******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/aly-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:8898623-8898703 1.0000 80 chrIV:11406466-11406546 1.0000 80 chrI:3996278-3996358 1.0000 80 chrX:12848999-12849079 1.0000 80 chrV:3443155-3443235 1.0000 80 chrX:6089603-6089683 1.0000 80 chrI:2302535-2302615 1.0000 80 chrII:11622779-11622859 1.0000 80 chrIV:8334640-8334720 1.0000 80 chrIII:5108089-5108169 1.0000 80 chrII:11044461-11044541 1.0000 80 chrI:10826646-10826726 1.0000 80 chrV:16042013-16042093 1.0000 80 chrIV:7488599-7488679 1.0000 80 chrV:16042772-16042852 1.0000 80 chrIV:9109621-9109701 1.0000 80 chrIV:11407408-11407488 1.0000 80 chrIV:17105740-17105820 1.0000 80 chrII:8900429-8900509 1.0000 80 chrII:13817642-13817722 1.0000 80 chrIV:14986038-14986118 1.0000 80 chrIV:3686444-3686524 1.0000 80 chrV:8535549-8535629 1.0000 80 chrV:16040321-16040401 1.0000 80 chrIV:7486748-7486828 1.0000 80 chrI:5310549-5310629 1.0000 80 chrX:13592151-13592231 1.0000 80 chrII:15058403-15058483 1.0000 80 chrX:16614211-16614291 1.0000 80 chrIV:8333675-8333755 1.0000 80 chrIV:7487656-7487736 1.0000 80 chrIV:14823276-14823356 1.0000 80 chrV:16041063-16041143 1.0000 80 chrV:14319222-14319302 1.0000 80 chrI:11764922-11765002 1.0000 80 chrV:18720369-18720449 1.0000 80 chrX:10336705-10336785 1.0000 80 chrX:5214902-5214982 1.0000 80 chrIII:13769395-13769475 1.0000 80 chrIV:9853107-9853187 1.0000 80 chrX:7562775-7562855 1.0000 80 chrX:4741164-4741244 1.0000 80 chrII:12789597-12789677 1.0000 80 chrIV:1769193-1769273 1.0000 80 chrI:1728562-1728642 1.0000 80 chrII:3968898-3968978 1.0000 80 chrX:4813175-4813255 1.0000 80 chrIII:9772307-9772387 1.0000 80 chrIII:11759021-11759101 1.0000 80 chrII:13278654-13278734 1.0000 80 chrII:7154806-7154886 1.0000 80 chrI:11221288-11221368 1.0000 80 chrI:1738154-1738234 1.0000 80 chrIV:8851053-8851133 1.0000 80 chrI:6156815-6156895 1.0000 80 chrI:5084797-5084877 1.0000 80 chrI:8002918-8002998 1.0000 80 chrX:2698880-2698960 1.0000 80 chrX:14027113-14027193 1.0000 80 chrV:16040088-16040168 1.0000 80 chrI:7085876-7085956 1.0000 80 chrV:18671970-18672050 1.0000 80 chrI:378814-378894 1.0000 80 chrI:6153771-6153851 1.0000 80 chrIII:5675683-5675763 1.0000 80 chrIII:3443409-3443489 1.0000 80 chrX:13673738-13673818 1.0000 80 chrII:7811008-7811088 1.0000 80 chrIV:4465767-4465847 1.0000 80 chrIV:1019980-1020060 1.0000 80 chrIII:4098957-4099037 1.0000 80 chrIV:9269045-9269125 1.0000 80 chrI:9447387-9447467 1.0000 80 chrII:15007306-15007386 1.0000 80 chrV:298492-298572 1.0000 80 chrX:12407486-12407566 1.0000 80 chrIII:3623865-3623945 1.0000 80 chrII:14096947-14097027 1.0000 80 chrV:5844045-5844125 1.0000 80 chrII:13637550-13637630 1.0000 80 chrIII:4010306-4010386 1.0000 80 chrX:5205707-5205787 1.0000 80 chrI:8976453-8976533 1.0000 80 chrII:14352297-14352377 1.0000 80 chrI:13286281-13286361 1.0000 80 chrIV:3233438-3233518 1.0000 80 chrII:11566140-11566220 1.0000 80 chrI:11092051-11092131 1.0000 80 chrI:5308513-5308593 1.0000 80 chrIII:10471357-10471437 1.0000 80 chrIV:11524683-11524763 1.0000 80 chrI:8046749-8046829 1.0000 80 chrIII:10809031-10809111 1.0000 80 chrX:4744198-4744278 1.0000 80 chrI:4371001-4371081 1.0000 80 chrII:6022836-6022916 1.0000 80 chrIII:13720482-13720562 1.0000 80 chrV:11913544-11913624 1.0000 80 chrIII:13651524-13651604 1.0000 80 chrIV:11717268-11717348 1.0000 80 chrII:551619-551699 1.0000 80 chrIII:9247384-9247464 1.0000 80 chrI:4976314-4976394 1.0000 80 chrX:13948315-13948395 1.0000 80 chrI:2740245-2740325 1.0000 80 chrII:5651692-5651772 1.0000 80 chrIII:2314901-2314981 1.0000 80 chrX:10395928-10396008 1.0000 80 chrI:6173056-6173136 1.0000 80 chrIII:5720786-5720866 1.0000 80 chrIII:12470778-12470858 1.0000 80 chrV:17812273-17812353 1.0000 80 chrX:7719029-7719109 1.0000 80 chrV:13647318-13647398 1.0000 80 chrX:3459802-3459882 1.0000 80 chrII:13841215-13841295 1.0000 80 chrIII:11466798-11466878 1.0000 80 chrV:18712192-18712272 1.0000 80 chrIII:11427740-11427820 1.0000 80 chrV:20674240-20674320 1.0000 80 chrIV:11565201-11565281 1.0000 80 chrIV:5081157-5081237 1.0000 80 chrX:3259096-3259176 1.0000 80 chrIII:12883213-12883293 1.0000 80 chrX:14581631-14581711 1.0000 80 chrX:12692192-12692272 1.0000 80 chrI:7715752-7715832 1.0000 80 chrI:4745370-4745450 1.0000 80 chrI:11077710-11077790 1.0000 80 chrX:12693395-12693475 1.0000 80 chrI:2844385-2844465 1.0000 80 chrIII:10741367-10741447 1.0000 80 chrX:1120341-1120421 1.0000 80 chrX:4749329-4749409 1.0000 80 chrII:13490162-13490242 1.0000 80 chrI:7711774-7711854 1.0000 80 chrIII:4281023-4281103 1.0000 80 chrIV:7485816-7485896 1.0000 80 chrX:10927337-10927417 1.0000 80 chrIII:13092356-13092436 1.0000 80 chrV:11845034-11845114 1.0000 80 chrIII:12686081-12686161 1.0000 80 chrX:17456863-17456943 1.0000 80 chrX:13469919-13469999 1.0000 80 chrX:16602520-16602600 1.0000 80 chrIII:8964760-8964840 1.0000 80 chrI:9167299-9167379 1.0000 80 chrI:232020-232100 1.0000 80 chrX:4971549-4971629 1.0000 80 chrI:10175227-10175307 1.0000 80 chrIII:13644416-13644496 1.0000 80 chrI:11609185-11609265 1.0000 80 chrI:6151582-6151662 1.0000 80 chrI:7217376-7217456 1.0000 80 chrII:6522702-6522782 1.0000 80 chrI:9542435-9542515 1.0000 80 chrIII:12150031-12150111 1.0000 80 chrIV:10817223-10817303 1.0000 80 chrX:4620232-4620312 1.0000 80 chrV:14325039-14325119 1.0000 80 chrIII:1929328-1929408 1.0000 80 chrIV:4548246-4548326 1.0000 80 chrIII:4948805-4948885 1.0000 80 chrV:154011-154091 1.0000 80 chrV:17427965-17428045 1.0000 80 chrIV:17279704-17279784 1.0000 80 chrI:737126-737206 1.0000 80 chrIV:173195-173275 1.0000 80 chrX:5764893-5764973 1.0000 80 chrI:2888791-2888871 1.0000 80 chrIV:7489433-7489513 1.0000 80 chrIII:2305129-2305209 1.0000 80 chrX:8750995-8751075 1.0000 80 chrIII:354554-354634 1.0000 80 chrV:13396565-13396645 1.0000 80 chrI:330431-330511 