******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/Y55F3AM.14.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrV:5409086-5409166 1.0000 80 chrV:4775277-4775357 1.0000 80 chrV:6356224-6356304 1.0000 80 chrV:5404058-5404138 1.0000 80 chrV:10393896-10393976 1.0000 80 chrIV:5586465-5586545 1.0000 80 chrIII:3030005-3030085 1.0000 80 chrV:6350256-6350336 1.0000 80 chrV:5410820-5410900 1.0000 80 chrX:5982937-5983017 1.0000 80 chrIII:5897635-5897715 1.0000 80 chrV:729018-729098 1.0000 80 chrX:13207018-13207098 1.0000 80 chrII:9645368-9645448 1.0000 80 chrV:1156286-1156366 1.0000 80 chrV:10857328-10857408 1.0000 80 chrIII:12942469-12942549 1.0000 80 chrV:10714809-10714889 1.0000 80 chrV:1157637-1157717 1.0000 80 chrX:13009768-13009848 1.0000 80 chrV:627318-627398 1.0000 80 chrV:1154934-1155014 1.0000 80 chrIII:10634797-10634877 1.0000 80 chrV:5527957-5528037 1.0000 80 chrV:12530249-12530329 1.0000 80 chrII:5276864-5276944 1.0000 80 chrI:9094948-9095028 1.0000 80 chrV:4689419-4689499 1.0000 80 chrV:10887726-10887806 1.0000 80 chrIII:4070357-4070437 1.0000 80 chrX:15566846-15566926 1.0000 80 chrV:4825551-4825631 1.0000 80 chrII:7319686-7319766 1.0000 80 chrIV:2772452-2772532 1.0000 80 chrX:8017414-8017494 1.0000 80 chrV:10859961-10860041 1.0000 80 chrV:10722064-10722144 1.0000 80 chrX:13739581-13739661 1.0000 80 chrIV:5100326-5100406 1.0000 80 chrV:2275382-2275462 1.0000 80 chrV:10711867-10711947 1.0000 80 chrV:5027723-5027803 1.0000 80 chrV:10838366-10838446 1.0000 80 chrV:13783329-13783409 1.0000 80 chrIV:10341954-10342034 1.0000 80 chrV:6351273-6351353 1.0000 80 chrV:5475810-5475890 1.0000 80 chrX:4899792-4899872 1.0000 80 chrV:10717467-10717547 1.0000 80 chrV:4653247-4653327 1.0000 80 chrI:13417481-13417561 1.0000 80 chrV:4730241-4730321 1.0000 80 chrIII:7387455-7387535 1.0000 80 chrX:5653950-5654030 1.0000 80 chrX:6324847-6324927 1.0000 80 chrII:6849463-6849543 1.0000 80 chrII:14607262-14607342 1.0000 80 chrV:6346268-6346348 1.0000 80 chrI:999223-999303 1.0000 80 chrV:10944536-10944616 1.0000 80 chrX:13210644-13210724 1.0000 80 chrII:11617874-11617954 1.0000 80 chrX:4896041-4896121 1.0000 80 chrX:11469779-11469859 1.0000 80 chrIII:8685739-8685819 1.0000 80 chrIV:661168-661248 1.0000 80 chrII:10542846-10542926 1.0000 80 chrV:727727-727807 1.0000 80 chrV:7437632-7437712 1.0000 80 chrIII:8978888-8978968 1.0000 80 chrIV:1458392-1458472 1.0000 80 chrV:4817891-4817971 1.0000 80 chrV:4647471-4647551 1.0000 80 chrV:10861973-10862053 1.0000 80 chrV:20789296-20789376 1.0000 80 chrIII:6123823-6123903 1.0000 80 chrI:12548150-12548230 1.0000 80 chrIII:6299003-6299083 1.0000 80 chrV:7855846-7855926 1.0000 80 chrV:1158468-1158548 1.0000 80 chrV:1364504-1364584 1.0000 80 chrV:10477282-10477362 1.0000 80 chrIII:3807767-3807847 1.0000 80 chrV:10867737-10867817 1.0000 80 chrV:5018251-5018331 1.0000 80 chrX:13923418-13923498 1.0000 80 chrII:1236704-1236784 1.0000 80 chrV:4688223-4688303 1.0000 80 chrIV:6958804-6958884 1.0000 80 chrV:730445-730525 1.0000 80 chrIV:13702917-13702997 1.0000 80 chrV:10677630-10677710 1.0000 80 chrI:8308871-8308951 1.0000 80 chrV:4648043-4648123 1.0000 80 chrV:10729627-10729707 1.0000 80 chrV:11889801-11889881 1.0000 80 chrX:6571231-6571311 1.0000 80 chrI:6965767-6965847 1.0000 80 chrV:14847483-14847563 1.0000 80 chrV:4685670-4685750 1.0000 80 chrV:4694632-4694712 1.0000 80 chrII:9597891-9597971 1.0000 80 chrV:10866551-10866631 1.0000 80 chrV:11802634-11802714 1.0000 80 chrV:8662374-8662454 1.0000 80 chrIII:10337604-10337684 1.0000 80 chrV:18573410-18573490 1.0000 80 chrI:5372383-5372463 1.0000 80 chrI:14281884-14281964 1.0000 80 chrX:6253002-6253082 1.0000 80 chrIII:6168151-6168231 1.0000 80 chrX:4813079-4813159 1.0000 80 chrX:4662573-4662653 1.0000 80 chrIII:12023080-12023160 1.0000 80 chrI:9962914-9962994 1.0000 80 chrII:4456198-4456278 1.0000 80 chrV:19611795-19611875 1.0000 80 chrIV:15696939-15697019 1.0000 80 chrV:1607985-1608065 1.0000 80 chrIV:5582412-5582492 1.0000 80 chrIII:9826280-9826360 1.0000 80 chrV:11533154-11533234 1.0000 80 chrV:13606993-13607073 1.0000 80 chrX:3535703-3535783 1.0000 80 chrX:6134749-6134829 1.0000 80 chrII:1244610-1244690 1.0000 80 chrX:12405001-12405081 1.0000 80 chrII:6890298-6890378 1.0000 80 chrIII:7580769-7580849 1.0000 80 chrX:17419863-17419943 1.0000 80 chrI:9799811-9799891 1.0000 80 chrIII:11936333-11936413 1.0000 80 chrI:8868481-8868561 1.0000 80 chrI:10407565-10407645 1.0000 80 chrII:13903679-13903759 1.0000 80 chrII:2962724-2962804 1.0000 80 chrII:4749108-4749188 1.0000 80 chrII:3961422-3961502 1.0000 80 chrII:6993102-6993182 1.0000 80 chrII:11614293-11614373 1.0000 80 chrV:13111808-13111888 1.0000 80 chrI:6440531-6440611 1.0000 80 chrX:3126412-3126492 1.0000 80 chrII:7809157-7809237 1.0000 80 chrV:10478420-10478500 1.0000 80 chrII:15192499-15192579 1.0000 80 chrV:10719955-10720035 1.0000 80 chrV:6355280-6355360 1.0000 80 chrV:19610278-19610358 1.0000 80 chrV:8663159-8663239 1.0000 80 chrX:17519633-17519713 1.0000 80 chrX:13542796-13542876 1.0000 80 chrI:9850538-9850618 1.0000 80 chrV:10722263-10722343 1.0000 80 chrV:11119599-11119679 1.0000 80 chrV:11174868-11174948 1.0000 80 chrIV:2603656-2603736 1.0000 80 chrI:12044103-12044183 1.0000 80 chrX:2673579-2673659 1.0000 80 chrIV:2765216-2765296 1.0000 80 chrI:9380300-9380380 1.0000 80 chrX:13349255-13349335 1.0000 80 chrV:12539489-12539569 1.0000 80 chrI:1807939-1808019 1.0000 80 chrV:4131661-4131741 1.0000 80 chrV:9338510-9338590 1.0000 80 chrV:12529021-12529101 1.0000 80 chrX:5628661-5628741 1.0000 80 chrV:5409295-5409375 1.0000 80 chrV:4823879-4823959 1.0000 80 chrI:13060419-13060499 1.0000 80 chrIV:2553010-2553090 1.0000 80 chrV:16593109-16593189 1.0000 80 chrX:15274216-15274296 1.0000 80 chrV:10473139-10473219 1.0000 80 chrV:11799362-11799442 1.0000 80 chrIII:4656613-4656693 1.0000 80 chrX:9550055-9550135 1.0000 80 chrII:12787933-12788013 1.0000 80 chrIV:13178003-13178083 1.0000 80 chrIII:11694726-11694806 1.0000 80 chrV:2134443-2134523 1.0000 80 chrV:14366708-14366788 1.0000 80 chrII:8790076-8790156 1.0000 80 chrIII:8287703-8287783 1.0000 80 chrIII:6148583-6148663 1.0000 80 chrX:15604185-15604265 1.0000 80 chrIII:11336211-11336291 1.0000 80 chrV:11137261-11137341 1.0000 80 chrV:2133739-2133819 1.0000 80 chrIII:6137601-6137681 1.0000 80 chrIV:3163702-3163782 1.0000 80 chrV:10681404-10681484 1.0000 80 chrX:2698541-2698621 1.0000 80 chrX:9214094-9214174 1.0000 80 chrX:4982248-4982328 1.0000 80 chrIV:4469356-4469436 