******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ama-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:6157592-6157672 1.0000 80 chrX:5825483-5825563 1.0000 80 chrX:4964495-4964575 1.0000 80 chrI:6742082-6742162 1.0000 80 chrIV:10865100-10865180 1.0000 80 chrV:14653664-14653744 1.0000 80 chrIII:4276459-4276539 1.0000 80 chrII:7093616-7093696 1.0000 80 chrI:8982365-8982445 1.0000 80 chrIV:6647071-6647151 1.0000 80 chrV:16042014-16042094 1.0000 80 chrII:9163553-9163633 1.0000 80 chrII:3000928-3001008 1.0000 80 chrIII:9353276-9353356 1.0000 80 chrI:4949624-4949704 1.0000 80 chrIV:13888127-13888207 1.0000 80 chrII:2136238-2136318 1.0000 80 chrIII:9962918-9962998 1.0000 80 chrV:7226035-7226115 1.0000 80 chrI:3897826-3897906 1.0000 80 chrV:4958423-4958503 1.0000 80 chrV:8793104-8793184 1.0000 80 chrIV:5562027-5562107 1.0000 80 chrIII:9167839-9167919 1.0000 80 chrIII:5107247-5107327 1.0000 80 chrI:2735251-2735331 1.0000 80 chrI:11776900-11776980 1.0000 80 chrII:9258713-9258793 1.0000 80 chrIV:6978484-6978564 1.0000 80 chrIII:835335-835415 1.0000 80 chrV:16367729-16367809 1.0000 80 chrII:9162363-9162443 1.0000 80 chrIII:12595817-12595897 1.0000 80 chrIV:1111145-1111225 1.0000 80 chrV:8040421-8040501 1.0000 80 chrV:12353058-12353138 1.0000 80 chrII:8583167-8583247 1.0000 80 chrI:6069789-6069869 1.0000 80 chrX:6618412-6618492 1.0000 80 chrX:5826313-5826393 1.0000 80 chrX:6617808-6617888 1.0000 80 chrI:6287744-6287824 1.0000 80 chrV:11345002-11345082 1.0000 80 chrIII:8161093-8161173 1.0000 80 chrX:3122790-3122870 1.0000 80 chrII:6947457-6947537 1.0000 80 chrII:5712159-5712239 1.0000 80 chrII:9059267-9059347 1.0000 80 chrIV:5982622-5982702 1.0000 80 chrIV:8334772-8334852 1.0000 80 chrII:2452711-2452791 1.0000 80 chrI:5679367-5679447 1.0000 80 chrV:10714462-10714542 1.0000 80 chrV:8613610-8613690 1.0000 80 chrX:6617203-6617283 1.0000 80 chrII:11537654-11537734 1.0000 80 chrIV:9773608-9773688 1.0000 80 chrIV:1915328-1915408 1.0000 80 chrI:3714664-3714744 1.0000 80 chrIV:5985698-5985778 1.0000 80 chrX:12168882-12168962 1.0000 80 chrIII:7732430-7732510 1.0000 80 chrII:13817606-13817686 1.0000 80 chrV:12812029-12812109 1.0000 80 chrV:19965765-19965845 1.0000 80 chrIII:8803108-8803188 1.0000 80 chrI:10179886-10179966 1.0000 80 chrIII:11936826-11936906 1.0000 80 chrX:12169509-12169589 1.0000 80 chrV:12354553-12354633 1.0000 80 chrX:7221445-7221525 1.0000 80 chrI:12062110-12062190 1.0000 80 chrV:6788142-6788222 1.0000 80 chrIII:7738638-7738718 1.0000 80 chrIV:8333736-8333816 1.0000 80 chrII:14405625-14405705 1.0000 80 chrV:6220874-6220954 1.0000 80 chrI:7473987-7474067 1.0000 80 chrI:9785587-9785667 1.0000 80 chrV:8010972-8011052 1.0000 80 chrIV:6565083-6565163 1.0000 80 chrX:6622649-6622729 1.0000 80 chrX:11375592-11375672 1.0000 80 chrIII:8874003-8874083 1.0000 80 chrIV:6646407-6646487 1.0000 80 chrIV:13036100-13036180 1.0000 80 chrIII:9081138-9081218 1.0000 80 chrII:9260074-9260154 1.0000 80 chrI:3988888-3988968 1.0000 80 chrV:14783950-14784030 1.0000 80 chrIV:16485859-16485939 1.0000 80 chrX:12693182-12693262 1.0000 80 chrIV:8334503-8334583 1.0000 80 chrX:13955417-13955497 1.0000 80 chrI:11775845-11775925 1.0000 80 chrIII:9769888-9769968 1.0000 80 chrIV:9464608-9464688 1.0000 80 chrII:14407458-14407538 1.0000 80 chrV:19521072-19521152 1.0000 80 chrII:12197698-12197778 1.0000 80 chrIII:9463209-9463289 1.0000 80 chrV:6098792-6098872 1.0000 80 chrI:4136952-4137032 1.0000 80 chrI:5302413-5302493 1.0000 80 chrI:11075511-11075591 1.0000 80 chrII:11889810-11889890 1.0000 80 chrV:6227335-6227415 1.0000 80 chrV:13387598-13387678 1.0000 80 chrI:8134142-8134222 1.0000 80 chrII:10367311-10367391 1.0000 80 chrI:9492193-9492273 1.0000 80 chrII:4516528-4516608 1.0000 80 chrX:16944111-16944191 1.0000 80 chrII:7155495-7155575 1.0000 80 chrIV:8188933-8189013 1.0000 80 chrX:15268687-15268767 1.0000 