******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/ahr-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:2487858-2487938 1.0000 80 chrIV:1687294-1687374 1.0000 80 chrIII:10856980-10857060 1.0000 80 chrIII:3499982-3500062 1.0000 80 chrI:13421174-13421254 1.0000 80 chrV:16553068-16553148 1.0000 80 chrV:20832780-20832860 1.0000 80 chrIII:3476420-3476500 1.0000 80 chrII:2570630-2570710 1.0000 80 chrI:3176599-3176679 1.0000 80 chrIV:17108345-17108425 1.0000 80 chrII:8137426-8137506 1.0000 80 chrI:2996043-2996123 1.0000 80 chrIII:11091858-11091938 1.0000 80 chrV:11933460-11933540 1.0000 80 chrIII:11093663-11093743 1.0000 80 chrIII:10811208-10811288 1.0000 80 chrII:5836494-5836574 1.0000 80 chrI:2710662-2710742 1.0000 80 chrI:7251656-7251736 1.0000 80 chrI:13422533-13422613 1.0000 80 chrII:12042347-12042427 1.0000 80 chrI:1675979-1676059 1.0000 80 chrI:4967569-4967649 1.0000 80 chrIII:11832806-11832886 1.0000 80 chrI:10026060-10026140 1.0000 80 chrIV:4042395-4042475 1.0000 80 chrIII:640548-640628 1.0000 80 chrII:7072740-7072820 1.0000 80 chrII:14528451-14528531 1.0000 80 chrI:8125528-8125608 1.0000 80 chrII:4791440-4791520 1.0000 80 chrI:11609223-11609303 1.0000 80 chrIII:10123780-10123860 1.0000 80 chrV:7231002-7231082 1.0000 80 chrIII:8250366-8250446 1.0000 80 chrI:10469016-10469096 1.0000 80 chrI:1415968-1416048 1.0000 80 chrIII:8144749-8144829 1.0000 80 chrIII:13780915-13780995 1.0000 80 chrII:6734860-6734940 1.0000 80 chrI:853269-853349 1.0000 80 chrI:6252909-6252989 1.0000 80 chrI:1213488-1213568 1.0000 80 chrIII:13474610-13474690 1.0000 80 chrIII:1233570-1233650 1.0000 80 chrII:6741564-6741644 1.0000 80 chrIII:6551636-6551716 1.0000 80 chrI:13418745-13418825 1.0000 80 chrIII:3664357-3664437 1.0000 80 chrIII:11848509-11848589 1.0000 80 chrIV:7654519-7654599 1.0000 80 chrI:933436-933516 1.0000 80 chrIII:3175137-3175217 1.0000 80 chrX:10821313-10821393 1.0000 80 chrV:4181852-4181932 1.0000 80 chrV:10178288-10178368 1.0000 80 chrI:12525010-12525090 1.0000 80 chrV:10235705-10235785 1.0000 80 chrX:10859663-10859743 1.0000 80 chrII:3482335-3482415 1.0000 80 chrIII:5069000-5069080 1.0000 80 chrV:18712030-18712110 1.0000 80 chrIV:2033201-2033281 1.0000 80 chrIV:17099263-17099343 1.0000 80 chrI:1823222-1823302 1.0000 80 chrX:10568494-10568574 1.0000 80 chrII:7708750-7708830 1.0000 80 chrIV:11635762-11635842 1.0000 80 chrIV:14787978-14788058 1.0000 80 chrIV:16863643-16863723 1.0000 80 chrII:14405737-14405817 1.0000 80 chrI:6283468-6283548 1.0000 80 chrV:11239317-11239397 1.0000 80 chrV:15136917-15136997 1.0000 80 chrII:1134687-1134767 1.0000 80 chrI:1280257-1280337 1.0000 80 chrIII:7642170-7642250 1.0000 80 chrII:14144082-14144162 1.0000 80 chrIV:796676-796756 1.0000 80 chrI:3350199-3350279 1.0000 80 chrV:13715489-13715569 1.0000 80 chrIV:10821562-10821642 1.0000 80 chrV:1004004-1004084 1.0000 80 chrI:6446630-6446710 1.0000 80 chrII:5594467-5594547 1.0000 80 chrI:1175825-1175905 1.0000 80 chrIII:11317253-11317333 1.0000 80 chrIV:7486395-7486475 1.0000 80 chrI:10642435-10642515 1.0000 80 chrI:3547001-3547081 1.0000 80 chrIII:8768063-8768143 1.0000 80 chrX:10591081-10591161 1.0000 80 chrI:7772624-7772704 1.0000 80 chrI:5164971-5165051 1.0000 80 chrII:8325280-8325360 1.0000 80 chrV:9583061-9583141 1.0000 80 chrIII:4905604-4905684 1.0000 80 chrIV:16995560-16995640 1.0000 80 chrI:4958850-4958930 1.0000 80 chrX:5118096-5118176 1.0000 80 chrI:2996335-2996415 1.0000 80 chrIII:2697359-2697439 1.0000 80 chrII:14063196-14063276 1.0000 80 chrV:13962195-13962275 1.0000 80 chrX:16930853-16930933 1.0000 80 chrII:4238051-4238131 1.0000 80 chrIV:16946911-16946991 1.0000 80 chrI:6136555-6136635 1.0000 80 chrII:9968527-9968607 1.0000 80 chrX:12692080-12692160 1.0000 80 chrII:3502819-3502899 1.0000 80 chrV:13396497-13396577 1.0000 80 chrIII:10432287-10432367 1.0000 80 chrII:15008714-15008794 1.0000 80 chrIII:11142237-11142317 1.0000 80 chrI:27107-27187 1.0000 80 chrX:12890261-12890341 1.0000 80 chrIV:410720-410800 1.0000 80 chrII:9591264-9591344 1.0000 80 chrI:11323334-11323414 1.0000 80 chrV:2673983-2674063 1.0000 80 chrI:9249384-9249464 1.0000 80 chrI:7518918-7518998 1.0000 80 chrI:14708034-14708114 1.0000 80 chrIII:3916790-3916870 1.0000 80 chrIII:1540295-1540375 1.0000 80 chrIII:11119542-11119622 1.0000 80 chrV:18720334-18720414 1.0000 80 chrII:13117282-13117362 1.0000 80 chrV:1821395-1821475 1.0000 80 chrV:11039762-11039842 1.0000 80 chrI:14721594-14721674 1.0000 80 chrIII:7199009-7199089 1.0000 80 chrX:14115642-14115722 1.0000 80 chrX:14804877-14804957 1.0000 80 chrI:5176406-5176486 1.0000 80 chrV:15002517-15002597 1.0000 80 chrV:10356100-10356180 1.0000 80 chrX:17315095-17315175 1.0000 80 chrIII:4930431-4930511 1.0000 80 chrI:13470333-13470413 1.0000 80 chrIV:6646142-6646222 1.0000 80 chrX:4789130-4789210 1.0000 80 chrX:3969492-3969572 1.0000 80 chrI:9855464-9855544 1.0000 80 chrV:4731536-4731616 1.0000 80 chrII:8062431-8062511 1.0000 80 chrX:9296754-9296834 1.0000 80 chrV:14347362-14347442 1.0000 80 chrV:11029487-11029567 1.0000 80 chrI:9064785-9064865 1.0000 80 chrII:6248700-6248780 1.0000 80 chrIII:1824674-1824754 1.0000 80 chrIV:16415311-16415391 1.0000 80 chrIII:7030546-7030626 1.0000 80 chrIV:17087584-17087664 1.0000 80 chrIII:4568684-4568764 1.0000 80 chrV:1875685-1875765 1.0000 80 chrII:4603187-4603267 1.0000 80 chrIV:192221-192301 1.0000 80 chrI:8615182-8615262 1.0000 80 chrII:13199917-13199997 1.0000 80 chrV:2638680-2638760 1.0000 80 chrIV:1745733-1745813 1.0000 80 chrIII:4171135-4171215 1.0000 80 chrIII:535320-535400 1.0000 80 chrIV:11310732-11310812 1.0000 80 chrI:1958513-1958593 1.0000 80 chrIV:11026169-11026249 1.0000 80 chrIV:9477734-9477814 1.0000 80 chrIII:13268993-13269073 1.0000 80 chrII:6913443-6913523 1.0000 80 chrII:7001567-7001647 1.0000 80 chrIV:385286-385366 1.0000 80 chrII:6061654-6061734 1.0000 80 chrIII:8319315-8319395 1.0000 80 chrV:11124093-11124173 1.0000 80 chrV:1197429-1197509 1.0000 80 chrV:12870096-12870176 1.0000 80 chrI:6493900-6493980 1.0000 80 chrV:5917875-5917955 1.0000 80 chrX:8386200-8386280 1.0000 80 chrIII:8307488-8307568 1.0000 80 chrIV:9074373-9074453 1.0000 80 chrX:12367702-12367782 1.0000 80 chrII:8547099-8547179 1.0000 80 chrX:8156086-8156166 1.0000 80 chrIV:9316200-9316280 1.0000 80 chrX:8646496-8646576 1.0000 80 chrII:11980278-11980358 1.0000 80 chrIII:9104262-9104342 1.0000 80 chrIV:9191345-9191425 1.0000 80 chrI:461698-461778 1.0000 80 chrX:10435515-10435595 1.0000 80 chrII:10248526-10248606 1.0000 80 chrIV:12724784-12724864 1.0000 80 chrIV:8016002-8016082 1.0000 80 chrII:9940600-9940680 1.0000 80 chrV:11113325-11113405 1.0000 80 chrV:12780441-12780521 1.0000 80 chrIV:8973682-8973762 1.0000 80 chrIV:10483895-10483975 1.0000 80 chrX:9637875-9637955 1.0000 80 chrIII:1604728-1604808 1.0000 80 chrIII:10460725-10460805 1.0000 80 chrIII:9868278-9868358 1.0000 80 chrIII:8106640-8106720 1.0000 80 chrIII:12351455-12351535 1.0000 80 chrIII:5555082-5555162 1.0000 80 chrII:10033606-10033686 1.0000 80 chrIV:7947051-7947131 1.0000 80 chrI:2410138-2410218 1.0000 80 chrIII:4369488-4369568 1.0000 80 chrII:11746949-11747029 1.0000 80 chrIV:1388246-1388326 1.0000 80 chrI:9988921-9989001 1.0000 80 chrX:14853988-14854068 1.0000 80 chrII:9566197-9566277 1.0000 80 chrIII:4378754-4378834 1.0000 80 chrIII:7520788-7520868 1.0000 80 chrIII:8887347-8887427 1.0000 80 chrI:11374404-11374484 1.0000 80 chrII:14635280-14635360 1.0000 80 chrX:5708001-5708081 1.0000 80 chrX:4444282-4444362 1.0000 80 chrX:9999919-9999999 1.0000 80 chrII:3521514-3521594 1.0000 80 chrIV:143955-144035 1.0000 80 chrIII:5308395-5308475 1.0000 80 chrII:8107302-8107382 1.0000 80 chrX:12563795-12563875 1.0000 80 chrI:1836642-1836722 1.0000 80 chrX:10555613-10555693 1.0000 80 chrIII:5211502-5211582 1.0000 80 chrIV:6206550-6206630 1.0000 80 chrX:1319989-1320069 1.0000 80 chrII:10388219-10388299 1.0000 80 chrX:1858885-1858965 1.0000 80 chrX:16604649-16604729 1.0000 80 chrI:3873927-3874007 1.0000 80 chrI:14737436-14737516 1.0000 80 chrV:13468299-13468379 1.0000 80 chrI:2935723-2935803 1.0000 80 chrV:11610641-11610721 1.0000 80 chrV:15085543-15085623 1.0000 80 chrIII:5349420-5349500 1.0000 80 chrI:8223177-8223257 1.0000 80 chrIII:11371411-11371491 1.0000 80 chrIII:11946520-11946600 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_ahr-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/ahr-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.27 C 0.234 G 0.227 T 0.269 Background letter frequencies (from file dataset with add-one prior applied): A 0.27 C 0.234 G 0.227 T 0.269 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCGCGSCS MEME-1 width = 8 sites = 95 llr = 667 E-value = 6.1e-021 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCGSCS MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2:::::1: pos.