******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/aha-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:7661357-7661437 1.0000 80 chrII:8931567-8931647 1.0000 80 chrI:7581907-7581987 1.0000 80 chrII:8483915-8483995 1.0000 80 chrIV:14219815-14219895 1.0000 80 chrX:3022870-3022950 1.0000 80 chrX:11969699-11969779 1.0000 80 chrX:17627563-17627643 1.0000 80 chrIII:67222-67302 1.0000 80 chrII:9160384-9160464 1.0000 80 chrX:4142733-4142813 1.0000 80 chrIV:13396561-13396641 1.0000 80 chrI:13576487-13576567 1.0000 80 chrIII:3908382-3908462 1.0000 80 chrI:9315599-9315679 1.0000 80 chrX:3116383-3116463 1.0000 80 chrII:11724603-11724683 1.0000 80 chrII:8451596-8451676 1.0000 80 chrIII:10907876-10907956 1.0000 80 chrX:12454419-12454499 1.0000 80 chrII:12615572-12615652 1.0000 80 chrV:6247449-6247529 1.0000 80 chrX:3090211-3090291 1.0000 80 chrII:12040355-12040435 1.0000 80 chrV:3579338-3579418 1.0000 80 chrII:9170207-9170287 1.0000 80 chrV:6517336-6517416 1.0000 80 chrX:17631071-17631151 1.0000 80 chrIV:4026082-4026162 1.0000 80 chrX:6729175-6729255 1.0000 80 chrI:3682119-3682199 1.0000 80 chrII:13638612-13638692 1.0000 80 chrV:4131664-4131744 1.0000 80 chrX:5355462-5355542 1.0000 80 chrIV:5656109-5656189 1.0000 80 chrII:14244599-14244679 1.0000 80 chrIII:10905332-10905412 1.0000 80 chrX:8470489-8470569 1.0000 80 chrIV:828607-828687 1.0000 80 chrV:10468432-10468512 1.0000 80 chrII:9606741-9606821 1.0000 80 chrI:6569505-6569585 1.0000 80 chrII:4941774-4941854 1.0000 80 chrX:10051825-10051905 1.0000 80 chrV:3777155-3777235 1.0000 80 chrV:13082630-13082710 1.0000 80 chrI:13065889-13065969 1.0000 80 chrX:15079461-15079541 1.0000 80 chrX:11947305-11947385 1.0000 80 chrIV:9718466-9718546 1.0000 80 chrII:11050054-11050134 1.0000 80 chrIII:10717647-10717727 1.0000 80 chrI:10577167-10577247 1.0000 80 chrX:4142238-4142318 1.0000 80 chrV:10876644-10876724 1.0000 80 chrII:9171013-9171093 1.0000 80 chrX:1504966-1505046 1.0000 80 chrX:4139727-4139807 1.0000 80 chrV:3771578-3771658 1.0000 80 chrI:4644334-4644414 1.0000 80 chrI:14938248-14938328 1.0000 80 chrX:16131183-16131263 1.0000 80 chrX:16931555-16931635 1.0000 80 chrV:11824258-11824338 1.0000 80 chrII:8740436-8740516 1.0000 80 chrIV:11956465-11956545 1.0000 80 chrIII:13565025-13565105 1.0000 80 chrIV:13395328-13395408 1.0000 80 chrX:3106277-3106357 1.0000 80 chrV:13909557-13909637 1.0000 80 chrIV:8028494-8028574 1.0000 80 chrII:14044327-14044407 1.0000 80 chrI:7659185-7659265 1.0000 80 chrX:6740744-6740824 1.0000 80 chrI:7472894-7472974 1.0000 80 chrI:2591584-2591664 1.0000 80 chrI:3867347-3867427 1.0000 80 chrII:11756933-11757013 1.0000 80 chrIV:9535202-9535282 1.0000 80 chrV:7093971-7094051 1.0000 80 chrII:8485800-8485880 1.0000 80 chrV:10174707-10174787 1.0000 80 chrX:3787515-3787595 1.0000 80 chrX:864541-864621 1.0000 80 chrIV:3636616-3636696 1.0000 80 chrIV:11225341-11225421 1.0000 80 chrIII:7643246-7643326 1.0000 80 chrX:8546163-8546243 1.0000 80 chrV:5576162-5576242 1.0000 80 chrX:7234732-7234812 1.0000 80 chrIII:10904281-10904361 1.0000 80 chrIV:10919323-10919403 1.0000 80 chrIII:4015416-4015496 1.0000 80 chrX:13358737-13358817 1.0000 80 chrV:20712948-20713028 1.0000 80 chrX:1620977-1621057 1.0000 80 chrV:11572963-11573043 1.0000 80 chrX:2971631-2971711 1.0000 80 chrX:7952418-7952498 1.0000 80 chrX:2939256-2939336 1.0000 80 chrX:17451549-17451629 1.0000 80 chrI:14769054-14769134 1.0000 80 chrII:10559024-10559104 1.0000 80 chrI:9097731-9097811 1.0000 80 chrX:15274214-15274294 1.0000 80 chrV:1433857-1433937 1.0000 80 chrV:6515206-6515286 1.0000 80 chrIII:6375147-6375227 1.0000 80 chrV:7980613-7980693 1.0000 80 chrX:14561570-14561650 1.0000 80 chrX:915634-915714 1.0000 80 chrV:9343285-9343365 1.0000 80 chrV:1434505-1434585 1.0000 80 chrI:4647214-4647294 1.0000 80 chrX:13356566-13356646 1.0000 80 chrX:17628449-17628529 1.0000 80 chrIV:9676699-9676779 1.0000 80 chrI:2628726-2628806 1.0000 80 chrIV:4216270-4216350 1.0000 80 chrV:6240068-6240148 1.0000 80 chrIV:4020004-4020084 1.0000 80 chrV:8653565-8653645 1.0000 80 chrV:13658796-13658876 1.0000 80 chrIII:7376578-7376658 1.0000 80 chrIV:4406021-4406101 1.0000 80 chrI:6611314-6611394 1.0000 80 chrIII:7499632-7499712 1.0000 80 chrX:17135820-17135900 1.0000 80 chrX:8422126-8422206 1.0000 80 chrII:5337000-5337080 1.0000 80 chrII:12878878-12878958 1.0000 80 chrIII:6897783-6897863 1.0000 80 chrX:1909522-1909602 1.0000 80 chrI:3806623-3806703 1.0000 80 chrX:3694300-3694380 1.0000 80 chrIV:6809895-6809975 1.0000 80 chrII:9937785-9937865 1.0000 80 chrIII:5845601-5845681 1.0000 80 chrX:15365348-15365428 1.0000 80 chrI:10518076-10518156 1.0000 80 chrIII:9766401-9766481 1.0000 80 chrIII:13465275-13465355 1.0000 80 chrX:8368324-8368404 1.0000 80 chrI:7082172-7082252 1.0000 80 chrIII:4693449-4693529 1.0000 80 chrV:10715935-10716015 1.0000 80 chrV:13656607-13656687 1.0000 80 chrX:13250289-13250369 1.0000 80 chrII:9284202-9284282 1.0000 80 chrIV:2708795-2708875 1.0000 80 chrII:14296415-14296495 1.0000 80 chrX:4190717-4190797 1.0000 80 chrI:7492057-7492137 1.0000 80 chrX:15492896-15492976 1.0000 80 chrIV:8527708-8527788 1.0000 80 chrIV:957955-958035 1.0000 80 chrX:10637562-10637642 1.0000 80 chrI:7563167-7563247 1.0000 80 chrX:6750340-6750420 1.0000 80 chrX:14589265-14589345 1.0000 80 chrV:5271594-5271674 1.0000 80 chrIII:5506387-5506467 1.0000 80 chrV:3717968-3718048 1.0000 80 chrII:13462165-13462245 1.0000 80 chrIII:4193750-4193830 1.0000 80 chrX:6736580-6736660 1.0000 80 chrV:13657508-13657588 1.0000 80 chrX:6737755-6737835 1.0000 80 chrIII:4494688-4494768 1.0000 80 chrII:6849514-6849594 1.0000 80 chrX:4524109-4524189 1.0000 80 chrX:17633308-17633388 1.0000 80 chrIII:1080715-1080795 1.0000 80 chrX:12018110-12018190 1.0000 80 chrV:6246692-6246772 1.0000 80 chrX:6254439-6254519 1.0000 80 chrX:877127-877207 1.0000 80 chrII:221356-221436 1.0000 80 chrV:15566744-15566824 1.0000 80 chrIII:7208052-7208132 1.0000 80 chrI:10927518-10927598 1.0000 80 chrI:10562561-10562641 1.0000 80 chrX:8811099-8811179 1.0000 80 chrX:14753641-14753721 1.0000 80 chrII:7528393-7528473 1.0000 80 chrX:8021790-8021870 1.0000 80 chrIII:8425243-8425323 1.0000 80 chrI:9343940-9344020 1.0000 80 chrV:6100777-6100857 1.0000 80 chrIII:10334146-10334226 1.0000 80 chrX:3788740-3788820 1.0000 80 chrX:15040888-15040968 1.0000 80 chrV:10466742-10466822 1.0000 80 chrX:2071512-2071592 1.0000 80 chrII:6061646-6061726 1.0000 80 chrV:19622594-19622674 1.0000 80 chrII:11746878-11746958 1.0000 80 chrIII:6447762-6447842 1.0000 80 chrX:2598852-2598932 1.0000 80 chrV:3315496-3315576 1.0000 80 chrIII:9052671-9052751 1.0000 80 chrII:6888471-6888551 1.0000 80 chrII:11874814-11874894 1.0000 80 chrIV:443851-443931 1.0000 80 chrX:16024674-16024754 1.0000 80 chrII:18952-19032 1.0000 80 