******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/atf-7.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:4821754-4821834 1.0000 80 chrII:2997962-2998042 1.0000 80 chrIV:11914598-11914678 1.0000 80 chrIV:8914335-8914415 1.0000 80 chrII:9498676-9498756 1.0000 80 chrV:15286151-15286231 1.0000 80 chrV:418037-418117 1.0000 80 chrII:2587193-2587273 1.0000 80 chrI:12978921-12979001 1.0000 80 chrIV:4213009-4213089 1.0000 80 chrX:8604313-8604393 1.0000 80 chrI:3296088-3296168 1.0000 80 chrX:3695080-3695160 1.0000 80 chrII:5932185-5932265 1.0000 80 chrI:2273308-2273388 1.0000 80 chrII:2335674-2335754 1.0000 80 chrIII:9963608-9963688 1.0000 80 chrX:1454002-1454082 1.0000 80 chrV:7748159-7748239 1.0000 80 chrIII:3377274-3377354 1.0000 80 chrIII:1414055-1414135 1.0000 80 chrI:12055033-12055113 1.0000 80 chrII:1143335-1143415 1.0000 80 chrII:2832253-2832333 1.0000 80 chrIV:10469669-10469749 1.0000 80 chrIV:4094481-4094561 1.0000 80 chrX:14610232-14610312 1.0000 80 chrIII:4506931-4507011 1.0000 80 chrV:1176583-1176663 1.0000 80 chrIV:1868378-1868458 1.0000 80 chrI:11286-11366 1.0000 80 chrX:15622181-15622261 1.0000 80 chrII:2998175-2998255 1.0000 80 chrV:12004805-12004885 1.0000 80 chrV:13659761-13659841 1.0000 80 chrX:3567028-3567108 1.0000 80 chrX:10306430-10306510 1.0000 80 chrIV:10463307-10463387 1.0000 80 chrI:2858870-2858950 1.0000 80 chrV:10562931-10563011 1.0000 80 chrX:3403403-3403483 1.0000 80 chrIV:12197843-12197923 1.0000 80 chrV:10333978-10334058 1.0000 80 chrII:8387114-8387194 1.0000 80 chrII:3684882-3684962 1.0000 80 chrV:8269975-8270055 1.0000 80 chrX:1541186-1541266 1.0000 80 chrIII:4493554-4493634 1.0000 80 chrV:17845791-17845871 1.0000 80 chrV:2731220-2731300 1.0000 80 chrV:13012075-13012155 1.0000 80 chrIV:8262892-8262972 1.0000 80 chrIV:2193204-2193284 1.0000 80 chrIII:11684941-11685021 1.0000 80 chrX:6664278-6664358 1.0000 80 chrII:1663644-1663724 1.0000 80 chrV:15499170-15499250 1.0000 80 chrIII:12020233-12020313 1.0000 80 chrII:2975688-2975768 1.0000 80 chrI:10776530-10776610 1.0000 80 chrX:10639592-10639672 1.0000 80 chrII:5512650-5512730 1.0000 80 chrIV:10511667-10511747 1.0000 80 chrIII:6124811-6124891 1.0000 80 chrV:19421311-19421391 1.0000 80 chrX:3408934-3409014 1.0000 80 chrV:2308400-2308480 1.0000 80 chrX:14793454-14793534 1.0000 80 chrX:2836925-2837005 1.0000 80 chrIV:16168170-16168250 1.0000 80 chrV:18576299-18576379 1.0000 80 chrV:7140603-7140683 1.0000 80 chrI:1226313-1226393 1.0000 80 chrII:10302813-10302893 1.0000 80 chrV:11650941-11651021 1.0000 80 chrV:6706957-6707037 1.0000 80 chrIII:356489-356569 1.0000 80 chrIII:4502974-4503054 1.0000 80 chrV:19533669-19533749 1.0000 80 chrI:9047131-9047211 1.0000 80 chrIV:3613395-3613475 1.0000 80 chrX:7291417-7291497 1.0000 80 chrIV:5659016-5659096 1.0000 80 chrIV:11620988-11621068 1.0000 80 chrIII:6179203-6179283 1.0000 80 chrI:1914067-1914147 1.0000 80 chrV:2130043-2130123 1.0000 80 chrIII:11197452-11197532 1.0000 80 chrII:2610285-2610365 1.0000 80 chrII:15251839-15251919 1.0000 80 chrX:10479297-10479377 1.0000 80 chrII:10553514-10553594 1.0000 80 chrIII:353789-353869 1.0000 80 chrII:5185110-5185190 1.0000 80 chrV:6523048-6523128 1.0000 80 chrIII:2948835-2948915 1.0000 80 chrV:10802217-10802297 1.0000 80 chrIII:13607940-13608020 1.0000 80 chrV:3633603-3633683 1.0000 80 chrIV:8032323-8032403 1.0000 80 chrX:16260414-16260494 1.0000 80 chrIII:3571516-3571596 1.0000 80 chrV:11941847-11941927 1.0000 80 chrX:16677557-16677637 1.0000 80 chrIII:9488915-9488995 1.0000 80 chrI:6585541-6585621 1.0000 80 chrIII:10702687-10702767 1.0000 80 chrII:2913818-2913898 1.0000 80 chrII:11571381-11571461 1.0000 80 chrIII:2712910-2712990 1.0000 80 chrV:3713629-3713709 1.0000 80 chrV:1456775-1456855 1.0000 80 chrII:6927234-6927314 1.0000 80 chrX:11515503-11515583 1.0000 80 chrIV:11913372-11913452 1.0000 80 chrII:5104233-5104313 1.0000 80 chrIII:12327630-12327710 1.0000 80 chrI:13446859-13446939 1.0000 80 chrIII:11265072-11265152 1.0000 80 chrV:15354838-15354918 1.0000 80 chrIII:9704566-9704646 1.0000 80 chrIII:11834320-11834400 1.0000 80 chrII:4925524-4925604 1.0000 80 chrX:11047384-11047464 1.0000 80 chrX:8421747-8421827 1.0000 80 chrX:5106422-5106502 1.0000 80 chrI:4679558-4679638 1.0000 80 chrIV:8263091-8263171 1.0000 80 chrX:3290234-3290314 1.0000 80 chrI:3159300-3159380 1.0000 80 chrIV:12601127-12601207 1.0000 80 chrII:3786708-3786788 1.0000 80 chrII:10554230-10554310 1.0000 80 chrV:13044322-13044402 1.0000 80 chrX:2695140-2695220 1.0000 80 chrIII:13625798-13625878 1.0000 80 chrV:333813-333893 1.0000 80 chrIII:5764179-5764259 1.0000 80 chrV:13212719-13212799 1.0000 80 chrI:2253542-2253622 1.0000 80 chrIII:1392887-1392967 1.0000 80 chrIV:6880517-6880597 1.0000 80 chrI:12570991-12571071 1.0000 80 chrX:1011579-1011659 1.0000 80 chrII:5575084-5575164 1.0000 80 chrV:18576509-18576589 1.0000 80 chrII:12790040-12790120 1.0000 80 chrI:4653778-4653858 1.0000 80 chrI:3672719-3672799 1.0000 80 chrIII:9442932-9443012 1.0000 80 chrV:10693901-10693981 1.0000 80 chrV:17662446-17662526 1.0000 80 chrII:7060389-7060469 1.0000 80 chrX:11681030-11681110 1.0000 80 chrX:7296473-7296553 1.0000 80 chrV:15298729-15298809 1.0000 80 chrX:5846300-5846380 1.0000 80 chrV:474644-474724 1.0000 80 chrX:14780427-14780507 1.0000 80 chrI:14276771-14276851 1.0000 80 chrI:3720865-3720945 1.0000 80 chrIII:6592409-6592489 1.0000 80 chrX:15544857-15544937 1.0000 80 chrV:5512745-5512825 1.0000 80 chrX:11679743-11679823 1.0000 80 chrII:9482654-9482734 1.0000 80 chrIII:6850339-6850419 1.0000 80 chrII:10647232-10647312 1.0000 80 chrI:7480234-7480314 1.0000 80 chrIII:10421856-10421936 1.0000 80 chrII:4590638-4590718 1.0000 80 chrV:17721870-17721950 1.0000 80 chrIV:3988794-3988874 1.0000 80 chrV:5816571-5816651 1.0000 80 chrV:6413230-6413310 1.0000 80 chrIV:9648158-9648238 1.0000 80 chrI:1341339-1341419 1.0000 80 chrI:13817702-13817782 1.0000 80 chrIV:12834075-12834155 1.0000 80 chrIV:5087028-5087108 1.0000 80 chrX:11790777-11790857 1.0000 80 chrV:1132377-1132457 1.0000 80 chrX:7733579-7733659 1.0000 80 chrV:11009276-11009356 1.0000 80 chrIII:8879134-8879214 1.0000 80 chrX:14003629-14003709 1.0000 80 chrX:6129430-6129510 1.0000 80 chrI:5033383-5033463 1.0000 80 chrII:7277396-7277476 1.0000 80 chrX:9295632-9295712 1.0000 80 chrI:3019710-3019790 1.0000 80 chrIV:12269695-12269775 1.0000 80 chrV:10968062-10968142 1.0000 80 chrV:19050667-19050747 1.0000 80 chrII:5804137-5804217 1.0000 80 chrIII:4152051-4152131 1.0000 80 chrII:12726842-12726922 1.0000 80 chrV:8217913-8217993 1.0000 80 chrV:3632470-3632550 1.0000 80 chrX:2070713-2070793 1.0000 80 chrIII:8229286-8229366 1.0000 80 chrV:5821873-5821953 1.0000 80 chrX:7316702-7316782 1.0000 80 chrIV:10331999-10332079 1.0000 80 chrIV:3012529-3012609 