-specific C 37:8:556 probability G 6:a:a524 matrix T :3:2::1: bits 2.1 * * 1.9 * * 1.7 * * 1.5 * * Relative 1.3 **** Entropy 1.1 ***** * (10.1 bits) 0.9 ***** * 0.6 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCGCGGCC consensus CT CGG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGSCS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:8973682-8973762 57 7.96e-06 ATCCTAGTCC GCGCGGCC GTGTAGTCCT chrIII:7199009-7199089 29 7.96e-06 ATTCAAATGT GCGCGGCC ACGGCCACTG chrIII:8144749-8144829 29 7.96e-06 AGTACACACA GCGCGGCC TGGTTTTCCA chrIII:13268993-13269073 14 1.62e-05 TGCGAAAACT GCGCGCCC GCATTGCATA chrI:11323334-11323414 47 1.62e-05 TGCAAATATC GCGCGCCC GCATTGCAAT chrIV:11310732-11310812 63 2.39e-05 GAGGAAAAGT GCGCGGCG GGCTTGCAGA chrIII:4568684-4568764 40 2.39e-05 TGAAAATGTC GCGCGGCG GAATTGCGAG chrI:3873927-3874007 36 3.19e-05 ttgcgaatag gcgcgccg cacattgcAA chrIII:1824674-1824754 48 3.19e-05 TTGCAAAATC GCGCGCCG CAGGCTGCAA chrIV:16946911-16946991 35 3.19e-05 CAAATAGCAC GCGCGCCG CTTGCAAAAC chrI:5164971-5165051 25 3.19e-05 CCGCAGTATT GCGCGCCG TGTTTGCACC chrIII:9868278-9868358 52 4.78e-05 AACCTCTAGT CCGCGGCC ACCGGAAAAG chrI:461698-461778 46 4.78e-05 CCTAACATCT CCGCGGCC GCCCAGTGGT chrV:2638680-2638760 27 4.78e-05 TTTGCGGTGG CCGCGGCC GTGAAAATGC chrI:9855464-9855544 15 4.78e-05 TTCTATTCGT GCGCGGGC GCCCGCTCCC chrIII:4930431-4930511 44 4.78e-05 GGTCAAATAG CCGCGGCC ACGGCCATGA chrII:3482335-3482415 42 4.78e-05 ATATCCGTGG CCGCGGCC TAAGAACCCC chrIV:4042395-4042475 53 4.78e-05 TTTCTCGTGG CCGCGGCC TAGAAATCCC chrIII:5555082-5555162 55 6.42e-05 TGCGCAAAAA GCGCGCGC ACATTGCGTT chrI:8615182-8615262 43 6.42e-05 CACGTTGCAA CCGCGCCC CATGGACAAA chrV:4731536-4731616 66 6.42e-05 GCAAAAACGC GCGCGCGC ATTGCAT chrI:14721594-14721674 27 6.42e-05 TTTGCAATGC GCGCGCGC GGTTTTCGCA chrIII:3916790-3916870 42 6.42e-05 TGCAAACACT GCGCGCGC AGCTTGCAAG chrII:7708750-7708830 4 6.42e-05 AAT GCGCGCGC ACGGTTTTTG chrIII:11946520-11946600 7 8.88e-05 TACACT GCGCGGGG GACTAGAAAC chrV:11610641-11610721 20 8.88e-05 CAAAAAATGT GCGCGGGG GTTGCAGCAG chrIV:9074373-9074453 35 8.88e-05 GCCTTTTTGC CCGCGGCG GCCGCGTTTG chrII:10388219-10388299 42 1.14e-04 ACCCATTTTT CCGCGCCG CCAAATATTT chrIII:4171135-4171215 29 1.14e-04 AATGTCATCT GCGCGCGG CATATCTGCA chrV:13962195-13962275 11 1.14e-04 TGCATAAACT GCGCGCGG CAACTGCAAA chrI:1175825-1175905 53 1.14e-04 TGCAAAAACC GTGCGCCC ACCTTGCAAT chrX:4444282-4444362 20 1.33e-04 GTTTTCACCC ACGCGGCC CGGGTTCGAT chrX:8646496-8646576 24 1.33e-04 GTTTTCACCC ACGCGGCC CGGGTTCGAT chrIII:8307488-8307568 53 1.33e-04 CTCCGAAATA ACGCGGCC GAATTTTTGT chrIII:10432287-10432367 51 1.33e-04 GTTCAAACCT ACGCGGCC CCCATTATCT chrIV:16995560-16995640 59 1.33e-04 TTCCACGGCC ACGCGGCC CCCACCTTCT chrI:11374404-11374484 47 1.61e-04 GTACACGCTG GCGTGGCC GAGCACATCC chrII:9566197-9566277 48 1.61e-04 TTTCATGGCC GCGTGGCC TAATGGATAA chrIV:1745733-1745813 73 1.61e-04 CTCCTATCAA GCGCGCTC chrIV:17087584-17087664 73 1.61e-04 CTTCCCGCAA ACGCGCCC chrIII:11142237-11142317 70 1.61e-04 GAAATTGCAA GCGCGCTC TAC chrIII:4905604-4905684 56 1.61e-04 CGAGTAAAGT GCGTGGCC TAGAAATTCC chrIII:3664357-3664437 41 1.61e-04 GAGAATGTGG GCGTGGCC TTCGCTTGCA chrI:2487858-2487938 31 1.61e-04 GTGTCAGCAA GCGCGCTC CAATGATTAT chrI:8223177-8223257 48 1.87e-04 gtagggcaat gtgcggcg cgccttttcg chrIV:9316200-9316280 22 1.87e-04 GAATAAAACC GTGCGGCG GAATTGCGAA chrV:11124093-11124173 28 1.87e-04 AAAACGCAAA GTGCGGCG CGGTTTTCTC chrI:1958513-1958593 56 1.87e-04 GCGCAACGGT GTGCGGCG GCCTTGCAGT chrII:4238051-4238131 52 1.87e-04 GCGAAAATGC GTGCGGCG CGTTGCAACT chrIII:8768063-8768143 20 1.87e-04 TGAGTAAACT GTGCGGCG TGTTTGCGGA chrI:6283468-6283548 47 2.14e-04 CATCCATCCA GCGCGGAC ACCCGCCCCA chrX:1319989-1320069 14 2.41e-04 CAACACACAC GCGCGCAC CGAGGCACTG chrV:12870096-12870176 39 2.41e-04 AAGAGAAAAC GCGCGCAC TTCCTCTGCC chrII:8325280-8325360 59 2.41e-04 AATTTGCAAT GCGCGCAC GCAGTTTTGC chrV:4181852-4181932 67 2.41e-04 ACTGTACAAC GCGCGGTG CGTAAC chrI:2410138-2410218 30 2.69e-04 GTAAACTGTA GCGCGCTG GTTCGATCCC chrIV:192221-192301 26 2.69e-04 TTTCTCGGCC ACGCGCCG TGTACTCCTC chrIII:13780915-13780995 70 2.69e-04 AACACCGAAA GCGTGGCG GTT chrV:11029487-11029567 15 3.04e-04 TTTTCGATTT CTGCGGCC TCGTCGAGCA chrII:12042347-12042427 66 3.04e-04 CCTGCTGAAT CCGCGGGG TTGGTTT chrX:10435515-10435595 2 3.40e-04 T CCGCGCGG AGTGTCCAGA chrV:14347362-14347442 8 3.40e-04 cgaaaag ccgcgcgg tacctttgct chrII:3502819-3502899 23 4.05e-04 CGAGTTGCAT CCGCGCTC CATTGCGAAT chrI:10642435-10642515 2 4.05e-04 A ACGCGCGC TATGGAATAT chrI:11609223-11609303 14 4.05e-04 ACCCCCTACA CCGTGGCC TAGTGGCTAG chrV:11239317-11239397 51 4.70e-04 CACGCAACCA GTGCGCGG GTTTTTTGCA chrV:9583061-9583141 46 5.19e-04 ACTTTGCAAG CCGCGCAC GCTATTTTGC chrV:7231002-7231082 34 5.19e-04 GTCGCAACCC CCGCGCAC TTTTTATGCA chrII:4791440-4791520 6 5.19e-04 AACAA CCGCGCAC TGTGGCCTAA chrI:2935723-2935803 1 5.88e-04 . GTGTGGCC GAGTGGTTAA chrX:12563795-12563875 54 5.88e-04 GTTCAATCCT GCGTGGGG GCAATTTCTT chrIV:143955-144035 31 5.88e-04 GGTCATGGCC GTGTGGCC TAATGGATAA chrX:14115642-14115722 53 5.88e-04 TTTCGTGGCC GTGTGGCC TAATGGATAA chrX:10568494-10568574 35 5.88e-04 ACGAGCGTTT GTGCGCTC GTTTCTCTTC chrX:12367702-12367782 22 6.37e-04 GGACGAGAGA CCGTGCCG CATCGGAATA chrIII:535320-535400 57 6.37e-04 CGGCATATTT CCGTGCCG TCGATAGCTC chrX:5118096-5118176 25 6.37e-04 AAAGAGTGAG CTGCGGGC AGAATAAGGG chrIII:3175137-3175217 45 6.37e-04 TTGCGGAACA CCGTGCCG CTTGCTTGCA chrII:8062431-8062511 1 6.99e-04 . ACGCGCTC CACTGCATGT chrI:853269-853349 69 6.99e-04 TCCGCTGCAA ACGCGCTC CACT chrII:6734860-6734940 21 6.99e-04 AGAAAAGCAA ACGCGCTC CATTGTTACA chrI:14737436-14737516 55 7.62e-04 TGCAAAATGT GTGCGCAC CACTTGCGGT chrI:5176406-5176486 43 7.62e-04 GCGAAATACC ATGCGGCG GTATTGCTCA chrI:3547001-3547081 64 7.62e-04 TTTGCAAGTG GTGCGCAC ATTTTCAAG chrII:9940600-9940680 18 8.75e-04 AATTTGCCTA CTGCGGGG TCGTAGAAAT chrII:6913443-6913523 71 8.75e-04 TCTAGGCCGT GTGTGCCG CA chrI:1836642-1836722 67 9.37e-04 AGAGAGCGAG ACGCGCTG GTGGAT chrIII:10856980-10857060 5 9.37e-04 GTGT GCGTGGTG ACTCCAAAAC chrIV:9477734-9477814 30 9.90e-04 CACCTGCGCC ATGCGGGC ATAACCAATC chrIV:10821562-10821642 6 9.90e-04 TGAGT GTGCGCAG AGCTTCCTTC chrX:14853988-14854068 53 1.05e-03 CGTGTTTGTT GTGTGGGC AACACTATGG chrI:10026060-10026140 27 1.05e-03 CCACGCGCAA CTGCGCTC TACTGCCAAT chrII:3521514-3521594 50 1.10e-03 CAGGCCGAAA GTGTGCGC CACTCGGTGT chrX:10555613-10555693 11 1.15e-03 TTGTGGCCGG ACGTGGGC CCGAATCGAT chrV:1821395-1821475 60 1.25e-03 CACATGCAAG GCGCGGCA CGCGTTTTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGSCS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:8973682-8973762 8e-06 56_[+1]_16 chrIII:7199009-7199089 8e-06 28_[+1]_44 chrIII:8144749-8144829 8e-06 28_[+1]_44 chrIII:13268993-13269073 1.6e-05 13_[+1]_59 chrI:11323334-11323414 1.6e-05 46_[+1]_26 chrIV:11310732-11310812 2.4e-05 62_[+1]_10 chrIII:4568684-4568764 