80 chrI:3318438-3318518 1.0000 80 chrII:1235020-1235100 1.0000 80 chrI:6844731-6844811 1.0000 80 chrII:13492882-13492962 1.0000 80 chrV:11193580-11193660 1.0000 80 chrIII:4497298-4497378 1.0000 80 chrX:5674875-5674955 1.0000 80 chrII:11977528-11977608 1.0000 80 chrV:4918469-4918549 1.0000 80 chrIII:9080161-9080241 1.0000 80 chrV:9089009-9089089 1.0000 80 chrI:8398921-8399001 1.0000 80 chrIV:11528085-11528165 1.0000 80 chrIV:13030742-13030822 1.0000 80 chrX:14491147-14491227 1.0000 80 chrIV:5976558-5976638 1.0000 80 chrIV:3506124-3506204 1.0000 80 chrIV:7487774-7487854 1.0000 80 chrV:9338689-9338769 1.0000 80 chrI:3988010-3988090 1.0000 80 chrI:3712863-3712943 1.0000 80 chrX:12692121-12692201 1.0000 80 chrV:14509823-14509903 1.0000 80 chrI:7474878-7474958 1.0000 80 chrV:8039121-8039201 1.0000 80 chrII:11636809-11636889 1.0000 80 chrIII:12608390-12608470 1.0000 80 chrIV:8071289-8071369 1.0000 80 chrIII:12602713-12602793 1.0000 80 chrX:5827940-5828020 1.0000 80 chrII:4583330-4583410 1.0000 80 chrIV:8431304-8431384 1.0000 80 chrI:7015843-7015923 1.0000 80 chrIV:12089062-12089142 1.0000 80 chrV:8628967-8629047 1.0000 80 chrIV:9772461-9772541 1.0000 80 chrIV:16482836-16482916 1.0000 80 chrIII:344482-344562 1.0000 80 chrI:6843542-6843622 1.0000 80 chrIV:4447151-4447231 1.0000 80 chrIV:14822376-14822456 1.0000 80 chrIV:3764340-3764420 1.0000 80 chrX:5480228-5480308 1.0000 80 chrII:9262068-9262148 1.0000 80 chrI:2714082-2714162 1.0000 80 chrIII:12599120-12599200 1.0000 80 chrIV:6294310-6294390 1.0000 80 chrIV:3233185-3233265 1.0000 80 chrIV:14032702-14032782 1.0000 80 chrIV:12037094-12037174 1.0000 80 chrII:11979687-11979767 1.0000 80 chrX:2329067-2329147 1.0000 80 chrV:8791176-8791256 1.0000 80 chrII:11637431-11637511 1.0000 80 chrV:6533214-6533294 1.0000 80 chrV:1570067-1570147 1.0000 80 chrIV:9258726-9258806 1.0000 80 chrIV:11820777-11820857 1.0000 80 chrII:12993268-12993348 1.0000 80 chrX:13144130-13144210 1.0000 80 chrII:9285191-9285271 1.0000 80 chrIV:5977559-5977639 1.0000 80 chrI:5589741-5589821 1.0000 80 chrIII:12368974-12369054 1.0000 80 chrV:11955916-11955996 1.0000 80 chrI:1740831-1740911 1.0000 80 chrV:6228020-6228100 1.0000 80 chrX:4969418-4969498 1.0000 80 chrI:14855662-14855742 1.0000 80 chrI:8975194-8975274 1.0000 80 chrIV:2327801-2327881 1.0000 80 chrV:12063196-12063276 1.0000 80 chrX:7536247-7536327 1.0000 80 chrIII:8529235-8529315 1.0000 80 chrIII:9053381-9053461 1.0000 80 chrI:1841999-1842079 1.0000 80 chrX:8160129-8160209 1.0000 80 chrV:10712002-10712082 1.0000 80 chrX:3645979-3646059 1.0000 80 chrX:16931494-16931574 1.0000 80 chrII:13335014-13335094 1.0000 80 chrII:6848034-6848114 1.0000 80 chrII:6587262-6587342 1.0000 80 chrII:7811058-7811138 1.0000 80 chrI:6173021-6173101 1.0000 80 chrI:6847159-6847239 1.0000 80 chrI:8135833-8135913 1.0000 80 chrIV:8431746-8431826 1.0000 80 chrIV:16382115-16382195 1.0000 80 chrI:378873-378953 1.0000 80 chrV:14092608-14092688 1.0000 80 chrI:13576568-13576648 1.0000 80 chrIV:14096665-14096745 1.0000 80 chrII:11749339-11749419 1.0000 80 chrIII:8136751-8136831 1.0000 80 chrII:9486010-9486090 1.0000 80 chrIII:4281243-4281323 1.0000 80 chrI:5874112-5874192 1.0000 80 chrIII:11090343-11090423 1.0000 80 chrIV:14956831-14956911 1.0000 80 chrV:11344274-11344354 1.0000 80 chrII:7812547-7812627 1.0000 80 chrI:12919617-12919697 1.0000 80 chrX:4526708-4526788 1.0000 80 chrIV:3336764-3336844 1.0000 80 chrIV:1711280-1711360 1.0000 80 chrX:9952390-9952470 1.0000 80 chrII:14404452-14404532 1.0000 80 chrI:8109548-8109628 1.0000 80 chrIV:3233933-3234013 1.0000 80 chrV:12192445-12192525 1.0000 80 chrI:9988576-9988656 1.0000 80 chrIV:13036299-13036379 1.0000 80 chrI:14758946-14759026 1.0000 80 chrIII:12906868-12906948 1.0000 80 chrII:8603696-8603776 1.0000 80 chrI:9372971-9373051 1.0000 80 chrV:1158304-1158384 1.0000 80 chrX:6252400-6252480 1.0000 