1.0000 80 chrX:1272679-1272759 1.0000 80 chrIV:3899999-3900079 1.0000 80 chrV:4024911-4024991 1.0000 80 chrV:6488938-6489018 1.0000 80 chrII:12053267-12053347 1.0000 80 chrIII:1323735-1323815 1.0000 80 chrI:5895486-5895566 1.0000 80 chrV:19532253-19532333 1.0000 80 chrIV:1727729-1727809 1.0000 80 chrI:6836832-6836912 1.0000 80 chrII:5512851-5512931 1.0000 80 chrII:7639346-7639426 1.0000 80 chrIV:8542349-8542429 1.0000 80 chrV:3716445-3716525 1.0000 80 chrII:11427455-11427535 1.0000 80 chrV:1157723-1157803 1.0000 80 chrV:13377340-13377420 1.0000 80 chrIV:5544804-5544884 1.0000 80 chrIV:14799283-14799363 1.0000 80 chrII:12816905-12816985 1.0000 80 chrX:6609440-6609520 1.0000 80 chrIV:386735-386815 1.0000 80 chrII:6615423-6615503 1.0000 80 chrII:10546086-10546166 1.0000 80 chrIII:12658775-12658855 1.0000 80 chrX:1459632-1459712 1.0000 80 chrII:11966828-11966908 1.0000 80 chrV:12797070-12797150 1.0000 80 chrV:14196608-14196688 1.0000 80 chrX:3729123-3729203 1.0000 80 chrX:14500735-14500815 1.0000 80 chrII:7944538-7944618 1.0000 80 chrI:2607001-2607081 1.0000 80 chrIII:8326193-8326273 1.0000 80 chrV:8651508-8651588 1.0000 80 chrX:1478116-1478196 1.0000 80 chrII:5892890-5892970 1.0000 80 chrX:10480717-10480797 1.0000 80 chrV:6220877-6220957 1.0000 80 chrII:14256140-14256220 1.0000 80 chrIV:2768304-2768384 1.0000 80 chrIV:297007-297087 1.0000 80 chrX:15345845-15345925 1.0000 80 chrIII:3982480-3982560 1.0000 80 chrX:440567-440647 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_atf-7/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/atf-7.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.293 C 0.199 G 0.201 T 0.307 Background letter frequencies (from file dataset with add-one prior applied): A 0.293 C 0.199 G 0.201 T 0.307 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGACGTCA MEME-1 width = 8 sites = 95 llr = 976 E-value = 3.1e-156 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::a::::a pos.-specific C :::a::9: probability G :a::a::: matrix T a::::a:: bits 2.3 * 2.1 * ** 1.9 * ** * 1.6 ** ***** Relative 1.4 ******** Entropy 1.2 ******** (14.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGACGTCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:3982480-3982560 41 1.29e-05 CATTTTTTAG TGACGTCA TCGTCAAAAC chrI:2607001-2607081 51 1.29e-05 AAATTTTTTG TGACGTCA CACATGACCT chrV:14196608-14196688 24 1.29e-05 CCCATGATAA TGACGTCA TCCGATTCGT chrV:3716445-3716525 46 1.29e-05 CAATCCTTGA TGACGTCA TCTGACGTGC chrI:5895486-5895566 27 1.29e-05 TTCAAAATAG TGACGTCA TTGCGATCGT chrII:12053267-12053347 58 1.29e-05 ccaaaaaaag tgacgtca gcacgctctt chrI:3019710-3019790 65 1.29e-05 TTTCTGTGCA TGACGTCA CTTCTAGG chrI:13817702-13817782 21 1.29e-05 GTGGGGGTGA TGACGTCA TCATCCAGAG chrIV:9648158-9648238 54 1.29e-05 TTGGTAAAAA TGACGTCA CTTTGTTTAT chrIII:10421856-10421936 15 1.29e-05 TGGCACCGAG TGACGTCA TCACTGCTCT chrI:7480234-7480314 56 1.29e-05 CATTGTGAAA TGACGTCA TTCCCCTTTC chrI:3720865-3720945 38 1.29e-05 GCTTAACCGA TGACGTCA TTTGCAAGGG chrI:4653778-4653858 10 1.29e-05 ACCAGAAGA TGACGTCA TCTGACCGTT chrII:12790040-12790120 34 1.29e-05 aaactatgaa tgacgtca cttttgacat chrI:2253542-2253622 58 1.29e-05 GCCGATACCA TGACGTCA TTTTTAACCG chrIII:5764179-5764259 47 1.29e-05 aTCATAATCA TGACGTCA CTTCCATTTC chrII:10554230-10554310 58 1.29e-05 CCCGAAAACA TGACGTCA TTGGGTCAAA chrI:4679558-4679638 43 1.29e-05 ATGTTATTAG TGACGTCA TATACTTGCA chrIII:9704566-9704646 24 1.29e-05 TTTGTGATGA TGACGTCA TACGGTGTCC chrIII:11265072-11265152 48 1.29e-05 ATGCTTAAAG TGACGTCA TGCAAGACTA chrI:13446859-13446939 51 1.29e-05 AGCTACCCGA TGACGTCA TAATTCAAAA chrV:3713629-3713709 18 1.29e-05 caaaaaaaag tgacgtca tcacgttctt chrIII:2712910-2712990 50 1.29e-05 CAGTGAAGAA TGACGTCA TCCTTAATCG chrII:11571381-11571461 60 1.29e-05 AGATAAATCA TGACGTCA TGAAAACCTC chrIII:10702687-10702767 28 1.29e-05 AACATGAAAG TGACGTCA TTGATGAGCA chrIII:9488915-9488995 2 1.29e-05 A TGACGTCA CTGCTCTTGA chrX:16260414-16260494 57 1.29e-05 ATGCAGAAAG TGACGTCA TTATTTGCAT chrIII:2948835-2948915 21 1.29e-05 GCTCTGCCGA TGACGTCA TAGCCACGTT chrIII:353789-353869 37 1.29e-05 TTAATAAAAA TGACGTCA TGATTTTTTT chrII:10553514-10553594 73 1.29e-05 CGCGGCTGGA TGACGTCA chrIV:11620988-11621068 66 1.29e-05 TTACCCCAAG TGACGTCA TCACTAC chrV:19533669-19533749 42 1.29e-05 TAAAGGTTGA TGACGTCA TCTGAACGGG chrIII:356489-356569 15 1.29e-05 AACTCACGAG TGACGTCA CTATTCCTCG chrV:6706957-6707037 32 1.29e-05 CATTGCCAAG TGACGTCA TAAATATCGA chrV:7140603-7140683 17 1.29e-05 CAAATAAAAG TGACGTCA TTGAGTTGTT chrV:19421311-19421391 3 1.29e-05 GA TGACGTCA TTTGACCTTG chrIII:6124811-6124891 26 1.29e-05 TAACAAATAA TGACGTCA TCATTTATGT chrIV:10511667-10511747 49 1.29e-05 GATGACGTGA TGACGTCA TGACGTGTGT chrX:10639592-10639672 56 1.29e-05 ATTTTGCCGA TGACGTCA TCGGGCTTCA chrII:2975688-2975768 13 1.29e-05 TCAACTCCTA TGACGTCA TCACTCCTTC chrIII:12020233-12020313 24 1.29e-05 CAAAAACGAA TGACGTCA TTCCTCTCTC chrV:15499170-15499250 68 1.29e-05 CCCCTATCTA TGACGTCA CGCTG chrII:1663644-1663724 43 1.29e-05 GTGCAGAGAA TGACGTCA CGGAGGTCAC chrX:6664278-6664358 73 1.29e-05 GATTTGGTCA TGACGTCA chrIII:11684941-11685021 64 1.29e-05 GCCACCCCGC TGACGTCA TAGTTTACT chrIV:2193204-2193284 14 1.29e-05 CGGGCGACAA TGACGTCA CTTTAATCGT chrV:17845791-17845871 47 1.29e-05 ACAAAGTGCA TGACGTCA TAAAATTGGA chrX:1541186-1541266 32 1.29e-05 GTAAAACCCG TGACGTCA GCACCATCTT chrII:3684882-3684962 32 1.29e-05 AAATGGACGA TGACGTCA TAGAATTTCT chrI:2858870-2858950 15 1.29e-05 AGGCCATCTG TGACGTCA TAGAAGTTTT chrX:10306430-10306510 29 1.29e-05 CGAAAAAAAG TGACGTCA CTCTACTTTA chrII:2998175-2998255 43 1.29e-05 AAGCTAAAGG TGACGTCA CTTTTTTTAT chrX:15622181-15622261 45 1.29e-05 GATCATAATA TGACGTCA CTTTAACAAA chrI:11286-11366 52 1.29e-05 GGCGAGCTGA TGACGTCA TCAATTTTTC chrIV:1868378-1868458 47 1.29e-05 AAAATGTTCG TGACGTCA TAATTTGTTA chrV:1176583-1176663 50 1.29e-05 TTCACTTCGG TGACGTCA CGTGTTTCTG chrIII:4506931-4507011 69 1.29e-05 TCCGGGTTTA TGACGTCA ACAA chrX:14610232-14610312 31 1.29e-05 AAAATGACGA TGACGTCA TCGATTTCTT chrIV:4094481-4094561 35 1.29e-05 ACCAGAGAAG TGACGTCA TTTATTTTTC chrII:2832253-2832333 67 1.29e-05 GACAACACAG TGACGTCA CCTGTT chrII:1143335-1143415 22 1.29e-05 TCAACAATTA TGACGTCA TTTTCTGATT chrI:12055033-12055113 34 1.29e-05 TGGATTTAGA TGACGTCA TCTTTTTGTT chrIII:1414055-1414135 53 1.29e-05 CTGGTGATGA TGACGTCA TCTTGAAAAT chrIII:3377274-3377354 67 1.29e-05 GAACCTAATG TGACGTCA TCGGTG chrX:1454002-1454082 18 1.29e-05 AGTGAAATGA TGACGTCA TTGCCGCCGA chrIII:9963608-9963688 51 1.29e-05 ATTTGTTTGA TGACGTCA TCCAGTAGGT chrII:2335674-2335754 26 1.29e-05 CCATATGGTA TGACGTCA TAGGGTTGTG chrI:2273308-2273388 27 1.29e-05 GGAGGAGCAA TGACGTCA CTACTCTTCC chrII:5932185-5932265 39 1.29e-05 AGGATATGTA TGACGTCA TCACTTAATA chrX:3695080-3695160 29 1.29e-05 cgcaaatgag tgacgtca ttttttatac