chrII:14399727-14399807 1.0000 80 chrX:16796999-16797079 1.0000 80 chrI:10553872-10553952 1.0000 80 chrII:8787571-8787651 1.0000 80 chrI:8133801-8133881 1.0000 80 chrV:5684704-5684784 1.0000 80 chrI:9380325-9380405 1.0000 80 chrI:10026052-10026132 1.0000 80 chrIV:11809758-11809838 1.0000 80 chrX:6742199-6742279 1.0000 80 chrX:14560326-14560406 1.0000 80 chrI:7656784-7656864 1.0000 80 chrIV:1420274-1420354 1.0000 80 chrIV:13322687-13322767 1.0000 80 chrX:11299724-11299804 1.0000 80 chrX:7068517-7068597 1.0000 80 chrI:9113187-9113267 1.0000 80 chrIV:4445889-4445969 1.0000 80 chrX:11207138-11207218 1.0000 80 chrII:10549021-10549101 1.0000 80 chrII:6565246-6565326 1.0000 80 chrV:6229507-6229587 1.0000 80 chrX:1446919-1446999 1.0000 80 chrV:10965646-10965726 1.0000 80 chrIV:10252511-10252591 1.0000 80 chrI:13547345-13547425 1.0000 80 chrIII:6421088-6421168 1.0000 80 chrI:8816546-8816626 1.0000 80 chrIII:8904270-8904350 1.0000 80 chrIII:11823465-11823545 1.0000 80 chrI:3825-3905 1.0000 80 chrI:6835417-6835497 1.0000 80 chrIV:10936269-10936349 1.0000 80 chrX:15354079-15354159 1.0000 80 chrIII:4195355-4195435 1.0000 80 chrIV:10935521-10935601 1.0000 80 chrV:14696957-14697037 1.0000 80 chrI:8426862-8426942 1.0000 80 chrI:13337254-13337334 1.0000 80 chrIV:15471567-15471647 1.0000 80 chrIII:11066933-11067013 1.0000 80 chrX:2242959-2243039 1.0000 80 chrIII:793687-793767 1.0000 80 chrIV:14464234-14464314 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_aha-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/aha-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.261 C 0.242 G 0.241 T 0.256 Background letter frequencies (from file dataset with add-one prior applied): A 0.261 C 0.242 G 0.241 T 0.256 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TCTCTCKY MEME-1 width = 8 sites = 73 llr = 539 E-value = 8.1e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTCTCKY MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::31:: pos.-specific C 16:a:9:5 probability G :3::::4: matrix T 91a:7:65 bits 2.1 ** 1.8 ** 1.6 ** 1.4 * ** * Relative 1.2 * ** * Entropy 1.0 * ****** (10.6 bits) 0.8 * ****** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCTCTCTC consensus G A GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCKY MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:10252511-10252591 34 1.47e-05 tctctctctc tctctctc tctcttctct chrIII:4193750-4193830 47 1.47e-05 ATGTCTCATT TCTCTCTC CGTCACACGT chrI:7492057-7492137 7 1.47e-05 CATGTC TCTCTCTC TCACTTGTTG chrX:14561570-14561650 24 1.47e-05 TTTCTCTCTC TCTCTCTC CATTTCCTTT chrI:13065889-13065969 26 1.47e-05 GCGCTCTCTT TCTCTCTC TTTCTGTTGC chrX:7661357-7661437 2 1.47e-05 C TCTCTCTC TTTGCCCATT chrX:2242959-2243039 71 4.42e-05 AATGCCAACA TCTCTCGC GT chrIV:10935521-10935601 16 4.42e-05 TTCCTCATGC TCTCTCGC TGAAACGCAT chrX:8811099-8811179 60 4.42e-05 TTTCACACAC TCTCTCGC CAATGCCCTA chrI:10927518-10927598 19 4.42e-05 TTGTCGGGGG TCTCTCTT CCGCAACATC chrX:8422126-8422206 61 4.42e-05 GCAGCCGACC TCTCTCGC GTCTCTACAG chrI:3867347-3867427 13 4.42e-05 AAATGCGCGG TCTCTCGC TCGATCTCTC chrI:7659185-7659265 31 4.42e-05 TGACCCCGCC TCTCTCTT GTACACACGT chrV:13082630-13082710 35 4.42e-05 AAACCGATGt tctctctt catttcgttt chrV:3777155-3777235 15 4.42e-05 CTTGCACATG TCTCTCGC GGTGAACGTG chrII:4941774-4941854 54 4.42e-05 GTACTCCGCA TCTCTCTT GTCATGGGTG chrIII:10905332-10905412 48 4.42e-05 ttccccacac tctctcgc ttctctTTTC chrIV:4445889-4445969 51 5.89e-05 AAAGGAGGAG TCTCTCGT TTGCGCGCGC chrII:221356-221436 51 5.89e-05 TTATATTTCG TCTCTCGT GTGTTCCCTC chrI:9097731-9097811 2 5.89e-05 a tctctcgt ctctGACGAC chrX:17451549-17451629 17 5.89e-05 TACTTCGCAG TCTCTCGT GCACTAACAC chrX:3106277-3106357 51 5.89e-05 TCCCATGTCT TCTCTCGT GAGTGAAAAC chrV:3315496-3315576 41 7.35e-05 TCACACTCCG TGTCTCTC TGACCAGTTG chrX:877127-877207 47 7.35e-05 ACTCACGTAG TGTCTCTC TGTCCTCTCC chrX:6736580-6736660 36 7.35e-05 TCGGACGATG TGTCTCTC ATTGTCCTTT chrIV:4406021-4406101 72 7.35e-05 TGACGTTGTT TGtctctc t chrV:14696957-14697037 14 8.85e-05 ccgcttcttt tctcactc tctatctctc chrII:6888471-6888551 34 8.85e-05 AAGTTGTTTG TCTCACTC ACAGCTCGAA chrI:10562561-10562641 3 8.85e-05 CT TCTCACTC CACCTGCGTC chrIII:9766401-9766481 48 8.85e-05 CCGATGTTCT TCTCACTC TTCCTCCTCC chrV:20712948-20713028 30 8.85e-05 CTTTTAGGCT TCTCACTC GGGCACCACG chrX:15365348-15365428 71 1.18e-04 CTTCCTCAGC TGTCTCGC CG chrI:6611314-6611394 44 1.18e-04 GCCTCCTCTG TGTCTCTT ACAGAAATAG chrX:3787515-3787595 14 1.18e-04 TATGACTTGT TGTCTCTT CTTTTTCGTC chrI:7563167-7563247 6 1.48e-04 TCCAC TCTCACTT TCTGACTCTT chrX:2971631-2971711 55 1.48e-04 GCTCTCACAC TCTCACGC GTTGCCTCAA chrII:11724603-11724683 3 1.48e-04 TC TCTCACTT TCGCCTGCTC chrI:10577167-10577247 7 1.77e-04 CATAAT TCTCACGT AATCTGCCTC chrX:6254439-6254519 3 2.08e-04 CA TGTCACTC GATCGATTTG chrX:2598852-2598932 47 2.69e-04 TTTCCCCCCG TTTCTCTT TCTCCCGTCT chrV:6246692-6246772 54 2.69e-04 GCCGCCTCGT TTTCTCTT GCGTCTCGTG chrV:13657508-13657588 11 2.69e-04 ACATTTCACT TTTCTCTT TTTTATCACG chrII:9284202-9284282 4 2.69e-04 TCA TTTCTCTT ATCAAAAGGG chrIV:11225341-11225421 72 2.69e-04 CGATCAAGTT TTTCTCTT T chrX:4142238-4142318 55 2.69e-04 CAATACAAAA TGTCACGC GATGTTTCCA chrX:3090211-3090291 56 2.69e-04 ATCTTCTAAA TGTCACGC ACACAGCAAA chrX:17627563-17627643 11 2.69e-04 CCCACTTACA TTTCTCGC CCATCTAACT chrI:13576487-13576567 20 2.83e-04 CTTCTCTGCT CCTCTCTC ATCCCCCCGT chrV:8653565-8653645 30 3.13e-04 TCTTGCAGAA TGTCACGT AGATCAAGCC chrIV:8028494-8028574 21 3.13e-04 GCGCGCATCT TGTCACGT GCCTCTTCAC chrV:6517336-6517416 22 3.13e-04 AGTTGTTGTT TGTCACGT AAACTGCCGA chrIV:13396561-13396641 40 3.13e-04 CACACAGTAC TGTCACGT AAGAGACTCC chrX:6742199-6742279 48 3.41e-04 ACACACACTA CCTCTCGC CGTCTGCCGC chrI:8133801-8133881 11 3.57e-04 CGTCTCTGCG TCTCTATC TCTTCGCATC chrIII:3908382-3908462 61 3.57e-04 TCTAGTCACT TCTCTATC TTTCTTTTTT chrIV:3636616-3636696 56 3.71e-04 TGTCGCCGCT CCTCTCGT CCGTCGCTGC chrV:3771578-3771658 12 4.19e-04 AACTAATCAA TCTCTAGC AAATGACCAC chrII:9606741-9606821 35 4.19e-04 TCTCGCAGTC TCTCTAGC TATTTTCAGT chrIV:5656109-5656189 40 4.19e-04 GTACACCGTT TTTCACTC ACTACAGACT chrX:13356566-13356646 68 4.80e-04 ATCCCTCTTA TCTCTAGT TTAGA chrV:5576162-5576242 55 4.80e-04 CTACTAAAGT TTTCACTT CGGTCCGGAG chrI:8426862-8426942 70 5.38e-04 TAGGTGCCTG CGTCTCTT CAT chrI:9113187-9113267 35 5.38e-04 CACGGCTCTG CGTCTCTT CAGTAGCTCT chrV:19622594-19622674 72 5.38e-04 GCAACTTCTC CGTCTCTT T chrII:14296415-14296495 18 5.38e-04 TCGTCAAAAC TTTCACGT ATTTTCCAGG chrV:10715935-10716015 6 5.38e-04 GCGCT CGTCTCGC GCGCACGTGA chrIII:10717647-10717727 63 5.38e-04 CTTTTGTATT TTTCACGT AGACGCAAAC chrII:8485800-8485880 5 5.82e-04 AACG TGTCTATC TACCATTGTA chrII:8931567-8931647 61 5.82e-04 GTCCTTGGCC CCTCACTT GTTTTCGAGC chrX:2939256-2939336 3 6.12e-04 CT TCTCAATC CAAAATGCGT chrII:8451596-8451676 42 6.12e-04 GTGCATGCAT