2.4e-05 39_[+1]_33 chrI:3873927-3874007 3.2e-05 35_[+1]_37 chrIII:1824674-1824754 3.2e-05 47_[+1]_25 chrIV:16946911-16946991 3.2e-05 34_[+1]_38 chrI:5164971-5165051 3.2e-05 24_[+1]_48 chrIII:9868278-9868358 4.8e-05 51_[+1]_21 chrI:461698-461778 4.8e-05 45_[+1]_27 chrV:2638680-2638760 4.8e-05 26_[+1]_46 chrI:9855464-9855544 4.8e-05 14_[+1]_58 chrIII:4930431-4930511 4.8e-05 43_[+1]_29 chrII:3482335-3482415 4.8e-05 41_[+1]_31 chrIV:4042395-4042475 4.8e-05 52_[+1]_20 chrIII:5555082-5555162 6.4e-05 54_[+1]_18 chrI:8615182-8615262 6.4e-05 42_[+1]_30 chrV:4731536-4731616 6.4e-05 65_[+1]_7 chrI:14721594-14721674 6.4e-05 26_[+1]_46 chrIII:3916790-3916870 6.4e-05 41_[+1]_31 chrII:7708750-7708830 6.4e-05 3_[+1]_69 chrIII:11946520-11946600 8.9e-05 6_[+1]_66 chrV:11610641-11610721 8.9e-05 19_[+1]_53 chrIV:9074373-9074453 8.9e-05 34_[+1]_38 chrII:10388219-10388299 0.00011 41_[+1]_31 chrIII:4171135-4171215 0.00011 28_[+1]_44 chrV:13962195-13962275 0.00011 10_[+1]_62 chrI:1175825-1175905 0.00011 52_[+1]_20 chrX:4444282-4444362 0.00013 19_[+1]_53 chrX:8646496-8646576 0.00013 23_[+1]_49 chrIII:8307488-8307568 0.00013 52_[+1]_20 chrIII:10432287-10432367 0.00013 50_[+1]_22 chrIV:16995560-16995640 0.00013 58_[+1]_14 chrI:11374404-11374484 0.00016 46_[+1]_26 chrII:9566197-9566277 0.00016 47_[+1]_25 chrIV:1745733-1745813 0.00016 72_[+1] chrIV:17087584-17087664 0.00016 72_[+1] chrIII:11142237-11142317 0.00016 69_[+1]_3 chrIII:4905604-4905684 0.00016 55_[+1]_17 chrIII:3664357-3664437 0.00016 40_[+1]_32 chrI:2487858-2487938 0.00016 30_[+1]_42 chrI:8223177-8223257 0.00019 47_[+1]_25 chrIV:9316200-9316280 0.00019 21_[+1]_51 chrV:11124093-11124173 0.00019 27_[+1]_45 chrI:1958513-1958593 0.00019 55_[+1]_17 chrII:4238051-4238131 0.00019 51_[+1]_21 chrIII:8768063-8768143 0.00019 19_[+1]_53 chrI:6283468-6283548 0.00021 46_[+1]_26 chrX:1319989-1320069 0.00024 13_[+1]_59 chrV:12870096-12870176 0.00024 38_[+1]_34 chrII:8325280-8325360 0.00024 58_[+1]_14 chrV:4181852-4181932 0.00024 66_[+1]_6 chrI:2410138-2410218 0.00027 29_[+1]_43 chrIV:192221-192301 0.00027 25_[+1]_47 chrIII:13780915-13780995 0.00027 69_[+1]_3 chrV:11029487-11029567 0.0003 14_[+1]_58 chrII:12042347-12042427 0.0003 65_[+1]_7 chrX:10435515-10435595 0.00034 1_[+1]_71 chrV:14347362-14347442 0.00034 7_[+1]_65 chrII:3502819-3502899 0.00041 22_[+1]_50 chrI:10642435-10642515 0.00041 1_[+1]_71 chrI:11609223-11609303 0.00041 13_[+1]_59 chrV:11239317-11239397 0.00047 50_[+1]_22 chrV:9583061-9583141 0.00052 45_[+1]_27 chrV:7231002-7231082 0.00052 33_[+1]_39 chrII:4791440-4791520 0.00052 5_[+1]_67 chrI:2935723-2935803 0.00059 [+1]_72 chrX:12563795-12563875 0.00059 53_[+1]_19 chrIV:143955-144035 0.00059 30_[+1]_42 chrX:14115642-14115722 0.00059 52_[+1]_20 chrX:10568494-10568574 0.00059 34_[+1]_38 chrX:12367702-12367782 0.00064 21_[+1]_51 chrIII:535320-535400 0.00064 56_[+1]_16 chrX:5118096-5118176 0.00064 24_[+1]_48 chrIII:3175137-3175217 0.00064 44_[+1]_28 chrII:8062431-8062511 0.0007 [+1]_72 chrI:853269-853349 0.0007 68_[+1]_4 chrII:6734860-6734940 0.0007 20_[+1]_52 chrI:14737436-14737516 0.00076 54_[+1]_18 chrI:5176406-5176486 0.00076 42_[+1]_30 chrI:3547001-3547081 0.00076 63_[+1]_9 chrII:9940600-9940680 0.00087 17_[+1]_55 chrII:6913443-6913523 0.00087 70_[+1]_2 chrI:1836642-1836722 0.00094 66_[+1]_6 chrIII:10856980-10857060 0.00094 4_[+1]_68 chrIV:9477734-9477814 0.00099 29_[+1]_43 chrIV:10821562-10821642 0.00099 5_[+1]_67 chrX:14853988-14854068 0.0011 52_[+1]_20 chrI:10026060-10026140 0.0011 26_[+1]_46 chrII:3521514-3521594 0.0011 49_[+1]_23 chrX:10555613-10555693 0.0011 10_[+1]_62 chrV:1821395-1821475 0.0013 59_[+1]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGSCS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCGSCS width=8 seqs=95 chrIV:8973682-8973762 ( 57) GCGCGGCC 1 chrIII:7199009-7199089 ( 29) GCGCGGCC 1 chrIII:8144749-8144829 ( 29) GCGCGGCC 1 chrIII:13268993-13269073 ( 14) GCGCGCCC 1 chrI:11323334-11323414 ( 47) GCGCGCCC 1 chrIV:11310732-11310812 ( 63) GCGCGGCG 1 chrIII:4568684-4568764 ( 40) GCGCGGCG 1 chrI:3873927-3874007 ( 36) GCGCGCCG 1 chrIII:1824674-1824754 ( 48) GCGCGCCG 1 chrIV:16946911-16946991 ( 35) GCGCGCCG 1 chrI:5164971-5165051 ( 25) GCGCGCCG 1 chrIII:9868278-9868358 ( 52) CCGCGGCC 1 chrI:461698-461778 ( 46) CCGCGGCC 1 chrV:2638680-2638760 ( 27) CCGCGGCC 1 chrI:9855464-9855544 ( 15) GCGCGGGC 1 chrIII:4930431-4930511 ( 44) CCGCGGCC 1 chrII:3482335-3482415 ( 42) CCGCGGCC 1 chrIV:4042395-4042475 ( 53) CCGCGGCC 1 chrIII:5555082-5555162 ( 55) GCGCGCGC 1 chrI:8615182-8615262 ( 43) CCGCGCCC 1 chrV:4731536-4731616 ( 66) GCGCGCGC 1 chrI:14721594-14721674 ( 27) GCGCGCGC 1 chrIII:3916790-3916870 ( 42) GCGCGCGC 1 chrII:7708750-7708830 ( 4) GCGCGCGC 1 chrIII:11946520-11946600 ( 7) GCGCGGGG 1 chrV:11610641-11610721 ( 20) GCGCGGGG 1 chrIV:9074373-9074453 ( 35) CCGCGGCG 1 chrII:10388219-10388299 ( 42) CCGCGCCG 1 chrIII:4171135-4171215 ( 29) GCGCGCGG 1 chrV:13962195-13962275 ( 11) GCGCGCGG 1 chrI:1175825-1175905 ( 53) GTGCGCCC 1 chrX:4444282-4444362 ( 20) ACGCGGCC 1 chrX:8646496-8646576 ( 24) ACGCGGCC 1 chrIII:8307488-8307568 ( 53) ACGCGGCC 1 chrIII:10432287-10432367 ( 51) ACGCGGCC 1 chrIV:16995560-16995640 ( 59) ACGCGGCC 1 chrI:11374404-11374484 ( 47) GCGTGGCC 1 chrII:9566197-9566277 ( 48) GCGTGGCC 1 chrIV:1745733-1745813 ( 73) GCGCGCTC 1 chrIV:17087584-17087664 ( 73) ACGCGCCC 1 chrIII:11142237-11142317 ( 70) GCGCGCTC 1 chrIII:4905604-4905684 ( 56) GCGTGGCC 1 chrIII:3664357-3664437 ( 41) GCGTGGCC 1 chrI:2487858-2487938 ( 31) GCGCGCTC 1 chrI:8223177-8223257 ( 48) GTGCGGCG 1 chrIV:9316200-9316280 ( 22) GTGCGGCG 1 chrV:11124093-11124173 ( 28) GTGCGGCG 1 chrI:1958513-1958593 ( 56) GTGCGGCG 1 chrII:4238051-4238131 ( 52) GTGCGGCG 1 chrIII:8768063-8768143 ( 20) GTGCGGCG 1 chrI:6283468-6283548 ( 47) GCGCGGAC 1 chrX:1319989-1320069 ( 14) GCGCGCAC 1 chrV:12870096-12870176 ( 39) GCGCGCAC 1 chrII:8325280-8325360 ( 59) GCGCGCAC 1 chrV:4181852-4181932 ( 67) GCGCGGTG 1 chrI:2410138-2410218 ( 30) GCGCGCTG 1 chrIV:192221-192301 ( 26) ACGCGCCG 1 chrIII:13780915-13780995 ( 70) GCGTGGCG 1 chrV:11029487-11029567 ( 15) CTGCGGCC 1 chrII:12042347-12042427 ( 66) CCGCGGGG 1 chrX:10435515-10435595 ( 2) CCGCGCGG 1 chrV:14347362-14347442 ( 8) CCGCGCGG 1 chrII:3502819-3502899 ( 23) CCGCGCTC 1 chrI:10642435-10642515 ( 2) ACGCGCGC 1 chrI:11609223-11609303 ( 14) CCGTGGCC 1 chrV:11239317-11239397 ( 51) GTGCGCGG 1 chrV:9583061-9583141 ( 46) CCGCGCAC 1 chrV:7231002-7231082 ( 34) CCGCGCAC 1 chrII:4791440-4791520 ( 6) CCGCGCAC 1 chrI:2935723-2935803 ( 1) GTGTGGCC 1 chrX:12563795-12563875 ( 54) GCGTGGGG 1 chrIV:143955-144035 ( 31) GTGTGGCC 1 chrX:14115642-14115722 ( 53) GTGTGGCC 1 chrX:10568494-10568574 ( 35) GTGCGCTC 1 chrX:12367702-12367782 ( 22) CCGTGCCG 1 chrIII:535320-535400 ( 57) CCGTGCCG 1 chrX:5118096-5118176 ( 25) CTGCGGGC 1 chrIII:3175137-3175217 ( 45) CCGTGCCG 1 chrII:8062431-8062511 ( 1) ACGCGCTC 1 chrI:853269-853349 ( 69) ACGCGCTC 1 chrII:6734860-6734940 ( 21) ACGCGCTC 1 chrI:14737436-14737516 ( 55) GTGCGCAC 1 chrI:5176406-5176486 ( 43) ATGCGGCG 1 chrI:3547001-3547081 ( 64) GTGCGCAC 1 chrII:9940600-9940680 ( 18) CTGCGGGG 1 chrII:6913443-6913523 ( 71) GTGTGCCG 1 chrI:1836642-1836722 ( 67) ACGCGCTG 1 chrIII:10856980-10857060 ( 5) GCGTGGTG 1 chrIV:9477734-9477814 ( 30) ATGCGGGC 1 chrIV:10821562-10821642 ( 6) GTGCGCAG 1 chrX:14853988-14854068 ( 53) GTGTGGGC 1 chrI:10026060-10026140 ( 27) CTGCGCTC 1 chrII:3521514-3521594 ( 50) GTGTGCGC 1 chrX:10555613-10555693 ( 11) ACGTGGGC 1 chrV:1821395-1821475 ( 60) GCGCGGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGSCS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.16214 E= 6.1e-021 -78 11 138 -1321 -1321 168 -1321 -9 -1321 -1321 214 -1321 -1321 179 -1321 -51 -1321 -1321 214 -1321 -1321 108 116 -1321 -136 117 3 -98 -468 138 74 -1321 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGSCS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 95 E= 6.1e-021 0.157895 0.252632 0.589474 0.000000 0.000000 0.747368 0.000000 0.252632 0.000000 0.000000 1.000000 0.000000 0.000000 0.810526 0.000000 0.189474 0.000000 0.000000 1.000000 0.000000 0.000000 0.494737 0.505263 0.000000 0.105263 0.526316 0.231579 0.136842 0.010526 0.610526 0.378947 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCGSCS MEME-1 regular expression -------------------------------------------------------------------------------- [GC][CT]GCG[GC][CG][CG] -------------------------------------------------------------------------------- Time 5.11 secs. ******************************************************************************** ******************************************************************************** MOTIF CTAGGCCA MEME-2 width = 8 sites = 22 llr = 217 E-value = 4.0e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTAGGCCA MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::8:2::9 pos.