chrIV:4213009-4213089 31 1.29e-05 CTGAAAATAG TGACGTCA CTTTTATCAT chrII:2587193-2587273 62 1.29e-05 GAGGAAACAG TGACGTCA TTAAAGTAAC chrV:418037-418117 12 1.29e-05 GAAAAATTAG TGACGTCA TTCATCTAAA chrIV:8914335-8914415 54 1.29e-05 TTGACGAGAA TGACGTCA TCGATAATTT chrIV:11914598-11914678 22 1.29e-05 GCCCATTCGA TGACGTCA TTTTGAAGAG chrII:2997962-2998042 70 1.29e-05 AAACCAAGTG TGACGTCA CTT chrX:4821754-4821834 16 1.29e-05 GGAAGAATTA TGACGTCA CTTTTTTTTC chrII:11427455-11427535 68 2.18e-05 TTGTTCATCT TGGCGTCA CAATG chrX:6129430-6129510 34 2.18e-05 GCTGTGGCTG TGGCGTCA TCAGATTTAA chrX:15345845-15345925 7 7.33e-05 CACGAA TGACATCA TTTGGAACAC chrIV:297007-297087 9 7.33e-05 TATCAAAA TGTCGTCA TCATTTTTTG chrV:10968062-10968142 64 7.33e-05 GAGAGGCTAT TGACATCA CTATCTTGA chrX:11790777-11790857 63 7.33e-05 CTTTCACCAA TGACATCA TACTCTTGAT chrX:15544857-15544937 53 7.33e-05 TATGTATTTC TGACGTAA TTTCGAGGTG chrV:3633603-3633683 59 7.33e-05 AGGAAGTTGT TGTCGTCA AGCAGCCAGT chrIV:3613395-3613475 44 7.33e-05 GGCGGGCGGC TGACGTAA CGTGTCGAGC chrV:10562931-10563011 48 7.33e-05 TCTATGTTTC TGACGTAA TCGCCGTCAC chrIII:6179203-6179283 53 8.22e-05 TATAATCAAT TGACGTCG ATGGAAAACT chrV:10693901-10693981 27 1.09e-04 TAATGCTCCA TGACGTCT TGTCTCATTC chrIII:4502974-4503054 31 1.09e-04 TTTGATATCA TGACGTGA TAGGAACAAA chrV:17721870-17721950 7 2.07e-04 GCCACA TGATGTCA GCTTTTTTCT chrX:2695140-2695220 31 2.07e-04 CTCCATGTGG TGACTTCA TGTACGAGCT chrV:15354838-15354918 51 2.07e-04 TGCACCGAGA TTACGTCA TTTTGATTTT chrII:8387114-8387194 31 2.07e-04 TGAATGGTAA TGAAGTCA GAGTATGCTG chrIV:10469669-10469749 7 2.07e-04 TATCAA TGACGTTA TCTGCGGTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:3982480-3982560 1.3e-05 40_[+1]_32 chrI:2607001-2607081 1.3e-05 50_[+1]_22 chrV:14196608-14196688 1.3e-05 23_[+1]_49 chrV:3716445-3716525 1.3e-05 45_[+1]_27 chrI:5895486-5895566 1.3e-05 26_[+1]_46 chrII:12053267-12053347 1.3e-05 57_[+1]_15 chrI:3019710-3019790 1.3e-05 64_[+1]_8 chrI:13817702-13817782 1.3e-05 20_[+1]_52 chrIV:9648158-9648238 1.3e-05 53_[+1]_19 chrIII:10421856-10421936 1.3e-05 14_[+1]_58 chrI:7480234-7480314 1.3e-05 55_[+1]_17 chrI:3720865-3720945 1.3e-05 37_[+1]_35 chrI:4653778-4653858 1.3e-05 9_[+1]_63 chrII:12790040-12790120 1.3e-05 33_[+1]_39 chrI:2253542-2253622 1.3e-05 57_[+1]_15 chrIII:5764179-5764259 1.3e-05 46_[+1]_26 chrII:10554230-10554310 1.3e-05 57_[+1]_15 chrI:4679558-4679638 1.3e-05 42_[+1]_30 chrIII:9704566-9704646 1.3e-05 23_[+1]_49 chrIII:11265072-11265152 1.3e-05 47_[+1]_25 chrI:13446859-13446939 1.3e-05 50_[+1]_22 chrV:3713629-3713709 1.3e-05 17_[+1]_55 chrIII:2712910-2712990 1.3e-05 49_[+1]_23 chrII:11571381-11571461 1.3e-05 59_[+1]_13 chrIII:10702687-10702767 1.3e-05 27_[+1]_45 chrIII:9488915-9488995 1.3e-05 1_[+1]_71 chrX:16260414-16260494 1.3e-05 56_[+1]_16 chrIII:2948835-2948915 1.3e-05 20_[+1]_52 chrIII:353789-353869 1.3e-05 36_[+1]_36 chrII:10553514-10553594 1.3e-05 72_[+1] chrIV:11620988-11621068 1.3e-05 65_[+1]_7 chrV:19533669-19533749 1.3e-05 41_[+1]_31 chrIII:356489-356569 1.3e-05 14_[+1]_58 chrV:6706957-6707037 1.3e-05 31_[+1]_41 chrV:7140603-7140683 1.3e-05 16_[+1]_56 chrV:19421311-19421391 1.3e-05 2_[+1]_70 chrIII:6124811-6124891 1.3e-05 25_[+1]_47 chrIV:10511667-10511747 1.3e-05 48_[+1]_24 chrX:10639592-10639672 1.3e-05 55_[+1]_17 chrII:2975688-2975768 1.3e-05 12_[+1]_60 chrIII:12020233-12020313 1.3e-05 23_[+1]_49 chrV:15499170-15499250 1.3e-05 67_[+1]_5 chrII:1663644-1663724 1.3e-05 42_[+1]_30 chrX:6664278-6664358 1.3e-05 72_[+1] chrIII:11684941-11685021 1.3e-05 63_[+1]_9 chrIV:2193204-2193284 1.3e-05 13_[+1]_59 chrV:17845791-17845871 1.3e-05 46_[+1]_26 chrX:1541186-1541266 1.3e-05 31_[+1]_41 chrII:3684882-3684962 1.3e-05 31_[+1]_41 chrI:2858870-2858950 1.3e-05 14_[+1]_58 chrX:10306430-10306510 1.3e-05 28_[+1]_44 chrII:2998175-2998255 1.3e-05 42_[+1]_30 chrX:15622181-15622261 1.3e-05 44_[+1]_28 chrI:11286-11366 1.3e-05 51_[+1]_21 chrIV:1868378-1868458 1.3e-05 46_[+1]_26 chrV:1176583-1176663 1.3e-05 49_[+1]_23 chrIII:4506931-4507011 1.3e-05 68_[+1]_4 chrX:14610232-14610312 1.3e-05 30_[+1]_42 chrIV:4094481-4094561 1.3e-05 34_[+1]_38 chrII:2832253-2832333 1.3e-05 66_[+1]_6 chrII:1143335-1143415 1.3e-05 21_[+1]_51 chrI:12055033-12055113 1.3e-05 33_[+1]_39 chrIII:1414055-1414135 1.3e-05 52_[+1]_20 chrIII:3377274-3377354 1.3e-05 66_[+1]_6 chrX:1454002-1454082 1.3e-05 17_[+1]_55 chrIII:9963608-9963688 1.3e-05 50_[+1]_22 chrII:2335674-2335754 1.3e-05 25_[+1]_47 chrI:2273308-2273388 1.3e-05 26_[+1]_46 chrII:5932185-5932265 1.3e-05 38_[+1]_34 chrX:3695080-3695160 1.3e-05 28_[+1]_44 chrIV:4213009-4213089 1.3e-05 30_[+1]_42 chrII:2587193-2587273 1.3e-05 61_[+1]_11 chrV:418037-418117 1.3e-05 11_[+1]_61 chrIV:8914335-8914415 1.3e-05 53_[+1]_19 chrIV:11914598-11914678 1.3e-05 21_[+1]_51 chrII:2997962-2998042 1.3e-05 69_[+1]_3 chrX:4821754-4821834 1.3e-05 15_[+1]_57 chrII:11427455-11427535 2.2e-05 67_[+1]_5 chrX:6129430-6129510 2.2e-05 33_[+1]_39 chrX:15345845-15345925 7.3e-05 6_[+1]_66 chrIV:297007-297087 7.3e-05 8_[+1]_64 chrV:10968062-10968142 7.3e-05 63_[+1]_9 chrX:11790777-11790857 7.3e-05 62_[+1]_10 chrX:15544857-15544937 7.3e-05 52_[+1]_20 chrV:3633603-3633683 7.3e-05 58_[+1]_14 chrIV:3613395-3613475 7.3e-05 43_[+1]_29 chrV:10562931-10563011 7.3e-05 47_[+1]_25 chrIII:6179203-6179283 8.2e-05 52_[+1]_20 chrV:10693901-10693981 0.00011 26_[+1]_46 chrIII:4502974-4503054 0.00011 30_[+1]_42 chrV:17721870-17721950 0.00021 6_[+1]_66 chrX:2695140-2695220 0.00021 30_[+1]_42 chrV:15354838-15354918 0.00021 50_[+1]_22 chrII:8387114-8387194 0.00021 30_[+1]_42 chrIV:10469669-10469749 0.00021 6_[+1]_66 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGACGTCA width=8 seqs=95 chrIII:3982480-3982560 ( 41) TGACGTCA 1 chrI:2607001-2607081 ( 51) TGACGTCA 1 chrV:14196608-14196688 ( 24) TGACGTCA 1 chrV:3716445-3716525 ( 46) TGACGTCA 1 chrI:5895486-5895566 ( 27) TGACGTCA 1 chrII:12053267-12053347 ( 58) TGACGTCA 1 chrI:3019710-3019790 ( 65) TGACGTCA 1 chrI:13817702-13817782 ( 21) TGACGTCA 1 chrIV:9648158-9648238 ( 54) TGACGTCA 1 chrIII:10421856-10421936 ( 15) TGACGTCA 1 chrI:7480234-7480314 ( 56) TGACGTCA 1 chrI:3720865-3720945 ( 38) TGACGTCA 1 chrI:4653778-4653858 ( 10) TGACGTCA 1 chrII:12790040-12790120 ( 34) TGACGTCA 1 chrI:2253542-2253622 ( 58) TGACGTCA 1 chrIII:5764179-5764259 ( 47) TGACGTCA 1 chrII:10554230-10554310 ( 58) TGACGTCA 1 chrI:4679558-4679638 ( 43) TGACGTCA 1 chrIII:9704566-9704646 ( 24) TGACGTCA 1 chrIII:11265072-11265152 ( 48) TGACGTCA 1 chrI:13446859-13446939 ( 51) TGACGTCA 1 chrV:3713629-3713709 ( 18) TGACGTCA 1 chrIII:2712910-2712990 ( 50) TGACGTCA 1 chrII:11571381-11571461 ( 60) TGACGTCA 1 chrIII:10702687-10702767 ( 28) TGACGTCA 1 chrIII:9488915-9488995 ( 2) TGACGTCA 1 chrX:16260414-16260494 ( 57) TGACGTCA 1 chrIII:2948835-2948915 ( 21) TGACGTCA 