CGTCTCGT TCGGCACGTA chrI:6569505-6569585 22 6.90e-04 AGAAAACGTT TCTCAATT TTATTCTCAT chrI:7082172-7082252 3 1.04e-03 CA TCTCTGTC GCCACTACCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCKY MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:10252511-10252591 1.5e-05 33_[+1]_39 chrIII:4193750-4193830 1.5e-05 46_[+1]_26 chrI:7492057-7492137 1.5e-05 6_[+1]_66 chrX:14561570-14561650 1.5e-05 23_[+1]_49 chrI:13065889-13065969 1.5e-05 25_[+1]_47 chrX:7661357-7661437 1.5e-05 1_[+1]_71 chrX:2242959-2243039 4.4e-05 70_[+1]_2 chrIV:10935521-10935601 4.4e-05 15_[+1]_57 chrX:8811099-8811179 4.4e-05 59_[+1]_13 chrI:10927518-10927598 4.4e-05 18_[+1]_54 chrX:8422126-8422206 4.4e-05 60_[+1]_12 chrI:3867347-3867427 4.4e-05 12_[+1]_60 chrI:7659185-7659265 4.4e-05 30_[+1]_42 chrV:13082630-13082710 4.4e-05 34_[+1]_38 chrV:3777155-3777235 4.4e-05 14_[+1]_58 chrII:4941774-4941854 4.4e-05 53_[+1]_19 chrIII:10905332-10905412 4.4e-05 47_[+1]_25 chrIV:4445889-4445969 5.9e-05 50_[+1]_22 chrII:221356-221436 5.9e-05 50_[+1]_22 chrI:9097731-9097811 5.9e-05 1_[+1]_71 chrX:17451549-17451629 5.9e-05 16_[+1]_56 chrX:3106277-3106357 5.9e-05 50_[+1]_22 chrV:3315496-3315576 7.4e-05 40_[+1]_32 chrX:877127-877207 7.4e-05 46_[+1]_26 chrX:6736580-6736660 7.4e-05 35_[+1]_37 chrIV:4406021-4406101 7.4e-05 71_[+1]_1 chrV:14696957-14697037 8.9e-05 13_[+1]_59 chrII:6888471-6888551 8.9e-05 33_[+1]_39 chrI:10562561-10562641 8.9e-05 2_[+1]_70 chrIII:9766401-9766481 8.9e-05 47_[+1]_25 chrV:20712948-20713028 8.9e-05 29_[+1]_43 chrX:15365348-15365428 0.00012 70_[+1]_2 chrI:6611314-6611394 0.00012 43_[+1]_29 chrX:3787515-3787595 0.00012 13_[+1]_59 chrI:7563167-7563247 0.00015 5_[+1]_67 chrX:2971631-2971711 0.00015 54_[+1]_18 chrII:11724603-11724683 0.00015 2_[+1]_70 chrI:10577167-10577247 0.00018 6_[+1]_66 chrX:6254439-6254519 0.00021 2_[+1]_70 chrX:2598852-2598932 0.00027 46_[+1]_26 chrV:6246692-6246772 0.00027 53_[+1]_19 chrV:13657508-13657588 0.00027 10_[+1]_62 chrII:9284202-9284282 0.00027 3_[+1]_69 chrIV:11225341-11225421 0.00027 71_[+1]_1 chrX:4142238-4142318 0.00027 54_[+1]_18 chrX:3090211-3090291 0.00027 55_[+1]_17 chrX:17627563-17627643 0.00027 10_[+1]_62 chrI:13576487-13576567 0.00028 19_[+1]_53 chrV:8653565-8653645 0.00031 29_[+1]_43 chrIV:8028494-8028574 0.00031 20_[+1]_52 chrV:6517336-6517416 0.00031 21_[+1]_51 chrIV:13396561-13396641 0.00031 39_[+1]_33 chrX:6742199-6742279 0.00034 47_[+1]_25 chrI:8133801-8133881 0.00036 10_[+1]_62 chrIII:3908382-3908462 0.00036 60_[+1]_12 chrIV:3636616-3636696 0.00037 55_[+1]_17 chrV:3771578-3771658 0.00042 11_[+1]_61 chrII:9606741-9606821 0.00042 34_[+1]_38 chrIV:5656109-5656189 0.00042 39_[+1]_33 chrX:13356566-13356646 0.00048 67_[+1]_5 chrV:5576162-5576242 0.00048 54_[+1]_18 chrI:8426862-8426942 0.00054 69_[+1]_3 chrI:9113187-9113267 0.00054 34_[+1]_38 chrV:19622594-19622674 0.00054 71_[+1]_1 chrII:14296415-14296495 0.00054 17_[+1]_55 chrV:10715935-10716015 0.00054 5_[+1]_67 chrIII:10717647-10717727 0.00054 62_[+1]_10 chrII:8485800-8485880 0.00058 4_[+1]_68 chrII:8931567-8931647 0.00058 60_[+1]_12 chrX:2939256-2939336 0.00061 2_[+1]_70 chrII:8451596-8451676 0.00061 41_[+1]_31 chrI:6569505-6569585 0.00069 21_[+1]_51 chrI:7082172-7082252 0.001 2_[+1]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCKY MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTCTCKY width=8 seqs=73 chrIV:10252511-10252591 ( 34) TCTCTCTC 1 chrIII:4193750-4193830 ( 47) TCTCTCTC 1 chrI:7492057-7492137 ( 7) TCTCTCTC 1 chrX:14561570-14561650 ( 24) TCTCTCTC 1 chrI:13065889-13065969 ( 26) TCTCTCTC 1 chrX:7661357-7661437 ( 2) TCTCTCTC 1 chrX:2242959-2243039 ( 71) TCTCTCGC 1 chrIV:10935521-10935601 ( 16) TCTCTCGC 1 chrX:8811099-8811179 ( 60) TCTCTCGC 1 chrI:10927518-10927598 ( 19) TCTCTCTT 1 chrX:8422126-8422206 ( 61) TCTCTCGC 1 chrI:3867347-3867427 ( 13) TCTCTCGC 1 chrI:7659185-7659265 ( 31) TCTCTCTT 1 chrV:13082630-13082710 ( 35) TCTCTCTT 1 chrV:3777155-3777235 ( 15) TCTCTCGC 1 chrII:4941774-4941854 ( 54) TCTCTCTT 1 chrIII:10905332-10905412 ( 48) TCTCTCGC 1 chrIV:4445889-4445969 ( 51) TCTCTCGT 1 chrII:221356-221436 ( 51) TCTCTCGT 1 chrI:9097731-9097811 ( 2) TCTCTCGT 1 chrX:17451549-17451629 ( 17) TCTCTCGT 1 chrX:3106277-3106357 ( 51) TCTCTCGT 1 chrV:3315496-3315576 ( 41) TGTCTCTC 1 chrX:877127-877207 ( 47) TGTCTCTC 1 chrX:6736580-6736660 ( 36) TGTCTCTC 1 chrIV:4406021-4406101 ( 72) TGTCTCTC 1 chrV:14696957-14697037 ( 14) TCTCACTC 1 chrII:6888471-6888551 ( 34) TCTCACTC 1 chrI:10562561-10562641 ( 3) TCTCACTC 1 chrIII:9766401-9766481 ( 48) TCTCACTC 1 chrV:20712948-20713028 ( 30) TCTCACTC 1 chrX:15365348-15365428 ( 71) TGTCTCGC 1 chrI:6611314-6611394 ( 44) TGTCTCTT 1 chrX:3787515-3787595 ( 14) TGTCTCTT 1 chrI:7563167-7563247 ( 6) TCTCACTT 1 chrX:2971631-2971711 ( 55) TCTCACGC 1 chrII:11724603-11724683 ( 3) TCTCACTT 1 chrI:10577167-10577247 ( 7) TCTCACGT 1 chrX:6254439-6254519 ( 3) TGTCACTC 1 chrX:2598852-2598932 ( 47) TTTCTCTT 1 chrV:6246692-6246772 ( 54) TTTCTCTT 1 chrV:13657508-13657588 ( 11) TTTCTCTT 1 chrII:9284202-9284282 ( 4) TTTCTCTT 1 chrIV:11225341-11225421 ( 72) TTTCTCTT 1 chrX:4142238-4142318 ( 55) TGTCACGC 1 chrX:3090211-3090291 ( 56) TGTCACGC 1 chrX:17627563-17627643 ( 11) TTTCTCGC 1 chrI:13576487-13576567 ( 20) CCTCTCTC 1 chrV:8653565-8653645 ( 30) TGTCACGT 1 chrIV:8028494-8028574 ( 21) TGTCACGT 1 chrV:6517336-6517416 ( 22) TGTCACGT 1 chrIV:13396561-13396641 ( 40) TGTCACGT 1 chrX:6742199-6742279 ( 48) CCTCTCGC 1 chrI:8133801-8133881 ( 11) TCTCTATC 1 chrIII:3908382-3908462 ( 61) TCTCTATC 1 chrIV:3636616-3636696 ( 56) CCTCTCGT 1 chrV:3771578-3771658 ( 12) TCTCTAGC 1 chrII:9606741-9606821 ( 35) TCTCTAGC 1 chrIV:5656109-5656189 ( 40) TTTCACTC 1 chrX:13356566-13356646 ( 68) TCTCTAGT 1 chrV:5576162-5576242 ( 55) TTTCACTT 1 chrI:8426862-8426942 ( 70) CGTCTCTT 1 chrI:9113187-9113267 ( 35) CGTCTCTT 1 chrV:19622594-19622674 ( 72) CGTCTCTT 1 chrII:14296415-14296495 ( 18) TTTCACGT 1 chrV:10715935-10716015 ( 6) CGTCTCGC 1 chrIII:10717647-10717727 ( 63) TTTCACGT 1 chrII:8485800-8485880 ( 5) TGTCTATC 1 chrII:8931567-8931647 ( 61) CCTCACTT 1 chrX:2939256-2939336 ( 3) TCTCAATC 1 chrII:8451596-8451676 ( 42) CGTCTCGT 1 chrI:6569505-6569585 ( 22) TCTCAATT 1 chrI:7082172-7082252 ( 3) TCTCTGTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCKY MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.76163 E= 8.1e-014 -1283 -97 -1283 177 -1283 128 19 -90 -1283 -1283 -1283 196 -1283 205 -1283 -1283 27 -1283 -1283 142 -125 186 -413 -1283 -1283 -1283 82 117 -1283 114 -1283 86 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCKY MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 73 E= 8.1e-014 0.000000 0.123288 0.000000 0.876712 0.000000 0.589041 0.273973 0.136986 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.315068 0.000000 0.000000 0.684932 0.109589 0.876712 0.013699 0.000000 0.000000 0.000000 0.424658 0.575342 0.000000 0.534247 0.000000 0.465753 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTCKY MEME-1 regular expression -------------------------------------------------------------------------------- T[CG]TC[TA]C[TG][CT] -------------------------------------------------------------------------------- Time 5.07 secs. ******************************************************************************** ******************************************************************************** MOTIF RAGAGAGA MEME-2 width = 8 sites = 42 llr = 347 E-value = 1.0e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAGAGAGA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 4a3a:a28 pos.