80 chrIII:5882480-5882560 1.0000 80 chrIII:343934-344014 1.0000 80 chrII:8790162-8790242 1.0000 80 chrII:11974839-11974919 1.0000 80 chrX:4961456-4961536 1.0000 80 chrI:7472481-7472561 1.0000 80 chrIV:11594202-11594282 1.0000 80 chrI:381686-381766 1.0000 80 chrIII:11921811-11921891 1.0000 80 chrX:12171825-12171905 1.0000 80 chrX:11059905-11059985 1.0000 80 chrIII:7140482-7140562 1.0000 80 chrIV:8226605-8226685 1.0000 80 chrIII:7141451-7141531 1.0000 80 chrIII:11091043-11091123 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ama-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ama-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.288 C 0.211 G 0.216 T 0.284 Background letter frequencies (from file dataset with add-one prior applied): A 0.288 C 0.211 G 0.216 T 0.284 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CCTCYTCC MEME-1 width = 8 sites = 13 llr = 127 E-value = 2.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCTCYTCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a7:a6:a9 probability G :1::1::: matrix T :2a:3a:1 bits 2.2 * * * 2.0 * * * 1.8 * ** *** 1.6 * ** *** Relative 1.3 * ** *** Entropy 1.1 * ** *** (14.1 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCTCCTCC consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCYTCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:7812547-7812627 23 7.12e-06 TCAACATCGT CCTCCTCC CTTTTCTTAT chrIV:14032702-14032782 45 7.12e-06 CACCCAGCGC CCTCCTCC TTCCAAACAA chrIV:14822376-14822456 30 7.12e-06 GGATGCTCCT CCTCCTCC TCTCATTTGT chrX:12692121-12692201 5 7.12e-06 CTCT CCTCCTCC TTCTCTCCCT chrV:4918469-4918549 17 7.12e-06 GCATCCACCA CCTCCTCC GGATGGGAAC chrII:5712159-5712239 5 1.67e-05 TGAT CCTCTTCC ACTTTCTATT chrV:4958423-4958503 3 1.67e-05 AT CCTCTTCC AACACTAATT chrIII:835335-835415 2 2.63e-05 T CTTCCTCC TCAACAGTTG chrI:8975194-8975274 7 3.36e-05 TCTTCT CCTCGTCC TTTGATACGA chrIV:3336764-3336844 52 4.09e-05 CTTCGATCGG CGTCCTCC CTGAGACAAT chrIV:9258726-9258806 36 5.37e-05 AGCCCCTTGT CTTCTTCC TATTTCTTCA chrI:9785587-9785667 11 5.37e-05 ATTTTGAAAT CTTCTTCC TAATTGCTGC chrI:9988576-9988656 60 6.33e-05 ACGTTTGACT CCTCCTCT TCTTGCTAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCYTCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:7812547-7812627 7.1e-06 22_[+1]_50 chrIV:14032702-14032782 7.1e-06 44_[+1]_28 chrIV:14822376-14822456 7.1e-06 29_[+1]_43 chrX:12692121-12692201 7.1e-06 4_[+1]_68 chrV:4918469-4918549 7.1e-06 16_[+1]_56 chrII:5712159-5712239 1.7e-05 4_[+1]_68 chrV:4958423-4958503 1.7e-05 2_[+1]_70 chrIII:835335-835415 2.6e-05 1_[+1]_71 chrI:8975194-8975274 3.4e-05 6_[+1]_66 chrIV:3336764-3336844 4.1e-05 51_[+1]_21 chrIV:9258726-9258806 5.4e-05 35_[+1]_37 chrI:9785587-9785667 5.4e-05 10_[+1]_62 chrI:9988576-9988656 6.3e-05 59_[+1]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCYTCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCTCYTCC width=8 seqs=13 chrII:7812547-7812627 ( 23) CCTCCTCC 1 chrIV:14032702-14032782 ( 45) CCTCCTCC 1 chrIV:14822376-14822456 ( 30) CCTCCTCC 1 chrX:12692121-12692201 ( 5) CCTCCTCC 1 chrV:4918469-4918549 ( 17) CCTCCTCC 1 chrII:5712159-5712239 ( 5) CCTCTTCC 1 chrV:4958423-4958503 ( 3) CCTCTTCC 1 chrIII:835335-835415 ( 2) CTTCCTCC 1 chrI:8975194-8975274 ( 7) CCTCGTCC 1 chrIV:3336764-3336844 ( 52) CGTCCTCC 1 chrIV:9258726-9258806 ( 36) CTTCTTCC 1 chrI:9785587-9785667 ( 11) CTTCTTCC 1 chrI:9988576-9988656 ( 60) CCTCCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCYTCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.6191 E= 2.8e+003 -1035 225 -1035 -1035 -1035 171 -149 -30 -1035 -1035 -1035 181 -1035 225 -1035 -1035 -1035 154 -149 11 -1035 -1035 -1035 181 -1035 225 -1035 -1035 -1035 213 -1035 -188 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCYTCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 2.8e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.692308 