1 chrIII:353789-353869 ( 37) TGACGTCA 1 chrII:10553514-10553594 ( 73) TGACGTCA 1 chrIV:11620988-11621068 ( 66) TGACGTCA 1 chrV:19533669-19533749 ( 42) TGACGTCA 1 chrIII:356489-356569 ( 15) TGACGTCA 1 chrV:6706957-6707037 ( 32) TGACGTCA 1 chrV:7140603-7140683 ( 17) TGACGTCA 1 chrV:19421311-19421391 ( 3) TGACGTCA 1 chrIII:6124811-6124891 ( 26) TGACGTCA 1 chrIV:10511667-10511747 ( 49) TGACGTCA 1 chrX:10639592-10639672 ( 56) TGACGTCA 1 chrII:2975688-2975768 ( 13) TGACGTCA 1 chrIII:12020233-12020313 ( 24) TGACGTCA 1 chrV:15499170-15499250 ( 68) TGACGTCA 1 chrII:1663644-1663724 ( 43) TGACGTCA 1 chrX:6664278-6664358 ( 73) TGACGTCA 1 chrIII:11684941-11685021 ( 64) TGACGTCA 1 chrIV:2193204-2193284 ( 14) TGACGTCA 1 chrV:17845791-17845871 ( 47) TGACGTCA 1 chrX:1541186-1541266 ( 32) TGACGTCA 1 chrII:3684882-3684962 ( 32) TGACGTCA 1 chrI:2858870-2858950 ( 15) TGACGTCA 1 chrX:10306430-10306510 ( 29) TGACGTCA 1 chrII:2998175-2998255 ( 43) TGACGTCA 1 chrX:15622181-15622261 ( 45) TGACGTCA 1 chrI:11286-11366 ( 52) TGACGTCA 1 chrIV:1868378-1868458 ( 47) TGACGTCA 1 chrV:1176583-1176663 ( 50) TGACGTCA 1 chrIII:4506931-4507011 ( 69) TGACGTCA 1 chrX:14610232-14610312 ( 31) TGACGTCA 1 chrIV:4094481-4094561 ( 35) TGACGTCA 1 chrII:2832253-2832333 ( 67) TGACGTCA 1 chrII:1143335-1143415 ( 22) TGACGTCA 1 chrI:12055033-12055113 ( 34) TGACGTCA 1 chrIII:1414055-1414135 ( 53) TGACGTCA 1 chrIII:3377274-3377354 ( 67) TGACGTCA 1 chrX:1454002-1454082 ( 18) TGACGTCA 1 chrIII:9963608-9963688 ( 51) TGACGTCA 1 chrII:2335674-2335754 ( 26) TGACGTCA 1 chrI:2273308-2273388 ( 27) TGACGTCA 1 chrII:5932185-5932265 ( 39) TGACGTCA 1 chrX:3695080-3695160 ( 29) TGACGTCA 1 chrIV:4213009-4213089 ( 31) TGACGTCA 1 chrII:2587193-2587273 ( 62) TGACGTCA 1 chrV:418037-418117 ( 12) TGACGTCA 1 chrIV:8914335-8914415 ( 54) TGACGTCA 1 chrIV:11914598-11914678 ( 22) TGACGTCA 1 chrII:2997962-2998042 ( 70) TGACGTCA 1 chrX:4821754-4821834 ( 16) TGACGTCA 1 chrII:11427455-11427535 ( 68) TGGCGTCA 1 chrX:6129430-6129510 ( 34) TGGCGTCA 1 chrX:15345845-15345925 ( 7) TGACATCA 1 chrIV:297007-297087 ( 9) TGTCGTCA 1 chrV:10968062-10968142 ( 64) TGACATCA 1 chrX:11790777-11790857 ( 63) TGACATCA 1 chrX:15544857-15544937 ( 53) TGACGTAA 1 chrV:3633603-3633683 ( 59) TGTCGTCA 1 chrIV:3613395-3613475 ( 44) TGACGTAA 1 chrV:10562931-10563011 ( 48) TGACGTAA 1 chrIII:6179203-6179283 ( 53) TGACGTCG 1 chrV:10693901-10693981 ( 27) TGACGTCT 1 chrIII:4502974-4503054 ( 31) TGACGTGA 1 chrV:17721870-17721950 ( 7) TGATGTCA 1 chrX:2695140-2695220 ( 31) TGACTTCA 1 chrV:15354838-15354918 ( 51) TTACGTCA 1 chrII:8387114-8387194 ( 31) TGAAGTCA 1 chrIV:10469669-10469749 ( 7) TGACGTTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.01665 E= 3.1e-156 -1321 -1321 -1321 170 -1321 -1321 230 -486 171 -1321 -325 -386 -479 230 -1321 -486 -321 -1321 225 -486 -1321 -1321 -1321 170 -321 225 -425 -486 174 -1321 -425 -486 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 95 E= 3.1e-156 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.989474 0.010526 0.957895 0.000000 0.021053 0.021053 0.010526 0.978947 0.000000 0.010526 0.031579 0.000000 0.957895 0.010526 0.000000 0.000000 0.000000 1.000000 0.031579 0.947368 0.010526 0.010526 0.978947 0.000000 0.010526 0.010526 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 regular expression -------------------------------------------------------------------------------- TGACGTCA -------------------------------------------------------------------------------- Time 8.26 secs. ******************************************************************************** ******************************************************************************** MOTIF GACGTCAC MEME-2 width = 8 sites = 15 llr = 154 E-value = 1.4e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GACGTCAC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :9::::a: pos.-specific C :19::a:7 probability G a:1a:::: matrix T :1::a::3 bits 2.3 * * * 2.1 * * * 1.9 * ** ** 1.6 * ***** Relative 1.4 * ****** Entropy 1.2 ******** (14.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GACGTCAC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACGTCAC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:2607001-2607081 24 8.39e-06 TGAAAGTTAT GACGTCAC TAGTGACCTA chrV:19421311-19421391 44 8.39e-06 GCAATAAGAT GACGTCAC TTTATTATAT chrV:17845791-17845871 29 8.39e-06 CACAAATTAT GACGTCAC ACAAAGTGCA chrII:2998175-2998255 16 8.39e-06 AACCAAGTGT GACGTCAC TTTTTTCGAA chrV:1176583-1176663 26 8.39e-06 GTTTCGAAGT GACGTCAC ACAGGCTTCA chrII:2335674-2335754 43 8.39e-06 ATAGGGTTGT GACGTCAC TACTAAAAAG chrI:2273308-2273388 71 8.39e-06 AAAGAACGGC GACGTCAC TC chrII:2997962-2998042 40 8.39e-06 AACCAAGTGT GACGTCAC TTTTTTAGAC chrIII:11265072-11265152 24 2.13e-05 tgCTTAAAGT GACGTCAT GACACCATGC chrIV:1868378-1868458 25 2.13e-05 TTAAATCAGT GACGTCAT CAGCAAAATG chrIII:3377274-3377354 16 2.13e-05 GAAGAGAAGT GACGTCAT TACTGGTCTA chrIII:9963608-9963688 19 2.13e-05 ATCCAATGGT GACGTCAT TGTGGATTCG chrV:10562931-10563011 58 2.70e-05 TGACGTAATC GCCGTCAC TTAATTAATC chrII:1663644-1663724 53 4.43e-05 TGACGTCACG GAGGTCAC TCGCCTGCCG chrIV:2193204-2193284 53 4.43e-05 ATTTTCTTTC GTCGTCAC ATTTGGCCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACGTCAC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:2607001-2607081 8.4e-06 23_[+2]_49 chrV:19421311-19421391 8.4e-06 43_[+2]_29 chrV:17845791-17845871 8.4e-06 28_[+2]_44 chrII:2998175-2998255 8.4e-06 15_[+2]_57 chrV:1176583-1176663 8.4e-06 25_[+2]_47 chrII:2335674-2335754 8.4e-06 42_[+2]_30 chrI:2273308-2273388 8.4e-06 70_[+2]_2 chrII:2997962-2998042 8.4e-06 39_[+2]_33 chrIII:11265072-11265152 2.1e-05 23_[+2]_49 chrIV:1868378-1868458 2.1e-05 24_[+2]_48 chrIII:3377274-3377354 2.1e-05 15_[+2]_57 chrIII:9963608-9963688 2.1e-05 18_[+2]_54 chrV:10562931-10563011 2.7e-05 57_[+2]_15 chrII:1663644-1663724 4.4e-05 52_[+2]_20 chrIV:2193204-2193284 4.4e-05 52_[+2]_20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACGTCAC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GACGTCAC width=8 seqs=15 chrI:2607001-2607081 ( 24) GACGTCAC 1 chrV:19421311-19421391 ( 44) GACGTCAC 1 chrV:17845791-17845871 ( 29) GACGTCAC 1 chrII:2998175-2998255 ( 16) GACGTCAC 1 chrV:1176583-1176663 ( 26) GACGTCAC 1 chrII:2335674-2335754 ( 43) GACGTCAC 1 chrI:2273308-2273388 ( 71) GACGTCAC 1 chrII:2997962-2998042 ( 40) GACGTCAC 1 chrIII:11265072-11265152 ( 24) GACGTCAT 1 chrIV:1868378-1868458 ( 25) GACGTCAT 1 chrIII:3377274-3377354 ( 16) GACGTCAT 1 chrIII:9963608-9963688 ( 19) GACGTCAT 1 chrV:10562931-10563011 ( 58) GCCGTCAC 1 chrII:1663644-1663724 ( 53) GAGGTCAC 1 chrIV:2193204-2193284 ( 53) GTCGTCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACGTCAC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.5229 E= 1.4e-002 -1055 -1055 232 -1055 156 -158 -1055 -220 -1055 223 -159 -1055 -1055 -1055 232 -1055 -1055 -1055 -1055 170 -1055 233 -1055 -1055 177 -1055 -1055 -1055 -1055 188 -1055 -20 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACGTCAC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 1.4e-002 0.000000 0.000000 1.000000 0.000000 0.866667 0.066667 0.000000 0.066667 0.000000 0.933333 0.066667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.733333 0.000000 0.266667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACGTCAC MEME-2 regular expression -------------------------------------------------------------------------------- GACGTCA[CT] -------------------------------------------------------------------------------- Time 11.78 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAAAAAG MEME-3 width = 8 sites = 30 llr = 250 E-value = 5.9e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAAAAAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A 88aaa991 pos.