1.0000 80 chrI:14103827-14103907 1.0000 80 chrIV:3233639-3233719 1.0000 80 chrV:11770105-11770185 1.0000 80 chrV:9343976-9344056 1.0000 80 chrII:8412266-8412346 1.0000 80 chrX:14228975-14229055 1.0000 80 chrX:11339579-11339659 1.0000 80 chrX:1082023-1082103 1.0000 80 chrX:5056378-5056458 1.0000 80 chrI:4175981-4176061 1.0000 80 chrII:13325321-13325401 1.0000 80 chrV:6344847-6344927 1.0000 80 chrIV:4255430-4255510 1.0000 80 chrV:12024300-12024380 1.0000 80 chrV:361499-361579 1.0000 80 chrX:15108116-15108196 1.0000 80 chrIV:9264024-9264104 1.0000 80 chrIV:7486032-7486112 1.0000 80 chrX:15613936-15614016 1.0000 80 chrIII:3499971-3500051 1.0000 80 chrII:714516-714596 1.0000 80 chrIII:1218399-1218479 1.0000 80 chrX:17315058-17315138 1.0000 80 chrX:14610505-14610585 1.0000 80 chrI:7969295-7969375 1.0000 80 chrX:2375171-2375251 1.0000 80 chrI:542335-542415 1.0000 80 chrX:601627-601707 1.0000 80 chrI:2753196-2753276 1.0000 80 chrI:933476-933556 1.0000 80 chrIV:14095783-14095863 1.0000 80 chrIV:2939481-2939561 1.0000 80 chrIII:3620848-3620928 1.0000 80 chrX:13226848-13226928 1.0000 80 chrII:8128876-8128956 1.0000 80 chrI:4200028-4200108 1.0000 80 chrI:14960452-14960532 1.0000 80 chrX:7655389-7655469 1.0000 80 chrV:7978077-7978157 1.0000 80 chrIII:3915050-3915130 1.0000 80 chrIV:5085820-5085900 1.0000 80 chrV:5846698-5846778 1.0000 80 chrI:11095898-11095978 1.0000 80 chrII:11889626-11889706 1.0000 80 chrX:5518594-5518674 1.0000 80 chrV:4667223-4667303 1.0000 80 chrI:7710048-7710128 1.0000 80 chrI:11203502-11203582 1.0000 80 chrI:7951786-7951866 1.0000 80 chrII:3054848-3054928 1.0000 80 chrIV:9563855-9563935 1.0000 80 chrI:2831559-2831639 1.0000 80 chrII:5068041-5068121 1.0000 80 chrX:7651413-7651493 1.0000 80 chrI:14076359-14076439 1.0000 80 chrIV:5941403-5941483 1.0000 80 chrX:13590841-13590921 1.0000 80 chrII:12728022-12728102 1.0000 80 chrII:3956266-3956346 1.0000 80 chrX:10373718-10373798 1.0000 80 chrI:384831-384911 1.0000 80 chrIV:2998786-2998866 1.0000 80 chrI:9475019-9475099 1.0000 80 chrIII:931569-931649 1.0000 80 chrI:3106613-3106693 1.0000 80 chrII:14249624-14249704 1.0000 80 chrI:530548-530628 1.0000 80 chrV:10717033-10717113 1.0000 80 chrII:10547454-10547534 1.0000 80 chrV:155314-155394 1.0000 80 chrII:15226452-15226532 1.0000 80 chrI:12229371-12229451 1.0000 80 chrV:16042985-16043065 1.0000 80 chrII:7676580-7676660 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_aly-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/aly-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.241 C 0.27 G 0.26 T 0.229 Background letter frequencies (from file dataset with add-one prior applied): A 0.241 C 0.27 G 0.26 T 0.229 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GAGRAGRA MEME-1 width = 8 sites = 55 llr = 415 E-value = 2.6e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGRAGRA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3a26a176 pos.-specific C :::::::1 probability G 7:84:932 matrix T :::::::: bits 2.1 * * 1.9 * * 1.7 * ** 1.5 * ** Relative 1.3 ** ** Entropy 1.1 ******* (10.9 bits) 0.9 ******* 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGAAGAA consensus A AG GG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGRAGRA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:9475019-9475099 67 1.43e-05 GTCTATGGGA GAGAAGAA ATGGGA chrV:361499-361579 64 1.43e-05 ACGGGCCGAC GAGAAGAA GAAGGCCGC chrI:330431-330511 67 1.43e-05 ACCCAAAGAC GAGAAGAA GAAGCT chrI:7711774-7711854 5 1.43e-05 GGGA GAGAAGAA GGAACACAAG chrX:1120341-1120421 51 1.43e-05 TCGAGTGTGG GAGAAGAA GGATACTCAA chrI:5308513-5308593 73 1.43e-05 ACGGCGAGAA GAGAAGAA chrIII:5108089-5108169 44 1.43e-05 GGAGCCGCTG GAGAAGAA GGACCAACTG chrI:3996278-3996358 8 1.43e-05 AAATGAG GAGAAGAA CAGCTGGAAG chrIV:3233639-3233719 66 2.97e-05 gcggcGGACG GAGGAGAA GAGAAAG chrI:9447387-9447467 26 2.97e-05 GTAGAATTTA GAGGAGAA AAGAGTCATA chrX:7651413-7651493 4 4.29e-05 GGC AAGAAGAA CGAATGCGTT chrI:7710048-7710128 6 4.29e-05 AAAAG AAGAAGAA AGGTTGAGGT chrIV:7485816-7485896 48 4.29e-05 TCTTCTTTGG AAGAAGAA CAGCTTGGAT chrX:4813175-4813255 1 4.29e-05 . aagaagaa ACTGTCGATG chrII:5068041-5068121 61 5.84e-05 TGAGCATAAA GAGAAGGA GGAGACAGAG chrI:4200028-4200108 18 5.84e-05 CTTTTTTATC GAGAAGGA CAGGGCGCCA chrIII:5675683-5675763 7 8.81e-05 GCCGCG AAGGAGAA GTATGCGGAT chrII:3054848-3054928 61 1.05e-04 AGGTGGGGAA GAGGAGGA CGGATACGGG chrIII:2305129-2305209 16 1.05e-04 AGACTATAGA GAGGAGGA AGGTTACCGC chrI:9542435-9542515 46 1.05e-04 GAAAGCGATG GAGGAGGA GTCATTGGGC chrI:10826646-10826726 69 1.05e-04 ggaagaggat gaggagga agaa chrII:8128876-8128956 65 1.32e-04 GGGAGGGAGA AAGAAGGA GGAGAGGA chrIV:17279704-17279784 61 1.32e-04 GCGCAAGCAC AAGAAGGA TCTTGCTTCC chrI:2844385-2844465 29 1.32e-04 GCAACGGGGG GAAAAGAA AAGCACCTCG chrI:7085876-7085956 67 1.32e-04 GAAGAGGCGG AAGAAGGA CAAGTC chrII:3956266-3956346 55 1.65e-04 TTTTTTTCTG GAGGAGAG GTTTAGAGCA chrX:13469919-13469999 24 1.65e-04 CCATGCCCAG GAGGAGAG GCTGGACCAC chrIII:3623865-3623945 73 1.65e-04 AGCGAGCGAC GAGAAGAC chrIV:7488599-7488679 44 1.65e-04 AGACGTATCC GAGGAGAG CGCGCTTAAA chrIV:8334640-8334720 59 1.65e-04 AGACGCATCC GAGGAGAG CGTGCTTAAA chrI:6151582-6151662 64 1.79e-04 AACAACATAA AAGAAGAG GTGTACAGC chrII:13841215-13841295 72 1.79e-04 TGGGGGAGGT AAGAAGAG G chrI:8002918-8002998 7 2.25e-04 AAAAAC GAAGAGAA TGTATCTACA chrV:16041063-16041143 61 2.25e-04 ACCATCGCCC AAGGAGGA GTTCTTCCAA chrI:2302535-2302615 60 2.25e-04 AACGGAATCG GAAGAGAA GGCTGAATGG chrI:7715752-7715832 15 2.69e-04 GGCAATCGGA GAAAAGGA GACACACTCG chrIII:2314901-2314981 43 2.69e-04 TTCATTCCAG GAAAAGGA TGGCCCGAAG chrIV:2998786-2998866 43 3.00e-04 ACATACGAGA AAGGAGAG AGTCCCCTCG chrIII:3915050-3915130 27 3.00e-04 CGAAGAAACA AAGAAGAC GAAGGGAAGA chrV:7978077-7978157 4 3.00e-04 AGG AAGAAGAC CCCACAAAAC chrI:2831559-2831639 64 3.35e-04 AATGGTGTGT GAGAAGGC CCTGTGTGT