-specific C 2::::::2 probability G 4:7:a:8: matrix T :::::::: bits 2.1 1.8 * *** 1.6 * *** 1.4 * *** Relative 1.2 ******* Entropy 1.0 ******* (11.9 bits) 0.8 ******* 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAGAGAGA consensus G A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGAGAGA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:11809758-11809838 72 1.70e-05 GTTGTagaga aagagaga g chrII:11746878-11746958 69 1.70e-05 GCTTGCGCAG AAGAGAGA CTGC chrIV:3636616-3636696 25 1.70e-05 acgcgagaga aagagaga agagggagCC chrX:11947305-11947385 47 1.70e-05 GGAGAGGGAG AAGAGAGA ATGTAGTGAC chrV:14696957-14697037 72 3.26e-05 ATGAGAGAGC GAGAGAGA G chrX:15354079-15354159 37 3.26e-05 gagagagagt gagagaga aagaaagcga chrIV:13322687-13322767 60 3.26e-05 GAACTGGTga gagagaga aagagggaag chrX:16024674-16024754 72 3.26e-05 ATAAGATGCA GAGAGAGA G chrV:3717968-3718048 73 3.26e-05 TGACGTGCTA GAGAGAGA chrII:5337000-5337080 21 3.26e-05 GATGGTGGGG GAGAGAGA TCGAGAGATG chrIV:4020004-4020084 11 3.26e-05 gaatgagcga gagagaga gaggggagaC chrI:7659185-7659265 70 3.26e-05 CGTGTCGATT GAGAGAGA AGG chrII:14244599-14244679 40 3.26e-05 GAGAGAGTGA GAGAGAGA ATCCACACGG chrII:12040355-12040435 44 3.26e-05 TGAAGAGACG GAGAGAGA AGGCGCAGTC chrII:12878878-12878958 50 4.83e-05 AGAAGAAGCC CAGAGAGA AACAGCTTGA chrII:10559024-10559104 14 4.83e-05 GAGGCATGCA CAGAGAGA TTGCAAATTG chrIII:7643246-7643326 5 4.83e-05 AGAG CAGAGAGA GTAGACGGTT chrV:6517336-6517416 71 4.83e-05 ACGAGGTCAT CAGAGAGA AG chrV:6229507-6229587 19 6.67e-05 GTATCTTTAG AAAAGAGA GGAGCTGGTG chrIII:1080715-1080795 2 6.67e-05 G AAAAGAGA GCGATGGAGC chrI:9097731-9097811 70 6.67e-05 TTTCAGATTG AAAAGAGA GGA chrX:2971631-2971711 17 6.67e-05 CGTGCCTGGA AAAAGAGA CGTCAACTCA chrIV:11225341-11225421 18 6.67e-05 GACAAAAGAA AAAAGAGA GGGACGGAGG chrV:11824258-11824338 28 6.67e-05 CTGCTGTATG AAAAGAGA GGAGGGGTAA chrX:14753641-14753721 41 1.18e-04 GGCACGTTGG AAGAGAGC GAGAACGGAC chrX:6254439-6254519 55 1.18e-04 GACAAAAGAG AAGAGAAA CAAGACGAAA chrX:4190717-4190797 57 1.18e-04 AAGAAACGGC AAGAGAGC GCACGCAGAC chrI:3867347-3867427 54 1.18e-04 TCCAGTGTAA AAGAGAAA GGCGAGCAAC chrI:8426862-8426942 5 1.49e-04 AAAC GAGAGAGC ACACATTTTG chrV:7093971-7094051 35 1.49e-04 GAAAGTGATG GAGAGAAA GAACACGTGA chrIII:13565025-13565105 43 1.49e-04 AGCCCCTGGC GAGAGAGC AAGAGTGTGT chrX:6729175-6729255 55 1.49e-04 CGCGTACGAC GAGAGAAA TGTTCAAAAA chrI:9380325-9380405 64 1.98e-04 ACGAGACTAT CAGAGAGC ACAAAGGCT chrV:3315496-3315576 66 1.98e-04 TTGAGAGCCG CAGAGAAA AAAGGGA chrX:16131183-16131263 42 1.98e-04 GCACGTTTCC CAGAGAAA CACGAGGAGT chrX:7661357-7661437 62 1.98e-04 CACACACACG CAGAGAAA CCGAGAAAAT chrI:13547345-13547425 57 2.35e-04 GCCTTCCAAA AAAAGAGC ACTAGCGCCA chrV:10876644-10876724 1 2.35e-04 . AAAAGAGC AAACGTGACG chrI:9315599-9315679 55 2.35e-04 TTATGGAACA AAAAGAAA GTTATGAAAG chrX:3022870-3022950 34 2.35e-04 TCGTTTGGCG AAAAGAGC ACCAGCTGCA chrII:9170207-9170287 47 2.69e-04 GTGAAAAGGT GAAAGAAA AAGGATTGAC chrI:9343940-9344020 23 4.22e-04 CAGATGGTTA GAGAAAGA GTGAAAACTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGAGAGA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:11809758-11809838 1.7e-05 71_[+2]_1 chrII:11746878-11746958 1.7e-05 68_[+2]_4 chrIV:3636616-3636696 1.7e-05 24_[+2]_48 chrX:11947305-11947385 1.7e-05 46_[+2]_26 chrV:14696957-14697037 3.3e-05 71_[+2]_1 chrX:15354079-15354159 3.3e-05 36_[+2]_36 chrIV:13322687-13322767 3.3e-05 59_[+2]_13 chrX:16024674-16024754 3.3e-05 71_[+2]_1 chrV:3717968-3718048 3.3e-05 72_[+2] chrII:5337000-5337080 3.3e-05 20_[+2]_52 chrIV:4020004-4020084 3.3e-05 10_[+2]_62 chrI:7659185-7659265 3.3e-05 69_[+2]_3 chrII:14244599-14244679 3.3e-05 39_[+2]_33 chrII:12040355-12040435 3.3e-05 43_[+2]_29 chrII:12878878-12878958 4.8e-05 49_[+2]_23 chrII:10559024-10559104 4.8e-05 13_[+2]_59 chrIII:7643246-7643326 4.8e-05 4_[+2]_68 chrV:6517336-6517416 4.8e-05 70_[+2]_2 chrV:6229507-6229587 6.7e-05 18_[+2]_54 chrIII:1080715-1080795 6.7e-05 1_[+2]_71 chrI:9097731-9097811 6.7e-05 69_[+2]_3 chrX:2971631-2971711 6.7e-05 16_[+2]_56 chrIV:11225341-11225421 6.7e-05 17_[+2]_55 chrV:11824258-11824338 6.7e-05 27_[+2]_45 chrX:14753641-14753721 0.00012 40_[+2]_32 chrX:6254439-6254519 0.00012 54_[+2]_18 chrX:4190717-4190797 0.00012 56_[+2]_16 chrI:3867347-3867427 0.00012 53_[+2]_19 chrI:8426862-8426942 0.00015 4_[+2]_68 chrV:7093971-7094051 0.00015 34_[+2]_38 chrIII:13565025-13565105 0.00015 42_[+2]_30 chrX:6729175-6729255 0.00015 54_[+2]_18 chrI:9380325-9380405 0.0002 63_[+2]_9 chrV:3315496-3315576 0.0002 65_[+2]_7 chrX:16131183-16131263 0.0002 41_[+2]_31 chrX:7661357-7661437 0.0002 61_[+2]_11 chrI:13547345-13547425 0.00023 56_[+2]_16 chrV:10876644-10876724 0.00023 [+2]_72 chrI:9315599-9315679 0.00023 54_[+2]_18 chrX:3022870-3022950 0.00023 33_[+2]_39 chrII:9170207-9170287 0.00027 46_[+2]_26 chrI:9343940-9344020 0.00042 22_[+2]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGAGAGA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAGAGAGA width=8 seqs=42 chrIV:11809758-11809838 ( 72) AAGAGAGA 1 chrII:11746878-11746958 ( 69) AAGAGAGA 1 chrIV:3636616-3636696 ( 25) AAGAGAGA 1 chrX:11947305-11947385 ( 47) AAGAGAGA 1 chrV:14696957-14697037 ( 72) GAGAGAGA 1 chrX:15354079-15354159 ( 37) GAGAGAGA 1 chrIV:13322687-13322767 ( 60) GAGAGAGA 1 chrX:16024674-16024754 ( 72) GAGAGAGA 1 chrV:3717968-3718048 ( 73) GAGAGAGA 1 chrII:5337000-5337080 ( 21) GAGAGAGA 1 chrIV:4020004-4020084 ( 11) GAGAGAGA 1 chrI:7659185-7659265 ( 70) GAGAGAGA 1 chrII:14244599-14244679 ( 40) GAGAGAGA 1 chrII:12040355-12040435 ( 44) GAGAGAGA 1 chrII:12878878-12878958 ( 50) CAGAGAGA 1 chrII:10559024-10559104 ( 14) CAGAGAGA 1 chrIII:7643246-7643326 ( 5) CAGAGAGA 1 chrV:6517336-6517416 ( 71) CAGAGAGA 1 chrV:6229507-6229587 ( 19) AAAAGAGA 1 chrIII:1080715-1080795 ( 2) AAAAGAGA 1 chrI:9097731-9097811 ( 70) AAAAGAGA 1 chrX:2971631-2971711 ( 17) AAAAGAGA 1 chrIV:11225341-11225421 ( 18) AAAAGAGA 1 chrV:11824258-11824338 ( 28) AAAAGAGA 1 chrX:14753641-14753721 ( 41) AAGAGAGC 1 chrX:6254439-6254519 ( 55) AAGAGAAA 1 chrX:4190717-4190797 ( 57) AAGAGAGC 1 