-specific C :1:::::: probability G 21:::::9 matrix T ::::::1: bits 2.3 2.1 1.9 *** * 1.6 *** * Relative 1.4 ****** Entropy 1.2 * ****** (12.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AAAAAAAG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:1478116-1478196 17 3.73e-05 CCTCAGCGAG AAAAAAAG TGGGAACACC chrIV:14799283-14799363 13 3.73e-05 AGTTGAATGA AAAAAAAG GAAATCAATT chrV:13377340-13377420 47 3.73e-05 GTGGAAGTAC AAAAAAAG AGTGGCTGGC chrIV:8542349-8542429 62 3.73e-05 TTATCAAAAA AAAAAAAG AAGCAAACTT chrII:12053267-12053347 50 3.73e-05 atttttcccc aaaaaaag tgacgtcagc chrIV:3012529-3012609 41 3.73e-05 ATTTCAAAAA AAAAAAAG AAAATGTTCA chrX:2070713-2070793 47 3.73e-05 AAAAAGTAAA AAAAAAAG ATCACGGTAG chrIII:8879134-8879214 59 3.73e-05 AGTTCCGAGC AAAAAAAG ATAAGGAGGG chrIII:6592409-6592489 66 3.73e-05 AACTATCTAG AAAAAAAG TATGATT chrV:15298729-15298809 31 3.73e-05 GTCTATTCAA AAAAAAAG TTAGTCATCA chrV:3713629-3713709 10 3.73e-05 cttcgccca aaaaaaag tgacgtcatc chrIV:3613395-3613475 62 3.73e-05 CGTGTCGAGC AAAAAAAG CATCACGTTG chrX:10306430-10306510 21 3.73e-05 CGAATTACCG AAAAAAAG TGACGTCACT chrX:15622181-15622261 60 3.73e-05 TCACTTTAAC AAAAAAAG CGATTAGAAA chrII:9482654-9482734 66 6.28e-05 ACTCGAAGGT GAAAAAAG AGTTCAA chrI:12570991-12571071 44 6.28e-05 AGATGTCAGA GAAAAAAG TGACGTGTGT chrI:3296088-3296168 65 6.28e-05 GAAAAGGAGG GAAAAAAG AATGACGT chrII:7944538-7944618 53 1.14e-04 CGTCATCTCC ACAAAAAG CTTTATCTCT chrI:3672719-3672799 23 1.14e-04 TGATAACTAA ACAAAAAG GAAATGACAA chrX:10479297-10479377 53 1.14e-04 AAATTTGAAG ACAAAAAG GAAAGAATCG chrV:12797070-12797150 16 1.31e-04 CTCAAAAGCT GGAAAAAG GTATTTAGAA chrII:6615423-6615503 41 1.31e-04 GACCATTTTG GGAAAAAG CGCGTTGTGC chrII:7060389-7060469 45 1.31e-04 GACATAGAGA GGAAAAAG GTCAGAATGG chrX:14610232-14610312 11 1.31e-04 ATTGATTAGA GGAAAAAG CAAAAATGAC chrII:14256140-14256220 7 1.88e-04 TTATCG AAAAAAtg tgatttttga chrX:5846300-5846380 60 1.88e-04 AATGAGATGT AAAAAATG TTTTTTCAAT chrIII:5764179-5764259 20 2.39e-04 tcttagttct aaaaacag aacattctaa chrI:9047131-9047211 70 2.39e-04 GGAACTGATA AAAAAGAG AGG chrV:19532253-19532333 19 2.93e-04 AATTTTTTTC AAAAAAAA TTTAATtttt chrX:14003629-14003709 67 2.93e-04 GAGACCCTGC AAAAAAAA CCATGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1478116-1478196 3.7e-05 16_[+3]_56 chrIV:14799283-14799363 3.7e-05 12_[+3]_60 chrV:13377340-13377420 3.7e-05 46_[+3]_26 chrIV:8542349-8542429 3.7e-05 61_[+3]_11 chrII:12053267-12053347 3.7e-05 49_[+3]_23 chrIV:3012529-3012609 3.7e-05 40_[+3]_32 chrX:2070713-2070793 3.7e-05 46_[+3]_26 chrIII:8879134-8879214 3.7e-05 58_[+3]_14 chrIII:6592409-6592489 3.7e-05 65_[+3]_7 chrV:15298729-15298809 3.7e-05 30_[+3]_42 chrV:3713629-3713709 3.7e-05 9_[+3]_63 chrIV:3613395-3613475 3.7e-05 61_[+3]_11 chrX:10306430-10306510 3.7e-05 20_[+3]_52 chrX:15622181-15622261 3.7e-05 59_[+3]_13 chrII:9482654-9482734 6.3e-05 65_[+3]_7 chrI:12570991-12571071 6.3e-05 43_[+3]_29 chrI:3296088-3296168 6.3e-05 64_[+3]_8 chrII:7944538-7944618 0.00011 52_[+3]_20 chrI:3672719-3672799 0.00011 22_[+3]_50 chrX:10479297-10479377 0.00011 52_[+3]_20 chrV:12797070-12797150 0.00013 15_[+3]_57 chrII:6615423-6615503 0.00013 40_[+3]_32 chrII:7060389-7060469 0.00013 44_[+3]_28 chrX:14610232-14610312 0.00013 10_[+3]_62 chrII:14256140-14256220 0.00019 6_[+3]_66 chrX:5846300-5846380 0.00019 59_[+3]_13 chrIII:5764179-5764259 0.00024 19_[+3]_53 chrI:9047131-9047211 0.00024 69_[+3]_3 chrV:19532253-19532333 0.00029 18_[+3]_54 chrX:14003629-14003709 0.00029 66_[+3]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAAAAAG width=8 seqs=30 chrX:1478116-1478196 ( 17) AAAAAAAG 1 chrIV:14799283-14799363 ( 13) AAAAAAAG 1 chrV:13377340-13377420 ( 47) AAAAAAAG 1 chrIV:8542349-8542429 ( 62) AAAAAAAG 1 chrII:12053267-12053347 ( 50) AAAAAAAG 1 chrIV:3012529-3012609 ( 41) AAAAAAAG 1 chrX:2070713-2070793 ( 47) AAAAAAAG 1 chrIII:8879134-8879214 ( 59) AAAAAAAG 1 chrIII:6592409-6592489 ( 66) AAAAAAAG 1 chrV:15298729-15298809 ( 31) AAAAAAAG 1 chrV:3713629-3713709 ( 10) AAAAAAAG 1 chrIV:3613395-3613475 ( 62) AAAAAAAG 1 chrX:10306430-10306510 ( 21) AAAAAAAG 1 chrX:15622181-15622261 ( 60) AAAAAAAG 1 chrII:9482654-9482734 ( 66) GAAAAAAG 1 chrI:12570991-12571071 ( 44) GAAAAAAG 1 chrI:3296088-3296168 ( 65) GAAAAAAG 1 chrII:7944538-7944618 ( 53) ACAAAAAG 1 chrI:3672719-3672799 ( 23) ACAAAAAG 1 chrX:10479297-10479377 ( 53) ACAAAAAG 1 chrV:12797070-12797150 ( 16) GGAAAAAG 1 chrII:6615423-6615503 ( 41) GGAAAAAG 1 chrII:7060389-7060469 ( 45) GGAAAAAG 1 chrX:14610232-14610312 ( 11) GGAAAAAG 1 chrII:14256140-14256220 ( 7) AAAAAATG 1 chrX:5846300-5846380 ( 60) AAAAAATG 1 chrIII:5764179-5764259 ( 20) AAAAACAG 1 chrI:9047131-9047211 ( 70) AAAAAGAG 1 chrV:19532253-19532333 ( 19) AAAAAAAA 1 chrX:14003629-14003709 ( 67) AAAAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.92146 E= 5.9e+001 139 -1155 22 -1155 139 -99 -59 -1155 177 -1155 -1155 -1155 177 -1155 -1155 -1155 177 -1155 -1155 -1155 167 -258 -259 -1155 167 -1155 -1155 -220 -213 -1155 222 -1155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 5.9e+001 0.766667 0.000000 0.233333 0.000000 0.766667 0.100000 0.133333 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.933333 0.033333 0.033333 0.000000 0.933333 0.000000 0.000000 0.066667 0.066667 0.000000 0.933333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAAAAAG MEME-3 regular expression -------------------------------------------------------------------------------- [AG]AAAAAAG -------------------------------------------------------------------------------- Time 15.34 secs. ******************************************************************************** ******************************************************************************** MOTIF TYTTATCA MEME-4 width = 8 sites = 23 llr = 212 E-value = 2.3e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TYTTATCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::a::a pos.