chrX:14228975-14229055 31 3.35e-04 TTTGAAGAGA GAGGAGGG TGGCAAACGT chrX:12407486-12407566 25 3.35e-04 GCGAGGGGTG GAGAAGGC AGGCGGGGCC chrII:14249624-14249704 57 3.65e-04 TCAGTAGAAA GAAAAGAG ACGCGAACGA chrV:13396565-13396645 22 3.65e-04 CACAGAAGCG AAGAAGGG GACACATCTT chrX:4741164-4741244 36 4.22e-04 ACATACAATA AAAAAGGA AAAAAAAACG chrX:10927337-10927417 46 4.41e-04 TGGAGCAAAC GAGGAGGC AACGATTGGA chrII:12728022-12728102 57 5.17e-04 CCATCCATTC GAAGAGAG CACGTCGACG chrX:1082023-1082103 9 5.17e-04 TTGATCCT GAAGAGAG CGCGCGCCGA chrX:5764893-5764973 65 5.17e-04 TAGAGACGCA GAGAAAAA TAGGGGCG chrIV:10817223-10817303 41 5.17e-04 ATCGCGGTCC AAGGAGGG CACAGCCAAG chrIV:5081157-5081237 43 5.17e-04 ACCGCCCCGC GAGAAAAA AATAATAATT chrIV:7487656-7487736 9 5.17e-04 TGAAAACA GAAAAGAC AAAAGAAATT chrV:16040321-16040401 34 6.08e-04 CATAGCCTTG GAAGAGAC TCCAGTGTCT chrV:6344847-6344927 60 6.48e-04 TCCCGGGCGG AAGAAAAA ACTGACGACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGRAGRA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:9475019-9475099 1.4e-05 66_[+1]_6 chrV:361499-361579 1.4e-05 63_[+1]_9 chrI:330431-330511 1.4e-05 66_[+1]_6 chrI:7711774-7711854 1.4e-05 4_[+1]_68 chrX:1120341-1120421 1.4e-05 50_[+1]_22 chrI:5308513-5308593 1.4e-05 72_[+1] chrIII:5108089-5108169 1.4e-05 43_[+1]_29 chrI:3996278-3996358 1.4e-05 7_[+1]_65 chrIV:3233639-3233719 3e-05 65_[+1]_7 chrI:9447387-9447467 3e-05 25_[+1]_47 chrX:7651413-7651493 4.3e-05 3_[+1]_69 chrI:7710048-7710128 4.3e-05 5_[+1]_67 chrIV:7485816-7485896 4.3e-05 47_[+1]_25 chrX:4813175-4813255 4.3e-05 [+1]_72 chrII:5068041-5068121 5.8e-05 60_[+1]_12 chrI:4200028-4200108 5.8e-05 17_[+1]_55 chrIII:5675683-5675763 8.8e-05 6_[+1]_66 chrII:3054848-3054928 0.0001 60_[+1]_12 chrIII:2305129-2305209 0.0001 15_[+1]_57 chrI:9542435-9542515 0.0001 45_[+1]_27 chrI:10826646-10826726 0.0001 68_[+1]_4 chrII:8128876-8128956 0.00013 64_[+1]_8 chrIV:17279704-17279784 0.00013 60_[+1]_12 chrI:2844385-2844465 0.00013 28_[+1]_44 chrI:7085876-7085956 0.00013 66_[+1]_6 chrII:3956266-3956346 0.00016 54_[+1]_18 chrX:13469919-13469999 0.00016 23_[+1]_49 chrIII:3623865-3623945 0.00016 72_[+1] chrIV:7488599-7488679 0.00016 43_[+1]_29 chrIV:8334640-8334720 0.00016 58_[+1]_14 chrI:6151582-6151662 0.00018 63_[+1]_9 chrII:13841215-13841295 0.00018 71_[+1]_1 chrI:8002918-8002998 0.00023 6_[+1]_66 chrV:16041063-16041143 0.00023 60_[+1]_12 chrI:2302535-2302615 0.00023 59_[+1]_13 chrI:7715752-7715832 0.00027 14_[+1]_58 chrIII:2314901-2314981 0.00027 42_[+1]_30 chrIV:2998786-2998866 0.0003 42_[+1]_30 chrIII:3915050-3915130 0.0003 26_[+1]_46 chrV:7978077-7978157 0.0003 3_[+1]_69 chrI:2831559-2831639 0.00033 63_[+1]_9 chrX:14228975-14229055 0.00033 30_[+1]_42 chrX:12407486-12407566 0.00033 24_[+1]_48 chrII:14249624-14249704 0.00036 56_[+1]_16 chrV:13396565-13396645 0.00036 21_[+1]_51 chrX:4741164-4741244 0.00042 35_[+1]_37 chrX:10927337-10927417 0.00044 45_[+1]_27 chrII:12728022-12728102 0.00052 56_[+1]_16 chrX:1082023-1082103 0.00052 8_[+1]_64 chrX:5764893-5764973 0.00052 64_[+1]_8 chrIV:10817223-10817303 0.00052 40_[+1]_32 chrIV:5081157-5081237 0.00052 42_[+1]_30 chrIV:7487656-7487736 0.00052 8_[+1]_64 chrV:16040321-16040401 0.00061 33_[+1]_39 chrV:6344847-6344927 0.00065 59_[+1]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGRAGRA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGRAGRA width=8 seqs=55 chrI:9475019-9475099 ( 67) GAGAAGAA 1 chrV:361499-361579 ( 64) GAGAAGAA 1 chrI:330431-330511 ( 67) GAGAAGAA 1 chrI:7711774-7711854 ( 5) GAGAAGAA 1 chrX:1120341-1120421 ( 51) GAGAAGAA 1 chrI:5308513-5308593 ( 73) GAGAAGAA 1 chrIII:5108089-5108169 ( 44) GAGAAGAA 1 chrI:3996278-3996358 ( 8) GAGAAGAA 1 chrIV:3233639-3233719 ( 66) GAGGAGAA 1 chrI:9447387-9447467 ( 26) GAGGAGAA 1 chrX:7651413-7651493 ( 4) AAGAAGAA 1 chrI:7710048-7710128 ( 6) AAGAAGAA 1 chrIV:7485816-7485896 ( 48) AAGAAGAA 1 chrX:4813175-4813255 ( 1) AAGAAGAA 1 chrII:5068041-5068121 ( 61) GAGAAGGA 1 chrI:4200028-4200108 ( 18) GAGAAGGA 1 chrIII:5675683-5675763 ( 7) AAGGAGAA 1 chrII:3054848-3054928 ( 61) GAGGAGGA 1 chrIII:2305129-2305209 ( 16) GAGGAGGA 1 chrI:9542435-9542515 ( 46) GAGGAGGA 1 chrI:10826646-10826726 ( 69) GAGGAGGA 1 chrII:8128876-8128956 ( 65) AAGAAGGA 1 chrIV:17279704-17279784 ( 61) AAGAAGGA 1 chrI:2844385-2844465 ( 29) GAAAAGAA 1 chrI:7085876-7085956 ( 67) AAGAAGGA 1 chrII:3956266-3956346 ( 55) GAGGAGAG 1 chrX:13469919-13469999 ( 24) GAGGAGAG 1 chrIII:3623865-3623945 ( 73) GAGAAGAC 1 chrIV:7488599-7488679 ( 44) GAGGAGAG 1 chrIV:8334640-8334720 ( 59) GAGGAGAG 1 chrI:6151582-6151662 ( 64) AAGAAGAG 1 chrII:13841215-13841295 ( 72) AAGAAGAG 1 chrI:8002918-8002998 ( 7) GAAGAGAA 1 chrV:16041063-16041143 ( 61) AAGGAGGA 1 chrI:2302535-2302615 ( 60) GAAGAGAA 1 chrI:7715752-7715832 ( 15) GAAAAGGA 1 chrIII:2314901-2314981 ( 43) GAAAAGGA 1 chrIV:2998786-2998866 ( 43) AAGGAGAG 1 chrIII:3915050-3915130 ( 27) AAGAAGAC 1 chrV:7978077-7978157 ( 4) AAGAAGAC 1 chrI:2831559-2831639 ( 64) GAGAAGGC 1 chrX:14228975-14229055 ( 31) GAGGAGGG 1 chrX:12407486-12407566 ( 25) GAGAAGGC 1 chrII:14249624-14249704 ( 57) GAAAAGAG 1 chrV:13396565-13396645 ( 22) AAGAAGGG 1 chrX:4741164-4741244 ( 36) AAAAAGGA 1 chrX:10927337-10927417 ( 46) GAGGAGGC 1 chrII:12728022-12728102 ( 57) GAAGAGAG 1 chrX:1082023-1082103 ( 9) GAAGAGAG 1 chrX:5764893-5764973 ( 65) GAGAAAAA 1 chrIV:10817223-10817303 ( 41) AAGGAGGG 1 chrIV:5081157-5081237 ( 43) GAGAAAAA 1 chrIV:7487656-7487736 ( 9) GAAAAGAC 1 chrV:16040321-16040401 ( 34) GAAGAGAC 1 chrV:6344847-6344927 ( 60) AAGAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGRAGRA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0332 E= 2.6e-003 44 -1243 137 -1243 205 -1243 -1243 -1243 -27 -1243 162 -1243 136 -1243 56 -1243 205 -1243 -1243 -1243 -214 -1243 186 -1243 144 -1243 41 -1243 136 -89 -14 -1243 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGRAGRA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 55 E= 2.6e-003 0.327273 0.000000 0.672727 0.000000 1.