0.076923 0.230769 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.615385 0.076923 0.307692 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.923077 0.000000 0.076923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCYTCC MEME-1 regular expression -------------------------------------------------------------------------------- C[CT]TC[CT]TCC -------------------------------------------------------------------------------- Time 5.13 secs. ******************************************************************************** ******************************************************************************** MOTIF CTTTTCTT MEME-2 width = 8 sites = 9 llr = 91 E-value = 1.9e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTTTTCTT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 8::::a:: probability G :::::::: matrix T 2aaaa:aa bits 2.2 * 2.0 * 1.8 ******* 1.6 ******* Relative 1.3 ******** Entropy 1.1 ******** (14.5 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTTTTCTT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTTCTT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:6252400-6252480 24 2.34e-05 CACTTCCATT CTTTTCTT CAATTTCTGA chrI:12919617-12919697 17 2.34e-05 TTTTACACAT CTTTTCTT GAAAAATCTC chrII:7812547-7812627 31 2.34e-05 GTCCTCCTCC CTTTTCTT ATATTTTATG chrX:16931494-16931574 20 2.34e-05 CGTCTTGATG CTTTTCTT TATGAATGCC chrIV:5977559-5977639 7 2.34e-05 TTCTTT CTTTTCTT CTCATCAACT chrIV:9258726-9258806 56 2.34e-05 TTTCTTCACT CTTTTCTT CGAAAATCCG chrX:14491147-14491227 16 2.34e-05 TTTCACGGCT CTTTTCTT AGAATGGTTA chrX:2329067-2329147 22 5.48e-05 CCGTAGTTAA TTTTTCTT TGGGAATAGG chrI:6843542-6843622 65 5.48e-05 GTAAGATTCC TTTTTCTT CAATCAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTTCTT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6252400-6252480 2.3e-05 23_[+2]_49 chrI:12919617-12919697 2.3e-05 16_[+2]_56 chrII:7812547-7812627 2.3e-05 30_[+2]_42 chrX:16931494-16931574 2.3e-05 19_[+2]_53 chrIV:5977559-5977639 2.3e-05 6_[+2]_66 chrIV:9258726-9258806 2.3e-05 55_[+2]_17 chrX:14491147-14491227 2.3e-05 15_[+2]_57 chrX:2329067-2329147 5.5e-05 21_[+2]_51 chrI:6843542-6843622 5.5e-05 64_[+2]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTTCTT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTTTTCTT width=8 seqs=9 chrX:6252400-6252480 ( 24) CTTTTCTT 1 chrI:12919617-12919697 ( 17) CTTTTCTT 1 chrII:7812547-7812627 ( 31) CTTTTCTT 1 chrX:16931494-16931574 ( 20) CTTTTCTT 1 chrIV:5977559-5977639 ( 7) CTTTTCTT 1 chrIV:9258726-9258806 ( 56) CTTTTCTT 1 chrX:14491147-14491227 ( 16) CTTTTCTT 1 chrX:2329067-2329147 ( 22) TTTTTCTT 1 chrI:6843542-6843622 ( 65) TTTTTCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTTCTT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.1193 E= 1.9e+004 -982 188 -982 -36 -982 -982 -982 181 -982 -982 -982 181 -982 -982 -982 181 -982 -982 -982 181 -982 224 -982 -982 -982 -982 -982 181 -982 -982 -982 181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTTCTT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.9e+004 0.000000 0.777778 0.000000 0.222222 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTTCTT MEME-2 regular expression -------------------------------------------------------------------------------- [CT]TTTTCTT -------------------------------------------------------------------------------- Time 9.62 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGCCGTC MEME-3 width = 8 sites = 3 llr = 36 E-value = 2.