-specific C 27::::a: probability G :::::::: matrix T 83aa:a:: bits 2.3 * 2.1 * 1.9 * ** 1.6 ****** Relative 1.4 ****** Entropy 1.2 ******** (13.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TCTTATCA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTTATCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:8542349-8542429 50 3.02e-05 ATAATTCTAG TCTTATCA AAAAAAAAAA chrII:7277396-7277476 20 3.02e-05 CTTTTCACTG TCTTATCA GTGTCACCGA chrX:6129430-6129510 2 3.02e-05 T TCTTATCA ATTGATATAA chrII:10647232-10647312 46 3.02e-05 CCATTTCATT TCTTATCA GTGCCAAATT chrX:11047384-11047464 19 3.02e-05 AACTTGAGTT TCTTATCA ACACTTTATT chrV:11941847-11941927 28 3.02e-05 TAGCAGCTCC TCTTATCA ATTTTGAATT chrIII:13607940-13608020 50 3.02e-05 TTATGCCCGT TCTTATCA TTTTCAAGCT chrI:9047131-9047211 27 3.02e-05 CCACAGTCTT TCTTATCA CTCATCACTT chrI:1226313-1226393 35 3.02e-05 TCGCCATCAT TCTTATCA CAATGATGAT chrX:2836925-2837005 9 3.02e-05 CACTCCCG TCTTATCA GTGAGCCTGG chrV:13012075-13012155 30 3.02e-05 GCAGTAGGTT TCTTATCA GTGGAATGTT chrIII:1323735-1323815 20 7.68e-05 ATGTTTGACT TTTTATCA GAGTCTCTTA chrIV:12834075-12834155 48 7.68e-05 TTTTCCAACT TTTTATCA TCGAATTTTG chrIII:6592409-6592489 48 7.68e-05 GGAATTGCAA TTTTATCA AACTATCTAG chrIV:12601127-12601207 15 7.68e-05 CTTTGAACAT TTTTATCA TTATGGGTGA chrV:6706957-6707037 1 7.68e-05 . TTTTATCA GTGATCACCT chrIII:11684941-11685021 15 7.68e-05 TTTCGTTCAT TTTTATCA GCGATTATCA chrIV:10463307-10463387 2 7.68e-05 T TTTTATCA AGAAACAGAC chrV:12004805-12004885 34 7.68e-05 GAGTTTCTGA TTTTATCA TATCAATATC chrIV:3899999-3900079 20 9.64e-05 TCATAACACT CCTTATCA GAATTGCTTC chrX:9295632-9295712 22 9.64e-05 GATGAGTAGC CCTTATCA ACAAAAACGT chrIV:3988794-3988874 13 9.64e-05 CCTCACAGTC CCTTATCA CAAAACTCAA chrV:17721870-17721950 66 9.64e-05 AAAACTTGCG CCTTATCA CTTGGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTTATCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:8542349-8542429 3e-05 49_[+4]_23 chrII:7277396-7277476 3e-05 19_[+4]_53 chrX:6129430-6129510 3e-05 1_[+4]_71 chrII:10647232-10647312 3e-05 45_[+4]_27 chrX:11047384-11047464 3e-05 18_[+4]_54 chrV:11941847-11941927 3e-05 27_[+4]_45 chrIII:13607940-13608020 3e-05 49_[+4]_23 chrI:9047131-9047211 3e-05 26_[+4]_46 chrI:1226313-1226393 3e-05 34_[+4]_38 chrX:2836925-2837005 3e-05 8_[+4]_64 chrV:13012075-13012155 3e-05 29_[+4]_43 chrIII:1323735-1323815 7.7e-05 19_[+4]_53 chrIV:12834075-12834155 7.7e-05 47_[+4]_25 chrIII:6592409-6592489 7.7e-05 47_[+4]_25 chrIV:12601127-12601207 7.7e-05 14_[+4]_58 chrV:6706957-6707037 7.7e-05 [+4]_72 chrIII:11684941-11685021 7.7e-05 14_[+4]_58 chrIV:10463307-10463387 7.7e-05 1_[+4]_71 chrV:12004805-12004885 7.7e-05 33_[+4]_39 chrIV:3899999-3900079 9.6e-05 19_[+4]_53 chrX:9295632-9295712 9.6e-05 21_[+4]_51 chrIV:3988794-3988874 9.6e-05 12_[+4]_60 chrV:17721870-17721950 9.6e-05 65_[+4]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTTATCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TYTTATCA width=8 seqs=23 chrIV:8542349-8542429 ( 50) TCTTATCA 1 chrII:7277396-7277476 ( 20) TCTTATCA 1 chrX:6129430-6129510 ( 2) TCTTATCA 1 chrII:10647232-10647312 ( 46) TCTTATCA 1 chrX:11047384-11047464 ( 19) TCTTATCA 1 chrV:11941847-11941927 ( 28) TCTTATCA 1 chrIII:13607940-13608020 ( 50) TCTTATCA 1 chrI:9047131-9047211 ( 27) TCTTATCA 1 chrI:1226313-1226393 ( 35) TCTTATCA 1 chrX:2836925-2837005 ( 9) TCTTATCA 1 chrV:13012075-13012155 ( 30) TCTTATCA 1 chrIII:1323735-1323815 ( 20) TTTTATCA 1 chrIV:12834075-12834155 ( 48) TTTTATCA 1 chrIII:6592409-6592489 ( 48) TTTTATCA 1 chrIV:12601127-12601207 ( 15) TTTTATCA 1 chrV:6706957-6707037 ( 1) TTTTATCA 1 chrIII:11684941-11685021 ( 15) TTTTATCA 1 chrIV:10463307-10463387 ( 2) TTTTATCA 1 chrV:12004805-12004885 ( 34) TTTTATCA 1 chrIV:3899999-3900079 ( 20) CCTTATCA 1 chrX:9295632-9295712 ( 22) CCTTATCA 1 chrIV:3988794-3988874 ( 13) CCTTATCA 1 chrV:17721870-17721950 ( 66) CCTTATCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTTATCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.23674 E= 2.3e-002 -1117 -20 -1117 143 -1117 171 -1117 18 -1117 -1117 -1117 170 -1117 -1117 -1117 170 177 -1117 -1117 -1117 -1117 -1117 -1117 170 -1117 233 -1117 -1117 177 -1117 -1117 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTTATCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 2.3e-002 0.000000 0.173913 0.000000 0.826087 0.000000 0.652174 0.000000 0.347826 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTTATCA MEME-4 regular expression -------------------------------------------------------------------------------- T[CT]TTATCA -------------------------------------------------------------------------------- Time 18.81 secs. ******************************************************************************** ******************************************************************************** MOTIF TGATAAGA MEME-5 width = 8 sites = 15 llr = 151 E-value = 4.0e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGATAAGA MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::a:aa:8 pos.-specific C :::::::2 probability G :a::::a: matrix T a::a:::: bits 2.3 * * 2.1 * * 1.9 ** *** 1.6 ******* Relative 1.4 ******* Entropy 1.2 ******** (14.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGATAAGA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATAAGA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:8326193-8326273 45 2.81e-05 GTCGATCAAC TGATAAGA GCTCTCGTCA chrIII:1323735-1323815 3 2.81e-05 AC TGATAAGA TGTTTGACTT chrV:5821873-5821953 1 2.81e-05 . TGATAAGA AGCGTAGGCG chrII:4925524-4925604 14 2.81e-05 CATAGGTCAC TGATAAGA ATAACGGAAT chrIV:8032323-8032403 6 2.81e-05 TAAAC TGATAAGA ACGACAACTT chrIII:2948835-2948915 63 2.81e-05 ATAAGGTTGA TGATAAGA GGAGGAAATT chrI:1914067-1914147 71 2.81e-05 GTGGCGGCGG TGATAAGA GG chrII:5512650-5512730 56 2.81e-05 TTTTTTTTCC TGATAAGA GCTTTTTGAT chrV:2731220-2731300 20 2.81e-05 ACCCGAAAAC TGATAAGA CTCCTGGTCG chrIII:4493554-4493634 21 2.81e-05 AAAACGTTAC TGATAAGA ACAGAAACTC chrIV:12197843-12197923 30 2.81e-05 AGAGAAACAG TGATAAGA GCAATCTAAT chrII:2587193-2587273 18 2.81e-05 AGCAGTTAAT TGATAAGA AACATAGCGT chrI:5033383-5033463 28 4.71e-05 ATGTGATAAT TGATAAGC TGGGAAAACT chrIV:3988794-3988874 33 4.71e-05 AAACTCAAAG TGATAAGC ACCAGTCCAC chrII:2975688-2975768 58 4.71e-05 TCTTCCCAAC TGATAAGC TTATCTCATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATAAGA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:8326193-8326273 2.8e-05 44_[+5]_28 chrIII:1323735-1323815 2.8e-05 2_[+5]_70 chrV:5821873-5821953 2.8e-05 [+5]_72 chrII:4925524-4925604 2.8e-05 13_[+5]_59 chrIV:8032323-8032403 2.8e-05 5_[+5]_67 chrIII:2948835-2948915 2.8e-05 62_[+5]_10 chrI:1914067-1914147 2.8e-05 