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.800000 0.000000 0.618182 0.000000 0.381818 0.000000 1.000000 0.000000 0.000000 0.000000 0.054545 0.000000 0.945455 0.000000 0.654545 0.000000 0.345455 0.000000 0.618182 0.145455 0.236364 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGRAGRA MEME-1 regular expression -------------------------------------------------------------------------------- [GA]A[GA][AG]AG[AG][AG] -------------------------------------------------------------------------------- Time 7.45 secs. ******************************************************************************** ******************************************************************************** MOTIF TYTTMYTY MEME-2 width = 8 sites = 31 llr = 260 E-value = 1.5e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TYTTMYTY MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::5::: pos.-specific C :5::44:5 probability G :::::::: matrix T a5aa26a5 bits 2.1 * ** * 1.9 * ** * 1.7 * ** * 1.5 * ** * Relative 1.3 * ** * Entropy 1.1 **** *** (12.1 bits) 0.9 **** *** 0.6 **** *** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTTATTT consensus T CC C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTTMYTY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:542335-542415 58 7.96e-06 GCCTCATTCG TTTTATTT CGGACTTTCG chrV:8535549-8535629 55 7.96e-06 TGTAATCCAG TTTTATTT AATGAATATT chrII:13817642-13817722 29 7.96e-06 TCGGTTTTGG TTTTATTT ACAAGGCAAA chrX:7562775-7562855 2 1.73e-05 T TCTTATTT CTCCCTTGCC chrIV:7489433-7489513 56 3.56e-05 TACACCACTT TTTTATTC CCATCATCCA chrII:11622779-11622859 42 3.56e-05 GCTCTTGCTC TTTTATTC GATCCTTGTT chrII:7676580-7676660 63 6.66e-05 GCATCcttct tcttattc tctcacatct chrI:4200028-4200108 38 6.66e-05 GGGCGCCATT TTTTACTT CATACACACC chrIV:7485816-7485896 16 6.66e-05 AGAAAAAAGT TCTTATTC CTTGTCTCCA chrIII:9247384-9247464 73 6.66e-05 CTGTCTGTGT TCTTCTTT chrIV:9109621-9109701 65 6.66e-05 TTAATCCAAA TTTTACTT GTTTGTTC chrX:12848999-12849079 8 6.66e-05 AGCTTCT TCTTCTTT GAAAAGCTCT chrX:15108116-15108196 55 7.77e-05 CCCTCCCTCC TCTTACTT CTGGTCGACC chrII:3956266-3956346 43 9.57e-05 TCTCTGTGCG TTTTTTTT TCTGGAGGAG chrX:17315058-17315138 23 9.57e-05 TTCACCGCCG TTTTCTTC TCGGCGTCTC chrI:9167299-9167379 11 9.57e-05 TTTTTCTTCT TTTTTTTT TCGTCACATT chrI:3106613-3106693 5 1.39e-04 CTCA TCTTTTTT CATAATCCTC chrI:933476-933556 60 1.39e-04 tcccactata ttttactc tctgtggctt chrX:601627-601707 23 1.39e-04 GTGCTTGGCC TTTTACTC TCGTCGTCTG chrX:5056378-5056458 59 1.39e-04 tcccactata ttttactc tctgtggctt chrI:10175227-10175307 52 1.39e-04 GCGCTCAGTG TTTTCCTT CCGTCGCCCA chrI:6173056-6173136 47 1.39e-04 GAGAGGCCTC TCTTCTTC GTCTTTTTCT chrII:15007306-15007386 1 1.39e-04 . TCTTCTTC GGCTCCTTCT chrI:6156815-6156895 21 1.39e-04 CTTCCCTCCC TCTTTTTT GTATCATGGC chrIV:7487656-7487736 49 1.64e-04 CGTACAGAGT TCTTCCTT GGCGCTTCAG chrIV:8333675-8333755 21 1.64e-04 CGTACAAAGT TCTTCCTT GACGCTTCAG chrV:8898623-8898703 17 1.64e-04 AAATATTAAT TCTTCCTT ATTCACTGTT chrX:12693395-12693475 1 1.73e-04 . TTTTTTTC GATCGACTTC chrI:6151582-6151662 5 2.30e-04 CTCC TCTTCCTC ACAAACACTG chrIII:13720482-13720562 36 2.30e-04 CCGGCCGTCC TCTTCCTC CGAGTTGCCT chrIII:13644416-13644496 63 2.53e-04 AAGACGCACC TCTTTCTC CATTCAGCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTTMYTY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:542335-542415 8e-06 57_[+2]_15 chrV:8535549-8535629 8e-06 54_[+2]_18 chrII:13817642-13817722 8e-06 28_[+2]_44 chrX:7562775-7562855 1.7e-05 1_[+2]_71 chrIV:7489433-7489513 3.6e-05 55_[+2]_17 chrII:11622779-11622859 3.6e-05 41_[+2]_31 chrII:7676580-7676660 6.7e-05 62_[+2]_10 chrI:4200028-4200108 6.7e-05 37_[+2]_35 chrIV:7485816-7485896 6.7e-05 15_[+2]_57 chrIII:9247384-9247464 6.7e-05 72_[+2] chrIV:9109621-9109701 6.7e-05 64_[+2]_8 chrX:12848999-12849079 6.7e-05 7_[+2]_65 chrX:15108116-15108196 7.8e-05 54_[+2]_18 chrII:3956266-3956346 9.6e-05 42_[+2]_30 chrX:17315058-17315138 9.6e-05 22_[+2]_50 chrI:9167299-9167379 9.6e-05 10_[+2]_62 chrI:3106613-3106693 0.00014 4_[+2]_68 chrI:933476-933556 0.00014 59_[+2]_13 chrX:601627-601707 0.00014 22_[+2]_50 chrX:5056378-5056458 0.00014 58_[+2]_14 chrI:10175227-10175307 0.00014 51_[+2]_21 chrI:6173056-6173136 0.00014 46_[+2]_26 chrII:15007306-15007386 0.00014 [+2]_72 chrI:6156815-6156895 0.00014 20_[+2]_52 chrIV:7487656-7487736 0.00016 48_[+2]_24 chrIV:8333675-8333755 0.00016 20_[+2]_52 chrV:8898623-8898703 0.00016 16_[+2]_56 chrX:12693395-12693475 0.00017 [+2]_72 chrI:6151582-6151662 0.00023 4_[+2]_68 chrIII:13720482-13720562 0.00023 35_[+2]_37 chrIII:13644416-13644496 0.00025 62_[+2]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTTMYTY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TYTTMYTY width=8 seqs=31 chrI:542335-542415 ( 58) TTTTATTT 1 chrV:8535549-8535629 ( 55) TTTTATTT 1 chrII:13817642-13817722 ( 29) TTTTATTT 1 chrX:7562775-7562855 ( 2) TCTTATTT 1 chrIV:7489433-7489513 ( 56) TTTTATTC 1 chrII:11622779-11622859 ( 42) TTTTATTC 1 chrII:7676580-7676660 ( 63) TCTTATTC 1 chrI:4200028-4200108 ( 38) TTTTACTT 1 chrIV:7485816-7485896 ( 16) TCTTATTC 1 chrIII:9247384-9247464 ( 73) TCTTCTTT 1 chrIV:9109621-9109701 ( 65) TTTTACTT 1 chrX:12848999-12849079 ( 8) TCTTCTTT 1 chrX:15108116-15108196 ( 55) TCTTACTT 1 chrII:3956266-3956346 ( 43) TTTTTTTT 1 chrX:17315058-17315138 ( 23) TTTTCTTC 1 chrI:9167299-9167379 ( 11) TTTTTTTT 1 chrI:3106613-3106693 ( 5) TCTTTTTT 1 chrI:933476-933556 ( 60) TTTTACTC 1 chrX:601627-601707 ( 23) TTTTACTC 1 chrX:5056378-5056458 ( 59) TTTTACTC 1 chrI:10175227-10175307 ( 52) TTTTCCTT 1 chrI:6173056-6173136 ( 47) TCTTCTTC 1 chrII:15007306-15007386 ( 1) TCTTCTTC 1 chrI:6156815-6156895 ( 21) TCTTTTTT 1 chrIV:7487656-7487736 ( 49) TCTTCCTT 1 chrIV:8333675-8333755 ( 21) TCTTCCTT 1 chrV:8898623-8898703 ( 17) TCTTCCTT 1 chrX:12693395-12693475 ( 1) TTTTTTTC 1 chrI:6151582-6151662 ( 5) TCTTCCTC 1 chrIII:13720482-13720562 ( 36) TCTTCCTC 1 chrIII:13644416-13644496 ( 63) TCTTTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTTMYTY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.1915 E= 1.5e+001 -1160 -1160 -1160 213 -1160 93 -1160 108 -1160 -1160 -1160 213 -1160 -1160 -1160 213 91 39 -1160 -24 -1160 63 -1160 134 -1160 -1160 -1160 213 -1160 74 -1160 126 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTTMYTY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 1.5e+001 0.000000 0.000000 0.000000 1.000000 0.000000 0.516129 0.000000 0.483871 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.451613 0.354839 0.000000 0.193548 0.000000 0.419355 0.000000 0.580645 0.000000 0.000000 0.000000 1.000000 0.000000 0.451613 0.000000 0.548387 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTTMYTY MEME-2 regular expression -------------------------------------------------------------------------------- T[CT]TT[AC][TC]T[TC] -------------------------------------------------------------------------------- Time 11.15 secs. ******************************************************************************** ******************************************************************************** MOTIF CACCACCA MEME-3 width = 8 sites = 19 llr = 177 E-value = 2.0e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CACCACCA MEME-3 Description -------------------------------------------------------------------------------- Simplified A :9::9::a pos.-specific C 8:9a:9a: probability G 2:1:1::: matrix T :1:::1:: bits 2.1 * 1.9 * ** 1.7 * *** 1.5 ******* Relative 1.3 ******** Entropy 1.1 ******** (13.4 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACCACCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCACCA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:9563855-9563935 66 2.01e-05 CCATTAACCC CACCACCA TGCCCAG chrI:11203502-11203582 28 2.01e-05 GGGGAACTAC CACCACCA CCCGCCCCGT chrIV:5085820-5085900 42 2.01e-05 TCCAATGTAT CACCACCA CATAATGATG chrIII:3620848-3620928 26 2.01e-05 acacaaccac caccacca tcaccGCTAA chrI:7217376-7217456 23 2.01e-05 CCGCTGCCGC CACCACCA TCATCGCAAA chrIII:4281023-4281103 51 2.01e-05 CGTTGCAcac caccacca cccctcctca chrIV:5081157-5081237 5 2.01e-05 ccac caccacca ctacaaacac chrI:4371001-4371081 57 2.01e-05 TCGGGTGGTA CACCACCA CCCATTGGCG chrX:5214902-5214982 30 2.01e-05 GGGATGCCTC CACCACCA CTGGGCATGC chrIV:17105740-17105820 20 2.01e-05 CCTCCAGCTC CACCACCA GGAGCTTCTC chrX:13590841-13590921 17 3.94e-05 GGACCTCTAG GACCACCA GGACCGCCCG chrIV:1769193-1769273 35 3.94e-05 GGACCAGCTG GACCACCA GGGCCACCAG chrIII:5108089-5108169 26 3.94e-05 GGACCAATTG GACCACCA GGAGCCGCTG chrI:14103827-14103907 60 5.85e-05 AACTTTGCCC CTCCACCA CAATCGGGAC chrIV:7485816-7485896 29 5.85e-05 TATTCCTTGT CTCCACCA GTCTTCTTTG chrV:7978077-7978157 69 8.02e-05 AAACAAGGAG CACCGCCA AAGA chrIII:1929328-1929408 46 8.02e-05 GCCAGTGAAA CACCGCCA AATGGGCTGC chrV:298492-298572 9 9.72e-05 GTTCACAA CACCATCA CCGTCACCGT chrIII:8964760-8964840 67 1.17e-04 GGATCTGAAG CAGCACCA GAAGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCACCA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:9563855-9563935 2e-05 65_[+3]_7 chrI:11203502-11203582 2e-05 27_[+3]_45 chrIV:5085820-5085900 2e-05 41_[+3]_31 chrIII:3620848-3620928 2e-05 25_[+3]_47 chrI:7217376-7217456 2e-05 22_[+3]_50 chrIII:4281023-4281103 2e-05 50_[+3]_22 chrIV:5081157-5081237 2e-05 4_[+3]_68 chrI:4371001-4371081 2e-05 56_[+3]_16 chrX:5214902-5214982 2e-05 29_[+3]_43 chrIV:17105740-17105820 2e-05 19_[+3]_53 chrX:13590841-13590921 3.9e-05 16_[+3]_56 chrIV:1769193-1769273 3.9e-05 34_[+3]_38 chrIII:5108089-5108169 3.9e-05 25_[+3]_47 chrI:14103827-14103907 5.9e-05 59_[+3]_13 chrIV:7485816-7485896 5.9e-05 28_[+3]_44 chrV:7978077-7978157 8e-05 68_[+3]_4 chrIII:1929328-1929408 8e-05 45_[+3]_27 chrV:298492-298572 9.7e-05 8_[+3]_64 chrIII:8964760-8964840 0.00012 66_[+3]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCACCA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CACCACCA width=8 seqs=19 chrIV:9563855-9563935 ( 66) CACCACCA 1 chrI:11203502-11203582 ( 28) CACCACCA 1 chrIV:5085820-5085900 ( 42) CACCACCA 1 chrIII:3620848-3620928 ( 26) CACCACCA 1 chrI:7217376-7217456 ( 23) CACCACCA 1 chrIII:4281023-4281103 ( 51) CACCACCA 1 chrIV:5081157-5081237 ( 5) CACCACCA 1 chrI:4371001-4371081 ( 57) CACCACCA 1 chrX:5214902-5214982 ( 30) CACCACCA 1 chrIV:17105740-17105820 ( 20) CACCACCA 1 chrX:13590841-13590921 ( 17) GACCACCA 1 chrIV:1769193-1769273 ( 35) GACCACCA 1 chrIII:5108089-5108169 ( 26) GACCACCA 1 chrI:14103827-14103907 ( 60) CTCCACCA 1 chrIV:7485816-7485896 ( 29) CTCCACCA 1 chrV:7978077-7978157 ( 69) CACCGCCA 1 chrIII:1929328-1929408 ( 46) CACCGCCA 1 chrV:298492-298572 ( 9) CACCATCA 1 chrIII:8964760-8964840 ( 67) CAGCACCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCACCA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8043 E= 2.0e+001 -1089 164 -72 -1089 189 -1089 -1089 -112 -1089 181 -230 -1089 -1089 189 -1089 -1089 189 -1089 -130 -1089 -1089 181 -1089 -212 -1089 189 -1089 -1089 205 -1089 -1089 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCACCA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 2.0e+001 0.000000 0.842105 0.157895 0.000000 0.894737 0.000000 0.000000 0.105263 0.000000 0.947368 0.052632 0.000000 0.000000 1.000000 0.000000 0.000000 0.894737 0.000000 0.105263 0.000000 0.000000 0.947368 0.000000 0.052632 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CACCACCA MEME-3 regular expression -------------------------------------------------------------------------------- CACCACCA -------------------------------------------------------------------------------- Time 14.75 secs. ******************************************************************************** ******************************************************************************** MOTIF GRTGRTGR MEME-4 width = 8 sites = 24 llr = 204 E-value = 9.