******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/Y22D7AL.16.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:5056378-5056458 1.0000 80 chrI:933475-933555 1.0000 80 chrIII:1653855-1653935 1.0000 80 chrIII:931568-931648 1.0000 80 chrIII:3499998-3500078 1.0000 80 chrII:13986224-13986304 1.0000 80 chrX:8156147-8156227 1.0000 80 chrX:3969536-3969616 1.0000 80 chrIII:1659724-1659804 1.0000 80 chrI:1069255-1069335 1.0000 80 chrI:6136593-6136673 1.0000 80 chrIV:14576620-14576700 1.0000 80 chrV:7230978-7231058 1.0000 80 chrII:14635363-14635443 1.0000 80 chrIV:3233441-3233521 1.0000 80 chrI:1575713-1575793 1.0000 80 chrX:9622787-9622867 1.0000 80 chrIII:3664379-3664459 1.0000 80 chrII:2570543-2570623 1.0000 80 chrI:5308390-5308470 1.0000 80 chrII:11749320-11749400 1.0000 80 chrIV:842780-842860 1.0000 80 chrIII:3476296-3476376 1.0000 80 chrV:19723096-19723176 1.0000 80 chrX:1021894-1021974 1.0000 80 chrIV:2639828-2639908 1.0000 80 chrIII:10857018-10857098 1.0000 80 chrI:14620821-14620901 1.0000 80 chrV:14783844-14783924 1.0000 80 chrIV:5334692-5334772 1.0000 80 chrII:7001603-7001683 1.0000 80 chrIII:8653109-8653189 1.0000 80 chrV:12510127-12510207 1.0000 80 chrV:20852206-20852286 1.0000 80 chrI:1175869-1175949 1.0000 80 chrIV:13084053-13084133 1.0000 80 chrX:16928241-16928321 1.0000 80 chrI:9268930-9269010 1.0000 80 chrIV:16382324-16382404 1.0000 80 chrX:14115666-14115746 1.0000 80 chrIV:16776062-16776142 1.0000 80 chrX:3994610-3994690 1.0000 80 chrV:12024443-12024523 1.0000 80 chrIV:7489378-7489458 1.0000 80 chrIII:1668611-1668691 1.0000 80 chrI:10772264-10772344 1.0000 80 chrX:10821340-10821420 1.0000 80 chrII:7708727-7708807 1.0000 80 chrX:12890294-12890374 1.0000 80 chrII:4238029-4238109 1.0000 80 chrX:16602474-16602554 1.0000 80 chrIII:5769879-5769959 1.0000 80 chrIII:7642155-7642235 1.0000 80 chrV:4510552-4510632 1.0000 80 chrV:11449529-11449609 1.0000 80 chrI:2717542-2717622 1.0000 80 chrIII:671198-671278 1.0000 80 chrII:3267920-3268000 1.0000 80 chrX:4813439-4813519 1.0000 80 chrI:3246586-3246666 1.0000 80 chrII:6721763-6721843 1.0000 80 chrIV:14013852-14013932 1.0000 80 chrIV:5078193-5078273 1.0000 80 chrII:5293403-5293483 1.0000 80 chrIV:8229007-8229087 1.0000 80 chrIII:3175142-3175222 1.0000 80 chrI:7535450-7535530 1.0000 80 chrI:820148-820228 1.0000 80 chrIII:12399918-12399998 1.0000 80 chrX:9296747-9296827 1.0000 80 chrII:5577209-5577289 1.0000 80 chrII:6565270-6565350 1.0000 80 chrIII:1601628-1601708 1.0000 80 chrI:10807264-10807344 1.0000 80 chrIII:349587-349667 1.0000 80 chrV:13393571-13393651 1.0000 80 chrII:11637431-11637511 1.0000 80 chrV:53446-53526 1.0000 80 chrIV:13013053-13013133 1.0000 80 