70_[+5]_2 chrII:5512650-5512730 2.8e-05 55_[+5]_17 chrV:2731220-2731300 2.8e-05 19_[+5]_53 chrIII:4493554-4493634 2.8e-05 20_[+5]_52 chrIV:12197843-12197923 2.8e-05 29_[+5]_43 chrII:2587193-2587273 2.8e-05 17_[+5]_55 chrI:5033383-5033463 4.7e-05 27_[+5]_45 chrIV:3988794-3988874 4.7e-05 32_[+5]_40 chrII:2975688-2975768 4.7e-05 57_[+5]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATAAGA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGATAAGA width=8 seqs=15 chrIII:8326193-8326273 ( 45) TGATAAGA 1 chrIII:1323735-1323815 ( 3) TGATAAGA 1 chrV:5821873-5821953 ( 1) TGATAAGA 1 chrII:4925524-4925604 ( 14) TGATAAGA 1 chrIV:8032323-8032403 ( 6) TGATAAGA 1 chrIII:2948835-2948915 ( 63) TGATAAGA 1 chrI:1914067-1914147 ( 71) TGATAAGA 1 chrII:5512650-5512730 ( 56) TGATAAGA 1 chrV:2731220-2731300 ( 20) TGATAAGA 1 chrIII:4493554-4493634 ( 21) TGATAAGA 1 chrIV:12197843-12197923 ( 30) TGATAAGA 1 chrII:2587193-2587273 ( 18) TGATAAGA 1 chrI:5033383-5033463 ( 28) TGATAAGC 1 chrIV:3988794-3988874 ( 33) TGATAAGC 1 chrII:2975688-2975768 ( 58) TGATAAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATAAGA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1725 E= 4.0e-001 -1055 -1055 -1055 170 -1055 -1055 232 -1055 177 -1055 -1055 -1055 -1055 -1055 -1055 170 177 -1055 -1055 -1055 177 -1055 -1055 -1055 -1055 -1055 232 -1055 145 0 -1055 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATAAGA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 4.0e-001 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.800000 0.200000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGATAAGA MEME-5 regular expression -------------------------------------------------------------------------------- TGATAAG[AC] -------------------------------------------------------------------------------- Time 22.25 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:4821754-4821834 8.55e-05 16_[+2(8.39e-06)]_56 chrII:2997962-2998042 7.03e-04 5_[+2(8.39e-06)]_26_[+2(8.39e-06)]_\ 23_[+2(8.39e-06)]_2 chrIV:11914598-11914678 1.08e-03 21_[+1(1.29e-05)]_51 chrIV:8914335-8914415 3.12e-04 53_[+1(1.29e-05)]_19 chrII:9498676-9498756 1.73e-01 80 chrV:15286151-15286231 4.66e-01 80 chrV:418037-418117 9.18e-04 11_[+1(1.29e-05)]_61 chrII:2587193-2587273 8.51e-07 17_[+5(2.81e-05)]_36_[+1(1.29e-05)]_\ 11 chrI:12978921-12979001 8.05e-01 80 chrIV:4213009-4213089 1.87e-06 31_[+2(8.39e-06)]_[+4(7.68e-05)]_25_\ [+4(9.64e-05)] chrX:8604313-8604393 5.65e-02 80 chrI:3296088-3296168 3.45e-02 64_[+3(6.28e-05)]_8 chrX:3695080-3695160 1.97e-03 28_[+1(1.29e-05)]_44 chrII:5932185-5932265 1.16e-03 38_[+1(1.29e-05)]_34 chrI:2273308-2273388 2.04e-04 27_[+2(8.39e-06)]_35_[+2(8.39e-06)]_\ 2 chrII:2335674-2335754 2.08e-05 25_[+1(1.29e-05)]_9_[+2(8.39e-06)]_\ 30 chrIII:9963608-9963688 1.36e-03 17_[+1(1.29e-05)]_25_[+1(1.29e-05)]_\ 22 chrX:1454002-1454082 4.86e-05 17_[+1(1.29e-05)]_55 chrV:7748159-7748239 9.58e-01 80 chrIII:3377274-3377354 1.07e-03 14_[+1(1.29e-05)]_44_[+1(1.29e-05)]_\ 6 chrIII:1414055-1414135 2.06e-03 52_[+1(1.29e-05)]_20 chrI:12055033-12055113 5.30e-04 33_[+1(1.29e-05)]_39 chrII:1143335-1143415 4.77e-05 21_[+1(1.29e-05)]_51 chrII:2832253-2832333 2.74e-04 67_[+2(8.39e-06)]_5 chrIV:10469669-10469749 1.02e-01 80 chrIV:4094481-4094561 7.69e-04 34_[+1(1.29e-05)]_38 chrX:14610232-14610312 2.91e-06 30_[+1(1.29e-05)]_42 chrIII:4506931-4507011 4.92e-03 68_[+1(1.29e-05)]_4 chrV:1176583-1176663 3.96e-04 25_[+2(8.39e-06)]_17_[+2(8.39e-06)]_\ 22 chrIV:1868378-1868458 7.94e-05 23_[+1(1.29e-05)]_15_[+1(1.29e-05)]_\ 26 chrI:11286-11366 1.28e-03 51_[+1(1.29e-05)]_21 chrX:15622181-15622261 3.89e-07 45_[+2(8.39e-06)]_6_[+3(3.73e-05)]_\ 13 chrII:2998175-2998255 5.35e-05 15_[+2(8.39e-06)]_20_[+2(8.39e-06)]_\ 29 chrV:12004805-12004885 8.42e-02 33_[+4(7.68e-05)]_39 chrV:13659761-13659841 5.23e-01 80 chrX:3567028-3567108 8.96e-01 80 chrX:10306430-10306510 9.48e-06 20_[+3(3.73e-05)]_1_[+2(8.39e-06)]_\ 43 chrIV:10463307-10463387 2.81e-03 1_[+4(7.68e-05)]_71 chrI:2858870-2858950 1.37e-03 14_[+1(1.29e-05)]_58 chrV:10562931-10563011 8.47e-03 47_[+1(7.33e-05)]_2_[+2(2.70e-05)]_\ 15 chrX:3403403-3403483 2.52e-01 80 chrIV:12197843-12197923 1.66e-02 29_[+5(2.81e-05)]_43 chrV:10333978-10334058 3.95e-02 80 chrII:8387114-8387194 2.81e-01 80 chrII:3684882-3684962 7.89e-04 31_[+1(1.29e-05)]_41 chrV:8269975-8270055 7.43e-01 80 chrX:1541186-1541266 3.20e-03 31_[+1(1.29e-05)]_41 chrIII:4493554-4493634 2.76e-03 20_[+5(2.81e-05)]_52 chrV:17845791-17845871 8.86e-05 28_[+2(8.39e-06)]_10_[+1(1.29e-05)]_\ 26 chrV:2731220-2731300 4.09e-02 19_[+5(2.81e-05)]_53 chrV:13012075-13012155 1.71e-02 29_[+4(3.02e-05)]_43 chrIV:8262892-8262972 9.17e-01 80 chrIV:2193204-2193284 7.54e-04 14_[+2(8.39e-06)]_30_[+2(4.43e-05)]_\ 20 chrIII:11684941-11685021 2.96e-05 14_[+4(7.68e-05)]_41_[+1(1.29e-05)]_\ 9 chrX:6664278-6664358 5.29e-03 72_[+1(1.29e-05)] chrII:1663644-1663724 3.81e-04 43_[+2(8.39e-06)]_1_[+2(4.43e-05)]_\ 20 chrV:15499170-15499250 1.49e-04 68_[+2(8.39e-06)]_4 chrIII:12020233-12020313 1.36e-04 23_[+1(1.29e-05)]_49 chrII:2975688-2975768 1.54e-06 12_[+1(1.29e-05)]_37_[+5(4.71e-05)]_\ 15 chrI:10776530-10776610 8.61e-01 80 chrX:10639592-10639672 8.47e-04 55_[+1(1.29e-05)]_17 chrII:5512650-5512730 3.21e-03 55_[+5(2.81e-05)]_17 chrIV:10511667-10511747 1.21e-03 48_[+1(1.29e-05)]_24 chrIII:6124811-6124891 3.81e-04 25_[+1(1.29e-05)]_47 chrV:19421311-19421391 2.14e-05 2_[+1(1.29e-05)]_33_[+2(8.39e-06)]_\ 29 chrX:3408934-3409014 2.74e-01 80 chrV:2308400-2308480 4.40e-01 80 chrX:14793454-14793534 1.13e-01 80 chrX:2836925-2837005 9.05e-03 8_[+4(3.02e-05)]_64 chrIV:16168170-16168250 6.80e-01 80 chrV:18576299-18576379 8.21e-01 80 chrV:7140603-7140683 2.24e-04 16_[+1(1.29e-05)]_56 chrI:1226313-1226393 6.92e-03 34_[+4(3.02e-05)]_38 chrII:10302813-10302893 5.23e-01 80 chrV:11650941-11651021 1.17e-01 80 chrV:6706957-6707037 2.08e-05 [+4(7.68e-05)]_23_[+1(1.29e-05)]_41 chrIII:356489-356569 4.90e-04 15_[+2(8.39e-06)]_57 chrIII:4502974-4503054 2.52e-03 80 chrV:19533669-19533749 1.64e-04 41_[+1(1.29e-05)]_31 chrI:9047131-9047211 1.78e-03 26_[+4(3.02e-05)]_46 chrIV:3613395-3613475 6.02e-04 43_[+1(7.33e-05)]_10_[+3(3.73e-05)]_\ 11 chrX:7291417-7291497 2.91e-01 80 chrIV:5659016-5659096 1.04e-01 80 chrIV:11620988-11621068 5.46e-04 65_[+1(1.29e-05)]_7 chrIII:6179203-6179283 6.48e-02 52_[+1(8.22e-05)]_20 chrI:1914067-1914147 3.35e-02 70_[+5(2.81e-05)]_2 chrV:2130043-2130123 1.73e-01 80 chrIII:11197452-11197532 3.32e-01 80 chrII:2610285-2610365 5.41e-01 80 chrII:15251839-15251919 4.91e-02 80 chrX:10479297-10479377 1.03e-01 80 chrII:10553514-10553594 8.98e-03 72_[+1(1.29e-05)] chrIII:353789-353869 3.06e-04 36_[+1(1.29e-05)]_36 chrII:5185110-5185190 6.65e-01 80 chrV:6523048-6523128 3.05e-01 80 chrIII:2948835-2948915 7.32e-06 