1.0000 80 chrV:8452145-8452225 1.0000 80 chrII:8742118-8742198 1.0000 80 chrV:4491560-4491640 1.0000 80 chrV:13908732-13908812 1.0000 80 chrIV:1168705-1168785 1.0000 80 chrV:726232-726312 1.0000 80 chrII:6562312-6562392 1.0000 80 chrI:9801319-9801399 1.0000 80 chrV:4499438-4499518 1.0000 80 chrIV:5081311-5081391 1.0000 80 chrIV:14594402-14594482 1.0000 80 chrIV:2605883-2605963 1.0000 80 chrV:5832918-5832998 1.0000 80 chrII:13678688-13678768 1.0000 80 chrX:11472162-11472242 1.0000 80 chrI:7578729-7578809 1.0000 80 chrV:2243008-2243088 1.0000 80 chrIV:5591290-5591370 1.0000 80 chrIII:6415314-6415394 1.0000 80 chrX:11068466-11068546 1.0000 80 chrV:4803204-4803284 1.0000 80 chrIV:1867003-1867083 1.0000 80 chrII:6707600-6707680 1.0000 80 chrI:9271288-9271368 1.0000 80 chrIII:3031443-3031523 1.0000 80 chrI:14061864-14061944 1.0000 80 chrIV:9918205-9918285 1.0000 80 chrI:14952660-14952740 1.0000 80 chrIII:3864364-3864444 1.0000 80 chrIV:5086235-5086315 1.0000 80 chrI:9332661-9332741 1.0000 80 chrIV:13388895-13388975 1.0000 80 chrV:11531120-11531200 1.0000 80 chrV:4190354-4190434 1.0000 80 chrII:10546034-10546114 1.0000 80 chrIII:5845672-5845752 1.0000 80 chrV:11077764-11077844 1.0000 80 chrII:11337449-11337529 1.0000 80 chrIV:8793351-8793431 1.0000 80 chrIII:7737024-7737104 1.0000 80 chrII:8131522-8131602 1.0000 80 chrX:15342357-15342437 1.0000 80 chrIII:13271169-13271249 1.0000 80 chrX:4391875-4391955 1.0000 80 chrX:11473433-11473513 1.0000 80 chrX:4151459-4151539 1.0000 80 chrIV:8526178-8526258 1.0000 80 chrIII:10299708-10299788 1.0000 80 chrX:8952132-8952212 1.0000 80 chrI:4308530-4308610 1.0000 80 chrV:10468509-10468589 1.0000 80 chrX:8986532-8986612 1.0000 80 chrIII:595619-595699 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_Y55F3AM.14/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/Y55F3AM.14.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.273 C 0.225 G 0.222 T 0.281 Background letter frequencies (from file dataset with add-one prior applied): A 0.273 C 0.225 G 0.222 T 0.281 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GAGARAAA MEME-1 width = 8 sites = 60 llr = 474 E-value = 4.2e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGARAAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3a296a89 pos.-specific C :::::::: probability G 7:814:21 matrix T :::::::: bits 2.2 2.0 * 1.7 * * 1.5 *** * * Relative 1.3 **** *** Entropy 1.1 ******** (11.4 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAGAAAAA consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:4391875-4391955 59 2.04e-05 AAGCGGCAGA GAGAAAAA GGAGAAGGGG chrV:4803204-4803284 45 2.04e-05 GAAGAATCCA GAGAAAAA ATATTCTTAC chrX:13542796-13542876 72 2.04e-05 TTGGaaaaaa gagaaaaa g chrI:9799811-9799891 6 2.04e-05 AATTT GAGAAAAA GACAAAGGAA chrI:6965767-6965847 2 2.04e-05 a gagaaaaa gaagGAGGAA chrI:12548150-12548230 13 2.04e-05 GCCAAAGTTA GAGAAAAA GAGACATAGA chrI:999223-999303 55 2.04e-05 AAAGAAATTA GAGAAAAA AGACCGGTCT chrIII:7387455-7387535 43 2.04e-05 GGAAAACGAA GAGAAAAA AGCAAAGACG chrIV:2772452-2772532 46 2.04e-05 ATGGGGGGGG GAGAAAAA TCAGGTGATG chrII:5276864-5276944 63 2.04e-05 CTCTGAAATG GAGAAAAA AGAGGCAAAA chrIII:5845672-5845752 8 3.70e-05 agatgac gaGAGAAA TTGAAAGACT chrIII:3031443-3031523 55 3.70e-05 GAATCAGGCA GAGAGAAA GAGAGAAATA chrIII:4656613-4656693 49 3.70e-05 ACGACGATAA GAGAGAAA GAAATGGCTC chrX:4813079-4813159 4 3.70e-05 GAA GAGAGAAA GGGGGTGAGA chrV:8662374-8662454 68 3.70e-05 GAATCATCGA GAGAGAAA GGCCA chrV:11802634-11802714 33 3.70e-05 GTAGCTGATT GAGAGAAA GGAAAGCCGT chrX:13210644-13210724 13 3.70e-05 GAAGGAAAAT GAGAGAAA AGGAAGGAAA chrIV:5100326-5100406 24 3.70e-05 AGGAAAATga gagagaaa gagagagagT chrV:10859961-10860041 52 3.70e-05 GTAGAAGGAG GAGAGAAA GAATATCAAT chrIV:9918205-9918285 40 6.21e-05 ACACGGTAGG AAGAAAAA TCTCTTTTAC chrI:13060419-13060499 73 6.21e-05 TTCGAAACGG AAGAAAAA chrIII:9826280-9826360 55 6.21e-05 agaagcaaga aagaaaaa aaagaaacga chrV:1607985-1608065 10 6.21e-05 AGAATCGCG AAGAAAAA GGCCGAGGGC chrI:14281884-14281964 29 6.21e-05 aaaacaaacg aagaaaaa agaagaagaC chrI:8308871-8308951 39 6.21e-05 GCATTTTTCA AAGAAAAA GAAGATATAT chrV:10861973-10862053 14 6.21e-05 gaaagatgaa aagaaaaa gagacaagCT chrV:4817891-4817971 44 6.21e-05 cgaagaaatg aagaaaaa gtcaaattca chrV:5027723-5027803 5 6.21e-05 CTGA AAGAAAAA CGTGAAGGGG chrIII:10634797-10634877 55 6.21e-05 GAAGAAAATG AAGAAAAA ACACGAAACA chrX:5982937-5983017 62 6.21e-05 gaaaagaaaa aagaaaaa gaagaagCTG chrV:11533154-11533234 12 8.25e-05 TCGAAAGTGA AAGAGAAA GGAGATGAAA chrV:10722064-10722144 38 9.91e-05 CGCCAAGAAC GAGAAAGA GGGCGGCGCC chrIII:13271169-13271249 18 1.38e-04 TGAAAAAAAG GAAAAAAA AGTAGAAGAC chrIV:5081311-5081391 41 1.38e-04 CCGATTCAAA GAGAGAGA GAGTGGTGAA chrII:6562312-6562392 3 1.38e-04 TG GAAAAAAA AGGCCAAGGA chrV:4823879-4823959 56 1.38e-04 GAAAAAGTAC GAAAAAAA TGTATTGCGA chrIV:5582412-5582492 13 1.38e-04 acaaacagaa gagagaga cgagagacAG chrV:20789296-20789376 48 1.38e-04 AAAAGCACAC GAAAAAAA TCGATGTCTT chrV:7437632-7437712 34 1.38e-04 CTCCTCAATT GAGAGAGA CGTTGGCTTG chrV:12530249-12530329 30 1.38e-04 CATTGAGATA GAAAAAAA GATAGAATAA chrIV:5586465-5586545 21 1.38e-04 CTGGTAAAGT GAGAGAGA TGAGGAacac chrV:13606993-13607073 46 1.75e-04 ggaggaggag gaggaAAA GGCGATGAAA chrV:4688223-4688303 45 1.75e-04 AAGCTCAAAT GAAAGAAA TTCGTGATGA chrV:1364504-1364584 48 1.75e-04 TACTTCGTTA GAAAGAAA ACGGGCGGCC chrX:8952132-8952212 33 1.91e-04 CTAGAAAATA GAGAAAAG GGGAGGGACC chrX:3126412-3126492 25 1.91e-04 CGAAGGCACA GAGAAAAG CGCTGAAGCG chrIII:6299003-6299083 15 2.05e-04 ACCGTATTTT GAGGGAAA TATCAGAAAA chrI:9801319-9801399 13 2.39e-04 ACGAAGAAGC GAGAGAAG GAGAAGAGTA chrX:15274216-15274296 16 2.86e-04 CCTTGCGGCA AAAAAAAA TGGAAAGTGG chrX:13009768-13009848 32 2.86e-04 ATATATTGAA AAGAGAGA TGCAAAATTG chrX:17419863-17419943 48 3.32e-04 GCCATTTATC AAAAGAAA CTTCATCACC chrI:9094948-9095028 37 3.32e-04 TTGACTGCGT AAGGAAAA TCATGTTTTG chrIV:2605883-2605963 67 3.89e-04 GACGATATTG GCGAAAAA GTGCTG chrV:4648043-4648123 26 4.06e-04 CGAGGGATGG AAGGGAAA GTGGTGGGAG chrIII:10299708-10299788 59 4.66e-04 CGAGTTGGCA GCGAGAAA CGCAGCGGCA chrII:8742118-8742198 68 4.80e-04 GGAAAGATTT GAGAAAGG ACGAT chrIV:2553010-2553090 5 4.80e-04 tagt gagaaagg tagttatttg chrIV:2765216-2765296 2 5.11e-04 a gagggaga cgcagacagc chrX:6324847-6324927 33 5.11e-04 CAAATTTCGT GAAGAAAA CAAACCGGGT chrIII:11336211-11336291 1 5.84e-04 . AAAAAAGA TGGAGAAGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:4391875-4391955 2e-05 58_[+1]_14 chrV:4803204-4803284 2e-05 