chrI:3867347-3867427 ( 54) AAGAGAAA 1 chrI:8426862-8426942 ( 5) GAGAGAGC 1 chrV:7093971-7094051 ( 35) GAGAGAAA 1 chrIII:13565025-13565105 ( 43) GAGAGAGC 1 chrX:6729175-6729255 ( 55) GAGAGAAA 1 chrI:9380325-9380405 ( 64) CAGAGAGC 1 chrV:3315496-3315576 ( 66) CAGAGAAA 1 chrX:16131183-16131263 ( 42) CAGAGAAA 1 chrX:7661357-7661437 ( 62) CAGAGAAA 1 chrI:13547345-13547425 ( 57) AAAAGAGC 1 chrV:10876644-10876724 ( 1) AAAAGAGC 1 chrI:9315599-9315679 ( 55) AAAAGAAA 1 chrX:3022870-3022950 ( 34) AAAAGAGC 1 chrII:9170207-9170287 ( 47) GAAAGAAA 1 chrI:9343940-9344020 ( 23) GAGAAAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGAGAGA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.6186 E= 1.0e-007 72 -35 66 -1204 194 -1204 -1204 -1204 1 -1204 162 -1204 194 -1204 -1204 -1204 -345 -1204 202 -1204 194 -1204 -1204 -1204 -28 -1204 171 -1204 163 -35 -1204 -1204 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGAGAGA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 1.0e-007 0.428571 0.190476 0.380952 0.000000 1.000000 0.000000 0.000000 0.000000 0.261905 0.000000 0.738095 0.000000 1.000000 0.000000 0.000000 0.000000 0.023810 0.000000 0.976190 0.000000 1.000000 0.000000 0.000000 0.000000 0.214286 0.000000 0.785714 0.000000 0.809524 0.190476 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGAGAGA MEME-2 regular expression -------------------------------------------------------------------------------- [AG]A[GA]AGA[GA]A -------------------------------------------------------------------------------- Time 8.77 secs. ******************************************************************************** ******************************************************************************** MOTIF SYACGTGM MEME-3 width = 8 sites = 36 llr = 304 E-value = 2.4e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif SYACGTGM MEME-3 Description -------------------------------------------------------------------------------- Simplified A 2:a::::5 pos.-specific C 54:a:::4 probability G 3:::a:a1 matrix T :6:::a:: bits 2.1 **** 1.8 ***** 1.6 ***** 1.4 ***** Relative 1.2 ***** Entropy 1.0 ****** (12.2 bits) 0.8 ****** 0.6 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTACGTGA consensus GC C sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYACGTGM MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:2598852-2598932 11 2.93e-05 TTGGGCTGGC CTACGTGC CGAGAGGGCG chrIII:7376578-7376658 32 2.93e-05 AGCGGGAGAA CTACGTGC CGATTTGGCA chrX:7952418-7952498 15 2.93e-05 ACATGTTGGT CTACGTGC AACAAGTACG chrV:20712948-20713028 11 2.93e-05 AAATTAAAAG CTACGTGC ACTTTTAGGC chrIV:9535202-9535282 17 2.93e-05 GAAGAAGAAG CTACGTGA CCTGAAGACA chrIV:9718466-9718546 24 2.93e-05 GACCCCGTGT CTACGTGA CAGATGTAAT chrV:13082630-13082710 5 2.93e-05 ATGC CTACGTGC AAACAGAGAC chrIV:5656109-5656189 8 2.93e-05 TAAATGC CTACGTGA CTGTTGTTAG chrI:3682119-3682199 64 2.93e-05 ATAAGATAGG CTACGTGA GTCGCTTAT chrIV:4026082-4026162 49 2.93e-05 GGGGGGGGGG CTACGTGC CAAACGCAAG chrX:17631071-17631151 36 2.93e-05 CCAACGGGGG CTACGTGA CAAAACGAAA chrII:9160384-9160464 53 2.93e-05 GTACGCATGT CTACGTGA CTTTCATCAA chrX:11969699-11969779 27 2.93e-05 AACTCGATGG CTACGTGA CAAATGCAAT chrIV:14219815-14219895 11 2.93e-05 AGTCTATTGC CTACGTGA CTTTTCTCAT chrX:4142238-4142318 12 5.69e-05 AAATCAGACG CCACGTGA GTCTGGCCGC chrV:5271594-5271674 67 8.61e-05 TTCACGTGAT GTACGTGC AAAAAG chrI:2591584-2591664 4 8.61e-05 TGC GTACGTGC TCTTTTCCAA chrV:3771578-3771658 31 8.61e-05 AATGACCACC GTACGTGA CTCTAGTCAA chrV:4131664-4131744 4 8.61e-05 TGC GTACGTGA TTAGTGGAAC chrX:12454419-12454499 1 8.61e-05 . GTACGTGC CAAACATCAA chrX:6742199-6742279 26 1.14e-04 CATGCGAGGC GCACGTGC ATACACACAC chrV:10715935-10716015 16 1.14e-04 CGTCTCGCGC GCACGTGA CCGGAGGGAA chrII:14044327-14044407 38 1.14e-04 GGGCACGGGG GCACGTGA TGACAGACGA chrX:5355462-5355542 37 1.14e-04 TCAATAGAGC GCACGTGC AATTCTCACG chrIV:11225341-11225421 46 1.45e-04 AAGAAGATGC ATACGTGC GTGCCTACCG chrV:11824258-11824338 51 1.45e-04 GGTAAAGAAA ATACGTGC ACATTTTGAA chrX:2071512-2071592 13 1.75e-04 AAAGCGAGTG ACACGTGA CTTGAGGTCA chrX:17633308-17633388 22 1.75e-04 CCGCCAACAC ACACGTGC ACTATTTTGC chrX:17451549-17451629 33 1.75e-04 GTGCACTAAC ACACGTGC CATTCTCATT chrX:13358737-13358817 27 1.75e-04 CGTCCATATG ACACGTGA CGGAAACGAT chrV:7093971-7094051 45 1.75e-04 GAGAGAAAGA ACACGTGA GAAGAAGACA chrI:7659185-7659265 43 1.75e-04 TCTCTTGTAC ACACGTGA TTGTCTGTAC chrIV:8028494-8028574 66 2.02e-04 TTCAAAGTTT CCACGTGG CAGGGTT chrIV:11956465-11956545 29 2.02e-04 GATTAGAGAC CCACGTGG GTGAGAGTCG chrI:10553872-10553952 54 2.29e-04 CCGTACTTCA GCACGTGG CGAGACCCGA chrV:13657508-13657588 55 2.29e-04 GGAATCGGCA GCACGTGG TGGGGGAAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYACGTGM MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:2598852-2598932 2.9e-05 10_[+3]_62 chrIII:7376578-7376658 2.9e-05 31_[+3]_41 chrX:7952418-7952498 2.9e-05 14_[+3]_58 chrV:20712948-20713028 2.9e-05 10_[+3]_62 chrIV:9535202-9535282 2.9e-05 16_[+3]_56 chrIV:9718466-9718546 2.9e-05 23_[+3]_49 chrV:13082630-13082710 2.9e-05 4_[+3]_68 chrIV:5656109-5656189 2.9e-05 7_[+3]_65 chrI:3682119-3682199 2.9e-05 63_[+3]_9 chrIV:4026082-4026162 2.9e-05 48_[+3]_24 chrX:17631071-17631151 2.9e-05 35_[+3]_37 chrII:9160384-9160464 2.9e-05 52_[+3]_20 chrX:11969699-11969779 2.9e-05 26_[+3]_46 chrIV:14219815-14219895 2.9e-05 10_[+3]_62 chrX:4142238-4142318 5.7e-05 11_[+3]_61 chrV:5271594-5271674 8.6e-05 66_[+3]_6 chrI:2591584-2591664 8.6e-05 3_[+3]_69 chrV:3771578-3771658 8.6e-05 30_[+3]_42 chrV:4131664-4131744 8.6e-05 3_[+3]_69 chrX:12454419-12454499 8.6e-05 [+3]_72 chrX:6742199-6742279 0.00011 25_[+3]_47 chrV:10715935-10716015 0.00011 15_[+3]_57 chrII:14044327-14044407 0.00011 37_[+3]_35 chrX:5355462-5355542 0.00011 36_[+3]_36 chrIV:11225341-11225421 0.00015 45_[+3]_27 chrV:11824258-11824338 0.00015 50_[+3]_22 chrX:2071512-2071592 0.00018 12_[+3]_60 chrX:17633308-17633388 0.00018 21_[+3]_51 chrX:17451549-17451629 0.00018 32_[+3]_40 chrX:13358737-13358817 0.00018 26_[+3]_46 chrV:7093971-7094051 0.00018 44_[+3]_28 chrI:7659185-7659265 0.00018 42_[+3]_30 chrIV:8028494-8028574 0.0002 65_[+3]_7 chrIV:11956465-11956545 0.0002 28_[+3]_44 chrI:10553872-10553952 0.00023 53_[+3]_19 chrV:13657508-13657588 0.00023 54_[+3]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYACGTGM MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SYACGTGM width=8 seqs=36 chrX:2598852-2598932 ( 11) CTACGTGC 1 chrIII:7376578-7376658 ( 32) CTACGTGC 1 chrX:7952418-7952498 ( 15) CTACGTGC 1 chrV:20712948-20713028 ( 11) CTACGTGC 1 chrIV:9535202-9535282 ( 17) CTACGTGA 1 chrIV:9718466-9718546 ( 24) CTACGTGA 1 chrV:13082630-13082710 ( 5) CTACGTGC 1 chrIV:5656109-5656189 ( 8) CTACGTGA 1 chrI:3682119-3682199 ( 64) CTACGTGA 1 chrIV:4026082-4026162 ( 49) CTACGTGC 1 chrX:17631071-17631151 ( 36) CTACGTGA 1 chrII:9160384-9160464 ( 53) CTACGTGA 1 chrX:11969699-11969779 ( 27) CTACGTGA 1 chrIV:14219815-14219895 ( 11) CTACGTGA 1 chrX:4142238-4142318 ( 12) CCACGTGA 1 chrV:5271594-5271674 ( 67) GTACGTGC 1 chrI:2591584-2591664 ( 4) GTACGTGC 1 chrV:3771578-3771658 ( 31) GTACGTGA 1 chrV:4131664-4131744 ( 4) GTACGTGA 1 chrX:12454419-12454499 ( 1) GTACGTGC 1 chrX:6742199-6742279 ( 26) GCACGTGC 1 chrV:10715935-10716015 ( 16) GCACGTGA 1 chrII:14044327-14044407 ( 38) GCACGTGA 1 chrX:5355462-5355542 ( 37) GCACGTGC 1 chrIV:11225341-11225421 ( 46) ATACGTGC 1 chrV:11824258-11824338 ( 51) ATACGTGC 1 chrX:2071512-2071592 ( 13) ACACGTGA 1 chrX:17633308-17633388 ( 22) ACACGTGC 1 chrX:17451549-17451629 ( 33) ACACGTGC 1 chrX:13358737-13358817 ( 27) ACACGTGA 1 chrV:7093971-7094051 ( 45) ACACGTGA 1 chrI:7659185-7659265 ( 43) ACACGTGA 1 chrIV:8028494-8028574 ( 66) CCACGTGG 1 chrIV:11956465-11956545 ( 29) CCACGTGG 1 chrI:10553872-10553952 ( 54) GCACGTGG 1 chrV:13657508-13657588 ( 55) GCACGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYACGTGM MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.8321 E= 2.4e-005 -23 96 34 -1181 -1181 78 -1181 119 194 -1181 -1181 -1181 -1181 205 -1181 -1181 -1181 -1181 205 -1181 -1181 -1181 -1181 196 -1181 -1181 205 -1181 86 78 -112 -1181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYACGTGM MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 2.4e-005 0.222222 0.472222 0.305556 0.000000 0.000000 0.416667 0.000000 0.583333 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.472222 0.416667 0.111111 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SYACGTGM MEME-3 regular expression -------------------------------------------------------------------------------- [CGA][TC]ACGTG[AC] -------------------------------------------------------------------------------- Time 12.30 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTGCACG MEME-4 width = 8 sites = 18 llr = 175 E-value = 6.7e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTGCACG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::a:: pos.-specific C :::2a:a: probability G ::27:::a matrix T aa82:::: bits 2.1 ** * ** 1.8 ** **** 1.6 ** **** 1.4 ** **** Relative 1.2 *** **** Entropy 1.0 *** **** (14.0 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTGCACG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGCACG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:4142238-4142318 73 1.49e-05 GATGTTTCCA TTTGCACG chrII:11050054-11050134 73 1.49e-05 CAATGCGATT TTTGCACG chrII:12040355-12040435 66 1.49e-05 GCAGTCCGAG TTTGCACG TATTTTG chrII:11724603-11724683 38 1.49e-05 GTTCTCGCGT TTTGCACG TACTTTGCGC chrX:4142733-4142813 21 1.49e-05 ATATTCGTTT TTTGCACG TCGCCGGCCG chrIII:67222-67302 45 1.49e-05 GTTTTGACAA TTTGCACG TAGCGTGATT chrX:17627563-17627643 46 1.49e-05 GTATTCGGTT TTTGCACG TCGCCAGCTT chrX:7661357-7661437 29 1.49e-05 TTCTTGCGAT TTTGCACG TATTCGTCCT chrIII:1080715-1080795 30 2.89e-05 GCACTTGCAC TTGGCACG ATGCCAAGTG chrX:2939256-2939336 22 2.89e-05 AAAATGCGTT TTGGCACG TCGAAAACAT chrX:16131183-16131263 29 2.89e-05 AAATTGGCCA TTGGCACG TTTCCCAGAG chrX:3116383-3116463 51 2.89e-05 TTGCTGGCCG TTGGCACG TAGGCAACGG chrIV:8028494-8028574 42 4.39e-05 TCTTCACTCA TTTCCACG CCAAATTTCA chrX:15079461-15079541 34 4.39e-05 TCGGCAGTCC TTTCCACG CAAACATCAC chrII:9170207-9170287 22 4.39e-05 CTCAGACATT TTTCCACG AAAGTTTGTG chrII:221356-221436 2 5.97e-05 A TTTTCACG GTGTCTGGCG chrX:1620977-1621057 32 5.97e-05 TAGATGATTT TTTTCACG ATTTCTATTG chrII:4941774-4941854 37 5.97e-05 TTTGTGCATC TTTTCACG TACTCCGCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGCACG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:4142238-4142318 1.5e-05 72_[+4] chrII:11050054-11050134 1.5e-05 72_[+4] chrII:12040355-12040435 1.5e-05 65_[+4]_7 chrII:11724603-11724683 1.5e-05 37_[+4]_35 chrX:4142733-4142813 1.5e-05 20_[+4]_52 chrIII:67222-67302 1.5e-05 44_[+4]_28 chrX:17627563-17627643 1.5e-05 45_[+4]_27 chrX:7661357-7661437 1.5e-05 28_[+4]_44 chrIII:1080715-1080795 2.9e-05 29_[+4]_43 chrX:2939256-2939336 2.9e-05 21_[+4]_51 chrX:16131183-16131263 2.9e-05 28_[+4]_44 chrX:3116383-3116463 2.9e-05 50_[+4]_22 chrIV:8028494-8028574 4.4e-05 41_[+4]_31 chrX:15079461-15079541 4.4e-05 33_[+4]_39 chrII:9170207-9170287 4.4e-05 21_[+4]_51 chrII:221356-221436 6e-05 1_[+4]_71 chrX:1620977-1621057 6e-05 31_[+4]_41 chrII:4941774-4941854 6e-05 36_[+4]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGCACG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTGCACG width=8 seqs=18 chrX:4142238-4142318 ( 73) TTTGCACG 1 chrII:11050054-11050134 ( 73) TTTGCACG 1 chrII:12040355-12040435 ( 66) TTTGCACG 1 chrII:11724603-11724683 ( 38) TTTGCACG 1 chrX:4142733-4142813 ( 21) TTTGCACG 1 chrIII:67222-67302 ( 45) TTTGCACG 1 chrX:17627563-17627643 ( 46) TTTGCACG 1 chrX:7661357-7661437 ( 29) TTTGCACG 1 chrIII:1080715-1080795 ( 30) TTGGCACG 1 chrX:2939256-2939336 ( 22) TTGGCACG 1 chrX:16131183-16131263 ( 29) TTGGCACG 1 chrX:3116383-3116463 ( 51) TTGGCACG 1 chrIV:8028494-8028574 ( 42) TTTCCACG 1 chrX:15079461-15079541 ( 34) TTTCCACG 1 chrII:9170207-9170287 ( 22) TTTCCACG 1 chrII:221356-221436 ( 2) TTTTCACG 1 chrX:1620977-1621057 ( 32) TTTTCACG 1 chrII:4941774-4941854 ( 37) TTTTCACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGCACG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8329 E= 6.7e-002 -1081 -1081 -1081 196 -1081 -1081 -1081 196 -1081 -1081 -12 160 -1081 -54 147 -62 -1081 205 -1081 -1081 194 -1081 -1081 -1081 -1081 205 -1081 -1081 -1081 -1081 205 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGCACG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 6.7e-002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.222222 0.777778 0.000000 0.166667 0.666667 0.166667 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTGCACG MEME-4 regular expression -------------------------------------------------------------------------------- TT[TG]GCACG -------------------------------------------------------------------------------- Time 15.79 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCGTCT MEME-5 width = 8 sites = 13 llr = 127 E-value = 1.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::2::: pos.-specific C a21a::a: probability G ::9:8::1 matrix T :8:::a:9 bits 2.1 * * ** 1.8 * * ** 1.6 * ** *** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (14.