-specific C a:2::aa: probability G :::a8::1 matrix T :a:::::: bits 2.1 * * ** 1.9 ** * ** 1.7 ** * ** 1.5 ** **** Relative 1.3 ** ***** Entropy 1.1 ******** (14.2 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTAGGCCA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGGCCA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:5349420-5349500 42 1.29e-05 AAAAAGAAAG CTAGGCCA CCGATGCGGA chrV:15085543-15085623 48 1.29e-05 ATGGAAGAAA CTAGGCCA GCAGGCCACG chrV:13468299-13468379 73 1.29e-05 TGTGCGTTTT CTAGGCCA chrIV:6206550-6206630 25 1.29e-05 GGTTGTAATC CTAGGCCA CCGTGCTGGT chrIII:7520788-7520868 69 1.29e-05 AATTTGGATT CTAGGCCA TGCA chrIII:8319315-8319395 11 1.29e-05 CATCACAATT CTAGGCCA TTTTCAAAGA chrI:8615182-8615262 67 1.29e-05 CAAACTGTTT CTAGGCCA TCTGTA chrV:10356100-10356180 38 1.29e-05 GAGGGATATT CTAGGCCA TATGTAGCAA chrII:13117282-13117362 33 1.29e-05 CCCCGAAATG CTAGGCCA CGCGTCGCGT chrII:3502819-3502899 5 1.29e-05 TTTT CTAGGCCA CGAGTTGCAT chrI:6136555-6136635 14 1.29e-05 GCCGTCAGGT CTAGGCCA CGAAAACATG chrIII:8144749-8144829 59 1.29e-05 GTTCTCAAAT CTAGGCCA TCTCAGTTTT chrIII:11371411-11371491 56 2.42e-05 CACACTGCCA CTCGGCCA CGCGTGCATC chrIV:10483895-10483975 15 2.42e-05 AGCATAAATC CTCGGCCA CGGTTTGTGG chrV:11124093-11124173 52 2.42e-05 TCTCGGGTTC CTCGGCCA TTTTTATCGG chrIV:1388246-1388326 27 5.05e-05 ATCCTAACCA CTAGACCA CATGGGAGGA chrIII:1604728-1604808 31 5.05e-05 ATCCTAACCA CTAGACCA CAACGGAGAT chrII:6913443-6913523 62 5.05e-05 GGAGAGTTTT CTAGGCCG TGTGTGCCGC chrIII:7642170-7642250 45 5.05e-05 ATCCTAACCA CTAGACCA CAACGGAGCG chrX:10821313-10821393 71 5.05e-05 ATCCTAACCA CTAGACCA CA chrI:11374404-11374484 64 7.32e-05 CGAGCACATC CTCGGCCG TGTACTCCT chrII:4791440-4791520 31 7.32e-05 TAACATCCGA CTCGGCCG CCGGCCGTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGGCCA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:5349420-5349500 1.3e-05 41_[+2]_31 chrV:15085543-15085623 1.3e-05 47_[+2]_25 chrV:13468299-13468379 1.3e-05 72_[+2] chrIV:6206550-6206630 1.3e-05 24_[+2]_48 chrIII:7520788-7520868 1.3e-05 68_[+2]_4 chrIII:8319315-8319395 1.3e-05 10_[+2]_62 chrI:8615182-8615262 1.3e-05 66_[+2]_6 chrV:10356100-10356180 1.3e-05 37_[+2]_35 chrII:13117282-13117362 1.3e-05 32_[+2]_40 chrII:3502819-3502899 1.3e-05 4_[+2]_68 chrI:6136555-6136635 1.3e-05 13_[+2]_59 chrIII:8144749-8144829 1.3e-05 58_[+2]_14 chrIII:11371411-11371491 2.4e-05 55_[+2]_17 chrIV:10483895-10483975 2.4e-05 14_[+2]_58 chrV:11124093-11124173 2.4e-05 51_[+2]_21 chrIV:1388246-1388326 5e-05 26_[+2]_46 chrIII:1604728-1604808 5e-05 30_[+2]_42 chrII:6913443-6913523 5e-05 61_[+2]_11 chrIII:7642170-7642250 5e-05 44_[+2]_28 chrX:10821313-10821393 5e-05 70_[+2]_2 chrI:11374404-11374484 7.3e-05 63_[+2]_9 chrII:4791440-4791520 7.3e-05 30_[+2]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGGCCA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTAGGCCA width=8 seqs=22 chrIII:5349420-5349500 ( 42) CTAGGCCA 1 chrV:15085543-15085623 ( 48) CTAGGCCA 1 chrV:13468299-13468379 ( 73) CTAGGCCA 1 chrIV:6206550-6206630 ( 25) CTAGGCCA 1 chrIII:7520788-7520868 ( 69) CTAGGCCA 1 chrIII:8319315-8319395 ( 11) CTAGGCCA 1 chrI:8615182-8615262 ( 67) CTAGGCCA 1 chrV:10356100-10356180 ( 38) CTAGGCCA 1 chrII:13117282-13117362 ( 33) CTAGGCCA 1 chrII:3502819-3502899 ( 5) CTAGGCCA 1 chrI:6136555-6136635 ( 14) CTAGGCCA 1 chrIII:8144749-8144829 ( 59) CTAGGCCA 1 chrIII:11371411-11371491 ( 56) CTCGGCCA 1 chrIV:10483895-10483975 ( 15) CTCGGCCA 1 chrV:11124093-11124173 ( 52) CTCGGCCA 1 chrIV:1388246-1388326 ( 27) CTAGACCA 1 chrIII:1604728-1604808 ( 31) CTAGACCA 1 chrII:6913443-6913523 ( 62) CTAGGCCG 1 chrIII:7642170-7642250 ( 45) CTAGACCA 1 chrX:10821313-10821393 ( 71) CTAGACCA 1 chrI:11374404-11374484 ( 64) CTCGGCCG 1 chrII:4791440-4791520 ( 31) CTCGGCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGGCCA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0499 E= 4.0e-008 -1110 210 -1110 -1110 -1110 -1110 -1110 189 151 -4 -1110 -1110 -1110 -1110 214 -1110 -57 -1110 185 -1110 -1110 210 -1110 -1110 -1110 210 -1110 -1110 167 -1110 -73 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGGCCA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 4.0e-008 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.772727 0.227273 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.181818 0.000000 0.818182 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.863636 0.000000 0.136364 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGGCCA MEME-2 regular expression -------------------------------------------------------------------------------- CT[AC]GGCCA -------------------------------------------------------------------------------- Time 10.23 secs. ******************************************************************************** ******************************************************************************** MOTIF TTKYRAAA MEME-3 width = 8 sites = 96 llr = 638 E-value = 3.2e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTKYRAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 1::167a8 pos.-specific C :::6:3:1 probability G 1:4:4::: matrix T 8a63:::1 bits 2.1 1.9 * * 1.7 * * 1.5 * * Relative 1.3 * * Entropy 1.1 *** *** (9.6 bits) 0.9 *** **** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTCAAAA consensus GTGC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKYRAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:8016002-8016082 52 2.42e-05 TAGAAGAAAA TTTCAAAA ATCAACGTGC chrV:1197429-1197509 23 2.42e-05 TAGAAGAAAA TTTCAAAA ATCAACGTGC chrIV:7654519-7654599 16 2.42e-05 AGCGGTGAGA TTTCAAAA AGGTTTTGTG chrI:10026060-10026140 45 2.42e-05 TACTGCCAAT TTTCAAAA ACGGAATTCT chrIII:10811208-10811288 66 2.42e-05 TAGAAGAAAA TTTCAAAA ATCAACG chrV:11610641-11610721 7 6.50e-05 CTCATC TTGCAAAA AATGTGCGCG chrI:14737436-14737516 44 6.50e-05 TGCGAGCCCT TTGCAAAA TGTGTGCGCA chrI:3873927-3874007 48 6.50e-05 gcgccgcaca ttgcAAAA CTGCAAATGG chrIII:1824674-1824754 38 6.50e-05 TGCGGCGCTC TTGCAAAA TCGCGCGCCG chrV:4731536-4731616 54 6.50e-05 TGCGGGGACA TTGCAAAA ACGCGCGCGC chrIV:16946911-16946991 44 6.50e-05 CGCGCGCCGC TTGCAAAA CTGGGCGGAG chrI:1175825-1175905 42 6.50e-05 TGCGGCACAC TTGCAAAA ACCGTGCGCC chrIV:9316200-9316280 33 8.22e-05 TGCGGCGGAA TTGCGAAA GCATGCGCCG chrIII:13268993-13269073 3 8.22e-05 AC TTGCGAAA ACTGCGCGCC chrI:5176406-5176486 31 8.22e-05 TGTGCGCATG TTGCGAAA TACCATGCGG chrI:14708034-14708114 54 8.22e-05 TCTCTAAAAA TTGCGAAA TAAATTCGAA chrIII:11142237-11142317 6 8.22e-05 ACTTT TTGCGAAA ATTCACTTCT chrII:4238051-4238131 40 8.22e-05 TGCGGCACAC TTGCGAAA ATGCGTGCGG chrX:16930853-16930933 54 8.22e-05 CGAACAACTA TTGCGAAA TCTCGGATCA chrIII:1233570-1233650 3 1.03e-04 TA TTTCACAA AGGATGAGTT chrII:14528451-14528531 58 1.03e-04 AAAAATGTAT TTTCACAA TAAGTGTATA chrI:9064785-9064865 35 1.31e-04 TGACTCAAAA TTTTAAAA AGATTATAAT