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GRTGRTGR MEME-4 Description -------------------------------------------------------------------------------- Simplified A :5::53:6 pos.-specific C :::::::: probability G a5:a5:a4 matrix T ::a::7:: bits 2.1 * 1.9 * ** * 1.7 * ** * 1.5 * ** * Relative 1.3 * ** ** Entropy 1.1 ******** (12.3 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GATGATGA consensus G GA G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGRTGR MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:5085820-5085900 56 1.29e-05 ACCACATAAT GATGATGA GAGCAATGCA chrI:7969295-7969375 55 1.29e-05 GAGAGTGTTG GATGATGA CGGGACACTA chrI:9542435-9542515 28 1.29e-05 GATGTCAAAC GATGATGA GAAAGCGATG chrIII:9772307-9772387 18 1.29e-05 GAGCTGATAT GATGATGA GACGAAGAAT chrII:8900429-8900509 1 1.29e-05 . GATGATGA TATTGCCTTC chrIV:9264024-9264104 58 4.07e-05 AGCGGGGACA GATGGTGA CGTTGGATTA chrII:15058403-15058483 25 4.07e-05 AGCTCGAGGA GGTGATGA AGTTGGCGCG chrIV:11406466-11406546 36 4.07e-05 CCTTTGGCAT GATGGTGA CTCGCTTAGC chrI:14960452-14960532 32 6.97e-05 TCTGATGGCC GGTGGTGA CCTCTTGGAG chrX:10336705-10336785 56 6.97e-05 TACAGGAGGA GGTGGTGA CGGCGGATAT chrII:11889626-11889706 5 9.97e-05 TACC GGTGATGG TCACCGTGTG chrIII:13720482-13720562 4 9.97e-05 CGG GGTGATGG GCGTCCTTAT chrV:14319222-14319302 73 9.97e-05 agcggcgtca ggtgatgg chrIV:14823276-14823356 31 1.13e-04 CGAGAAGGTT GATGAAGA AGTTTCCTCC chrI:10826646-10826726 33 1.13e-04 ggaatatgaa gatgaaga gagtgagtat chrV:18712192-18712272 69 1.29e-04 GAGTCCGCGG GGTGGTGG GAAA chrI:8002918-8002998 28 1.29e-04 ATCTACATAC GGTGGTGG CCGAAGAGTT chrI:11221288-11221368 32 1.29e-04 TAGGCTTTTC GGTGGTGG TGCCGCTGGA chrI:5310549-5310629 50 1.29e-04 ATGCTGTCCC GGTGGTGG TGCAAAACTG chrX:13469919-13469999 50 1.59e-04 ACCTGGACCA GATGGAGA GCCAGGAGTC chrII:13490162-13490242 15 1.59e-04 CGGGTGTGTA GATGGAGA CGATTTACGA chrV:5846698-5846778 66 1.89e-04 GGGGTGGTTC GATGAAGG CGTAGAG chrX:1082023-1082103 64 1.89e-04 ACCGCAGATA GATGAAGG GCGGGAGAG chrX:5764893-5764973 22 1.89e-04 TTGAGTGGAG GGTGGAGA GTATGCAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGRTGR MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:5085820-5085900 1.3e-05 55_[+4]_17 chrI:7969295-7969375 1.3e-05 54_[+4]_18 chrI:9542435-9542515 1.3e-05 27_[+4]_45 chrIII:9772307-9772387 1.3e-05 17_[+4]_55 chrII:8900429-8900509 1.3e-05 [+4]_72 chrIV:9264024-9264104 4.1e-05 57_[+4]_15 chrII:15058403-15058483 4.1e-05 24_[+4]_48 chrIV:11406466-11406546 4.1e-05 35_[+4]_37 chrI:14960452-14960532 7e-05 31_[+4]_41 chrX:10336705-10336785 7e-05 55_[+4]_17 chrII:11889626-11889706 0.0001 4_[+4]_68 chrIII:13720482-13720562 0.0001 3_[+4]_69 chrV:14319222-14319302 0.0001 72_[+4] chrIV:14823276-14823356 0.00011 30_[+4]_42 chrI:10826646-10826726 0.00011 32_[+4]_40 chrV:18712192-18712272 0.00013 68_[+4]_4 chrI:8002918-8002998 0.00013 27_[+4]_45 chrI:11221288-11221368 0.00013 31_[+4]_41 chrI:5310549-5310629 0.00013 49_[+4]_23 chrX:13469919-13469999 0.00016 49_[+4]_23 chrII:13490162-13490242 0.00016 14_[+4]_58 chrV:5846698-5846778 0.00019 65_[+4]_7 chrX:1082023-1082103 0.00019 63_[+4]_9 chrX:5764893-5764973 0.00019 21_[+4]_51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGRTGR MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GRTGRTGR width=8 seqs=24 chrIV:5085820-5085900 ( 56) GATGATGA 1 chrI:7969295-7969375 ( 55) GATGATGA 1 chrI:9542435-9542515 ( 28) GATGATGA 1 chrIII:9772307-9772387 ( 18) GATGATGA 1 chrII:8900429-8900509 ( 1) GATGATGA 1 chrIV:9264024-9264104 ( 58) GATGGTGA 1 chrII:15058403-15058483 ( 25) GGTGATGA 1 chrIV:11406466-11406546 ( 36) GATGGTGA 1 chrI:14960452-14960532 ( 32) GGTGGTGA 1 chrX:10336705-10336785 ( 56) GGTGGTGA 1 chrII:11889626-11889706 ( 5) GGTGATGG 1 chrIII:13720482-13720562 ( 4) GGTGATGG 1 chrV:14319222-14319302 ( 73) GGTGATGG 1 chrIV:14823276-14823356 ( 31) GATGAAGA 1 chrI:10826646-10826726 ( 33) GATGAAGA 1 chrV:18712192-18712272 ( 69) GGTGGTGG 1 chrI:8002918-8002998 ( 28) GGTGGTGG 1 chrI:11221288-11221368 ( 32) GGTGGTGG 1 chrI:5310549-5310629 ( 50) GGTGGTGG 1 chrX:13469919-13469999 ( 50) GATGGAGA 1 chrII:13490162-13490242 ( 15) GATGGAGA 1 chrV:5846698-5846778 ( 66) GATGAAGG 1 chrX:1082023-1082103 ( 64) GATGAAGG 1 chrX:5764893-5764973 ( 22) GGTGGAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGRTGR MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.6693 E= 9.1e+004 -1123 -1123 194 -1123 117 -1123 82 -1123 -1123 -1123 -1123 213 -1123 -1123 194 -1123 117 -1123 82 -1123 27 -1123 -1123 163 -1123 -1123 194 -1123 137 -1123 53 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGRTGR MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 9.1e+004 0.000000 0.000000 1.000000 0.000000 0.541667 0.000000 0.458333 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.541667 0.000000 0.458333 0.000000 0.291667 0.000000 0.000000 0.708333 0.000000 0.000000 1.000000 0.000000 0.625000 0.000000 0.375000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GRTGRTGR MEME-4 regular expression -------------------------------------------------------------------------------- G[AG]TG[AG][TA]G[AG] -------------------------------------------------------------------------------- Time 18.32 secs. ******************************************************************************** ******************************************************************************** MOTIF CTTTCTCT MEME-5 width = 8 sites = 4 llr = 45 E-value = 1.8e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTTTCTCT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:::a:a: probability G :::::::: matrix T :aaa:a:a bits 2.1 *** * * 1.9 ******** 1.7 