44_[+1]_28 chrX:13542796-13542876 2e-05 71_[+1]_1 chrI:9799811-9799891 2e-05 5_[+1]_67 chrI:6965767-6965847 2e-05 1_[+1]_71 chrI:12548150-12548230 2e-05 12_[+1]_60 chrI:999223-999303 2e-05 54_[+1]_18 chrIII:7387455-7387535 2e-05 42_[+1]_30 chrIV:2772452-2772532 2e-05 45_[+1]_27 chrII:5276864-5276944 2e-05 62_[+1]_10 chrIII:5845672-5845752 3.7e-05 7_[+1]_65 chrIII:3031443-3031523 3.7e-05 54_[+1]_18 chrIII:4656613-4656693 3.7e-05 48_[+1]_24 chrX:4813079-4813159 3.7e-05 3_[+1]_69 chrV:8662374-8662454 3.7e-05 67_[+1]_5 chrV:11802634-11802714 3.7e-05 32_[+1]_40 chrX:13210644-13210724 3.7e-05 12_[+1]_60 chrIV:5100326-5100406 3.7e-05 23_[+1]_49 chrV:10859961-10860041 3.7e-05 51_[+1]_21 chrIV:9918205-9918285 6.2e-05 39_[+1]_33 chrI:13060419-13060499 6.2e-05 72_[+1] chrIII:9826280-9826360 6.2e-05 54_[+1]_18 chrV:1607985-1608065 6.2e-05 9_[+1]_63 chrI:14281884-14281964 6.2e-05 28_[+1]_44 chrI:8308871-8308951 6.2e-05 38_[+1]_34 chrV:10861973-10862053 6.2e-05 13_[+1]_59 chrV:4817891-4817971 6.2e-05 43_[+1]_29 chrV:5027723-5027803 6.2e-05 4_[+1]_68 chrIII:10634797-10634877 6.2e-05 54_[+1]_18 chrX:5982937-5983017 6.2e-05 61_[+1]_11 chrV:11533154-11533234 8.2e-05 11_[+1]_61 chrV:10722064-10722144 9.9e-05 37_[+1]_35 chrIII:13271169-13271249 0.00014 17_[+1]_55 chrIV:5081311-5081391 0.00014 40_[+1]_32 chrII:6562312-6562392 0.00014 2_[+1]_70 chrV:4823879-4823959 0.00014 55_[+1]_17 chrIV:5582412-5582492 0.00014 12_[+1]_60 chrV:20789296-20789376 0.00014 47_[+1]_25 chrV:7437632-7437712 0.00014 33_[+1]_39 chrV:12530249-12530329 0.00014 29_[+1]_43 chrIV:5586465-5586545 0.00014 20_[+1]_52 chrV:13606993-13607073 0.00017 45_[+1]_27 chrV:4688223-4688303 0.00017 44_[+1]_28 chrV:1364504-1364584 0.00017 47_[+1]_25 chrX:8952132-8952212 0.00019 32_[+1]_40 chrX:3126412-3126492 0.00019 24_[+1]_48 chrIII:6299003-6299083 0.0002 14_[+1]_58 chrI:9801319-9801399 0.00024 12_[+1]_60 chrX:15274216-15274296 0.00029 15_[+1]_57 chrX:13009768-13009848 0.00029 31_[+1]_41 chrX:17419863-17419943 0.00033 47_[+1]_25 chrI:9094948-9095028 0.00033 36_[+1]_36 chrIV:2605883-2605963 0.00039 66_[+1]_6 chrV:4648043-4648123 0.00041 25_[+1]_47 chrIII:10299708-10299788 0.00047 58_[+1]_14 chrII:8742118-8742198 0.00048 67_[+1]_5 chrIV:2553010-2553090 0.00048 4_[+1]_68 chrIV:2765216-2765296 0.00051 1_[+1]_71 chrX:6324847-6324927 0.00051 32_[+1]_40 chrIII:11336211-11336291 0.00058 [+1]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGARAAA width=8 seqs=60 chrX:4391875-4391955 ( 59) GAGAAAAA 1 chrV:4803204-4803284 ( 45) GAGAAAAA 1 chrX:13542796-13542876 ( 72) GAGAAAAA 1 chrI:9799811-9799891 ( 6) GAGAAAAA 1 chrI:6965767-6965847 ( 2) GAGAAAAA 1 chrI:12548150-12548230 ( 13) GAGAAAAA 1 chrI:999223-999303 ( 55) GAGAAAAA 1 chrIII:7387455-7387535 ( 43) GAGAAAAA 1 chrIV:2772452-2772532 ( 46) GAGAAAAA 1 chrII:5276864-5276944 ( 63) GAGAAAAA 1 chrIII:5845672-5845752 ( 8) GAGAGAAA 1 chrIII:3031443-3031523 ( 55) GAGAGAAA 1 chrIII:4656613-4656693 ( 49) GAGAGAAA 1 chrX:4813079-4813159 ( 4) GAGAGAAA 1 chrV:8662374-8662454 ( 68) GAGAGAAA 1 chrV:11802634-11802714 ( 33) GAGAGAAA 1 chrX:13210644-13210724 ( 13) GAGAGAAA 1 chrIV:5100326-5100406 ( 24) GAGAGAAA 1 chrV:10859961-10860041 ( 52) GAGAGAAA 1 chrIV:9918205-9918285 ( 40) AAGAAAAA 1 chrI:13060419-13060499 ( 73) AAGAAAAA 1 chrIII:9826280-9826360 ( 55) AAGAAAAA 1 chrV:1607985-1608065 ( 10) AAGAAAAA 1 chrI:14281884-14281964 ( 29) AAGAAAAA 1 chrI:8308871-8308951 ( 39) AAGAAAAA 1 chrV:10861973-10862053 ( 14) AAGAAAAA 1 chrV:4817891-4817971 ( 44) AAGAAAAA 1 chrV:5027723-5027803 ( 5) AAGAAAAA 1 chrIII:10634797-10634877 ( 55) AAGAAAAA 1 chrX:5982937-5983017 ( 62) AAGAAAAA 1 chrV:11533154-11533234 ( 12) AAGAGAAA 1 chrV:10722064-10722144 ( 38) GAGAAAGA 1 chrIII:13271169-13271249 ( 18) GAAAAAAA 1 chrIV:5081311-5081391 ( 41) GAGAGAGA 1 chrII:6562312-6562392 ( 3) GAAAAAAA 1 chrV:4823879-4823959 ( 56) GAAAAAAA 1 chrIV:5582412-5582492 ( 13) GAGAGAGA 1 chrV:20789296-20789376 ( 48) GAAAAAAA 1 chrV:7437632-7437712 ( 34) GAGAGAGA 1 chrV:12530249-12530329 ( 30) GAAAAAAA 1 chrIV:5586465-5586545 ( 21) GAGAGAGA 1 chrV:13606993-13607073 ( 46) GAGGAAAA 1 chrV:4688223-4688303 ( 45) GAAAGAAA 1 chrV:1364504-1364584 ( 48) GAAAGAAA 1 chrX:8952132-8952212 ( 33) GAGAAAAG 1 chrX:3126412-3126492 ( 25) GAGAAAAG 1 chrIII:6299003-6299083 ( 15) GAGGGAAA 1 chrI:9801319-9801399 ( 13) GAGAGAAG 1 chrX:15274216-15274296 ( 16) AAAAAAAA 1 chrX:13009768-13009848 ( 32) AAGAGAGA 1 chrX:17419863-17419943 ( 48) AAAAGAAA 1 chrI:9094948-9095028 ( 37) AAGGAAAA 1 chrIV:2605883-2605963 ( 67) GCGAAAAA 1 chrV:4648043-4648123 ( 26) AAGGGAAA 1 chrIII:10299708-10299788 ( 59) GCGAGAAA 1 chrII:8742118-8742198 ( 68) GAGAAAGG 1 chrIV:2553010-2553090 ( 5) GAGAAAGG 1 chrIV:2765216-2765296 ( 2) GAGGGAGA 1 chrX:6324847-6324927 ( 33) GAAGAAAA 1 chrIII:11336211-11336291 ( 1) AAAAAAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.95252 E= 4.2e-017 14 -1255 166 -1255 183 -275 -1255 -1255 -57 -1255 188 -1255 172 -1255 -115 -1255 118 -1255 79 -1255 187 -1255 -1255 -1255 161 -1255 -41 -1255 175 -1255 -141 -1255 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 60 E= 4.2e-017 0.300000 0.000000 0.700000 0.000000 0.966667 0.033333 0.000000 0.000000 0.183333 0.000000 0.816667 0.000000 0.900000 0.000000 0.100000 0.000000 0.616667 0.000000 0.383333 0.000000 1.000000 0.000000 0.000000 0.000000 0.833333 0.000000 0.166667 0.000000 0.916667 0.000000 0.083333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGARAAA MEME-1 regular expression -------------------------------------------------------------------------------- [GA]AGA[AG]AAA -------------------------------------------------------------------------------- Time 4.91 secs. ******************************************************************************** ******************************************************************************** MOTIF YTYTTTYT MEME-2 width = 8 sites = 85 llr = 588 E-value = 2.9e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTYTTTYT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :3:::::: pos.