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTGCGTCT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:10935521-10935601 53 1.38e-05 TGTCTGTCCT CTGCGTCT CTGACCTTTT chrX:11207138-11207218 30 1.38e-05 ACACCGATGT CTGCGTCT CTAATGATAT chrV:10466742-10466822 2 1.38e-05 T CTGCGTCT CCGTGCTCTC chrI:10562561-10562641 14 1.38e-05 CTCACTCCAC CTGCGTCT ATTTCTCTTC chrIV:957955-958035 19 1.38e-05 CTCGTCGTGT CTGCGTCT CCTCTACCCC chrIII:6897783-6897863 38 1.38e-05 CTCATTTTCT CTGCGTCT CAACCGCTCC chrV:20712948-20713028 68 1.38e-05 TACAATTTCT CTGCGTCT CTTTA chrIV:1420274-1420354 57 2.69e-05 CGACGCGCAA CCGCGTCT CGAGTGTGCA chrV:4131664-4131744 32 2.69e-05 GTCTAACCTC CCGCGTCT CCACATTCAA chrII:8787571-8787651 10 4.18e-05 ACTTTCTGT CTGCATCT CTCAGTCATC chrX:3022870-3022950 47 4.18e-05 AGAGCACCAG CTGCATCT ACTTGCTTGT chrI:14769054-14769134 37 5.48e-05 CTTGTAACGT CTGCGTCG TCTTCTCACA chrV:7980613-7980693 38 6.87e-05 ATTTTTCCCT CTCCGTCT CATCGTCTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:10935521-10935601 1.4e-05 52_[+5]_20 chrX:11207138-11207218 1.4e-05 29_[+5]_43 chrV:10466742-10466822 1.4e-05 1_[+5]_71 chrI:10562561-10562641 1.4e-05 13_[+5]_59 chrIV:957955-958035 1.4e-05 18_[+5]_54 chrIII:6897783-6897863 1.4e-05 37_[+5]_35 chrV:20712948-20713028 1.4e-05 67_[+5]_5 chrIV:1420274-1420354 2.7e-05 56_[+5]_16 chrV:4131664-4131744 2.7e-05 31_[+5]_41 chrII:8787571-8787651 4.2e-05 9_[+5]_63 chrX:3022870-3022950 4.2e-05 46_[+5]_26 chrI:14769054-14769134 5.5e-05 36_[+5]_36 chrV:7980613-7980693 6.9e-05 37_[+5]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCGTCT width=8 seqs=13 chrIV:10935521-10935601 ( 53) CTGCGTCT 1 chrX:11207138-11207218 ( 30) CTGCGTCT 1 chrV:10466742-10466822 ( 2) CTGCGTCT 1 chrI:10562561-10562641 ( 14) CTGCGTCT 1 chrIV:957955-958035 ( 19) CTGCGTCT 1 chrIII:6897783-6897863 ( 38) CTGCGTCT 1 chrV:20712948-20713028 ( 68) CTGCGTCT 1 chrIV:1420274-1420354 ( 57) CCGCGTCT 1 chrV:4131664-4131744 ( 32) CCGCGTCT 1 chrII:8787571-8787651 ( 10) CTGCATCT 1 chrX:3022870-3022950 ( 47) CTGCATCT 1 chrI:14769054-14769134 ( 37) CTGCGTCG 1 chrV:7980613-7980693 ( 38) CTCCGTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.2095 E= 1.1e+003 -1035 205 -1035 -1035 -1035 -65 -1035 172 -1035 -165 194 -1035 -1035 205 -1035 -1035 -76 -1035 181 -1035 -1035 -1035 -1035 196 -1035 205 -1035 -1035 -1035 -1035 -164 185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 1.1e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.153846 0.000000 0.846154 0.000000 0.076923 0.923077 0.000000 0.000000 1.000000 0.000000 0.000000 0.153846 0.000000 0.846154 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.076923 0.923077 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-5 regular expression -------------------------------------------------------------------------------- CTGCGTCT -------------------------------------------------------------------------------- Time 19.23 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:7661357-7661437 3.38e-05 1_[+1(1.47e-05)]_19_[+4(1.49e-05)]_\ 44 chrII:8931567-8931647 3.07e-01 80 chrI:7581907-7581987 2.26e-01 80 chrII:8483915-8483995 7.33e-02 80 chrIV:14219815-14219895 5.23e-02 10_[+3(2.93e-05)]_62 chrX:3022870-3022950 1.15e-04 46_[+5(4.18e-05)]_26 chrX:11969699-11969779 1.19e-02 26_[+3(2.93e-05)]_46 chrX:17627563-17627643 9.05e-04 45_[+4(1.49e-05)]_27 chrIII:67222-67302 4.59e-02 44_[+4(1.49e-05)]_28 chrII:9160384-9160464 4.48e-03 52_[+3(2.93e-05)]_20 chrX:4142733-4142813 1.20e-02 20_[+4(1.49e-05)]_52 chrIV:13396561-13396641 4.38e-02 80 chrI:13576487-13576567 9.21e-03 80 chrIII:3908382-3908462 1.25e-01 80 chrI:9315599-9315679 1.92e-01 80 chrX:3116383-3116463 4.00e-02 50_[+4(2.89e-05)]_22 chrII:11724603-11724683 1.91e-03 37_[+4(1.49e-05)]_35 chrII:8451596-8451676 1.69e-02 80 chrIII:10907876-10907956 3.84e-01 80 chrX:12454419-12454499 7.00e-02 [+3(8.61e-05)]_72 chrII:12615572-12615652 3.17e-01 80 chrV:6247449-6247529 2.87e-01 80 chrX:3090211-3090291 5.47e-02 80 chrII:12040355-12040435 8.30e-04 43_[+2(3.26e-05)]_14_[+4(1.49e-05)]_\ 7 chrV:3579338-3579418 7.99e-02 80 chrII:9170207-9170287 2.68e-02 21_[+4(4.39e-05)]_51 chrV:6517336-6517416 4.79e-04 20_[+4(8.87e-05)]_42_[+2(4.83e-05)]_\ 2 chrX:17631071-17631151 5.02e-02 35_[+3(2.93e-05)]_37 chrIV:4026082-4026162 3.85e-02 48_[+3(2.93e-05)]_24 chrX:6729175-6729255 1.20e-01 80 chrI:3682119-3682199 1.41e-01 63_[+3(2.93e-05)]_9 chrII:13638612-13638692 4.25e-01 80 chrV:4131664-4131744 3.16e-03 3_[+3(8.61e-05)]_20_[+5(2.69e-05)]_\ 41 chrX:5355462-5355542 9.58e-03 80 chrIV:5656109-5656189 4.04e-03 7_[+3(2.93e-05)]_65 chrII:14244599-14244679 2.61e-02 37_[+2(3.26e-05)]_35 chrIII:10905332-10905412 6.80e-02 47_[+1(4.42e-05)]_25 chrX:8470489-8470569 4.13e-01 80 chrIV:828607-828687 1.37e-01 80 chrV:10468432-10468512 4.77e-02 80 chrII:9606741-9606821 5.13e-02 80 chrI:6569505-6569585 1.71e-01 80 chrII:4941774-4941854 1.58e-04 36_[+4(5.97e-05)]_9_[+1(4.42e-05)]_\ 19 chrX:10051825-10051905 4.27e-01 80 chrV:3777155-3777235 1.84e-03 14_[+1(4.42e-05)]_58 chrV:13082630-13082710 6.20e-04 4_[+3(2.93e-05)]_22_[+1(4.42e-05)]_\ 38 chrI:13065889-13065969 8.36e-02 25_[+1(1.47e-05)]_47 chrX:15079461-15079541 2.36e-02 33_[+4(4.39e-05)]_39 chrX:11947305-11947385 1.94e-02 46_[+2(1.70e-05)]_26 chrIV:9718466-9718546 1.12e-02 23_[+3(2.93e-05)]_49 chrII:11050054-11050134 3.76e-02 72_[+4(1.49e-05)] chrIII:10717647-10717727 5.50e-02 61_[+4(5.97e-05)]_11 chrI:10577167-10577247 1.48e-02 80 chrX:4142238-4142318 1.29e-04 11_[+3(5.69e-05)]_53_[+4(1.49e-05)] chrV:10876644-10876724 5.29e-02 80 chrII:9171013-9171093 8.23e-01 80 chrX:1504966-1505046 6.92e-01 80 chrX:4139727-4139807 6.31e-02 80 chrV:3771578-3771658 4.50e-02 30_[+3(8.61e-05)]_42 chrI:4644334-4644414 6.47e-01 80 chrI:14938248-14938328 2.49e-01 80 chrX:16131183-16131263 2.88e-03 28_[+4(2.89e-05)]_44 chrX:16931555-16931635 7.37e-01 80 chrV:11824258-11824338 2.84e-02 27_[+2(6.67e-05)]_45 chrII:8740436-8740516 6.76e-01 80 chrIV:11956465-11956545 3.69e-02 80 chrIII:13565025-13565105 2.44e-01 80 chrIV:13395328-13395408 4.25e-02 42_[+5(9.51e-05)]_30 chrX:3106277-3106357 1.59e-02 50_[+1(5.89e-05)]_22 chrV:13909557-13909637 6.57e-01 80 chrIV:8028494-8028574 4.39e-04 19_[+4(8.87e-05)]_14_[+4(4.39e-05)]_\ 13_[+4(4.39e-05)]_10 chrII:14044327-14044407 1.41e-02 80 chrI:7659185-7659265 9.61e-06 30_[+1(4.42e-05)]_31_[+2(3.26e-05)]_\ 3 chrX:6740744-6740824 6.10e-02 80 chrI:7472894-7472974 8.81e-01 80 chrI:2591584-2591664 1.88e-01 3_[+3(8.61e-05)]_69 chrI:3867347-3867427 6.89e-04 12_[+1(4.42e-05)]_4_[+1(5.89e-05)]_\ 19_[+2(6.67e-05)]_21 chrII:11756933-11757013 9.27e-01 80 chrIV:9535202-9535282 7.55e-02 16_[+3(2.93e-05)]_56 chrV:7093971-7094051 2.55e-02 80 chrII:8485800-8485880 3.76e-01 80 chrV:10174707-10174787 1.59e-01 80 chrX:3787515-3787595 4.13e-03 80 chrX:864541-864621 8.28e-01 80 chrIV:3636616-3636696 2.15e-03 24_[+2(1.70e-05)]_48 chrIV:11225341-11225421 1.31e-03 17_[+2(6.67e-05)]_55 chrIII:7643246-7643326 6.69e-02 4_[+2(4.83e-05)]_68 chrX:8546163-8546243 6.14e-01 80 chrV:5576162-5576242 2.54e-01 80 chrX:7234732-7234812 3.83e-01 80 chrIII:10904281-10904361 3.88e-01 80 chrIV:10919323-10919403 1.31e-01 80 chrIII:4015416-4015496 6.86e-01 80 chrX:13358737-13358817 7.13e-02 80 chrV:20712948-20713028 