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.3 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTTTCTCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTCTCT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:933476-933556 34 1.24e-05 CACCAATTAT CTTTCTCT CTGtggcttc chrX:14581631-14581711 37 1.24e-05 CTTTACGCTC CTTTCTCT CCTCCCCCTT chrIII:9247384-9247464 16 1.24e-05 TCCAGGTGTT CTTTCTCT AGTCATTTCC chrIV:8333675-8333755 69 1.24e-05 CAGTTACCGT CTTTCTCT TGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTCTCT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:933476-933556 1.2e-05 33_[+5]_39 chrX:14581631-14581711 1.2e-05 36_[+5]_36 chrIII:9247384-9247464 1.2e-05 15_[+5]_57 chrIV:8333675-8333755 1.2e-05 68_[+5]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTCTCT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTTTCTCT width=8 seqs=4 chrI:933476-933556 ( 34) CTTTCTCT 1 chrX:14581631-14581711 ( 37) CTTTCTCT 1 chrIII:9247384-9247464 ( 16) CTTTCTCT 1 chrIV:8333675-8333755 ( 69) CTTTCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTCTCT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.307 E= 1.8e+005 -865 188 -865 -865 -865 -865 -865 212 -865 -865 -865 212 -865 -865 -865 212 -865 188 -865 -865 -865 -865 -865 212 -865 188 -865 -865 -865 -865 -865 212 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTCTCT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.8e+005 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTCTCT MEME-5 regular expression -------------------------------------------------------------------------------- CTTTCTCT -------------------------------------------------------------------------------- Time 21.83 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:8898623-8898703 1.22e-01 80 chrIV:11406466-11406546 1.79e-01 35_[+4(4.07e-05)]_37 chrI:3996278-3996358 1.29e-02 7_[+1(1.43e-05)]_65 chrX:12848999-12849079 1.16e-01 7_[+2(6.66e-05)]_65 chrV:3443155-3443235 6.64e-01 80 chrX:6089603-6089683 1.31e-01 80 chrI:2302535-2302615 1.15e-01 80 chrII:11622779-11622859 2.09e-02 41_[+2(3.56e-05)]_31 chrIV:8334640-8334720 2.10e-01 80 chrIII:5108089-5108169 9.66e-04 25_[+3(3.94e-05)]_10_[+1(1.43e-05)]_\ 29 chrII:11044461-11044541 9.43e-01 80 chrI:10826646-10826726 3.34e-02 80 chrV:16042013-16042093 8.34e-01 80 chrIV:7488599-7488679 1.93e-01 80 chrV:16042772-16042852 1.94e-02 80 chrIV:9109621-9109701 1.17e-01 64_[+2(6.66e-05)]_8 chrIV:11407408-11407488 1.57e-01 80 chrIV:17105740-17105820 3.98e-02 19_[+3(2.01e-05)]_37_[+3(2.01e-05)]_\ 8 chrII:8900429-8900509 1.05e-02 [+4(1.29e-05)]_72 chrII:13817642-13817722 5.74e-03 28_[+2(7.96e-06)]_44 chrIV:14986038-14986118 4.62e-01 80 chrIV:3686444-3686524 9.54e-01 80 chrV:8535549-8535629 3.85e-02 54_[+2(7.96e-06)]_18 chrV:16040321-16040401 5.10e-01 80 chrIV:7486748-7486828 8.42e-01 80 chrI:5310549-5310629 3.22e-01 80 chrX:13592151-13592231 4.87e-01 80 chrII:15058403-15058483 1.06e-01 24_[+4(4.07e-05)]_48 chrX:16614211-16614291 9.79e-01 80 chrIV:8333675-8333755 6.65e-03 68_[+5(1.24e-05)]_4 chrIV:7487656-7487736 9.44e-02 80 chrIV:14823276-14823356 4.23e-02 80 chrV:16041063-16041143 5.35e-02 80 chrV:14319222-14319302 9.33e-02 72_[+4(9.97e-05)] chrI:11764922-11765002 7.17e-01 80 chrV:18720369-18720449 6.67e-01 80 chrX:10336705-10336785 4.68e-03 55_[+4(6.97e-05)]_17 chrX:5214902-5214982 1.83e-01 29_[+3(2.01e-05)]_43 chrIII:13769395-13769475 2.89e-01 80 chrIV:9853107-9853187 2.75e-01 80 chrX:7562775-7562855 1.65e-02 1_[+2(1.73e-05)]_71 chrX:4741164-4741244 2.87e-01 80 chrII:12789597-12789677 5.34e-02 80 chrIV:1769193-1769273 5.34e-02 34_[+3(3.94e-05)]_38 chrI:1728562-1728642 5.60e-01 80 chrII:3968898-3968978 2.30e-01 80 chrX:4813175-4813255 2.25e-02 [+1(4.29e-05)]_72 chrIII:9772307-9772387 3.67e-02 17_[+4(1.29e-05)]_55 chrIII:11759021-11759101 4.86e-01 80 chrII:13278654-13278734 9.95e-01 80 chrII:7154806-7154886 6.57e-01 80 chrI:11221288-11221368 1.84e-01 80 chrI:1738154-1738234 5.41e-01 80 chrIV:8851053-8851133 9.78e-01 80 chrI:6156815-6156895 2.24e-01 80 chrI:5084797-5084877 2.74e-01 80 chrI:8002918-8002998 2.54e-02 80 chrX:2698880-2698960 7.96e-01 80 chrX:14027113-14027193 5.73e-01 80 chrV:16040088-16040168 1.54e-01 80 chrI:7085876-7085956 1.96e-01 80 chrV:18671970-18672050 8.71e-01 80 chrI:378814-378894 3.55e-02 80 chrI:6153771-6153851 1.70e-01 3_[+3(8.02e-05)]_69 chrIII:5675683-5675763 2.30e-02 6_[+1(8.81e-05)]_66 chrIII:3443409-3443489 9.46e-01 80 chrX:13673738-13673818 1.41e-01 80 chrII:7811008-7811088 1.69e-01 80 chrIV:4465767-4465847 7.62e-01 80 chrIV:1019980-1020060 3.05e-01 80 chrIII:4098957-4099037 6.75e-01 80 chrIV:9269045-9269125 5.06e-01 80 chrI:9447387-9447467 5.61e-02 25_[+1(2.97e-05)]_47 chrII:15007306-15007386 3.31e-01 80 chrV:298492-298572 2.99e-01 8_[+3(9.72e-05)]_64 chrX:12407486-12407566 4.96e-02 80 chrIII:3623865-3623945 4.56e-01 80 chrII:14096947-14097027 7.63e-01 80 chrV:5844045-5844125 2.53e-01 80 chrII:13637550-13637630 7.10e-01 80 chrIII:4010306-4010386 7.95e-01 80 chrX:5205707-5205787 6.98e-01 80 chrI:8976453-8976533 9.03e-01 80 chrII:14352297-14352377 8.78e-01 80 chrI:13286281-13286361 1.35e-01 80 chrIV:3233438-3233518 9.28e-01 80 chrII:11566140-11566220 5.19e-01 80 chrI:11092051-11092131 3.19e-01 80 chrI:5308513-5308593 1.08e-02 72_[+1(1.43e-05)] chrIII:10471357-10471437 6.10e-01 80 chrIV:11524683-11524763 9.20e-02 80 chrI:8046749-8046829 1.15e-02 80 chrIII:10809031-10809111 9.95e-01 80 chrX:4744198-4744278 7.44e-01 80 chrI:4371001-4371081 2.18e-02 56_[+3(2.01e-05)]_16 chrII:6022836-6022916 2.38e-02 80 chrIII:13720482-13720562 9.27e-03 3_[+4(9.97e-05)]_69 chrV:11913544-11913624 6.87e-01 80 chrIII:13651524-13651604 4.45e-01 80 chrIV:11717268-11717348 5.30e-01 80 chrII:551619-551699 5.98e-01 80 chrIII:9247384-9247464 4.00e-03 15_[+5(1.24e-05)]_49_[+2(6.66e-05)] chrI:4976314-4976394 7.75e-01 80 chrX:13948315-13948395 6.00e-01 