-specific C 6:532:6: probability G :::::::: matrix T 47578a4a bits 2.2 2.0 1.7 * * 1.5 * * Relative 1.3 * * Entropy 1.1 ******** (10.0 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTTTTTCT consensus TACCC T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTYTTTYT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:6415314-6415394 44 2.00e-05 CAAGCTTGTG CTCTTTCT AATAGGGAAG chrV:11533154-11533234 59 2.00e-05 CCTCCACTCA CTCTTTCT ATGGCGCTGG chrX:4662573-4662653 35 2.00e-05 ttgtttcttt ctctttct ctattcctct chrIV:6958804-6958884 52 2.00e-05 CAACAtcttc ctctttct ctctctttct chrV:6346268-6346348 41 2.00e-05 GATGGTCCTC CTCTTTCT CTCTCCTTCG chrV:10473139-10473219 37 4.49e-05 CTATCTTCTT CTTTTTCT CTTTCCTTCC chrV:12529021-12529101 21 4.49e-05 GGCATACTCT CTTTTTCT GTTTTTCTAT chrX:3535703-3535783 42 4.49e-05 TTTGCATCTC CTTTTTCT CGTTTTTCTT chrI:9962914-9962994 52 4.49e-05 TTTCCCTCTT CTTTTTCT TTTCGTGCGT chrX:15566846-15566926 63 4.49e-05 CGCctccttc ctttttct tttttccttc chrV:8452145-8452225 32 8.58e-05 TGTTTCATTT TTCTTTCT ATCCATTCTT chrIV:4469356-4469436 60 8.58e-05 AAATGGTTCT TTCTTTCT GGACGCGTGC chrX:2673579-2673659 25 8.58e-05 GACGCTCCGC CTCCTTCT GGGCGAGGGA chrV:10867737-10867817 27 8.58e-05 TCATCATCGT TTCTTTCT TTCCGTTGAA chrII:10542846-10542926 59 8.58e-05 GTACACGGGC TTCTTTCT GTGGGGTTCT chrX:11469779-11469859 62 8.58e-05 GTGCGGTCGA TTCTTTCT ATGCgtgtgt chrV:6356224-6356304 61 8.58e-05 TACGTTGTCT TTCTTTCT GATTTTTTGA chrX:8952132-8952212 17 1.37e-04 AAGGAGCTCA CTTCTTCT AGAAAATAGA chrIII:3864364-3864444 5 1.37e-04 tcct ttttttct ttctattttc chrI:7578729-7578809 32 1.37e-04 ACTATTTTTC TTTTTTCT GGATGAAGCT chrIV:3163702-3163782 71 1.37e-04 TGGTCCTGTC cttcttct tc chrV:12539489-12539569 53 1.37e-04 TACTGACTCA TTTTTTCT TCATAATGTA chrX:13542796-13542876 43 1.37e-04 TCTTCTTTTA TTTTTTCT TTGGTTCCGT chrX:17519633-17519713 1 1.37e-04 . ttttttct tcttcttttt chrV:8663159-8663239 39 1.37e-04 TGCCGCTCTG TTTTTTCT CTGATCCTCT chrII:3961422-3961502 5 1.37e-04 tctt cttcttct tcgctgcgtc chrIV:15696939-15697019 30 1.37e-04 TCTTTTTATT TTTTTTCT ACATCATAGG chrV:10677630-10677710 67 1.37e-04 TCTCTCGCCt cttcttct ccttct chrX:13210644-13210724 68 1.37e-04 TTTTTTTTTC TTTTTTCT TACTC chrI:13417481-13417561 23 1.37e-04 cttcctccct cttcttct ctacatcttc chrV:1157637-1157717 5 1.37e-04 CTGG CTTCTTCT TTTCCCACTT chrIII:3030005-3030085 53 1.37e-04 tcatcatcgt cttcttct atttcttttc chrV:10681404-10681484 59 1.62e-04 CTTTTCGCTC CTCTTTTT ATACGCGGCA chrI:8308871-8308951 63 1.62e-04 ATATATATGT CTCTTTTT TGAGGTGTAA chrX:8986532-8986612 18 2.12e-04 TCTATCTTCT CTTTTTTT CGCTTTGCAT chrIV:8793351-8793431 30 2.12e-04 TAGCCAGTGT CTTTTTTT TTCGAGAATT chrI:12044103-12044183 22 2.12e-04 CGGGCAAAAT CTTTTTTT ACACTGAATT chrV:10477282-10477362 37 2.12e-04 ATTTCATAAC CTTTTTTT ATCTCGTGAA chrV:4775277-4775357 28 2.12e-04 TGCAAAATCT CTTTTTTT TTCACTGGAT chrV:4190354-4190434 9 2.56e-04 gaaaatga cattttct ggcaaatcgg chrX:9550055-9550135 73 2.56e-04 TTTTTATGGT TTCCTTCT chrX:6134749-6134829 70 2.56e-04 TGTTTTGTTT CATTTTCT TTA chrIV:10341954-10342034 3 2.56e-04 CA TTCCTTCT GTGACGTCTT chrIII:11336211-11336291 39 2.97e-04 Gtctctcact ctctctct ctATTCACAT chrV:10717467-10717547 10 2.97e-04 TTCGTGTCA TTTCTTCT CCAGCTGGGT chrI:10407565-10407645 38 3.17e-04 AAACCGGTCC CTTTCTCT GATTCTCTGA chrX:11472162-11472242 8 3.68e-04 ATTGAGT CTCCTTTT CATCTAGTCC chrV:13908732-13908812 60 3.68e-04 CTCCCATCTT TTCTTTTT GTTAAGTGAA chrV:14847483-14847563 69 3.68e-04 TATTTTGTTT TTCTTTTT GTTG chrV:10838366-10838446 52 3.68e-04 GCAATTAATT TTCTTTTT TGTTGATCCT chrV:10468509-10468589 59 4.72e-04 GACAAGGGAA CACCTTCT ACCGCTTCAC chrIV:1867003-1867083 10 4.72e-04 TTTCACTGT TTTTTTTT CACTTTTTTC chrX:15604185-15604265 34 4.72e-04 ttaaaaccgt tttttttt gaattttttc chrIII:6123823-6123903 59 4.72e-04 TTTCGTTCCT CACCTTCT CTTCCTAATT chrII:10546034-10546114 44 5.22e-04 GCCCACCGCG CATCTTCT CCATAACCAG chrX:5628661-5628741 17 5.22e-04 AAGACACAAA TATTTTCT GAGAAGAGTC chrIII:7580769-7580849 52 5.22e-04 TCCCTACTGA CATCTTCT CAGTTTTCCG chrV:726232-726312 55 5.54e-04 CGGTTCCCAC TTCTCTCT GATGCTTTAC chrX:17419863-17419943 9 5.54e-04 GATAATAC TTCTCTCT GACACTGTCT chrX:4899792-4899872 9 5.54e-04 TGCAATCT CTCCCTCT TCAACATTCA chrV:5832918-5832998 16 6.19e-04 TCTCGCCTCG CTTCCTCT TTGCCCATTC chrIV:1168705-1168785 56 6.19e-04 CCTTTCGTTT CACTTTTT TAGTGCATTA chrV:2133739-2133819 22 6.19e-04 TGCGCTTTAC TTTTCTCT ACTCCCCGCT chrI:13060419-13060499 57 6.19e-04 ACGCGTGAAT CACTTTTT CGAAACGGAA chrIII:7737024-7737104 29 6.75e-04 CCTGGAAGCG CATTTTTT ATTGCATCCG chrIV:13178003-13178083 9 6.75e-04 TCCACTTT TTCCTTTT CCATTTTTCT chrIII:10337604-10337684 45 6.75e-04 AGGAAAATAT CATTTTTT AATATAATGA chrII:9597891-9597971 22 6.75e-04 CGACGAGCAC CATTTTTT GTTGCGACTC chrV:10944536-10944616 68 6.75e-04 TTACTCTAAA CATTTTTT CAAAT chrX:13207018-13207098 13 6.75e-04 CATCCGTACG CATTTTTT TGTTATCTTG chrV:10722263-10722343 24 7.45e-04 CTTTCTTCAA TTTCTTTT AGCTTTCACT chrV:729018-729098 68 7.45e-04 AAATTCAGGT TTTCTTTT AACTA chrX:13739581-13739661 64 8.45e-04 CGCGCCCCGT CATTCTCT CGTCTAGCC chrV:5018251-5018331 52 9.15e-04 AACATTTTCA CACCTTTT CATATAAATA chrV:1156286-1156366 57 9.15e-04 AAATTGCCGG TACTTTTT TAAATTCTGA chrII:6890298-6890378 18 1.02e-03 GGAATGCTAC TTCTCTTT CATCTCTGAA chrV:4653247-4653327 4 1.02e-03 GGG CTCCCTTT GGTCCTGGTG chrII:6707600-6707680 62 1.10e-03 TCGTCTCTCG TACTCTCT TCAACTCGGG chrIII:8287703-8287783 16 1.10e-03 TCGACATCGC CACCCTCT CTGATGCTTC chrV:2134443-2134523 66 1.10e-03 TCTAAAAAGA TACTCTCT GGCTCGC chrII:4456198-4456278 29 1.10e-03 AGGCTCCTAC TACTCTCT GTGTCTCTTG chrV:10729627-10729707 21 1.10e-03 TATGATAATA CACCCTCT CTAGGGCCAC chrI:9801319-9801399 29 1.21e-03 AGGAGAAGAG TATCTTTT TGACGACAGC chrV:5404058-5404138 11 1.21e-03 TTAGCTAGGT CACTCTTT TGATTTCTTG chrII:7319686-7319766 12 1.26e-03 TCATTTCCGG TTCCCTTT TCTCCCATGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTYTTTYT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:6415314-6415394 2e-05 43_[+2]_29 chrV:11533154-11533234 2e-05 58_[+2]_14 chrX:4662573-4662653 2e-05 34_[+2]_38 chrIV:6958804-6958884 2e-05 51_[+2]_21 chrV:6346268-6346348 2e-05 40_[+2]_32 chrV:10473139-10473219 4.5e-05 36_[+2]_36 chrV:12529021-12529101 4.5e-05 20_[+2]_52 chrX:3535703-3535783 4.5e-05 41_[+2]_31 chrI:9962914-9962994 4.5e-05 51_[+2]_21 chrX:15566846-15566926 4.5e-05 62_[+2]_10 chrV:8452145-8452225 8.6e-05 31_[+2]_41 chrIV:4469356-4469436 8.6e-05 59_[+2]_13 chrX:2673579-2673659 8.6e-05 24_[+2]_48 chrV:10867737-10867817 8.6e-05 26_[+2]_46 chrII:10542846-10542926 8.6e-05 58_[+2]_14 chrX:11469779-11469859 8.6e-05 61_[+2]_11 chrV:6356224-6356304 8.6e-05 60_[+2]_12 chrX:8952132-8952212 0.00014 16_[+2]_56 chrIII:3864364-3864444 0.00014 4_[+2]_68 chrI:7578729-7578809 0.00014 31_[+2]_41 chrIV:3163702-3163782 0.00014 70_[+2]_2 chrV:12539489-12539569 0.00014 52_[+2]_20 chrX:13542796-13542876 0.00014 42_[+2]_30 chrX:17519633-17519713 0.00014 [+2]_72 chrV:8663159-8663239 0.00014 38_[+2]_34 chrII:3961422-3961502 0.00014 4_[+2]_68 