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGCCGTC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aa:aa::a probability G ::a::a:: matrix T ::::::a: bits 2.2 ****** * 2.0 ****** * 1.8 ******** 1.6 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.5 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CCGCCGTC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGTC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:8334503-8334583 64 5.54e-06 TTCCAGTCTT CCGCCGTC ATGGCTCTT chrIV:6646407-6646487 11 5.54e-06 CTAAAAATGG CCGCCGTC CAAAAAGCCA chrV:12353058-12353138 30 5.54e-06 TTCTCTATTG CCGCCGTC GCTTCAGTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGTC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:8334503-8334583 5.5e-06 63_[+3]_9 chrIV:6646407-6646487 5.5e-06 10_[+3]_62 chrV:12353058-12353138 5.5e-06 29_[+3]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGTC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGCCGTC width=8 seqs=3 chrIV:8334503-8334583 ( 64) CCGCCGTC 1 chrIV:6646407-6646487 ( 11) CCGCCGTC 1 chrV:12353058-12353138 ( 30) CCGCCGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGTC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.2293 E= 2.0e+004 -823 224 -823 -823 -823 224 -823 -823 -823 -823 220 -823 -823 224 -823 -823 -823 224 -823 -823 -823 -823 220 -823 -823 -823 -823 181 -823 224 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGTC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 2.0e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGTC MEME-3 regular expression -------------------------------------------------------------------------------- CCGCCGTC -------------------------------------------------------------------------------- Time 13.45 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCCGCCC MEME-4 width = 8 sites = 2 llr = 24 E-value = 2.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCCGCCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:aa:aaa probability G ::::a::: matrix T :a:::::: bits 2.2 * ****** 2.0 * ****** 1.8 ******** 1.6 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.5 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCCGCCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCGCCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:8431746-8431826 28 5.41e-06 GTCGCGCAGA CTCCGCCC ATAATGTAGG chrI:6843542-6843622 3 5.41e-06 GG CTCCGCCC ATTCCGCTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCGCCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:8431746-8431826 5.4e-06 27_[+4]_45 chrI:6843542-6843622 5.4e-06 2_[+4]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCGCCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCCGCCC width=8 seqs=2 chrIV:8431746-8431826 ( 28) CTCCGCCC 1 chrI:6843542-6843622 ( 3) CTCCGCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCGCCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.1555 E= 2.6e+004 -765 224 -765 -765 -765 -765 -765 181 -765 224 -765 -765 -765 224 -765 -765 -765 -765 220 -765 -765 224 -765 -765 -765 224 -765 -765 -765 224 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCGCCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.6e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCGCCC MEME-4 regular expression -------------------------------------------------------------------------------- CTCCGCCC -------------------------------------------------------------------------------- Time 17.26 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTTTGT MEME-5 width = 8 sites = 10 llr = 98 E-value = 4.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTTGT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::::: probability G ::3:::a: matrix T aa7aaa:a bits 2.2 * 2.0 * 1.8 ** ***** 1.6 ** ***** Relative 1.3 ** ***** Entropy 1.1 ******** (14.1 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTGT consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTGT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:4961456-4961536 30 3.22e-05 AAGCCAGTAG TTTTTTGT CTATCCACGA chrIII:12906868-12906948 66 3.22e-05 TTTTCCCAAC TTTTTTGT GGACATC chrI:12919617-12919697 38 3.22e-05 AAATCTCCTC TTTTTTGT CTCCAAAATT chrX:5827940-5828020 7 3.22e-05 GAATGG TTTTTTGT CAGTTTTCAA chrI:7473987-7474067 48 3.22e-05 TTAAAGTTAG