085562-18085642 1.98e-01 65_[+1(7.80e-05)]_7 chrI:9512371-9512451 5.18e-03 44_[+1(7.80e-05)]_28 chrV:19430684-19430764 9.91e-01 80 chrII:11917693-11917773 9.88e-01 80 chrI:5158506-5158586 4.52e-01 80 chrIV:1277193-1277273 5.33e-01 80 chrI:6320338-6320418 1.77e-01 80 chrIII:7102008-7102088 2.06e-01 32_[+1(7.80e-05)]_40 chrI:9177530-9177610 7.13e-01 80 chrI:3368656-3368736 1.85e-01 80 chrII:6358387-6358467 1.32e-02 46_[+3(5.60e-05)]_26 chrIV:13782539-13782619 8.17e-01 80 chrII:9056363-9056443 8.29e-01 80 chrI:1153232-1153312 5.15e-01 80 chrIII:3699552-3699632 1.94e-01 80 chrIV:13510234-13510314 6.48e-01 80 chrI:134177-134257 5.64e-01 80 chrI:14718886-14718966 9.29e-01 80 chrI:7702659-7702739 9.81e-01 80 chrI:11177597-11177677 4.93e-01 80 chrII:11690946-11691026 5.16e-01 80 chrI:14476531-14476611 4.10e-01 80 chrII:11965008-11965088 7.78e-01 80 chrII:6736208-6736288 6.95e-01 80 chrV:13007044-13007124 4.55e-01 80 chrI:6855507-6855587 1.69e-01 80 chrIII:12499412-12499492 5.78e-02 80 chrIII:12225410-12225490 3.96e-02 28_[+5(1.54e-05)]_44 chrIII:6210591-6210671 9.62e-01 80 chrIV:7397611-7397691 5.71e-01 80 chrII:2751504-2751584 7.79e-01 80 chrII:13494952-13495032 2.15e-01 80 chrIV:8752673-8752753 8.89e-01 80 chrII:12726900-12726980 1.59e-02 23_[+2(5.58e-05)]_49 chrI:12491128-12491208 2.44e-03 24_[+4(2.28e-05)]_48 chrIII:9782141-9782221 3.97e-01 80 chrIII:11694427-11694507 2.76e-02 80 chrII:4590781-4590861 1.48e-02 61_[+3(3.88e-05)]_11 chrI:10553045-10553125 2.27e-01 80 chrII:10543220-10543300 3.56e-01 80 chrI:12040992-12041072 3.65e-01 80 chrV:15392811-15392891 1.21e-02 80 chrI:11745703-11745783 8.09e-01 80 chrII:12738549-12738629 9.90e-01 80 chrII:15004634-15004714 7.99e-03 80 chrI:10085797-10085877 5.32e-01 80 chrV:16356925-16357005 3.19e-02 39_[+4(5.58e-05)]_33 chrI:13542696-13542776 1.13e-04 54_[+4(7.11e-05)]_18 chrIV:14769438-14769518 5.96e-03 80 chrIV:17088998-17089078 1.29e-02 71_[+2(5.58e-05)]_1 chrI:8022718-8022798 9.75e-01 80 chrV:1157539-1157619 5.66e-01 80 chrIII:5727935-5728015 1.18e-04 1_[+3(8.20e-05)]_32_[+4(6.20e-05)]_\ 31 chrIV:13701640-13701720 6.68e-03 41_[+4(9.31e-06)]_31 chrI:13658120-13658200 4.88e-01 80 chrII:3453696-3453776 2.21e-03 33_[+1(1.31e-05)]_9_[+2(5.58e-05)]_\ 22 chrI:13953318-13953398 6.19e-01 80 chrI:4645489-4645569 2.60e-01 80 chrIV:5544918-5544998 4.86e-01 80 chrI:8109485-8109565 2.17e-02 61_[+1(9.71e-05)]_11 chrIV:9318453-9318533 6.69e-01 80 chrI:3269161-3269241 1.16e-02 36_[+4(9.31e-06)]_36 chrIV:1708625-1708705 4.89e-01 80 chrIII:10881869-10881949 9.21e-01 80 chrIV:5541442-5541522 3.07e-02 28_[+3(3.88e-05)]_44 chrIV:14658230-14658310 7.42e-01 80 chrII:8015508-8015588 2.20e-04 21_[+4(2.28e-05)]_51 chrI:12528110-12528190 8.71e-03 80 chrI:9271223-9271303 4.07e-01 80 chrI:9364012-9364092 4.04e-03 25_[+1(7.80e-05)]_47 chrV:5592057-5592137 6.93e-01 80 chrIV:2766412-2766492 2.35e-01 80 chrIV:3296921-3297001 7.85e-02 63_[+2(5.58e-05)]_9 chrIV:11528059-11528139 4.09e-01 80 chrII:2030575-2030655 9.72e-02 67_[+1(9.71e-05)]_5 chrIV:7782592-7782672 8.90e-01 80 chrIV:8188779-8188859 5.07e-02 33_[+2(5.58e-05)]_39 chrII:7863746-7863826 2.40e-02 71_[+4(5.58e-05)]_1 chrIII:6123879-6123959 4.47e-01 80 chrV:14422478-14422558 9.42e-01 80 chrII:5377579-5377659 7.87e-04 15_[+1(7.80e-05)]_57 chrII:8285720-8285800 1.52e-01 68_[+4(8.49e-05)]_4 chrII:11880571-11880651 9.93e-01 80 chrIV:2891646-2891726 8.93e-01 80 chrI:12537698-12537778 7.05e-01 80 chrI:9787989-9788069 2.41e-01 80 chrIII:5446564-5446644 8.91e-01 80 chrI:5274307-5274387 7.17e-02 [+3(8.20e-05)]_72 chrV:9327007-9327087 2.31e-03 8_[+3(9.48e-05)]_12_[+3(2.59e-05)]_\ 44 chrI:4759694-4759774 9.90e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************