chrIV:15696939-15697019 0.00014 29_[+2]_43 chrV:10677630-10677710 0.00014 66_[+2]_6 chrX:13210644-13210724 0.00014 67_[+2]_5 chrI:13417481-13417561 0.00014 22_[+2]_50 chrV:1157637-1157717 0.00014 4_[+2]_68 chrIII:3030005-3030085 0.00014 52_[+2]_20 chrV:10681404-10681484 0.00016 58_[+2]_14 chrI:8308871-8308951 0.00016 62_[+2]_10 chrX:8986532-8986612 0.00021 17_[+2]_55 chrIV:8793351-8793431 0.00021 29_[+2]_43 chrI:12044103-12044183 0.00021 21_[+2]_51 chrV:10477282-10477362 0.00021 36_[+2]_36 chrV:4775277-4775357 0.00021 27_[+2]_45 chrV:4190354-4190434 0.00026 8_[+2]_64 chrX:9550055-9550135 0.00026 72_[+2] chrX:6134749-6134829 0.00026 69_[+2]_3 chrIV:10341954-10342034 0.00026 2_[+2]_70 chrIII:11336211-11336291 0.0003 38_[+2]_34 chrV:10717467-10717547 0.0003 9_[+2]_63 chrI:10407565-10407645 0.00032 37_[+2]_35 chrX:11472162-11472242 0.00037 7_[+2]_65 chrV:13908732-13908812 0.00037 59_[+2]_13 chrV:14847483-14847563 0.00037 68_[+2]_4 chrV:10838366-10838446 0.00037 51_[+2]_21 chrV:10468509-10468589 0.00047 58_[+2]_14 chrIV:1867003-1867083 0.00047 9_[+2]_63 chrX:15604185-15604265 0.00047 33_[+2]_39 chrIII:6123823-6123903 0.00047 58_[+2]_14 chrII:10546034-10546114 0.00052 43_[+2]_29 chrX:5628661-5628741 0.00052 16_[+2]_56 chrIII:7580769-7580849 0.00052 51_[+2]_21 chrV:726232-726312 0.00055 54_[+2]_18 chrX:17419863-17419943 0.00055 8_[+2]_64 chrX:4899792-4899872 0.00055 8_[+2]_64 chrV:5832918-5832998 0.00062 15_[+2]_57 chrIV:1168705-1168785 0.00062 55_[+2]_17 chrV:2133739-2133819 0.00062 21_[+2]_51 chrI:13060419-13060499 0.00062 56_[+2]_16 chrIII:7737024-7737104 0.00067 28_[+2]_44 chrIV:13178003-13178083 0.00067 8_[+2]_64 chrIII:10337604-10337684 0.00067 44_[+2]_28 chrII:9597891-9597971 0.00067 21_[+2]_51 chrV:10944536-10944616 0.00067 67_[+2]_5 chrX:13207018-13207098 0.00067 12_[+2]_60 chrV:10722263-10722343 0.00075 23_[+2]_49 chrV:729018-729098 0.00075 67_[+2]_5 chrX:13739581-13739661 0.00085 63_[+2]_9 chrV:5018251-5018331 0.00091 51_[+2]_21 chrV:1156286-1156366 0.00091 56_[+2]_16 chrII:6890298-6890378 0.001 17_[+2]_55 chrV:4653247-4653327 0.001 3_[+2]_69 chrII:6707600-6707680 0.0011 61_[+2]_11 chrIII:8287703-8287783 0.0011 15_[+2]_57 chrV:2134443-2134523 0.0011 65_[+2]_7 chrII:4456198-4456278 0.0011 28_[+2]_44 chrV:10729627-10729707 0.0011 20_[+2]_52 chrI:9801319-9801399 0.0012 28_[+2]_44 chrV:5404058-5404138 0.0012 10_[+2]_62 chrII:7319686-7319766 0.0013 11_[+2]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTYTTTYT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTYTTTYT width=8 seqs=85 chrIII:6415314-6415394 ( 44) CTCTTTCT 1 chrV:11533154-11533234 ( 59) CTCTTTCT 1 chrX:4662573-4662653 ( 35) CTCTTTCT 1 chrIV:6958804-6958884 ( 52) CTCTTTCT 1 chrV:6346268-6346348 ( 41) CTCTTTCT 1 chrV:10473139-10473219 ( 37) CTTTTTCT 1 chrV:12529021-12529101 ( 21) CTTTTTCT 1 chrX:3535703-3535783 ( 42) CTTTTTCT 1 chrI:9962914-9962994 ( 52) CTTTTTCT 1 chrX:15566846-15566926 ( 63) CTTTTTCT 1 chrV:8452145-8452225 ( 32) TTCTTTCT 1 chrIV:4469356-4469436 ( 60) TTCTTTCT 1 chrX:2673579-2673659 ( 25) CTCCTTCT 1 chrV:10867737-10867817 ( 27) TTCTTTCT 1 chrII:10542846-10542926 ( 59) TTCTTTCT 1 chrX:11469779-11469859 ( 62) TTCTTTCT 1 chrV:6356224-6356304 ( 61) TTCTTTCT 1 chrX:8952132-8952212 ( 17) CTTCTTCT 1 chrIII:3864364-3864444 ( 5) TTTTTTCT 1 chrI:7578729-7578809 ( 32) TTTTTTCT 1 chrIV:3163702-3163782 ( 71) CTTCTTCT 1 chrV:12539489-12539569 ( 53) TTTTTTCT 1 chrX:13542796-13542876 ( 43) TTTTTTCT 1 chrX:17519633-17519713 ( 1) TTTTTTCT 1 chrV:8663159-8663239 ( 39) TTTTTTCT 1 chrII:3961422-3961502 ( 5) CTTCTTCT 1 chrIV:15696939-15697019 ( 30) TTTTTTCT 1 chrV:10677630-10677710 ( 67) CTTCTTCT 1 chrX:13210644-13210724 ( 68) TTTTTTCT 1 chrI:13417481-13417561 ( 23) CTTCTTCT 1 chrV:1157637-1157717 ( 5) CTTCTTCT 1 chrIII:3030005-3030085 ( 53) CTTCTTCT 1 chrV:10681404-10681484 ( 59) CTCTTTTT 1 chrI:8308871-8308951 ( 63) CTCTTTTT 1 chrX:8986532-8986612 ( 18) CTTTTTTT 1 chrIV:8793351-8793431 ( 30) CTTTTTTT 1 chrI:12044103-12044183 ( 22) CTTTTTTT 1 chrV:10477282-10477362 ( 37) CTTTTTTT 1 chrV:4775277-4775357 ( 28) CTTTTTTT 1 chrV:4190354-4190434 ( 9) CATTTTCT 1 chrX:9550055-9550135 ( 73) TTCCTTCT 1 chrX:6134749-6134829 ( 70) CATTTTCT 1 chrIV:10341954-10342034 ( 3) TTCCTTCT 1 chrIII:11336211-11336291 ( 39) CTCTCTCT 1 chrV:10717467-10717547 ( 10) TTTCTTCT 1 chrI:10407565-10407645 ( 38) CTTTCTCT 1 chrX:11472162-11472242 ( 8) CTCCTTTT 1 chrV:13908732-13908812 ( 60) TTCTTTTT 1 chrV:14847483-14847563 ( 69) TTCTTTTT 1 chrV:10838366-10838446 ( 52) TTCTTTTT 1 chrV:10468509-10468589 ( 59) CACCTTCT 1 chrIV:1867003-1867083 ( 10) TTTTTTTT 1 chrX:15604185-15604265 ( 34) TTTTTTTT 1 chrIII:6123823-6123903 ( 59) CACCTTCT 1 chrII:10546034-10546114 ( 44) CATCTTCT 1 chrX:5628661-5628741 ( 17) TATTTTCT 1 chrIII:7580769-7580849 ( 52) CATCTTCT 1 chrV:726232-726312 ( 55) TTCTCTCT 1 chrX:17419863-17419943 ( 9) TTCTCTCT 1 chrX:4899792-4899872 ( 9) CTCCCTCT 1 chrV:5832918-5832998 ( 16) CTTCCTCT 1 chrIV:1168705-1168785 ( 56) CACTTTTT 1 chrV:2133739-2133819 ( 22) TTTTCTCT 1 chrI:13060419-13060499 ( 57) CACTTTTT 1 chrIII:7737024-7737104 ( 29) CATTTTTT 1 chrIV:13178003-13178083 ( 9) TTCCTTTT 1 chrIII:10337604-10337684 ( 45) CATTTTTT 1 chrII:9597891-9597971 ( 22) CATTTTTT 1 chrV:10944536-10944616 ( 68) CATTTTTT 1 chrX:13207018-13207098 ( 13) CATTTTTT 1 chrV:10722263-10722343 ( 24) TTTCTTTT 1 chrV:729018-729098 ( 68) TTTCTTTT 1 chrX:13739581-13739661 ( 64) CATTCTCT 1 chrV:5018251-5018331 ( 52) CACCTTTT 1 chrV:1156286-1156366 ( 57) TACTTTTT 1 chrII:6890298-6890378 ( 18) TTCTCTTT 1 chrV:4653247-4653327 ( 4) CTCCCTTT 1 chrII:6707600-6707680 ( 62) TACTCTCT 1 chrIII:8287703-8287783 ( 16) CACCCTCT 1 chrV:2134443-2134523 ( 66) TACTCTCT 1 chrII:4456198-4456278 ( 29) TACTCTCT 1 chrV:10729627-10729707 ( 21) CACCCTCT 1 chrI:9801319-9801399 ( 29) TATCTTTT 1 chrV:5404058-5404138 ( 11) CACTCTTT 1 chrII:7319686-7319766 ( 12) TTCCCTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTYTTTYT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.25601 E= 2.9e-007 -1305 136 -1305 59 5 -1305 -1305 135 -1305 107 -1305 91 -1305 50 -1305 128 -1305 -17 -1305 151 -1305 -1305 -1305 183 -1305 153 -1305 33 -1305 -1305 -1305 183 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTYTTTYT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 85 E= 2.9e-007 0.000000 0.576471 0.000000 0.423529 0.282353 0.000000 0.000000 0.717647 0.000000 0.470588 0.000000 0.529412 0.000000 0.317647 0.000000 0.682353 0.000000 0.200000 0.000000 0.800000 0.000000 