TTTTTTGT TGAAATCACA chrIII:11936826-11936906 7 3.22e-05 GCTCCT TTTTTTGT GAGCCGAGTC chrI:3897826-3897906 34 3.22e-05 TCGATACTAA TTTTTTGT AGTGTTTTAT chrIV:4447151-4447231 69 5.67e-05 ATAAAGTCAG TTGTTTGT GAAC chrI:11776900-11776980 16 5.67e-05 GTCCGTACAC TTGTTTGT AGAAATCGTT chrX:4964495-4964575 20 5.67e-05 ATTATTTGCC TTGTTTGT TTCCGAAGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTGT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:4961456-4961536 3.2e-05 29_[+5]_43 chrIII:12906868-12906948 3.2e-05 65_[+5]_7 chrI:12919617-12919697 3.2e-05 37_[+5]_35 chrX:5827940-5828020 3.2e-05 6_[+5]_66 chrI:7473987-7474067 3.2e-05 47_[+5]_25 chrIII:11936826-11936906 3.2e-05 6_[+5]_66 chrI:3897826-3897906 3.2e-05 33_[+5]_39 chrIV:4447151-4447231 5.7e-05 68_[+5]_4 chrI:11776900-11776980 5.7e-05 15_[+5]_57 chrX:4964495-4964575 5.7e-05 19_[+5]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTGT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTTGT width=8 seqs=10 chrX:4961456-4961536 ( 30) TTTTTTGT 1 chrIII:12906868-12906948 ( 66) TTTTTTGT 1 chrI:12919617-12919697 ( 38) TTTTTTGT 1 chrX:5827940-5828020 ( 7) TTTTTTGT 1 chrI:7473987-7474067 ( 48) TTTTTTGT 1 chrIII:11936826-11936906 ( 7) TTTTTTGT 1 chrI:3897826-3897906 ( 34) TTTTTTGT 1 chrIV:4447151-4447231 ( 69) TTGTTTGT 1 chrI:11776900-11776980 ( 16) TTGTTTGT 1 chrX:4964495-4964575 ( 20) TTGTTTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTGT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0846 E= 4.5e+004 -997 -997 -997 181 -997 -997 -997 181 -997 -997 47 130 -997 -997 -997 181 -997 -997 -997 181 -997 -997 -997 181 -997 -997 221 -997 -997 -997 -997 181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTGT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 4.5e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.300000 0.700000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTGT MEME-5 regular expression -------------------------------------------------------------------------------- TT[TG]TTTGT -------------------------------------------------------------------------------- Time 21.04 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:6157592-6157672 9.64e-01 80 chrX:5825483-5825563 7.53e-01 80 chrX:4964495-4964575 2.26e-02 19_[+5(5.67e-05)]_53 chrI:6742082-6742162 1.00e+00 80 chrIV:10865100-10865180 8.79e-01 80 chrV:14653664-14653744 2.22e-02 80 chrIII:4276459-4276539 9.75e-01 80 chrII:7093616-7093696 7.90e-01 80 chrI:8982365-8982445 9.72e-01 80 chrIV:6647071-6647151 6.27e-01 80 chrV:16042014-16042094 1.00e+00 80 chrII:9163553-9163633 6.21e-01 80 chrII:3000928-3001008 8.64e-01 80 chrIII:9353276-9353356 1.00e+00 80 chrI:4949624-4949704 7.69e-01 80 chrIV:13888127-13888207 6.33e-01 80 chrII:2136238-2136318 2.86e-01 80 chrIII:9962918-9962998 9.67e-01 80 chrV:7226035-7226115 6.83e-01 80 chrI:3897826-3897906 1.41e-01 33_[+5(3.22e-05)]_39 chrV:4958423-4958503 3.78e-02 2_[+1(1.67e-05)]_70 chrV:8793104-8793184 9.82e-01 80 chrIV:5562027-5562107 9.85e-01 80 chrIII:9167839-9167919 4.31e-01 80 chrIII:5107247-5107327 5.23e-01 80 chrI:2735251-2735331 9.99e-01 80 chrI:11776900-11776980 6.20e-02 15_[+5(5.67e-05)]_57 chrII:9258713-9258793 8.77e-01 80 chrIV:6978484-6978564 9.45e-01 80 chrIII:835335-835415 1.46e-01 1_[+1(2.63e-05)]_71 chrV:16367729-16367809 9.45e-01 80 chrII:9162363-9162443 5.21e-01 80 chrIII:12595817-12595897 6.21e-01 80 chrIV:1111145-1111225 9.98e-01 80 chrV:8040421-8040501 1.00e+00 80 chrV:12353058-12353138 5.24e-03 29_[+3(5.54e-06)]_43 chrII:8583167-8583247 9.94e-01 80 chrI:6069789-6069869 9.45e-01 80 chrX:6618412-6618492 1.00e+00 80 chrX:5826313-5826393 3.39e-01 80 chrX:6617808-6617888 9.33e-01 80 chrI:6287744-6287824 9.79e-01 80 chrV:11345002-11345082 9.93e-01 80 chrIII:8161093-8161173 2.64e-01 80 chrX:3122790-3122870 9.08e-01 80 chrII:6947457-6947537 9.14e-01 80 chrII:5712159-5712239 6.99e-03 4_[+1(1.67e-05)]_68 