80 chrI:2740245-2740325 2.61e-01 80 chrII:5651692-5651772 2.13e-01 80 chrIII:2314901-2314981 1.75e-01 80 chrX:10395928-10396008 5.74e-01 80 chrI:6173056-6173136 2.49e-03 80 chrIII:5720786-5720866 2.70e-02 80 chrIII:12470778-12470858 4.46e-01 80 chrV:17812273-17812353 9.75e-01 80 chrX:7719029-7719109 3.38e-01 80 chrV:13647318-13647398 1.00e+00 80 chrX:3459802-3459882 7.78e-01 80 chrII:13841215-13841295 2.80e-01 80 chrIII:11466798-11466878 5.71e-01 80 chrV:18712192-18712272 3.62e-01 80 chrIII:11427740-11427820 6.51e-01 80 chrV:20674240-20674320 3.06e-01 80 chrIV:11565201-11565281 9.50e-01 80 chrIV:5081157-5081237 2.54e-03 1_[+3(2.01e-05)]_71 chrX:3259096-3259176 9.86e-01 80 chrIII:12883213-12883293 3.90e-01 80 chrX:14581631-14581711 2.71e-02 36_[+5(1.24e-05)]_36 chrX:12692192-12692272 1.11e-01 80 chrI:7715752-7715832 5.60e-02 80 chrI:4745370-4745450 5.05e-01 80 chrI:11077710-11077790 4.76e-01 80 chrX:12693395-12693475 4.02e-01 80 chrI:2844385-2844465 1.37e-01 80 chrIII:10741367-10741447 2.05e-01 80 chrX:1120341-1120421 4.74e-02 50_[+1(1.43e-05)]_22 chrX:4749329-4749409 2.73e-01 80 chrII:13490162-13490242 2.70e-01 80 chrI:7711774-7711854 3.93e-02 4_[+1(1.43e-05)]_68 chrIII:4281023-4281103 1.63e-01 47_[+3(2.01e-05)]_25 chrIV:7485816-7485896 1.42e-05 15_[+2(6.66e-05)]_5_[+3(5.85e-05)]_\ 1_[+2(6.66e-05)]_2_[+1(4.29e-05)]_25 chrX:10927337-10927417 3.41e-01 80 chrIII:13092356-13092436 8.49e-01 80 chrV:11845034-11845114 2.25e-01 80 chrIII:12686081-12686161 6.57e-01 80 chrX:17456863-17456943 3.98e-01 80 chrX:13469919-13469999 8.04e-03 80 chrX:16602520-16602600 7.08e-01 80 chrIII:8964760-8964840 1.80e-01 80 chrI:9167299-9167379 6.48e-04 4_[+2(6.66e-05)]_68 chrI:232020-232100 9.97e-01 80 chrX:4971549-4971629 5.66e-01 80 chrI:10175227-10175307 2.36e-01 80 chrIII:13644416-13644496 2.54e-02 80 chrI:11609185-11609265 9.97e-01 80 chrI:6151582-6151662 3.13e-03 80 chrI:7217376-7217456 1.47e-01 22_[+3(2.01e-05)]_50 chrII:6522702-6522782 3.63e-01 80 chrI:9542435-9542515 7.47e-03 27_[+4(1.29e-05)]_45 chrIII:12150031-12150111 7.01e-01 80 chrIV:10817223-10817303 3.19e-01 80 chrX:4620232-4620312 1.60e-01 80 chrV:14325039-14325119 8.14e-01 80 chrIII:1929328-1929408 4.07e-01 45_[+3(8.02e-05)]_27 chrIV:4548246-4548326 3.62e-01 80 chrIII:4948805-4948885 4.31e-01 80 chrV:154011-154091 6.51e-01 80 chrV:17427965-17428045 1.67e-01 80 chrIV:17279704-17279784 5.83e-03 80 chrI:737126-737206 9.60e-01 80 chrIV:173195-173275 3.04e-01 80 chrX:5764893-5764973 1.26e-01 80 chrI:2888791-2888871 6.71e-01 80 chrIV:7489433-7489513 2.19e-02 55_[+2(3.56e-05)]_17 chrIII:2305129-2305209 1.02e-01 80 chrX:8750995-8751075 6.97e-01 80 chrIII:354554-354634 9.95e-01 80 chrV:13396565-13396645 1.33e-01 80 chrI:330431-330511 3.39e-02 66_[+1(1.43e-05)]_6 chrI:14103827-14103907 2.44e-01 59_[+3(5.85e-05)]_13 chrIV:3233639-3233719 3.58e-02 65_[+1(2.97e-05)]_7 chrV:11770105-11770185 4.23e-01 80 chrV:9343976-9344056 4.58e-01 80 chrII:8412266-8412346 3.36e-01 80 chrX:14228975-14229055 3.04e-03 80 chrX:11339579-11339659 7.89e-01 80 chrX:1082023-1082103 1.22e-01 80 chrX:5056378-5056458 1.83e-01 80 chrI:4175981-4176061 3.57e-01 80 chrII:13325321-13325401 6.09e-01 80 chrV:6344847-6344927 6.37e-01 80 chrIV:4255430-4255510 9.09e-01 80 chrV:12024300-12024380 7.93e-01 80 chrV:361499-361579 3.26e-02 63_[+1(1.43e-05)]_9 chrX:15108116-15108196 4.48e-02 54_[+2(7.77e-05)]_18 chrIV:9264024-9264104 5.32e-02 57_[+4(4.07e-05)]_15 chrIV:7486032-7486112 1.89e-01 80 chrX:15613936-15614016 3.69e-01 80 chrIII:3499971-3500051 5.92e-01 80 chrII:714516-714596 6.17e-01 80 chrIII:1218399-1218479 5.32e-01 80 chrX:17315058-17315138 3.53e-02 22_[+2(9.57e-05)]_50 chrX:14610505-14610585 8.49e-01 80 chrI:7969295-7969375 1.85e-02 54_[+4(1.29e-05)]_18 chrX:2375171-2375251 4.74e-01 80 chrI:542335-542415 5.36e-05 57_[+2(7.96e-06)]_15 chrX:601627-601707 1.82e-01 80 chrI:2753196-2753276 2.07e-01 80 chrI:933476-933556 1.84e-03 33_[+5(1.24e-05)]_39 chrIV:14095783-14095863 7.27e-01 80 chrIV:2939481-2939561 5.36e-01 80 chrIII:3620848-3620928 2.18e-02 22_[+3(2.01e-05)]_50 chrX:13226848-13226928 4.50e-01 80 chrII:8128876-8128956 3.81e-02 80 chrI:4200028-4200108 8.52e-04 17_[+1(5.84e-05)]_12_[+2(6.66e-05)]_\ 35 chrI:14960452-14960532 9.56e-02 31_[+4(6.97e-05)]_41 chrX:7655389-7655469 4.19e-01 80 chrV:7978077-7978157 1.48e-02 68_[+3(8.02e-05)]_4 chrIII:3915050-3915130 2.65e-01 80 chrIV:5085820-5085900 8.58e-04 41_[+3(2.01e-05)]_6_[+4(1.29e-05)]_\ 17 chrV:5846698-5846778 3.19e-01 80 chrI:11095898-11095978 9.01e-02 80 chrII:11889626-11889706 1.41e-02 4_[+4(9.97e-05)]_68 chrX:5518594-5518674 6.22e-02 80 chrV:4667223-4667303 9.24e-01 80 chrI:7710048-7710128 3.58e-02 2_[+1(4.29e-05)]_70 chrI:11203502-11203582 4.47e-02 27_[+3(2.01e-05)]_45 chrI:7951786-7951866 5.75e-02 80 chrII:3054848-3054928 5.93e-02 80 chrIV:9563855-9563935 1.64e-01 65_[+3(2.01e-05)]_7 chrI:2831559-2831639 1.80e-02 80 chrII:5068041-5068121 9.46e-02 60_[+1(5.84e-05)]_12 chrX:7651413-7651493 2.58e-01 3_[+1(4.29e-05)]_69 chrI:14076359-14076439 7.50e-01 80 chrIV:5941403-5941483 4.90e-01 80 chrX:13590841-13590921 2.77e-01 16_[+3(3.94e-05)]_56 chrII:12728022-12728102 3.07e-01 80 chrII:3956266-3956346 6.04e-04 42_[+2(9.57e-05)]_30 chrX:10373718-10373798 1.34e-01 80 chrI:384831-384911 9.98e-01 80 chrIV:2998786-2998866 1.51e-01 80 chrI:9475019-9475099 4.25e-02 10_[+1(4.29e-05)]_48_[+1(1.43e-05)]_\ 6 chrIII:931569-931649 6.10e-01 80 chrI:3106613-3106693 1.17e-01 80 chrII:14249624-14249704 4.80e-03 80 chrI:530548-530628 3.96e-01 80 chrV:10717033-10717113 7.80e-01 80 chrII:10547454-10547534 5.78e-01 80 chrV:155314-155394 2.25e-01 80 chrII:15226452-15226532 3.57e-01 80 chrI:12229371-12229451 3.24e-01 80 chrV:16042985-16043065 4.57e-01 80 chrII:7676580-7676660 1.34e-01 62_[+2(6.66e-05)]_10 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************