20_[+1(1.29e-05)]_22_[+5(9.58e-05)]_\ 4_[+5(2.81e-05)]_10 chrV:10802217-10802297 6.08e-01 80 chrIII:13607940-13608020 2.55e-01 49_[+4(3.02e-05)]_23 chrV:3633603-3633683 1.78e-02 58_[+1(7.33e-05)]_14 chrIV:8032323-8032403 4.88e-02 5_[+5(2.81e-05)]_67 chrX:16260414-16260494 2.95e-05 56_[+1(1.29e-05)]_16 chrIII:3571516-3571596 3.25e-01 80 chrV:11941847-11941927 8.47e-02 27_[+4(3.02e-05)]_45 chrX:16677557-16677637 7.59e-01 80 chrIII:9488915-9488995 2.02e-04 2_[+2(8.39e-06)]_70 chrI:6585541-6585621 5.23e-01 80 chrIII:10702687-10702767 2.35e-05 27_[+1(1.29e-05)]_45 chrII:2913818-2913898 6.38e-01 80 chrII:11571381-11571461 4.93e-04 59_[+1(1.29e-05)]_13 chrIII:2712910-2712990 7.08e-04 49_[+1(1.29e-05)]_23 chrV:3713629-3713709 8.52e-06 9_[+3(3.73e-05)]_[+1(1.29e-05)]_55 chrV:1456775-1456855 8.66e-01 80 chrII:6927234-6927314 3.20e-01 80 chrX:11515503-11515583 6.45e-01 80 chrIV:11913372-11913452 8.17e-02 80 chrII:5104233-5104313 2.88e-01 80 chrIII:12327630-12327710 5.78e-01 80 chrI:13446859-13446939 9.98e-04 50_[+1(1.29e-05)]_22 chrIII:11265072-11265152 2.01e-03 22_[+1(1.29e-05)]_17_[+1(1.29e-05)]_\ 25 chrV:15354838-15354918 2.10e-02 80 chrIII:9704566-9704646 7.47e-04 23_[+1(1.29e-05)]_49 chrIII:11834320-11834400 2.76e-01 80 chrII:4925524-4925604 5.87e-03 13_[+5(2.81e-05)]_59 chrX:11047384-11047464 1.12e-01 18_[+4(3.02e-05)]_54 chrX:8421747-8421827 9.82e-02 3_[+4(7.68e-05)]_9_[+4(7.68e-05)]_\ 52 chrX:5106422-5106502 9.04e-01 80 chrI:4679558-4679638 5.27e-04 42_[+1(1.29e-05)]_30 chrIV:8263091-8263171 8.65e-01 80 chrX:3290234-3290314 8.40e-01 80 chrI:3159300-3159380 2.60e-01 80 chrIV:12601127-12601207 7.56e-02 14_[+4(7.68e-05)]_58 chrII:3786708-3786788 2.58e-02 80 chrII:10554230-10554310 2.60e-04 57_[+1(1.29e-05)]_15 chrV:13044322-13044402 6.48e-01 80 chrX:2695140-2695220 9.83e-02 80 chrIII:13625798-13625878 7.69e-01 80 chrV:333813-333893 1.70e-01 80 chrIII:5764179-5764259 1.31e-06 47_[+2(8.39e-06)]_25 chrV:13212719-13212799 2.00e-01 80 chrI:2253542-2253622 1.61e-03 57_[+1(1.29e-05)]_15 chrIII:1392887-1392967 3.43e-01 80 chrIV:6880517-6880597 9.39e-02 80 chrI:12570991-12571071 3.19e-02 43_[+3(6.28e-05)]_29 chrX:1011579-1011659 1.21e-01 80 chrII:5575084-5575164 7.16e-02 80 chrV:18576509-18576589 9.95e-01 80 chrII:12790040-12790120 1.82e-04 34_[+2(8.39e-06)]_38 chrI:4653778-4653858 3.52e-04 9_[+1(1.29e-05)]_63 chrI:3672719-3672799 4.76e-02 80 chrIII:9442932-9443012 4.92e-01 80 chrV:10693901-10693981 6.65e-03 80 chrV:17662446-17662526 4.90e-01 80 chrII:7060389-7060469 1.26e-01 80 chrX:11681030-11681110 7.05e-01 80 chrX:7296473-7296553 8.93e-02 80 chrV:15298729-15298809 6.99e-02 30_[+3(3.73e-05)]_42 chrX:5846300-5846380 7.78e-02 80 chrV:474644-474724 9.20e-01 80 chrX:14780427-14780507 1.96e-01 80 chrI:14276771-14276851 2.59e-01 80 chrI:3720865-3720945 1.68e-03 37_[+1(1.29e-05)]_35 chrIII:6592409-6592489 5.88e-03 47_[+4(7.68e-05)]_10_[+3(3.73e-05)]_\ 7 chrX:15544857-15544937 1.15e-02 52_[+1(7.33e-05)]_20 chrV:5512745-5512825 2.08e-01 62_[+5(9.58e-05)]_10 chrX:11679743-11679823 3.83e-01 80 chrII:9482654-9482734 2.45e-02 65_[+3(6.28e-05)]_7 chrIII:6850339-6850419 2.34e-01 80 chrII:10647232-10647312 1.57e-01 45_[+4(3.02e-05)]_27 chrI:7480234-7480314 4.05e-04 55_[+1(1.29e-05)]_17 chrIII:10421856-10421936 3.70e-05 14_[+1(1.29e-05)]_58 chrII:4590638-4590718 9.20e-01 80 chrV:17721870-17721950 1.01e-03 65_[+4(9.64e-05)]_7 chrIV:3988794-3988874 3.24e-03 12_[+4(9.64e-05)]_12_[+5(4.71e-05)]_\ 40 chrV:5816571-5816651 7.16e-02 80 chrV:6413230-6413310 5.12e-01 80 chrIV:9648158-9648238 2.06e-04 54_[+2(8.39e-06)]_18 chrI:1341339-1341419 1.70e-01 80 chrI:13817702-13817782 5.37e-04 20_[+1(1.29e-05)]_52 chrIV:12834075-12834155 1.65e-01 47_[+4(7.68e-05)]_25 chrIV:5087028-5087108 2.75e-01 80 chrX:11790777-11790857 4.62e-02 62_[+1(7.33e-05)]_10 chrV:1132377-1132457 9.72e-01 80 chrX:7733579-7733659 8.65e-01 80 chrV:11009276-11009356 5.24e-01 80 chrIII:8879134-8879214 2.39e-02 58_[+3(3.73e-05)]_14 chrX:14003629-14003709 1.04e-01 80 chrX:6129430-6129510 8.49e-05 1_[+4(3.02e-05)]_24_[+1(2.18e-05)]_\ 39 chrI:5033383-5033463 3.35e-02 27_[+5(4.71e-05)]_45 chrII:7277396-7277476 5.07e-02 19_[+4(3.02e-05)]_53 chrX:9295632-9295712 9.88e-03 21_[+4(9.64e-05)]_51 chrI:3019710-3019790 3.81e-04 65_[+2(8.39e-06)]_7 chrIV:12269695-12269775 1.79e-01 80 chrV:10968062-10968142 1.99e-02 63_[+1(7.33e-05)]_9 chrV:19050667-19050747 4.51e-01 80 chrII:5804137-5804217 7.02e-01 80 chrIII:4152051-4152131 5.27e-01 80 chrII:12726842-12726922 8.57e-01 80 chrV:8217913-8217993 3.95e-01 80 chrV:3632470-3632550 1.83e-02 80 chrX:2070713-2070793 1.48e-01 46_[+3(3.73e-05)]_26 chrIII:8229286-8229366 4.59e-01 80 chrV:5821873-5821953 3.18e-02 [+5(2.81e-05)]_72 chrX:7316702-7316782 3.02e-01 80 chrIV:10331999-10332079 7.27e-02 80 chrIV:3012529-3012609 2.85e-03 40_[+3(3.73e-05)]_32 chrX:1272679-1272759 4.11e-01 80 chrIV:3899999-3900079 8.65e-02 19_[+4(9.64e-05)]_53 chrV:4024911-4024991 1.15e-01 80 chrV:6488938-6489018 3.00e-01 80 chrII:12053267-12053347 5.08e-05 49_[+3(3.73e-05)]_[+1(1.29e-05)]_15 chrIII:1323735-1323815 1.04e-03 2_[+5(2.81e-05)]_9_[+4(7.68e-05)]_\ 53 chrI:5895486-5895566 5.31e-04 26_[+1(1.29e-05)]_46 chrV:19532253-19532333 1.53e-01 80 chrIV:1727729-1727809 7.29e-01 80 chrI:6836832-6836912 9.53e-01 80 chrII:5512851-5512931 4.79e-02 80 chrII:7639346-7639426 6.33e-01 80 chrIV:8542349-8542429 3.69e-04 49_[+4(3.02e-05)]_4_[+3(3.73e-05)]_\ 11 chrV:3716445-3716525 7.41e-04 45_[+1(1.29e-05)]_27 chrII:11427455-11427535 8.99e-04 67_[+1(2.18e-05)]_5 chrV:1157723-1157803 6.34e-01 80 chrV:13377340-13377420 1.08e-02 46_[+3(3.73e-05)]_26 chrIV:5544804-5544884 3.21e-01 80 chrIV:14799283-14799363 1.07e-01 12_[+3(3.73e-05)]_60 chrII:12816905-12816985 7.47e-01 80 chrX:6609440-6609520 4.16e-01 80 chrIV:386735-386815 4.60e-01 80 chrII:6615423-6615503 9.05e-02 80 chrII:10546086-10546166 7.28e-01 80 chrIII:12658775-12658855 1.40e-01 80 chrX:1459632-1459712 8.87e-01 80 chrII:11966828-11966908 9.22e-01 80 chrV:12797070-12797150 2.64e-01 80 chrV:14196608-14196688 5.46e-04 23_[+1(1.29e-05)]_49 chrX:3729123-3729203 2.84e-01 80 chrX:14500735-14500815 9.79e-01 80 chrII:7944538-7944618 1.82e-02 80 chrI:2607001-2607081 7.85e-05 23_[+2(8.39e-06)]_20_[+2(8.39e-06)]_\ 21 chrIII:8326193-8326273 1.70e-02 44_[+5(2.81e-05)]_28 chrV:8651508-8651588 3.44e-01 80 chrX:1478116-1478196 1.22e-01 16_[+3(3.73e-05)]_56 chrII:5892890-5892970 2.33e-01 80 chrX:10480717-10480797 7.36e-01 80 chrV:6220877-6220957 2.59e-01 80 chrII:14256140-14256220 5.64e-02 80 chrIV:2768304-2768384 6.85e-01 80 chrIV:297007-297087 5.97e-03 8_[+1(7.33e-05)]_64 chrX:15345845-15345925 4.71e-02 6_[+1(7.33e-05)]_66 chrIII:3982480-3982560 2.16e-03 40_[+1(1.29e-05)]_32 chrX:440567-440647 7.23e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************