chrII:14063196-14063276 25 1.31e-04 ACAATTTCTT TTTTAAAA GTTTAGTTTT chrII:1134687-1134767 34 1.31e-04 TAGAAGAAAG TTTTAAAA ATCAACGTGC chrV:10178288-10178368 2 1.31e-04 A TTTTAAAA TCGTTTGTAA chrI:8125528-8125608 12 1.31e-04 TCTTTATGTG TTTTAAAA CTTGTTTTAT chrI:8223177-8223257 61 1.66e-04 cggcgcgcct tttcgcaa gccgccgcgc chrV:11113325-11113405 49 1.66e-04 cggcacgcgt tttcgcaa gtctgccgca chrI:14721594-14721674 38 1.66e-04 CGCGCGCGGT TTTCGCAA TATCGCCGCA chrV:1821395-1821475 73 1.66e-04 CGGCACGCGT TTTCGCAA chrII:9591264-9591344 54 1.66e-04 CAAACAGAAG TTGCACAA TTTTTTGAAA chrIII:3664357-3664437 73 1.66e-04 GCCGCGCGCA TTTCGCAA chrIII:4905604-4905684 13 2.13e-04 TACAATTTCT TTTTGAAA ATTGGTTTGT chrII:8325280-8325360 43 2.13e-04 GCGGAGCTAC TTTTGAAA TTTGCAATGC chrV:11933460-11933540 38 2.13e-04 AAGAAAATAA TTGTAAAA TTGTTATTTA chrIII:8887347-8887427 69 2.28e-04 AGCACTCGAC TTGCGCAA TTCT chrIII:5555082-5555162 44 2.28e-04 CGCGGGGCAC TTGCGCAA AAAGCGCGCG chrI:1958513-1958593 44 2.28e-04 TGCGGCGGTG TTGCGCAA CGGTGTGCGG chrIV:9074373-9074453 50 2.48e-04 GCGGCCGCGT TTGTGAAA GTTCTTCCAT chrIII:8307488-8307568 67 2.48e-04 GGCCGAATTT TTGTGAAA CTTCGG chrII:5594467-5594547 57 2.72e-04 ACTTGAAAGA TTTTACAA CTAAAAAAAT chrII:14144082-14144162 3 2.72e-04 CT TTTTACAA TATATATTTT chrIV:1687294-1687374 42 2.72e-04 TTTTTTCGTT TTTTACAA GCCGGTTTTC chrIV:9191345-9191425 63 3.13e-04 ACAGTTGAGA TTTTGCAA AGGGCGTTTA chrV:9583061-9583141 58 3.13e-04 GCGCACGCTA TTTTGCAA GGTTGTCGCA chrI:3547001-3547081 53 3.13e-04 GGCACGGCAT TTTTGCAA GTGGTGCGCA chrV:1004004-1004084 13 3.13e-04 AATCTAATTT TTGTACAA TTACAAATAC chrV:11239317-11239397 62 3.13e-04 TGCGCGGGTT TTTTGCAA CCCCGCCGCA chrII:7708750-7708830 17 3.13e-04 CGCGCACGGT TTTTGCAA TTCTCCCGCA chrI:7772624-7772704 32 3.34e-04 AACGCATTTC TTTCAAAC TTTATTCACA chrIV:4042395-4042475 26 3.34e-04 AGATATTCAA TTTCAAAC TCGCGCTCTT chrX:1858885-1858965 35 3.86e-04 TTATTTGAAT TTGCAAAC ACATTTTAAC chrIV:11310732-11310812 13 3.86e-04 GACAAGCTAT TTGCAAAC CATGGTAACC chrIII:3916790-3916870 31 3.86e-04 TGCGGCGACT TTGCAAAC ACTGCGCGCG chrIV:8973682-8973762 1 4.29e-04 . TTTAAAAA TCCAACGATG chrX:10591081-10591161 73 4.29e-04 CTATGTTTTC TTTAAAAA chrII:2570630-2570710 46 4.29e-04 AAAAAAAATC TTTAAAAA ACCGGCAAAA chrI:8615182-8615262 28 4.47e-04 ACGGACTAGT TTTCACAC GTTGCAACCG chrV:13468299-13468379 10 5.42e-04 CGAAAATTC TTGAAAAA ATATTCCGAG chrIII:7199009-7199089 56 5.42e-04 GTTGGCGGTA ATTCAAAA ATAATATTTT chrI:1280257-1280337 27 5.42e-04 AACTAATAAT TTGAAAAA AAAAAAGAAA chrIII:8250366-8250446 8 5.42e-04 ATTGGTT TTTTAAAC TATTAAAATT chrI:7251656-7251736 29 5.42e-04 AATTCTCCAG ATTCAAAA GAACGTAGCC chrII:5836494-5836574 58 5.42e-04 TAAATTGCCG TTTTAAAC ATTAAAAGAT chrII:10388219-10388299 70 5.97e-04 TTGCCCGATT TTTCAAAT AAA chrIII:11371411-11371491 12 6.99e-04 TCTTCATTGG TTTTGAAC CAGTGACCTT chrX:12563795-12563875 24 6.99e-04 AGCGTTGGTC TTGTAAAC CAAAGGTCCG chrIII:8319315-8319395 63 6.99e-04 ATTGTTTTTG TTGAGAAA AAGAGAATTA chrII:6913443-6913523 5 6.99e-04 CGAA ATTCGAAA GAAAATTTAT chrIV:192221-192301 59 6.99e-04 GGAACCAATT TTGTAAAC AAAATTTCAG chrV:15002517-15002597 48 6.99e-04 CCGGCCGATG TTTTGAAC GCAGCGAAAC chrIII:11848509-11848589 47 6.99e-04 GCGATCTGTC ATTcgaaa tttttcgatt chrIII:4568684-4568764 73 7.76e-04 CGTGCGGCGC TTGCAAAT chrIII:11119542-11119622 37 7.76e-04 TGGGAAAAAT TTTAACAA TTTGGTTTTC chrI:11323334-11323414 36 7.76e-04 GTGCGGCGGT TTGCAAAT ATCGCGCGCC chrII:9968527-9968607 71 7.76e-04 tgttttttat tttcgaat tt chrIII:3175137-3175217 58 7.76e-04 TGCCGCTTGC TTGCAAAT GGGCGGGGCC chrI:1675979-1676059 3 7.76e-04 TT TTGCGCAC GGAAAAACTC chrIII:3476420-3476500 25 7.76e-04 TGCCCAAAAC TTTAACAA AATCAATAAT chrV:5917875-5917955 63 9.31e-04 AACGGCGGGA GTTCAAAA TTAGTTTTCA chrI:13470333-13470413 54 9.31e-04 ACTCGGTTTT TTTAGCAA AATACTGCGG chrV:11039762-11039842 28 9.31e-04 GATAAAAACT GTTCAAAA AATTAGAAGG chrII:3502819-3502899 33 9.31e-04 CCGCGCTCCA TTGCGAAT ATGGTTAATT chrI:3350199-3350279 28 9.31e-04 TTTAATTGAA ATTCACAA TGATTTTTTC chrI:6252909-6252989 69 9.31e-04 CGACGCTCCG TTTTACAC ACTC chrIII:4378754-4378834 69 1.13e-03 ATTCAAGCGA TTGAGCAA TAAA chrV:13715489-13715569 49 1.13e-03 GAGGACGCAA TTTTAAAT TAAATAATCT chrV:4181852-4181932 8 1.13e-03 GTCGAAA GTGCAAAA GAGGCCCCAC chrI:1415968-1416048 68 1.13e-03 TAGGTGATTG GTGCAAAA CAATT chrIII:5308395-5308475 1 1.21e-03 . ATTTGAAA TACCGCGCAT chrI:12525010-12525090 72 1.21e-03 TTGGCGCGAA ATTTGAAA T chrI:2710662-2710742 25 1.21e-03 TCCTCCGCGT TTTCGCAT CCCCCAAATC chrI:461698-461778 20 1.36e-03 TTCGAGAGGA GTTCACAA GCGGGTGGCC chrII:3482335-3482415 23 1.36e-03 GTGCATTTAA ATGTGAAA AATATCCGTG chrIII:640548-640628 56 1.36e-03 CATTTCTCCA ATGTGAAA TCTCTCAATT chrV:20832780-20832860 13 1.42e-03 GCAAAACATT ATTTACAA AAATTCAATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKYRAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:8016002-8016082 2.4e-05 51_[+3]_21 chrV:1197429-1197509 2.4e-05 22_[+3]_50 chrIV:7654519-7654599 2.4e-05 15_[+3]_57 chrI:10026060-10026140 2.4e-05 44_[+3]_28 chrIII:10811208-10811288 2.4e-05 65_[+3]_7 chrV:11610641-11610721 6.5e-05 6_[+3]_66 chrI:14737436-14737516 6.5e-05 43_[+3]_29 chrI:3873927-3874007 6.5e-05 47_[+3]_25 chrIII:1824674-1824754 6.5e-05 37_[+3]_35 chrV:4731536-4731616 6.5e-05 53_[+3]_19 chrIV:16946911-16946991 6.5e-05 43_[+3]_29 chrI:1175825-1175905 6.5e-05 41_[+3]_31 chrIV:9316200-9316280 8.2e-05 32_[+3]_40 chrIII:13268993-13269073 8.2e-05 2_[+3]_70 chrI:5176406-5176486 8.2e-05 30_[+3]_42 chrI:14708034-14708114 8.2e-05 53_[+3]_19 chrIII:11142237-11142317 8.2e-05 5_[+3]_67 chrII:4238051-4238131 8.2e-05 39_[+3]_33 chrX:16930853-16930933 8.2e-05 53_[+3]_19 chrIII:1233570-1233650 0.0001 2_[+3]_70 chrII:14528451-14528531 0.0001 57_[+3]_15 chrI:9064785-9064865 0.00013 34_[+3]_38 chrII:14063196-14063276 0.00013 24_[+3]_48 chrII:1134687-1134767 0.00013 33_[+3]_39 chrV:10178288-10178368 0.00013 1_[+3]_71 chrI:8125528-8125608 0.00013 11_[+3]_61 chrI:8223177-8223257 0.00017 60_[+3]_12 chrV:11113325-11113405 0.00017 48_[+3]_24 chrI:14721594-14721674 0.00017 37_[+3]_35 chrV:1821395-1821475 0.00017 72_[+3] chrII:9591264-9591344 0.00017 53_[+3]_19 chrIII:3664357-3664437 0.00017 72_[+3] chrIII:4905604-4905684 0.00021 12_[+3]_60 chrII:8325280-8325360 0.00021 42_[+3]_30 chrV:11933460-11933540 0.00021 37_[+3]_35 chrIII:8887347-8887427 0.00023 68_[+3]_4 chrIII:5555082-5555162 0.00023 43_[+3]_29 chrI:1958513-1958593 0.00023 43_[+3]_29 chrIV:9074373-9074453 0.00025 49_[+3]_23 chrIII:8307488-8307568 0.00025 66_[+3]_6 chrII:5594467-5594547 0.00027 56_[+3]_16 chrII:14144082-14144162 0.00027 2_[+3]_70 chrIV:1687294-1687374 0.00027 41_[+3]_31 chrIV:9191345-9191425 0.00031 62_[+3]_10 chrV:9583061-9583141 0.00031 57_[+3]_15 chrI:3547001-3547081 0.00031 52_[+3]_20 chrV:1004004-1004084 0.00031 12_[+3]_60 chrV:11239317-11239397 0.00031 61_[+3]_11 chrII:7708750-7708830 0.00031 16_[+3]_56 chrI:7772624-7772704 0.00033 31_[+3]_41 chrIV:4042395-4042475 0.00033 25_[+3]_47 chrX:1858885-1858965 0.00039 34_[+3]_38 chrIV:11310732-11310812 0.00039 12_[+3]_60 chrIII:3916790-3916870 0.00039 30_[+3]_42 chrIV:8973682-8973762 0.00043 [+3]_72 chrX:10591081-10591161 0.00043 72_[+3] chrII:2570630-2570710 0.00043 45_[+3]_27 chrI:8615182-8615262 0.00045 27_[+3]_45 chrV:13468299-13468379 0.00054 9_[+3]_63 chrIII:7199009-7199089 0.00054 55_[+3]_17 chrI:1280257-1280337 0.00054 26_[+3]_46 chrIII:8250366-8250446 0.00054 7_[+3]_65 chrI:7251656-7251736 0.00054 28_[+3]_44 chrII:5836494-5836574 0.00054 57_[+3]_15 chrII:10388219-10388299 0.0006 69_[+3]_3 chrIII:11371411-11371491 0.0007 11_[+3]_61 chrX:12563795-12563875 0.0007 23_[+3]_49 chrIII:8319315-8319395 0.0007 62_[+3]_10 chrII:6913443-6913523 0.0007 4_[+3]_68 chrIV:192221-192301 0.0007 58_[+3]_14 chrV:15002517-15002597 0.0007 47_[+3]_25 chrIII:11848509-11848589 0.0007 46_[+3]_26 chrIII:4568684-4568764 0.00078 72_[+3] chrIII:11119542-11119622 