0.000000 0.000000 1.000000 0.000000 0.647059 0.000000 0.352941 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTYTTTYT MEME-2 regular expression -------------------------------------------------------------------------------- [CT][TA][TC][TC][TC]T[CT]T -------------------------------------------------------------------------------- Time 8.57 secs. ******************************************************************************** ******************************************************************************** MOTIF TGCGTCTC MEME-3 width = 8 sites = 11 llr = 119 E-value = 1.7e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 3:a::a:a probability G :a:a:::: matrix T 7:::a:a: bits 2.2 *** * * 2.0 *** * * 1.7 ******* 1.5 ******* Relative 1.3 ******* Entropy 1.1 ******** (15.5 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGCGTCTC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:6707600-6707680 43 1.25e-05 CCGCCGTATC TGCGTCTC TTCGTCTCTC chrV:10681404-10681484 29 1.25e-05 CACATACACA TGCGTCTC AGTCCGTCGT chrIII:4656613-4656693 19 1.25e-05 CAAAATATTC TGCGTCTC GTACGATGAG chrII:6993102-6993182 12 1.25e-05 GTTTCATCTC TGCGTCTC GTTCACCCAT chrII:3961422-3961502 17 1.25e-05 tcttcttcgc tgcgtctc ttctatctca chrII:2962724-2962804 2 1.25e-05 C TGCGTCTC CGGTGTCGTC chrV:19611795-19611875 18 1.25e-05 gcaggcaccc tgcgtctc tcccctctca chrIII:3807767-3807847 7 1.25e-05 CACTTC TGCGTCTC GGCGCGTTCA chrV:14366708-14366788 1 2.24e-05 . CGCGTCTC CCGCGCGTCA chrV:4131661-4131741 36 2.24e-05 TCTAACCTCC CGCGTCTC CACATTCAAT chrV:6355280-6355360 41 2.24e-05 AACCGTTCTT CGCGTCTC GCAGTCTGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:6707600-6707680 1.2e-05 42_[+3]_30 chrV:10681404-10681484 1.2e-05 28_[+3]_44 chrIII:4656613-4656693 1.2e-05 18_[+3]_54 chrII:6993102-6993182 1.2e-05 11_[+3]_61 chrII:3961422-3961502 1.2e-05 16_[+3]_56 chrII:2962724-2962804 1.2e-05 1_[+3]_71 chrV:19611795-19611875 1.2e-05 17_[+3]_55 chrIII:3807767-3807847 1.2e-05 6_[+3]_66 chrV:14366708-14366788 2.2e-05 [+3]_72 chrV:4131661-4131741 2.2e-05 35_[+3]_37 chrV:6355280-6355360 2.2e-05 40_[+3]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGCGTCTC width=8 seqs=11 chrII:6707600-6707680 ( 43) TGCGTCTC 1 chrV:10681404-10681484 ( 29) TGCGTCTC 1 chrIII:4656613-4656693 ( 19) TGCGTCTC 1 chrII:6993102-6993182 ( 12) TGCGTCTC 1 chrII:3961422-3961502 ( 17) TGCGTCTC 1 chrII:2962724-2962804 ( 2) TGCGTCTC 1 chrV:19611795-19611875 ( 18) TGCGTCTC 1 chrIII:3807767-3807847 ( 7) TGCGTCTC 1 chrV:14366708-14366788 ( 1) CGCGTCTC 1 chrV:4131661-4131741 ( 36) CGCGTCTC 1 chrV:6355280-6355360 ( 41) CGCGTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.0506 E= 1.7e+000 -1010 28 -1010 137 -1010 -1010 217 -1010 -1010 215 -1010 -1010 -1010 -1010 217 -1010 -1010 -1010 -1010 183 -1010 215 -1010 -1010 -1010 -1010 -1010 183 -1010 215 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.7e+000 0.000000 0.272727 0.000000 0.727273 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGCGTCTC MEME-3 regular expression -------------------------------------------------------------------------------- [TC]GCGTCTC -------------------------------------------------------------------------------- Time 12.16 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGRGGGG MEME-4 width = 8 sites = 8 llr = 88 E-value = 7.8e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGRGGGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::5:::: pos.-specific C :::1:::: probability G aaa4aaaa matrix T :::::::: bits 2.2 *** **** 2.0 *** **** 1.7 *** **** 1.5 *** **** Relative 1.3 *** **** Entropy 1.1 *** **** (15.8 bits) 0.9 *** **** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGGAGGGG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGRGGGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:4151459-4151539 12 7.25e-06 GGTGAAGAGC GGGAGGGG CCCTCAGGCG chrX:15274216-15274296 32 7.25e-06 AATGGAAAGT GGGAGGGG AACGACAGAA chrX:3535703-3535783 14 7.25e-06 ATTCAGTAGA GGGAGGGG GCAGTGCACT chrII:1236704-1236784 29 7.25e-06 TGGGTGGGAA GGGAGGGG TGTTTGTTGT chrX:4391875-4391955 73 1.32e-05 AAAAGGAGAA GGGGGGGG chrX:8017414-8017494 1 1.32e-05 . GGGGGGGG AGCTGCTCGG chrIV:2772452-2772532 38 1.32e-05 AGGGTCACAT GGGGGGGG GAGAAAAATC chrX:8952132-8952212 54 1.91e-05 AGGGACCATG GGGCGGGG AGAGCTGGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGRGGGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:4151459-4151539 7.3e-06 11_[+4]_61 chrX:15274216-15274296 7.3e-06 31_[+4]_41 chrX:3535703-3535783 7.3e-06 13_[+4]_59 chrII:1236704-1236784 7.3e-06 28_[+4]_44 chrX:4391875-4391955 1.3e-05 72_[+4] chrX:8017414-8017494 1.3e-05 [+4]_72 chrIV:2772452-2772532 1.3e-05 37_[+4]_35 chrX:8952132-8952212 1.9e-05 53_[+4]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGRGGGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGRGGGG width=8 seqs=8 chrX:4151459-4151539 ( 12) GGGAGGGG 1 chrX:15274216-15274296 ( 32) GGGAGGGG 1 chrX:3535703-3535783 ( 14) GGGAGGGG 1 chrII:1236704-1236784 ( 29) GGGAGGGG 1 chrX:4391875-4391955 ( 73) GGGGGGGG 1 chrX:8017414-8017494 ( 1) GGGGGGGG 1 chrIV:2772452-2772532 ( 38) GGGGGGGG 1 chrX:8952132-8952212 ( 54) GGGCGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGRGGGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 12.4773 E= 7.8e+001 -965 -965 217 -965 -965 -965 217 -965 -965 -965 217 -965 87 -84 76 -965 -965 -965 217 -965 -965 -965 217 -965 -965 -965 217 -965 -965 -965 217 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGRGGGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 7.8e+001 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.125000 0.375000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGRGGGG MEME-4 regular expression -------------------------------------------------------------------------------- GGG[AG]GGGG -------------------------------------------------------------------------------- Time 15.93 secs. ******************************************************************************** ******************************************************************************** MOTIF GCAYTTTT MEME-5 width = 8 sites = 16 llr = 151 E-value = 1.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAYTTTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::a::::: pos.