3.27e-05 10_[+3(2.93e-05)]_11_[+1(8.85e-05)]_\ 5_[+3(5.69e-05)]_17_[+5(1.38e-05)]_5 chrX:1620977-1621057 5.00e-02 31_[+4(5.97e-05)]_41 chrV:11572963-11573043 8.88e-02 80 chrX:2971631-2971711 5.87e-04 16_[+2(6.67e-05)]_56 chrX:7952418-7952498 1.44e-01 14_[+3(2.93e-05)]_58 chrX:2939256-2939336 6.62e-03 21_[+4(2.89e-05)]_51 chrX:17451549-17451629 1.88e-02 16_[+1(5.89e-05)]_56 chrI:14769054-14769134 7.24e-03 36_[+5(5.48e-05)]_36 chrII:10559024-10559104 1.59e-01 13_[+2(4.83e-05)]_59 chrI:9097731-9097811 7.25e-03 1_[+1(5.89e-05)]_60_[+2(6.67e-05)]_\ 3 chrX:15274214-15274294 6.20e-02 80 chrV:1433857-1433937 6.44e-01 80 chrV:6515206-6515286 7.54e-01 80 chrIII:6375147-6375227 3.10e-01 80 chrV:7980613-7980693 2.18e-03 37_[+5(6.87e-05)]_35 chrX:14561570-14561650 3.11e-02 15_[+1(1.47e-05)]_[+1(1.47e-05)]_49 chrX:915634-915714 1.68e-01 80 chrV:9343285-9343365 5.19e-01 80 chrV:1434505-1434585 4.82e-01 80 chrI:4647214-4647294 6.60e-01 80 chrX:13356566-13356646 4.46e-01 80 chrX:17628449-17628529 1.60e-01 80 chrIV:9676699-9676779 7.36e-01 80 chrI:2628726-2628806 7.83e-01 80 chrIV:4216270-4216350 4.15e-01 80 chrV:6240068-6240148 7.30e-01 80 chrIV:4020004-4020084 4.27e-02 8_[+2(3.26e-05)]_64 chrV:8653565-8653645 1.34e-01 80 chrV:13658796-13658876 6.94e-01 80 chrIII:7376578-7376658 3.07e-03 31_[+3(2.93e-05)]_41 chrIV:4406021-4406101 7.85e-02 71_[+1(7.35e-05)]_1 chrI:6611314-6611394 4.06e-03 80 chrIII:7499632-7499712 8.24e-01 80 chrX:17135820-17135900 1.02e-01 80 chrX:8422126-8422206 1.02e-02 60_[+1(4.42e-05)]_12 chrII:5337000-5337080 2.47e-01 20_[+2(3.26e-05)]_52 chrII:12878878-12878958 3.82e-02 49_[+2(4.83e-05)]_23 chrIII:6897783-6897863 1.24e-02 37_[+5(1.38e-05)]_35 chrX:1909522-1909602 3.58e-01 80 chrI:3806623-3806703 8.14e-01 80 chrX:3694300-3694380 4.33e-01 80 chrIV:6809895-6809975 4.49e-01 80 chrII:9937785-9937865 1.40e-01 80 chrIII:5845601-5845681 4.29e-01 80 chrX:15365348-15365428 1.07e-01 80 chrI:10518076-10518156 2.46e-01 80 chrIII:9766401-9766481 1.66e-01 47_[+1(8.85e-05)]_25 chrIII:13465275-13465355 1.27e-01 80 chrX:8368324-8368404 2.01e-01 80 chrI:7082172-7082252 3.69e-01 80 chrIII:4693449-4693529 5.85e-01 80 chrV:10715935-10716015 5.47e-03 80 chrV:13656607-13656687 4.93e-01 80 chrX:13250289-13250369 6.46e-01 80 chrII:9284202-9284282 1.06e-01 80 chrIV:2708795-2708875 5.81e-01 80 chrII:14296415-14296495 1.95e-01 80 chrX:4190717-4190797 3.80e-01 80 chrI:7492057-7492137 5.18e-02 4_[+1(1.47e-05)]_68 chrX:15492896-15492976 4.46e-02 80 chrIV:8527708-8527788 2.38e-02 80 chrIV:957955-958035 2.31e-02 18_[+5(1.38e-05)]_54 chrX:10637562-10637642 2.42e-01 80 chrI:7563167-7563247 7.73e-02 80 chrX:6750340-6750420 4.48e-01 80 chrX:14589265-14589345 8.44e-02 80 chrV:5271594-5271674 1.37e-02 66_[+3(8.61e-05)]_6 chrIII:5506387-5506467 9.91e-01 80 chrV:3717968-3718048 1.07e-01 72_[+2(3.26e-05)] chrII:13462165-13462245 1.31e-01 80 chrIII:4193750-4193830 3.61e-03 46_[+1(1.47e-05)]_26 chrX:6736580-6736660 5.63e-03 35_[+1(7.35e-05)]_8_[+4(8.87e-05)]_\ 21 chrV:13657508-13657588 3.91e-03 80 chrX:6737755-6737835 2.71e-01 80 chrIII:4494688-4494768 5.05e-01 80 chrII:6849514-6849594 6.12e-02 80 chrX:4524109-4524189 4.33e-01 80 chrX:17633308-17633388 3.76e-02 80 chrIII:1080715-1080795 1.10e-03 1_[+2(6.67e-05)]_20_[+4(2.89e-05)]_\ 43 chrX:12018110-12018190 2.76e-01 80 chrV:6246692-6246772 5.93e-02 80 chrX:6254439-6254519 5.14e-04 47_[+2(6.67e-05)]_25 chrX:877127-877207 2.54e-02 46_[+1(7.35e-05)]_26 chrII:221356-221436 2.87e-03 1_[+4(5.97e-05)]_41_[+1(5.89e-05)]_\ 22 chrV:15566744-15566824 6.91e-01 80 chrIII:7208052-7208132 1.62e-01 80 chrI:10927518-10927598 7.78e-02 18_[+1(4.42e-05)]_54 chrI:10562561-10562641 7.77e-04 2_[+1(8.85e-05)]_3_[+5(1.38e-05)]_\ 59 chrX:8811099-8811179 1.37e-02 59_[+1(4.42e-05)]_13 chrX:14753641-14753721 6.19e-02 80 chrII:7528393-7528473 7.52e-01 80 chrX:8021790-8021870 2.98e-01 80 chrIII:8425243-8425323 2.78e-01 80 chrI:9343940-9344020 5.81e-01 80 chrV:6100777-6100857 3.98e-01 80 chrIII:10334146-10334226 1.40e-01 80 chrX:3788740-3788820 4.12e-01 80 chrX:15040888-15040968 6.64e-01 80 chrV:10466742-10466822 2.71e-03 1_[+5(1.38e-05)]_71 chrX:2071512-2071592 2.07e-02 80 chrII:6061646-6061726 2.84e-01 80 chrV:19622594-19622674 3.22e-02 68_[+5(6.87e-05)]_4 chrII:11746878-11746958 1.02e-01 68_[+2(1.70e-05)]_4 chrIII:6447762-6447842 7.66e-01 80 chrX:2598852-2598932 9.52e-04 10_[+3(2.93e-05)]_62 chrV:3315496-3315576 1.95e-03 40_[+1(7.35e-05)]_32 chrIII:9052671-9052751 8.72e-01 80 chrII:6888471-6888551 1.22e-01 33_[+1(8.85e-05)]_39 chrII:11874814-11874894 3.71e-01 80 chrIV:443851-443931 3.16e-01 80 chrX:16024674-16024754 3.58e-03 71_[+2(3.26e-05)]_1 chrII:18952-19032 2.02e-01 80 chrII:14399727-14399807 3.95e-01 80 chrX:16796999-16797079 3.74e-01 80 chrI:10553872-10553952 9.14e-02 80 chrII:8787571-8787651 3.76e-02 9_[+5(4.18e-05)]_63 chrI:8133801-8133881 9.22e-03 5_[+5(1.38e-05)]_67 chrV:5684704-5684784 9.08e-01 80 chrI:9380325-9380405 3.36e-01 80 chrI:10026052-10026132 3.38e-01 80 chrIV:11809758-11809838 4.93e-02 18_[+2(6.67e-05)]_45_[+2(1.70e-05)]_\ 1 chrX:6742199-6742279 1.80e-03 80 chrX:14560326-14560406 4.59e-01 80 chrI:7656784-7656864 4.87e-01 80 chrIV:1420274-1420354 7.37e-03 56_[+5(2.69e-05)]_16 chrIV:13322687-13322767 8.78e-02 57_[+2(3.26e-05)]_15 chrX:11299724-11299804 3.61e-01 80 chrX:7068517-7068597 1.62e-01 80 chrI:9113187-9113267 9.59e-03 31_[+5(1.38e-05)]_41 chrIV:4445889-4445969 6.12e-03 50_[+1(5.89e-05)]_22 chrX:11207138-11207218 6.35e-02 29_[+5(1.38e-05)]_43 chrII:10549021-10549101 5.83e-01 80 chrII:6565246-6565326 8.69e-01 80 chrV:6229507-6229587 1.87e-01 18_[+2(6.67e-05)]_54 chrX:1446919-1446999 2.63e-01 80 chrV:10965646-10965726 5.36e-01 80 chrIV:10252511-10252591 7.44e-02 21_[+1(1.47e-05)]_[+1(1.47e-05)]_\ [+1(1.47e-05)]_1_[+1(1.47e-05)]_4_[+1(4.42e-05)]_14 chrI:13547345-13547425 7.61e-02 80 chrIII:6421088-6421168 2.32e-01 80 chrI:8816546-8816626 9.94e-01 80 chrIII:8904270-8904350 1.58e-01 80 chrIII:11823465-11823545 2.33e-01 80 chrI:3825-3905 2.24e-01 80 chrI:6835417-6835497 9.63e-01 80 chrIV:10936269-10936349 7.64e-01 80 chrX:15354079-15354159 3.13e-02 26_[+2(3.26e-05)]_2_[+2(3.26e-05)]_\ 19_[+2(8.36e-05)]_9 chrIII:4195355-4195435 4.28e-01 80 chrIV:10935521-10935601 2.18e-03 15_[+1(4.42e-05)]_29_[+5(1.38e-05)]_\ 20 chrV:14696957-14697037 6.07e-04 13_[+1(8.85e-05)]_50_[+2(3.26e-05)]_\ 1 chrI:8426862-8426942 3.13e-04 66_[+5(1.38e-05)]_6 chrI:13337254-13337334 2.64e-01 80 chrIV:15471567-15471647 1.43e-02 80 chrIII:11066933-11067013 2.29e-01 80 chrX:2242959-2243039 8.08e-02 70_[+1(4.42e-05)]_2 chrIII:793687-793767 6.67e-01 80 chrIV:14464234-14464314 5.06e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n05.farnam.hpc.yale.internal ********************************************************************************