0.00078 36_[+3]_36 chrI:11323334-11323414 0.00078 35_[+3]_37 chrII:9968527-9968607 0.00078 70_[+3]_2 chrIII:3175137-3175217 0.00078 57_[+3]_15 chrI:1675979-1676059 0.00078 2_[+3]_70 chrIII:3476420-3476500 0.00078 24_[+3]_48 chrV:5917875-5917955 0.00093 62_[+3]_10 chrI:13470333-13470413 0.00093 53_[+3]_19 chrV:11039762-11039842 0.00093 27_[+3]_45 chrII:3502819-3502899 0.00093 32_[+3]_40 chrI:3350199-3350279 0.00093 27_[+3]_45 chrI:6252909-6252989 0.00093 68_[+3]_4 chrIII:4378754-4378834 0.0011 68_[+3]_4 chrV:13715489-13715569 0.0011 48_[+3]_24 chrV:4181852-4181932 0.0011 7_[+3]_65 chrI:1415968-1416048 0.0011 67_[+3]_5 chrIII:5308395-5308475 0.0012 [+3]_72 chrI:12525010-12525090 0.0012 71_[+3]_1 chrI:2710662-2710742 0.0012 24_[+3]_48 chrI:461698-461778 0.0014 19_[+3]_53 chrII:3482335-3482415 0.0014 22_[+3]_50 chrIII:640548-640628 0.0014 55_[+3]_17 chrV:20832780-20832860 0.0014 12_[+3]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKYRAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTKYRAAA width=8 seqs=96 chrIV:8016002-8016082 ( 52) TTTCAAAA 1 chrV:1197429-1197509 ( 23) TTTCAAAA 1 chrIV:7654519-7654599 ( 16) TTTCAAAA 1 chrI:10026060-10026140 ( 45) TTTCAAAA 1 chrIII:10811208-10811288 ( 66) TTTCAAAA 1 chrV:11610641-11610721 ( 7) TTGCAAAA 1 chrI:14737436-14737516 ( 44) TTGCAAAA 1 chrI:3873927-3874007 ( 48) TTGCAAAA 1 chrIII:1824674-1824754 ( 38) TTGCAAAA 1 chrV:4731536-4731616 ( 54) TTGCAAAA 1 chrIV:16946911-16946991 ( 44) TTGCAAAA 1 chrI:1175825-1175905 ( 42) TTGCAAAA 1 chrIV:9316200-9316280 ( 33) TTGCGAAA 1 chrIII:13268993-13269073 ( 3) TTGCGAAA 1 chrI:5176406-5176486 ( 31) TTGCGAAA 1 chrI:14708034-14708114 ( 54) TTGCGAAA 1 chrIII:11142237-11142317 ( 6) TTGCGAAA 1 chrII:4238051-4238131 ( 40) TTGCGAAA 1 chrX:16930853-16930933 ( 54) TTGCGAAA 1 chrIII:1233570-1233650 ( 3) TTTCACAA 1 chrII:14528451-14528531 ( 58) TTTCACAA 1 chrI:9064785-9064865 ( 35) TTTTAAAA 1 chrII:14063196-14063276 ( 25) TTTTAAAA 1 chrII:1134687-1134767 ( 34) TTTTAAAA 1 chrV:10178288-10178368 ( 2) TTTTAAAA 1 chrI:8125528-8125608 ( 12) TTTTAAAA 1 chrI:8223177-8223257 ( 61) TTTCGCAA 1 chrV:11113325-11113405 ( 49) TTTCGCAA 1 chrI:14721594-14721674 ( 38) TTTCGCAA 1 chrV:1821395-1821475 ( 73) TTTCGCAA 1 chrII:9591264-9591344 ( 54) TTGCACAA 1 chrIII:3664357-3664437 ( 73) TTTCGCAA 1 chrIII:4905604-4905684 ( 13) TTTTGAAA 1 chrII:8325280-8325360 ( 43) TTTTGAAA 1 chrV:11933460-11933540 ( 38) TTGTAAAA 1 chrIII:8887347-8887427 ( 69) TTGCGCAA 1 chrIII:5555082-5555162 ( 44) TTGCGCAA 1 chrI:1958513-1958593 ( 44) TTGCGCAA 1 chrIV:9074373-9074453 ( 50) TTGTGAAA 1 chrIII:8307488-8307568 ( 67) TTGTGAAA 1 chrII:5594467-5594547 ( 57) TTTTACAA 1 chrII:14144082-14144162 ( 3) TTTTACAA 1 chrIV:1687294-1687374 ( 42) TTTTACAA 1 chrIV:9191345-9191425 ( 63) TTTTGCAA 1 chrV:9583061-9583141 ( 58) TTTTGCAA 1 chrI:3547001-3547081 ( 53) TTTTGCAA 1 chrV:1004004-1004084 ( 13) TTGTACAA 1 chrV:11239317-11239397 ( 62) TTTTGCAA 1 chrII:7708750-7708830 ( 17) TTTTGCAA 1 chrI:7772624-7772704 ( 32) TTTCAAAC 1 chrIV:4042395-4042475 ( 26) TTTCAAAC 1 chrX:1858885-1858965 ( 35) TTGCAAAC 1 chrIV:11310732-11310812 ( 13) TTGCAAAC 1 chrIII:3916790-3916870 ( 31) TTGCAAAC 1 chrIV:8973682-8973762 ( 1) TTTAAAAA 1 chrX:10591081-10591161 ( 73) TTTAAAAA 1 chrII:2570630-2570710 ( 46) TTTAAAAA 1 chrI:8615182-8615262 ( 28) TTTCACAC 1 chrV:13468299-13468379 ( 10) TTGAAAAA 1 chrIII:7199009-7199089 ( 56) ATTCAAAA 1 chrI:1280257-1280337 ( 27) TTGAAAAA 1 chrIII:8250366-8250446 ( 8) TTTTAAAC 1 chrI:7251656-7251736 ( 29) ATTCAAAA 1 chrII:5836494-5836574 ( 58) TTTTAAAC 1 chrII:10388219-10388299 ( 70) TTTCAAAT 1 chrIII:11371411-11371491 ( 12) TTTTGAAC 1 chrX:12563795-12563875 ( 24) TTGTAAAC 1 chrIII:8319315-8319395 ( 63) TTGAGAAA 1 chrII:6913443-6913523 ( 5) ATTCGAAA 1 chrIV:192221-192301 ( 59) TTGTAAAC 1 chrV:15002517-15002597 ( 48) TTTTGAAC 1 chrIII:11848509-11848589 ( 47) ATTCGAAA 1 chrIII:4568684-4568764 ( 73) TTGCAAAT 1 chrIII:11119542-11119622 ( 37) TTTAACAA 1 chrI:11323334-11323414 ( 36) TTGCAAAT 1 chrII:9968527-9968607 ( 71) TTTCGAAT 1 chrIII:3175137-3175217 ( 58) TTGCAAAT 1 chrI:1675979-1676059 ( 3) TTGCGCAC 1 chrIII:3476420-3476500 ( 25) TTTAACAA 1 chrV:5917875-5917955 ( 63) GTTCAAAA 1 chrI:13470333-13470413 ( 54) TTTAGCAA 1 chrV:11039762-11039842 ( 28) GTTCAAAA 1 chrII:3502819-3502899 ( 33) TTGCGAAT 1 chrI:3350199-3350279 ( 28) ATTCACAA 1 chrI:6252909-6252989 ( 69) TTTTACAC 1 chrIII:4378754-4378834 ( 69) TTGAGCAA 1 chrV:13715489-13715569 ( 49) TTTTAAAT 1 chrV:4181852-4181932 ( 8) GTGCAAAA 1 chrI:1415968-1416048 ( 68) GTGCAAAA 1 chrIII:5308395-5308475 ( 1) ATTTGAAA 1 chrI:12525010-12525090 ( 72) ATTTGAAA 1 chrI:2710662-2710742 ( 25) TTTCGCAT 1 chrI:461698-461778 ( 20) GTTCACAA 1 chrII:3482335-3482415 ( 23) ATGTGAAA 1 chrIII:640548-640628 ( 56) ATGTGAAA 1 chrV:20832780-20832860 ( 13) ATTTACAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKYRAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.66664 E= 3.2e-005 -138 -1323 -212 165 -1323 -1323 -1323 189 -1323 -1323 88 112 -138 127 -1323 31 113 -1323 84 -1323 132 47 -1323 -1323 189 -1323 -1323 -1323 151 -68 -1323 -169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKYRAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 96 E= 3.2e-005 0.104167 0.000000 0.052083 0.843750 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.416667 0.583333 0.104167 0.562500 0.000000 0.333333 0.593750 0.000000 0.406250 0.000000 0.677083 0.322917 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.770833 0.145833 0.000000 0.083333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTKYRAAA MEME-3 regular expression -------------------------------------------------------------------------------- TT[TG][CT][AG][AC]AA -------------------------------------------------------------------------------- Time 14.88 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGCGGAG MEME-4 width = 8 sites = 11 llr = 120 E-value = 3.4e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGCGGAG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::::8: pos.-specific C ::1a:::: probability G aa9:aa2a matrix T :::::::: bits 2.1 ** *** * 1.9 ** *** * 1.7 ****** * 1.5 ****** * Relative 1.3 ******** Entropy 1.1 ******** (15.8 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGCGGAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGAG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:3873927-3874007 64 8.64e-06 AACTGCAAAT GGGCGGAG TTTCTGCGT chrIII:3916790-3916870 61 8.64e-06 GCTTGCAAGT GGGCGGAG TTACTGAATA chrIV:16946911-16946991 54 8.64e-06 TTGCAAAACT GGGCGGAG CCACGCGGAA chrV:13962195-13962275 32 8.64e-06 CTGCAAAAAA GGGCGGAG CCCGCGTAAA chrX:5118096-5118176 48 8.64e-06 AAGGGAAGCT GGGCGGAG CTAGAGCAGA chrI:3547001-3547081 18 8.64e-06 AAGAAATAGT GGGCGGAG TCGATAATTG chrIV:16863643-16863723 15 8.64e-06 GCGGTTCTAT GGGCGGAG TTTAGCGAAC chrV:7231002-7231082 4 8.64e-06 AGT GGGCGGAG CGTGAAGCAG chrI:9249384-9249464 17 1.59e-05 ACGGAAAAGA GGGCGGGG TTGAGACTCC chrIII:3175137-3175217 66 1.59e-05 GCTTGCAAAT GGGCGGGG CCTAGCT chrII:6913443-6913523 48 2.48e-05 CACGACTGAT GGCCGGAG AGTTTTCTAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGAG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:3873927-3874007 8.6e-06 63_[+4]_9 chrIII:3916790-3916870 8.6e-06 60_[+4]_12 chrIV:16946911-16946991 8.6e-06 53_[+4]_19 chrV:13962195-13962275 8.6e-06 31_[+4]_41 chrX:5118096-5118176 8.6e-06 47_[+4]_25 chrI:3547001-3547081 8.6e-06 17_[+4]_55 chrIV:16863643-16863723 8.6e-06 14_[+4]_58 chrV:7231002-7231082 8.6e-06 3_[+4]_69 chrI:9249384-9249464 1.6e-05 16_[+4]_56 chrIII:3175137-3175217 1.6e-05 65_[+4]_7 chrII:6913443-6913523 2.5e-05 47_[+4]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGAG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGCGGAG width=8 seqs=11 chrI:3873927-3874007 ( 64) GGGCGGAG 1 chrIII:3916790-3916870 ( 61) GGGCGGAG 1 chrIV:16946911-16946991 ( 54) GGGCGGAG 1 chrV:13962195-13962275 ( 32) GGGCGGAG 1 chrX:5118096-5118176 ( 48) GGGCGGAG 1 chrI:3547001-3547081 ( 18) GGGCGGAG 1 chrIV:16863643-16863723 ( 15) GGGCGGAG 1 chrV:7231002-7231082 ( 4) GGGCGGAG 1 chrI:9249384-9249464 ( 17) GGGCGGGG 1 chrIII:3175137-3175217 ( 66) GGGCGGGG 1 chrII:6913443-6913523 ( 48) GGCCGGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGAG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.2293 E= 3.4e-002 -1010 -1010 214 -1010 -1010 -1010 214 -1010 -1010 -136 200 -1010 -1010 210 -1010 -1010 -1010 -1010 214 -1010 -1010 -1010 214 -1010 160 -1010 -32 -1010 -1010 -1010 214 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGAG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 3.4e-002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.090909 0.909091 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.818182 0.000000 0.181818 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGCGGAG MEME-4 regular expression -------------------------------------------------------------------------------- GGGCGGAG -------------------------------------------------------------------------------- Time 18.23 secs. ******************************************************************************** ******************************************************************************** MOTIF YGTGCGGC MEME-5 width = 8 sites = 14 llr = 144 E-value = 4.1e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGTGCGGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 6:::7::a probability G :a:a3aa: matrix T 4:a::::: bits 2.1 * * *** 1.9 *** *** 1.7 *** *** 1.5 *** *** Relative 1.3 ******* Entropy 1.1 ******** (14.9 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGTGCGGC consensus T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGTGCGGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:3873927-3874007 14 9.15e-06 CCATGACTTT Cgtgcggc gagattgcga chrIII:4568684-4568764 63 9.15e-06 GCGAGAAACA CGTGCGGC GCTTGCAAAT chrIII:1824674-1824754 26 9.15e-06 AACTAAACCC CGTGCGGC GCTCTTGCAA chrII:4238051-4238131 28 9.15e-06 TAAAATGCCT CGTGCGGC ACACTTGCGA chrI:1175825-1175905 30 9.15e-06 ACATAAACTC CGTGCGGC ACACTTGCAA chrV:11113325-11113405 35 1.97e-05 CCAAACgcaa tgtgcggc acgcgttttc chrI:1958513-1958593 32 1.97e-05 ACGGGAATTG TGTGCGGC GGTGTTGCGC chrIII:3916790-3916870 19 1.97e-05 ACCTAAAGTG TGTGCGGC GACTTTGCAA chrI:11323334-11323414 25 1.97e-05 ATGTCAAGTG TGTGCGGC GGTTTGCAAA chrIII:3175137-3175217 23 1.97e-05 CTCTTAACTC TGTGCGGC ACCATTGCGG chrII:10248526-10248606 2 2.86e-05 T CGTGGGGC CTCAGATGTG chrI:2996335-2996415 16 2.86e-05 CTCCCCTTTT CGTGGGGC CTCAATAAAT chrIII:10123780-10123860 17 2.86e-05 CTCCCCTTTT CGTGGGGC CTCTGTTAAT chrIII:3499982-3500062 29 2.86e-05 TTCCCGCTTT CGTGGGGC CTCAAACCCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGTGCGGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:3873927-3874007 9.2e-06 13_[+5]_59 chrIII:4568684-4568764 9.2e-06 62_[+5]_10 chrIII:1824674-1824754 9.2e-06 25_[+5]_47 chrII:4238051-4238131 9.2e-06 27_[+5]_45 chrI:1175825-1175905 9.2e-06 29_[+5]_43 chrV:11113325-11113405 2e-05 34_[+5]_38 chrI:1958513-1958593 2e-05 31_[+5]_41 chrIII:3916790-3916870 2e-05 18_[+5]_54 chrI:11323334-11323414 2e-05 24_[+5]_48 chrIII:3175137-3175217 2e-05 22_[+5]_50 chrII:10248526-10248606 2.9e-05 1_[+5]_71 chrI:2996335-2996415 2.9e-05 15_[+5]_57 chrIII:10123780-10123860 2.9e-05 16_[+5]_56 chrIII:3499982-3500062 2.9e-05 28_[+5]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGTGCGGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGTGCGGC width=8 seqs=14 chrI:3873927-3874007 ( 14) CGTGCGGC 1 chrIII:4568684-4568764 ( 63) CGTGCGGC 1 chrIII:1824674-1824754 ( 26) CGTGCGGC 1 chrII:4238051-4238131 ( 28) CGTGCGGC 1 chrI:1175825-1175905 ( 30) CGTGCGGC 1 chrV:11113325-11113405 ( 35) TGTGCGGC 1 chrI:1958513-1958593 ( 32) TGTGCGGC 1 chrIII:3916790-3916870 ( 19) TGTGCGGC 1 chrI:11323334-11323414 ( 25) TGTGCGGC 1 chrIII:3175137-3175217 ( 23) TGTGCGGC 1 chrII:10248526-10248606 ( 2) CGTGGGGC 1 chrI:2996335-2996415 ( 16) CGTGGGGC 1 chrIII:10123780-10123860 ( 17) CGTGGGGC 1 chrIII:3499982-3500062 ( 29) CGTGGGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGTGCGGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.5702 E= 4.1e-002 -1045 146 -1045 41 -1045 -1045 214 -1045 -1045 -1045 -1045 189 -1045 -1045 214 -1045 -1045 161 33 -1045 -1045 -1045 214 -1045 -1045 -1045 214 -1045 -1045 210 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGTGCGGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 4.1e-002 0.000000 0.642857 0.000000 0.357143 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.714286 0.285714 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGTGCGGC MEME-5 regular expression -------------------------------------------------------------------------------- [CT]GTG[CG]GGC -------------------------------------------------------------------------------- Time 21.60 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:2487858-2487938 7.81e-02 80 chrIV:1687294-1687374 5.48e-01 80 chrIII:10856980-10857060 2.25e-01 80 chrIII:3499982-3500062 7.18e-02 28_[+5(2.86e-05)]_44 chrI:13421174-13421254 9.41e-01 80 chrV:16553068-16553148 9.93e-01 80 chrV:20832780-20832860 8.86e-01 80 chrIII:3476420-3476500 5.30e-01 80 chrII:2570630-2570710 7.17e-01 80 chrI:3176599-3176679 1.22e-01 80 chrIV:17108345-17108425 7.84e-01 80 chrII:8137426-8137506 9.83e-01 80 chrI:2996043-2996123 5.17e-01 80 chrIII:11091858-11091938 8.62e-01 80 chrV:11933460-11933540 5.72e-01 80 chrIII:11093663-11093743 9.09e-01 80 chrIII:10811208-10811288 6.68e-02 65_[+3(2.42e-05)]_7 chrII:5836494-5836574 7.21e-01 80 chrI:2710662-2710742 2.73e-01 80 chrI:7251656-7251736 2.52e-01 80 chrI:13422533-13422613 4.15e-01 80 chrII:12042347-12042427 8.22e-02 80 chrI:1675979-1676059 1.32e-01 80 chrI:4967569-4967649 8.52e-01 80 chrIII:11832806-11832886 7.96e-02 80 chrI:10026060-10026140 1.88e-02 44_[+3(2.42e-05)]_28 chrIV:4042395-4042475 1.61e-03 52_[+1(4.78e-05)]_20 chrIII:640548-640628 8.80e-01 80 chrII:7072740-7072820 9.65e-01 80 chrII:14528451-14528531 4.25e-01 80 chrI:8125528-8125608 5.01e-01 80 chrII:4791440-4791520 2.16e-02 30_[+2(7.32e-05)]_42 chrI:11609223-11609303 1.53e-01 80 chrIII:10123780-10123860 2.83e-02 16_[+5(2.86e-05)]_56 chrV:7231002-7231082 2.05e-03 3_[+4(8.64e-06)]_69 chrIII:8250366-8250446 3.72e-01 80 chrI:10469016-10469096 5.17e-01 80 chrI:1415968-1416048 6.05e-01 80 chrIII:8144749-8144829 3.16e-05 28_[+1(7.96e-06)]_22_[+2(1.29e-05)]_\ 14 chrIII:13780915-13780995 1.01e-01 80 chrII:6734860-6734940 5.80e-01 80 chrI:853269-853349 1.01e-01 80 chrI:6252909-6252989 3.44e-01 80 chrI:1213488-1213568 1.00e+00 80 chrIII:13474610-13474690 4.99e-01 80 chrIII:1233570-1233650 3.96e-02 80 chrII:6741564-6741644 2.78e-01 80 chrIII:6551636-6551716 7.00e-01 80 chrI:13418745-13418825 6.36e-01 80 chrIII:3664357-3664437 2.65e-03 80 chrIII:11848509-11848589 6.44e-01 80 chrIV:7654519-7654599 1.48e-02 15_[+3(2.42e-05)]_57 chrI:933436-933516 9.61e-01 80 chrIII:3175137-3175217 2.28e-05 22_[+5(1.97e-05)]_35_[+4(1.59e-05)]_\ 7 chrX:10821313-10821393 4.49e-03 70_[+2(5.05e-05)]_2 chrV:4181852-4181932 1.24e-02 80 chrV:10178288-10178368 4.43e-01 80 chrI:12525010-12525090 1.93e-01 80 chrV:10235705-10235785 6.05e-01 80 chrX:10859663-10859743 9.48e-01 80 chrII:3482335-3482415 2.06e-04 41_[+1(4.78e-05)]_31 chrIII:5069000-5069080 9.51e-01 80 chrV:18712030-18712110 9.85e-01 80 chrIV:2033201-2033281 6.25e-01 80 chrIV:17099263-17099343 7.07e-03 80 chrI:1823222-1823302 1.16e-01 80 chrX:10568494-10568574 3.31e-01 80 chrII:7708750-7708830 3.48e-03 3_[+1(6.42e-05)]_69 chrIV:11635762-11635842 9.90e-01 80 chrIV:14787978-14788058 9.25e-01 80 chrIV:16863643-16863723 1.97e-02 14_[+4(8.64e-06)]_58 chrII:14405737-14405817 9.47e-01 80 chrI:6283468-6283548 