-specific C 3a:4:::: probability G 7::::::: matrix T :::6aaaa bits 2.2 * 2.0 ** 1.7 ** **** 1.5 ** **** Relative 1.3 *** **** Entropy 1.1 ******** (13.6 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCATTTTT consensus C C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAYTTTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:8986532-8986612 32 4.30e-05 TTTTCGCTTT GCATTTTT TTACCCGCAC chrV:14366708-14366788 24 4.30e-05 CGTCAGGGAT GCACTTTT ATAAAAGTAC chrX:17519633-17519713 26 4.30e-05 tttTCCCATT GCATTTTT CTTCCCTTCA chrX:12405001-12405081 30 4.30e-05 CCACATTTCA GCACTTTT GATTCAAATG chrX:3535703-3535783 27 4.30e-05 AGGGGGCAGT GCACTTTT GCATCTCCTT chrIV:5582412-5582492 45 4.30e-05 ACATTGGTCT GCACTTTT AGGCCCTCGG chrV:14847483-14847563 11 4.30e-05 CAGGTGATGA GCATTTTT GCTTTCTCTC chrI:8308871-8308951 29 4.30e-05 TGCCACAGAA GCATTTTT CAAAGAAAAA chrX:4896041-4896121 59 4.30e-05 ACGTACAATC GCACTTTT GATCCATTGC chrX:5653950-5654030 49 4.30e-05 AAAAATGTTT GCACTTTT AACAAGAACA chrV:12530249-12530329 2 4.30e-05 T GCACTTTT ACGAAGTGGA chrX:9214094-9214174 67 8.66e-05 AGCCGATCGA CCATTTTT AGTTTG chrIV:13178003-13178083 17 8.66e-05 TTTTCCTTTT CCATTTTT CTGACATACT chrV:10478420-10478500 15 8.66e-05 CCAAGCCCTT CCATTTTT CCGTTCCGTA chrV:6346268-6346348 60 8.66e-05 TCTCCTTCGT CCAttttt tttctcgttt chrV:4775277-4775357 51 8.66e-05 TGGATTACTT CCATTTTT GGCAACTTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAYTTTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:8986532-8986612 4.3e-05 31_[+5]_41 chrV:14366708-14366788 4.3e-05 23_[+5]_49 chrX:17519633-17519713 4.3e-05 25_[+5]_47 chrX:12405001-12405081 4.3e-05 29_[+5]_43 chrX:3535703-3535783 4.3e-05 26_[+5]_46 chrIV:5582412-5582492 4.3e-05 44_[+5]_28 chrV:14847483-14847563 4.3e-05 10_[+5]_62 chrI:8308871-8308951 4.3e-05 28_[+5]_44 chrX:4896041-4896121 4.3e-05 58_[+5]_14 chrX:5653950-5654030 4.3e-05 48_[+5]_24 chrV:12530249-12530329 4.3e-05 1_[+5]_71 chrX:9214094-9214174 8.7e-05 66_[+5]_6 chrIV:13178003-13178083 8.7e-05 16_[+5]_56 chrV:10478420-10478500 8.7e-05 14_[+5]_58 chrV:6346268-6346348 8.7e-05 59_[+5]_13 chrV:4775277-4775357 8.7e-05 50_[+5]_22 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAYTTTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAYTTTT width=8 seqs=16 chrX:8986532-8986612 ( 32) GCATTTTT 1 chrV:14366708-14366788 ( 24) GCACTTTT 1 chrX:17519633-17519713 ( 26) GCATTTTT 1 chrX:12405001-12405081 ( 30) GCACTTTT 1 chrX:3535703-3535783 ( 27) GCACTTTT 1 chrIV:5582412-5582492 ( 45) GCACTTTT 1 chrV:14847483-14847563 ( 11) GCATTTTT 1 chrI:8308871-8308951 ( 29) GCATTTTT 1 chrX:4896041-4896121 ( 59) GCACTTTT 1 chrX:5653950-5654030 ( 49) GCACTTTT 1 chrV:12530249-12530329 ( 2) GCACTTTT 1 chrX:9214094-9214174 ( 67) CCATTTTT 1 chrIV:13178003-13178083 ( 17) CCATTTTT 1 chrV:10478420-10478500 ( 15) CCATTTTT 1 chrV:6346268-6346348 ( 60) CCATTTTT 1 chrV:4775277-4775357 ( 51) CCATTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAYTTTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8918 E= 1.4e+003 -1064 48 163 -1064 -1064 215 -1064 -1064 187 -1064 -1064 -1064 -1064 96 -1064 100 -1064 -1064 -1064 183 -1064 -1064 -1064 183 -1064 -1064 -1064 183 -1064 -1064 -1064 183 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAYTTTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 1.4e+003 0.000000 0.312500 0.687500 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.437500 0.000000 0.562500 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAYTTTT MEME-5 regular expression -------------------------------------------------------------------------------- [GC]CA[TC]TTTT -------------------------------------------------------------------------------- Time 19.39 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:5409086-5409166 5.94e-01 80 chrV:4775277-4775357 3.25e-02 50_[+5(8.66e-05)]_22 chrV:6356224-6356304 2.17e-02 39_[+5(8.66e-05)]_13_[+2(8.58e-05)]_\ 12 chrV:5404058-5404138 3.15e-01 80 chrV:10393896-10393976 1.00e+00 80 chrIV:5586465-5586545 2.23e-01 80 chrIII:3030005-3030085 1.62e-01 80 chrV:6350256-6350336 4.13e-01 80 chrV:5410820-5410900 6.57e-01 80 chrX:5982937-5983017 3.73e-01 54_[+1(6.21e-05)]_18 chrIII:5897635-5897715 7.53e-01 80 chrV:729018-729098 2.84e-01 80 chrX:13207018-13207098 8.48e-03 11_[+5(4.30e-05)]_61 chrII:9645368-9645448 5.62e-01 80 chrV:1156286-1156366 1.75e-01 80 chrV:10857328-10857408 5.70e-01 80 chrIII:12942469-12942549 5.47e-01 80 chrV:10714809-10714889 9.00e-01 80 chrV:1157637-1157717 7.66e-02 80 chrX:13009768-13009848 2.55e-01 80 chrV:627318-627398 3.20e-01 80 chrV:1154934-1155014 5.83e-01 80 chrIII:10634797-10634877 2.91e-01 54_[+1(6.21e-05)]_18 chrV:5527957-5528037 8.40e-01 80 chrV:12530249-12530329 1.23e-02 1_[+5(4.30e-05)]_71 chrII:5276864-5276944 6.65e-02 62_[+1(2.04e-05)]_10 chrI:9094948-9095028 2.53e-01 80 chrV:4689419-4689499 9.77e-01 80 chrV:10887726-10887806 5.68e-01 80 chrIII:4070357-4070437 7.88e-01 80 chrX:15566846-15566926 9.79e-02 62_[+2(4.49e-05)]_10 chrV:4825551-4825631 6.17e-01 80 chrII:7319686-7319766 2.82e-01 80 chrIV:2772452-2772532 1.47e-03 37_[+4(1.32e-05)]_[+1(2.04e-05)]_16_\ [+1(2.04e-05)]_3 chrX:8017414-8017494 1.73e-02 [+4(1.32e-05)]_72 chrV:10859961-10860041 4.65e-02 51_[+1(3.70e-05)]_21 chrV:10722064-10722144 2.48e-02 37_[+1(9.91e-05)]_35 chrX:13739581-13739661 9.60e-04 80 chrIV:5100326-5100406 1.14e-01 23_[+1(3.70e-05)]_49 chrV:2275382-2275462 8.77e-01 80 chrV:10711867-10711947 9.91e-01 80 chrV:5027723-5027803 4.94e-03 4_[+1(6.21e-05)]_68 chrV:10838366-10838446 2.01e-01 80 chrV:13783329-13783409 6.36e-01 80 chrIV:10341954-10342034 4.05e-02 80 chrV:6351273-6351353 7.88e-01 80 chrV:5475810-5475890 9.98e-01 80 chrX:4899792-4899872 6.95e-02 80 chrV:10717467-10717547 1.25e-01 80 chrV:4653247-4653327 4.94e-01 80 chrI:13417481-13417561 2.18e-01 80 chrV:4730241-4730321 7.31e-01 80 chrIII:7387455-7387535 1.67e-01 42_[+1(2.04e-05)]_30 chrX:5653950-5654030 4.00e-02 48_[+5(4.30e-05)]_24 chrX:6324847-6324927 6.02e-01 80 chrII:6849463-6849543 4.22e-01 80 chrII:14607262-14607342 8.97e-01 80 chrV:6346268-6346348 6.80e-03 40_[+2(2.00e-05)]_11_[+5(8.66e-05)]_\ 13 chrI:999223-999303 4.35e-02 54_[+1(2.04e-05)]_18 chrV:10944536-10944616 4.72e-02 80 chrX:13210644-13210724 2.91e-03 12_[+1(3.70e-05)]_60 chrII:11617874-11617954 4.16e-01 80 chrX:4896041-4896121 1.85e-01 58_[+5(4.30e-05)]_14 chrX:11469779-11469859 1.72e-01 61_[+2(8.58e-05)]_11 chrIII:8685739-8685819 5.30e-01 80 chrIV:661168-661248 7.20e-01 80 chrII:10542846-10542926 8.29e-03 58_[+2(8.58e-05)]_14 chrV:727727-727807 5.51e-01 80 chrV:7437632-7437712 1.32e-01 80 chrIII:8978888-8978968 7.40e-01 80 chrIV:1458392-1458472 8.97e-01 80 chrV:4817891-4817971 1.82e-01 43_[+1(6.21e-05)]_29 chrV:4647471-4647551 1.84e-01 80 