chrII:9059267-9059347 1.65e-01 80 chrIV:5982622-5982702 6.88e-01 80 chrIV:8334772-8334852 2.31e-01 80 chrII:2452711-2452791 3.29e-02 80 chrI:5679367-5679447 9.41e-01 80 chrV:10714462-10714542 1.00e+00 80 chrV:8613610-8613690 9.83e-01 80 chrX:6617203-6617283 4.61e-01 80 chrII:11537654-11537734 1.58e-02 80 chrIV:9773608-9773688 9.99e-01 80 chrIV:1915328-1915408 9.93e-01 80 chrI:3714664-3714744 4.79e-01 80 chrIV:5985698-5985778 8.11e-01 80 chrX:12168882-12168962 4.27e-01 80 chrIII:7732430-7732510 6.09e-01 80 chrII:13817606-13817686 9.26e-01 80 chrV:12812029-12812109 1.97e-01 80 chrV:19965765-19965845 9.59e-01 80 chrIII:8803108-8803188 6.72e-01 80 chrI:10179886-10179966 8.26e-01 80 chrIII:11936826-11936906 3.37e-02 6_[+5(3.22e-05)]_66 chrX:12169509-12169589 5.49e-01 80 chrV:12354553-12354633 6.83e-01 80 chrX:7221445-7221525 4.50e-01 80 chrI:12062110-12062190 1.84e-03 80 chrV:6788142-6788222 6.40e-01 80 chrIII:7738638-7738718 9.92e-01 80 chrIV:8333736-8333816 3.59e-01 80 chrII:14405625-14405705 3.91e-01 80 chrV:6220874-6220954 4.30e-01 80 chrI:7473987-7474067 2.49e-02 47_[+5(3.22e-05)]_25 chrI:9785587-9785667 8.75e-03 10_[+1(5.37e-05)]_62 chrV:8010972-8011052 2.85e-01 80 chrIV:6565083-6565163 9.23e-01 80 chrX:6622649-6622729 6.37e-01 80 chrX:11375592-11375672 7.83e-01 80 chrIII:8874003-8874083 9.12e-01 80 chrIV:6646407-6646487 3.63e-03 10_[+3(5.54e-06)]_62 chrIV:13036100-13036180 8.44e-01 80 chrIII:9081138-9081218 1.00e+00 80 chrII:9260074-9260154 9.91e-01 80 chrI:3988888-3988968 1.00e+00 80 chrV:14783950-14784030 1.00e+00 80 chrIV:16485859-16485939 1.84e-01 80 chrX:12693182-12693262 8.87e-01 80 chrIV:8334503-8334583 1.89e-03 63_[+3(5.54e-06)]_9 chrX:13955417-13955497 4.82e-01 80 chrI:11775845-11775925 6.45e-01 80 chrIII:9769888-9769968 1.01e-01 80 chrIV:9464608-9464688 5.74e-01 80 chrII:14407458-14407538 9.85e-01 80 chrV:19521072-19521152 1.51e-01 80 chrII:12197698-12197778 8.00e-01 80 chrIII:9463209-9463289 9.63e-01 80 chrV:6098792-6098872 4.60e-01 80 chrI:4136952-4137032 8.60e-01 80 chrI:5302413-5302493 6.08e-01 80 chrI:11075511-11075591 2.63e-01 80 chrII:11889810-11889890 2.39e-02 80 chrV:6227335-6227415 9.24e-01 80 chrV:13387598-13387678 7.74e-01 80 chrI:8134142-8134222 2.13e-02 80 chrII:10367311-10367391 8.50e-01 80 chrI:9492193-9492273 8.60e-01 80 chrII:4516528-4516608 9.81e-01 80 chrX:16944111-16944191 1.00e+00 80 chrII:7155495-7155575 4.58e-02 80 chrIV:8188933-8189013 9.28e-01 80 chrX:15268687-15268767 9.12e-01 80 chrI:3318438-3318518 8.97e-01 80 chrII:1235020-1235100 1.06e-01 80 chrI:6844731-6844811 1.00e+00 80 chrII:13492882-13492962 7.32e-01 80 chrV:11193580-11193660 5.47e-02 80 chrIII:4497298-4497378 8.69e-01 80 chrX:5674875-5674955 9.92e-01 80 chrII:11977528-11977608 8.38e-01 80 chrV:4918469-4918549 2.06e-02 16_[+1(7.12e-06)]_56 chrIII:9080161-9080241 1.90e-01 80 chrV:9089009-9089089 9.98e-01 80 chrI:8398921-8399001 2.17e-01 80 chrIV:11528085-11528165 9.91e-01 80 chrIV:13030742-13030822 9.07e-01 80 chrX:14491147-14491227 7.00e-02 15_[+2(2.34e-05)]_57 chrIV:5976558-5976638 8.22e-01 80 chrIV:3506124-3506204 7.01e-01 80 chrIV:7487774-7487854 9.63e-01 80 chrV:9338689-9338769 5.49e-01 80 chrI:3988010-3988090 4.86e-02 80 chrI:3712863-3712943 4.75e-01 80 chrX:12692121-12692201 1.81e-04 4_[+1(7.12e-06)]_68 chrV:14509823-14509903 1.00e+00 80 chrI:7474878-7474958 6.65e-01 80 chrV:8039121-8039201 9.14e-02 80 chrII:11636809-11636889 3.91e-03 80 chrIII:12608390-12608470 8.26e-02 80 chrIV:8071289-8071369 6.58e-01 80 chrIII:12602713-12602793 9.86e-01 80 chrX:5827940-5828020 2.29e-02 6_[+5(3.22e-05)]_66 chrII:4583330-4583410 1.00e+00 80 chrIV:8431304-8431384 5.15e-01 80 chrI:7015843-7015923 6.13e-02 80 chrIV:12089062-12089142 1.64e-01 80 chrV:8628967-8629047 9.99e-01 80 chrIV:9772461-9772541 8.45e-01 80 chrIV:16482836-16482916 9.69e-01 80 chrIII:344482-344562 1.00e+00 80 