1.01e-01 80 chrV:11239317-11239397 1.07e-02 80 chrV:15136917-15136997 8.30e-01 80 chrII:1134687-1134767 8.59e-02 80 chrI:1280257-1280337 6.04e-01 80 chrIII:7642170-7642250 2.26e-02 44_[+2(5.05e-05)]_28 chrII:14144082-14144162 4.37e-01 80 chrIV:796676-796756 6.38e-01 80 chrI:3350199-3350279 8.34e-01 80 chrV:13715489-13715569 5.31e-01 80 chrIV:10821562-10821642 2.80e-01 80 chrV:1004004-1004084 6.05e-01 80 chrI:6446630-6446710 3.88e-01 80 chrII:5594467-5594547 5.96e-01 80 chrI:1175825-1175905 7.75e-05 29_[+5(9.15e-06)]_4_[+3(6.50e-05)]_\ 31 chrIII:11317253-11317333 2.79e-01 80 chrIV:7486395-7486475 3.54e-01 80 chrI:10642435-10642515 3.11e-01 80 chrI:3547001-3547081 5.72e-04 17_[+4(8.64e-06)]_55 chrIII:8768063-8768143 9.72e-04 18_[+5(1.97e-05)]_54 chrX:10591081-10591161 6.27e-01 80 chrI:7772624-7772704 2.63e-01 80 chrI:5164971-5165051 6.95e-03 24_[+1(3.19e-05)]_48 chrII:8325280-8325360 2.37e-03 80 chrV:9583061-9583141 6.44e-02 80 chrIII:4905604-4905684 9.09e-03 80 chrIV:16995560-16995640 6.73e-03 80 chrI:4958850-4958930 8.05e-01 80 chrX:5118096-5118176 4.76e-04 47_[+4(8.64e-06)]_25 chrI:2996335-2996415 4.61e-02 15_[+5(2.86e-05)]_57 chrIII:2697359-2697439 9.91e-01 80 chrII:14063196-14063276 4.76e-01 80 chrV:13962195-13962275 2.97e-05 31_[+4(8.64e-06)]_41 chrX:16930853-16930933 3.47e-01 53_[+3(8.22e-05)]_19 chrII:4238051-4238131 1.19e-05 27_[+5(9.15e-06)]_4_[+3(8.22e-05)]_\ 3_[+5(9.15e-06)]_22 chrIV:16946911-16946991 4.66e-06 34_[+1(3.19e-05)]_1_[+3(6.50e-05)]_\ 2_[+4(8.64e-06)]_19 chrI:6136555-6136635 4.12e-02 13_[+2(1.29e-05)]_59 chrII:9968527-9968607 4.63e-01 80 chrX:12692080-12692160 8.04e-01 80 chrII:3502819-3502899 2.04e-03 4_[+2(1.29e-05)]_68 chrV:13396497-13396577 9.57e-01 80 chrIII:10432287-10432367 5.03e-02 80 chrII:15008714-15008794 7.11e-01 80 chrIII:11142237-11142317 2.61e-02 5_[+3(8.22e-05)]_67 chrI:27107-27187 2.59e-01 80 chrX:12890261-12890341 3.28e-01 80 chrIV:410720-410800 4.50e-01 80 chrII:9591264-9591344 1.19e-02 80 chrI:11323334-11323414 1.84e-05 24_[+5(1.97e-05)]_14_[+1(1.62e-05)]_\ 26 chrV:2673983-2674063 7.97e-01 80 chrI:9249384-9249464 5.09e-03 16_[+4(1.59e-05)]_56 chrI:7518918-7518998 7.44e-01 80 chrI:14708034-14708114 4.04e-01 53_[+3(8.22e-05)]_19 chrIII:3916790-3916870 1.35e-06 18_[+5(1.97e-05)]_15_[+1(6.42e-05)]_\ 11_[+4(8.64e-06)]_12 chrIII:1540295-1540375 7.10e-01 80 chrIII:11119542-11119622 7.67e-01 80 chrV:18720334-18720414 5.74e-01 80 chrII:13117282-13117362 2.83e-02 32_[+2(1.29e-05)]_40 chrV:1821395-1821475 7.90e-03 80 chrV:11039762-11039842 9.58e-02 80 chrI:14721594-14721674 7.80e-04 24_[+1(6.42e-05)]_48 chrIII:7199009-7199089 3.50e-05 28_[+1(7.96e-06)]_44 chrX:14115642-14115722 1.98e-02 51_[+5(7.93e-05)]_21 chrX:14804877-14804957 6.75e-01 80 chrI:5176406-5176486 3.70e-03 30_[+3(8.22e-05)]_42 chrV:15002517-15002597 2.77e-01 80 chrV:10356100-10356180 7.34e-03 37_[+2(1.29e-05)]_35 chrX:17315095-17315175 5.05e-01 80 chrIII:4930431-4930511 9.72e-03 43_[+1(4.78e-05)]_29 chrI:13470333-13470413 4.10e-01 80 chrIV:6646142-6646222 8.25e-01 80 chrX:4789130-4789210 4.48e-01 80 chrX:3969492-3969572 2.29e-01 80 chrI:9855464-9855544 4.42e-02 14_[+1(4.78e-05)]_58 chrV:4731536-4731616 9.99e-05 53_[+3(6.50e-05)]_2_[+1(6.42e-05)]_\ 9 chrII:8062431-8062511 2.47e-01 80 chrX:9296754-9296834 3.91e-01 80 chrV:14347362-14347442 8.46e-02 80 chrV:11029487-11029567 2.67e-02 80 chrI:9064785-9064865 4.50e-01 80 chrII:6248700-6248780 8.47e-01 80 chrIII:1824674-1824754 1.35e-06 25_[+5(9.15e-06)]_4_[+3(6.50e-05)]_\ 2_[+1(3.19e-05)]_25 chrIV:16415311-16415391 8.15e-01 80 chrIII:7030546-7030626 5.86e-01 80 chrIV:17087584-17087664 1.82e-01 80 chrIII:4568684-4568764 2.32e-05 39_[+1(2.39e-05)]_15_[+5(9.15e-06)]_\ 10 chrV:1875685-1875765 7.71e-01 80 chrII:4603187-4603267 4.74e-02 80 chrIV:192221-192301 1.63e-03 18_[+2(2.42e-05)]_54 chrI:8615182-8615262 2.81e-04 42_[+1(6.42e-05)]_16_[+2(1.29e-05)]_\ 6 chrII:13199917-13199997 8.74e-01 80 chrV:2638680-2638760 1.41e-03 26_[+1(4.78e-05)]_46 chrIV:1745733-1745813 7.30e-02 80 chrIII:4171135-4171215 5.77e-03 80 chrIII:535320-535400 2.86e-01 80 chrIV:11310732-11310812 2.29e-04 62_[+1(2.39e-05)]_10 chrI:1958513-1958593 1.17e-04 31_[+5(1.97e-05)]_15_[+5(1.97e-05)]_\ 18 chrIV:11026169-11026249 6.78e-01 80 chrIV:9477734-9477814 3.99e-02 80 chrIII:13268993-13269073 2.17e-03 2_[+3(8.22e-05)]_3_[+1(1.62e-05)]_\ 59 chrII:6913443-6913523 7.68e-06 47_[+4(2.48e-05)]_6_[+2(5.05e-05)]_\ 11 chrII:7001567-7001647 5.19e-01 80 chrIV:385286-385366 1.99e-01 80 chrII:6061654-6061734 6.10e-03 80 chrIII:8319315-8319395 6.23e-03 10_[+2(1.29e-05)]_62 chrV:11124093-11124173 1.59e-05 26_[+5(5.82e-05)]_17_[+2(2.42e-05)]_\ 21 chrV:1197429-1197509 2.10e-02 22_[+3(2.42e-05)]_50 chrV:12870096-12870176 2.57e-02 80 chrI:6493900-6493980 6.40e-01 80 chrV:5917875-5917955 3.41e-03 80 chrX:8386200-8386280 3.39e-01 80 chrIII:8307488-8307568 2.81e-03 80 chrIV:9074373-9074453 5.99e-03 34_[+1(8.88e-05)]_38 chrX:12367702-12367782 2.66e-02 80 chrII:8547099-8547179 2.05e-01 80 chrX:8156086-8156166 7.35e-01 80 chrIV:9316200-9316280 2.99e-05 20_[+5(9.15e-06)]_4_[+3(8.22e-05)]_\ 40 chrX:8646496-8646576 3.43e-03 80 chrII:11980278-11980358 4.69e-01 80 chrIII:9104262-9104342 8.24e-01 80 chrIV:9191345-9191425 2.37e-01 80 chrI:461698-461778 1.07e-03 45_[+1(4.78e-05)]_27 chrX:10435515-10435595 1.66e-02 80 chrII:10248526-10248606 2.38e-02 1_[+5(2.86e-05)]_71 chrIV:12724784-12724864 5.23e-01 80 chrIV:8016002-8016082 2.48e-02 51_[+3(2.42e-05)]_21 chrII:9940600-9940680 7.83e-02 80 chrV:11113325-11113405 1.26e-04 34_[+5(1.97e-05)]_38 chrV:12780441-12780521 4.54e-01 80 chrIV:8973682-8973762 2.45e-05 56_[+1(7.96e-06)]_16 chrIV:10483895-10483975 4.88e-02 14_[+2(2.42e-05)]_58 chrX:9637875-9637955 6.77e-01 80 chrIII:1604728-1604808 6.52e-02 30_[+2(5.05e-05)]_42 chrIII:10460725-10460805 5.36e-01 80 chrIII:9868278-9868358 1.16e-02 51_[+1(4.78e-05)]_21 chrIII:8106640-8106720 8.56e-01 80 chrIII:12351455-12351535 2.83e-01 80 chrIII:5555082-5555162 9.62e-05 32_[+1(8.88e-05)]_14_[+1(6.42e-05)]_\ 18 chrII:10033606-10033686 2.71e-01 80 chrIV:7947051-7947131 6.86e-01 80 chrI:2410138-2410218 1.34e-01 80 chrIII:4369488-4369568 4.40e-01 80 chrII:11746949-11747029 1.43e-01 80 chrIV:1388246-1388326 3.78e-02 26_[+2(5.05e-05)]_46 chrI:9988921-9989001 8.57e-01 80 chrX:14853988-14854068 3.15e-02 33_[+2(9.74e-05)]_39 chrII:9566197-9566277 5.82e-02 80 chrIII:4378754-4378834 7.42e-02 80 chrIII:7520788-7520868 2.47e-02 68_[+2(1.29e-05)]_4 chrIII:8887347-8887427 5.24e-02 80 chrI:11374404-11374484 6.98e-03 63_[+2(7.32e-05)]_9 chrII:14635280-14635360 8.29e-01 80 chrX:5708001-5708081 5.77e-01 80 chrX:4444282-4444362 1.20e-02 80 chrX:9999919-9999999 3.06e-01 80 chrII:3521514-3521594 1.59e-02 80 chrIV:143955-144035 1.25e-02 29_[+5(7.93e-05)]_43 chrIII:5308395-5308475 2.50e-02 80 chrII:8107302-8107382 5.47e-02 80 chrX:12563795-12563875 1.47e-02 80 chrI:1836642-1836722 4.03e-01 80 chrX:10555613-10555693 1.60e-03 80 chrIII:5211502-5211582 7.00e-01 80 chrIV:6206550-6206630 9.24e-03 24_[+2(1.29e-05)]_11_[+2(2.42e-05)]_\ 29 chrX:1319989-1320069 1.27e-01 80 chrII:10388219-10388299 1.53e-02 80 chrX:1858885-1858965 5.30e-01 80 chrX:16604649-16604729 7.76e-01 80 chrI:3873927-3874007 9.09e-08 13_[+5(9.15e-06)]_14_[+1(3.19e-05)]_\ 4_[+3(6.50e-05)]_8_[+4(8.64e-06)]_9 chrI:14737436-14737516 2.28e-02 43_[+3(6.50e-05)]_29 chrV:13468299-13468379 8.89e-03 72_[+2(1.29e-05)] chrI:2935723-2935803 2.61e-02 80 chrV:11610641-11610721 2.50e-04 6_[+3(6.50e-05)]_5_[+1(8.88e-05)]_\ 53 chrV:15085543-15085623 5.29e-02 47_[+2(1.29e-05)]_25 chrIII:5349420-5349500 2.95e-03 41_[+2(1.29e-05)]_31 chrI:8223177-8223257 3.65e-05 46_[+5(1.97e-05)]_26 chrIII:11371411-11371491 7.03e-03 55_[+2(2.42e-05)]_17 chrIII:11946520-11946600 7.01e-03 6_[+1(8.88e-05)]_66 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************