chrV:10861973-10862053 4.27e-02 13_[+1(6.21e-05)]_59 chrV:20789296-20789376 2.82e-01 80 chrIII:6123823-6123903 1.27e-01 80 chrI:12548150-12548230 1.57e-01 12_[+1(2.04e-05)]_60 chrIII:6299003-6299083 1.15e-01 80 chrV:7855846-7855926 2.51e-01 80 chrV:1158468-1158548 3.10e-01 80 chrV:1364504-1364584 1.67e-01 80 chrV:10477282-10477362 1.95e-01 80 chrIII:3807767-3807847 9.32e-03 6_[+3(1.25e-05)]_66 chrV:10867737-10867817 1.86e-01 26_[+2(8.58e-05)]_46 chrV:5018251-5018331 3.56e-01 80 chrX:13923418-13923498 6.75e-01 80 chrII:1236704-1236784 1.48e-02 28_[+4(7.25e-06)]_44 chrV:4688223-4688303 3.54e-01 80 chrIV:6958804-6958884 3.52e-02 51_[+2(2.00e-05)]_2_[+2(2.00e-05)]_\ 11 chrV:730445-730525 6.25e-01 80 chrIV:13702917-13702997 2.10e-01 80 chrV:10677630-10677710 4.99e-02 72_[+2(8.58e-05)] chrI:8308871-8308951 1.42e-04 28_[+5(4.30e-05)]_2_[+1(6.21e-05)]_\ 34 chrV:4648043-4648123 1.17e-02 80 chrV:10729627-10729707 6.41e-01 80 chrV:11889801-11889881 9.34e-01 80 chrX:6571231-6571311 6.73e-01 80 chrI:6965767-6965847 8.16e-02 1_[+1(2.04e-05)]_71 chrV:14847483-14847563 2.18e-02 10_[+5(4.30e-05)]_62 chrV:4685670-4685750 1.00e+00 80 chrV:4694632-4694712 9.01e-01 80 chrII:9597891-9597971 3.87e-03 20_[+5(8.66e-05)]_52 chrV:10866551-10866631 5.69e-01 80 chrV:11802634-11802714 2.30e-01 32_[+1(3.70e-05)]_40 chrV:8662374-8662454 9.38e-02 67_[+1(3.70e-05)]_5 chrIII:10337604-10337684 3.60e-02 80 chrV:18573410-18573490 3.18e-01 80 chrI:5372383-5372463 7.92e-02 14_[+3(4.44e-05)]_58 chrI:14281884-14281964 4.85e-02 6_[+1(6.21e-05)]_14_[+1(6.21e-05)]_\ 44 chrX:6253002-6253082 5.58e-01 80 chrIII:6168151-6168231 8.12e-01 80 chrX:4813079-4813159 2.48e-03 3_[+1(3.70e-05)]_59_[+1(6.21e-05)]_\ 2 chrX:4662573-4662653 5.31e-02 34_[+2(2.00e-05)]_38 chrIII:12023080-12023160 8.55e-01 80 chrI:9962914-9962994 1.05e-01 51_[+2(4.49e-05)]_21 chrII:4456198-4456278 4.66e-02 80 chrV:19611795-19611875 1.91e-02 17_[+3(1.25e-05)]_55 chrIV:15696939-15697019 3.88e-02 80 chrV:1607985-1608065 1.34e-01 9_[+1(6.21e-05)]_63 chrIV:5582412-5582492 8.14e-03 44_[+5(4.30e-05)]_28 chrIII:9826280-9826360 2.23e-01 36_[+1(6.21e-05)]_10_[+1(6.21e-05)]_\ 18 chrV:11533154-11533234 2.29e-03 11_[+1(8.25e-05)]_39_[+2(2.00e-05)]_\ 14 chrV:13606993-13607073 2.66e-01 80 chrX:3535703-3535783 2.03e-07 13_[+4(7.25e-06)]_5_[+5(4.30e-05)]_\ 7_[+2(4.49e-05)]_31 chrX:6134749-6134829 2.28e-01 80 chrII:1244610-1244690 2.29e-01 80 chrX:12405001-12405081 3.73e-02 29_[+5(4.30e-05)]_43 chrII:6890298-6890378 3.46e-01 80 chrIII:7580769-7580849 8.64e-02 80 chrX:17419863-17419943 1.76e-02 80 chrI:9799811-9799891 2.15e-03 5_[+1(2.04e-05)]_67 chrIII:11936333-11936413 6.63e-01 80 chrI:8868481-8868561 9.95e-01 80 chrI:10407565-10407645 8.71e-02 80 chrII:13903679-13903759 5.88e-01 80 chrII:2962724-2962804 4.65e-03 1_[+3(1.25e-05)]_71 chrII:4749108-4749188 7.08e-01 80 chrII:3961422-3961502 5.81e-03 16_[+3(1.25e-05)]_56 chrII:6993102-6993182 5.50e-02 11_[+3(1.25e-05)]_61 chrII:11614293-11614373 9.39e-01 80 chrV:13111808-13111888 1.42e-01 80 chrI:6440531-6440611 6.80e-01 80 chrX:3126412-3126492 2.35e-02 80 chrII:7809157-7809237 5.09e-01 80 chrV:10478420-10478500 3.28e-02 14_[+5(8.66e-05)]_58 chrII:15192499-15192579 9.97e-01 80 chrV:10719955-10720035 8.61e-01 80 chrV:6355280-6355360 6.77e-02 40_[+3(2.24e-05)]_32 chrV:19610278-19610358 1.26e-01 80 chrV:8663159-8663239 1.36e-01 80 chrX:17519633-17519713 7.62e-03 25_[+5(4.30e-05)]_47 chrX:13542796-13542876 5.50e-04 71_[+1(2.04e-05)]_1 chrI:9850538-9850618 3.74e-01 80 chrV:10722263-10722343 1.45e-01 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chrIV:13178003-13178083 5.50e-02 1_[+5(8.66e-05)]_7_[+5(8.66e-05)]_\ 56 chrIII:11694726-11694806 3.35e-01 80 chrV:2134443-2134523 4.58e-02 80 chrV:14366708-14366788 4.29e-04 [+3(2.24e-05)]_15_[+5(4.30e-05)]_49 chrII:8790076-8790156 7.44e-01 80 chrIII:8287703-8287783 4.02e-02 80 chrIII:6148583-6148663 7.27e-01 80 chrX:15604185-15604265 1.66e-01 80 chrIII:11336211-11336291 9.44e-02 80 chrV:11137261-11137341 5.36e-01 80 chrV:2133739-2133819 8.34e-02 80 chrIII:6137601-6137681 6.30e-02 80 chrIV:3163702-3163782 6.68e-02 80 chrV:10681404-10681484 1.40e-04 28_[+3(1.25e-05)]_44 chrX:2698541-2698621 9.47e-01 80 chrX:9214094-9214174 6.60e-02 66_[+5(8.66e-05)]_6 chrX:4982248-4982328 8.38e-01 80 chrIV:4469356-4469436 1.42e-01 55_[+2(8.58e-05)]_17 chrV:8452145-8452225 2.46e-02 31_[+2(8.58e-05)]_41 chrII:8742118-8742198 3.43e-01 80 chrV:4491560-4491640 4.37e-01 80 chrV:13908732-13908812 2.43e-01 80 chrIV:1168705-1168785 2.12e-02 80 chrV:726232-726312 2.14e-01 80 chrII:6562312-6562392 3.12e-01 80 chrI:9801319-9801399 4.47e-02 80 chrV:4499438-4499518 6.42e-01 80 chrIV:5081311-5081391 9.46e-03 80 chrIV:14594402-14594482 8.21e-01 80 chrIV:2605883-2605963 1.31e-01 80 chrV:5832918-5832998 1.71e-01 80 chrII:13678688-13678768 5.31e-01 80 chrX:11472162-11472242 2.11e-02 80 chrI:7578729-7578809 8.68e-02 80 chrV:2243008-2243088 3.83e-01 80 chrIV:5591290-5591370 1.98e-01 80 chrIII:6415314-6415394 3.14e-02 43_[+2(2.00e-05)]_29 chrX:11068466-11068546 7.82e-01 80 chrV:4803204-4803284 1.56e-01 44_[+1(2.04e-05)]_28 chrIV:1867003-1867083 1.17e-01 80 chrII:6707600-6707680 1.22e-02 42_[+3(1.25e-05)]_30 chrI:9271288-9271368 7.59e-01 80 chrIII:3031443-3031523 4.40e-02 54_[+1(3.70e-05)]_[+1(3.70e-05)]_10 chrI:14061864-14061944 8.48e-01 80 chrIV:9918205-9918285 8.56e-02 12_[+1(8.25e-05)]_19_[+1(6.21e-05)]_\ 33 chrI:14952660-14952740 2.96e-01 80 chrIII:3864364-3864444 1.21e-01 8_[+2(8.58e-05)]_64 chrIV:5086235-5086315 5.87e-01 80 chrI:9332661-9332741 4.44e-01 80 chrIV:13388895-13388975 9.57e-01 80 chrV:11531120-11531200 5.40e-01 80 chrV:4190354-4190434 1.90e-01 80 chrII:10546034-10546114 6.62e-02 80 chrIII:5845672-5845752 1.02e-01 7_[+1(3.70e-05)]_65 chrV:11077764-11077844 7.09e-01 80 chrII:11337449-11337529 8.54e-01 80 chrIV:8793351-8793431 9.11e-02 80 chrIII:7737024-7737104 1.28e-02 27_[+5(4.30e-05)]_45 chrII:8131522-8131602 5.96e-01 80 chrX:15342357-15342437 6.35e-01 80 chrIII:13271169-13271249 3.51e-02 80 chrX:4391875-4391955 1.65e-03 58_[+1(2.04e-05)]_6_[+4(1.32e-05)] chrX:11473433-11473513 8.57e-01 80 chrX:4151459-4151539 1.63e-02 11_[+4(7.25e-06)]_61 chrIV:8526178-8526258 5.54e-01 80 chrIII:10299708-10299788 6.37e-01 80 chrX:8952132-8952212 1.71e-04 53_[+4(1.91e-05)]_19 chrI:4308530-4308610 6.16e-01 80 chrV:10468509-10468589 3.19e-02 80 chrX:8986532-8986612 1.70e-02 31_[+5(4.30e-05)]_41 chrIII:595619-595699 9.81e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************