chrI:6843542-6843622 2.00e-04 2_[+4(5.41e-06)]_54_[+2(5.48e-05)]_\ 8 chrIV:4447151-4447231 3.12e-01 68_[+5(5.67e-05)]_4 chrIV:14822376-14822456 4.24e-03 26_[+1(7.12e-06)]_46 chrIV:3764340-3764420 1.62e-01 80 chrX:5480228-5480308 8.47e-01 80 chrII:9262068-9262148 8.56e-01 80 chrI:2714082-2714162 9.55e-01 80 chrIII:12599120-12599200 1.13e-01 80 chrIV:6294310-6294390 9.54e-01 80 chrIV:3233185-3233265 2.19e-01 80 chrIV:14032702-14032782 3.45e-03 44_[+1(7.12e-06)]_28 chrIV:12037094-12037174 5.27e-01 80 chrII:11979687-11979767 3.49e-01 80 chrX:2329067-2329147 9.72e-02 21_[+2(5.48e-05)]_51 chrV:8791176-8791256 9.99e-01 80 chrII:11637431-11637511 9.93e-01 80 chrV:6533214-6533294 4.43e-01 80 chrV:1570067-1570147 8.58e-01 80 chrIV:9258726-9258806 2.10e-03 35_[+1(5.37e-05)]_12_[+2(2.34e-05)]_\ 17 chrIV:11820777-11820857 9.99e-01 80 chrII:12993268-12993348 9.99e-01 80 chrX:13144130-13144210 4.47e-02 80 chrII:9285191-9285271 9.48e-01 80 chrIV:5977559-5977639 4.14e-03 6_[+2(2.34e-05)]_66 chrI:5589741-5589821 1.00e+00 80 chrIII:12368974-12369054 9.60e-01 80 chrV:11955916-11955996 7.17e-02 80 chrI:1740831-1740911 8.37e-01 80 chrV:6228020-6228100 1.51e-02 80 chrX:4969418-4969498 3.00e-01 80 chrI:14855662-14855742 4.77e-01 80 chrI:8975194-8975274 2.80e-02 6_[+1(3.36e-05)]_66 chrIV:2327801-2327881 8.91e-01 80 chrV:12063196-12063276 3.39e-02 80 chrX:7536247-7536327 3.56e-03 80 chrIII:8529235-8529315 2.27e-01 80 chrIII:9053381-9053461 7.35e-01 80 chrI:1841999-1842079 3.74e-01 80 chrX:8160129-8160209 5.57e-01 80 chrV:10712002-10712082 9.99e-01 80 chrX:3645979-3646059 9.60e-01 80 chrX:16931494-16931574 2.48e-02 19_[+2(2.34e-05)]_53 chrII:13335014-13335094 9.99e-01 80 chrII:6848034-6848114 7.59e-01 80 chrII:6587262-6587342 8.44e-01 80 chrII:7811058-7811138 4.51e-01 80 chrI:6173021-6173101 9.95e-01 80 chrI:6847159-6847239 7.98e-01 80 chrI:8135833-8135913 9.45e-01 80 chrIV:8431746-8431826 4.94e-04 27_[+4(5.41e-06)]_45 chrIV:16382115-16382195 8.18e-01 80 chrI:378873-378953 2.01e-01 80 chrV:14092608-14092688 4.83e-01 80 chrI:13576568-13576648 2.03e-01 80 chrIV:14096665-14096745 9.33e-01 80 chrII:11749339-11749419 7.04e-01 80 chrIII:8136751-8136831 9.95e-01 80 chrII:9486010-9486090 9.99e-01 80 chrIII:4281243-4281323 9.88e-01 80 chrI:5874112-5874192 1.52e-01 80 chrIII:11090343-11090423 6.48e-01 80 chrIV:14956831-14956911 4.61e-01 80 chrV:11344274-11344354 8.25e-02 80 chrII:7812547-7812627 2.07e-06 22_[+1(7.12e-06)]_[+2(2.34e-05)]_42 chrI:12919617-12919697 1.77e-04 16_[+2(2.34e-05)]_13_[+5(3.22e-05)]_\ 35 chrX:4526708-4526788 6.56e-01 80 chrIV:3336764-3336844 3.50e-02 51_[+1(4.09e-05)]_21 chrIV:1711280-1711360 3.35e-01 80 chrX:9952390-9952470 2.62e-01 80 chrII:14404452-14404532 1.13e-01 80 chrI:8109548-8109628 6.99e-01 80 chrIV:3233933-3234013 8.00e-01 80 chrV:12192445-12192525 1.00e+00 80 chrI:9988576-9988656 4.03e-03 59_[+1(6.33e-05)]_13 chrIV:13036299-13036379 3.78e-03 52_[+3(1.95e-05)]_20 chrI:14758946-14759026 9.18e-01 80 chrIII:12906868-12906948 1.47e-02 65_[+5(3.22e-05)]_7 chrII:8603696-8603776 8.20e-01 80 chrI:9372971-9373051 2.38e-02 80 chrV:1158304-1158384 3.86e-01 80 chrX:6252400-6252480 5.31e-02 23_[+2(2.34e-05)]_49 chrIII:5882480-5882560 9.99e-01 80 chrIII:343934-344014 1.73e-01 80 chrII:8790162-8790242 1.55e-01 80 chrII:11974839-11974919 5.24e-01 80 chrX:4961456-4961536 2.58e-03 29_[+5(3.22e-05)]_43 chrI:7472481-7472561 1.92e-01 80 chrIV:11594202-11594282 9.29e-01 80 chrI:381686-381766 9.83e-01 80 chrIII:11921811-11921891 1.00e+00 80 chrX:12171825-12171905 2.82e-01 80 chrX:11059905-11059985 1.00e+00 80 chrIII:7140482-7140562 5.77e-01 80 chrIV:8226605-8226685 9.78e-01 80 chrIII:7141451-7141531 3.01e-01 80 chrIII:11091043-11091123 3.39e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c23n03.farnam.hpc.yale.internal ********************************************************************************