chrIII:13225153-13225233 1.0000 80 chrV:15553988-15554068 1.0000 80 chrIV:10503896-10503976 1.0000 80 chrIV:16399118-16399198 1.0000 80 chrIII:4428929-4429009 1.0000 80 chrX:14804875-14804955 1.0000 80 chrII:3567785-3567865 1.0000 80 chrIV:3399183-3399263 1.0000 80 chrIII:1122409-1122489 1.0000 80 chrIII:315674-315754 1.0000 80 chrII:7003160-7003240 1.0000 80 chrII:6248650-6248730 1.0000 80 chrX:3348010-3348090 1.0000 80 chrX:9078315-9078395 1.0000 80 chrX:13781607-13781687 1.0000 80 chrI:6532080-6532160 1.0000 80 chrIV:7623900-7623980 1.0000 80 chrV:12780397-12780477 1.0000 80 chrIII:13721356-13721436 1.0000 80 chrX:8925616-8925696 1.0000 80 chrIII:8106637-8106717 1.0000 80 chrX:5319375-5319455 1.0000 80 chrIV:1388167-1388247 1.0000 80 chrIII:640574-640654 1.0000 80 chrX:8971602-8971682 1.0000 80 chrI:8530121-8530201 1.0000 80 chrX:1443636-1443716 1.0000 80 chrI:9605776-9605856 1.0000 80 chrII:2565038-2565118 1.0000 80 chrII:4942530-4942610 1.0000 80 chrII:2860262-2860342 1.0000 80 chrIV:1981111-1981191 1.0000 80 chrIV:358987-359067 1.0000 80 chrIV:658213-658293 1.0000 80 chrX:13415105-13415185 1.0000 80 chrV:15551830-15551910 1.0000 80 chrIII:9104173-9104253 1.0000 80 chrII:12042349-12042429 1.0000 80 chrI:3908742-3908822 1.0000 80 chrIV:9191336-9191416 1.0000 80 chrIV:16946909-16946989 1.0000 80 chrX:4444225-4444305 1.0000 80 chrX:8995773-8995853 1.0000 80 chrII:3439416-3439496 1.0000 80 chrX:8646503-8646583 1.0000 80 chrIII:7030556-7030636 1.0000 80 chrI:488370-488450 1.0000 80 chrIII:1824646-1824726 1.0000 80 chrIII:4426880-4426960 1.0000 80 chrIII:1600842-1600922 1.0000 80 chrI:7082964-7083044 1.0000 80 chrX:1524587-1524667 1.0000 80 chrI:13421232-13421312 1.0000 80 chrI:14945675-14945755 1.0000 80 chrIII:8650382-8650462 1.0000 80 chrIII:3916754-3916834 1.0000 80 chrV:11239380-11239460 1.0000 80 chrX:12843647-12843727 1.0000 80 chrIII:3869320-3869400 1.0000 80 chrI:11978693-11978773 1.0000 80 chrV:5284758-5284838 1.0000 80 chrIII:4378689-4378769 1.0000 80 chrX:12367610-12367690 1.0000 80 chrI:14721561-14721641 1.0000 80 chrX:7794531-7794611 1.0000 80 chrI:6366258-6366338 1.0000 80 chrX:5022903-5022983 1.0000 80 chrIV:9477718-9477798 1.0000 80 chrX:1837829-1837909 1.0000 80 chrIV:7084898-7084978 1.0000 80 chrX:13264680-13264760 1.0000 80 chrIII:5211404-5211484 1.0000 80 chrII:9566185-9566265 1.0000 80 chrV:6785249-6785329 1.0000 80 chrI:7772585-7772665 1.0000 80 chrV:13962183-13962263 1.0000 80 chrX:5407383-5407463 1.0000 80 chrIV:11026161-11026241 1.0000 80 chrIII:4568713-4568793 1.0000 80 chrIII:1424463-1424543 1.0000 80 chrIV:2805635-2805715 1.0000 80 chrII:10169559-10169639 1.0000 80 chrIII:4171146-4171226 1.0000 80 chrIV:3524754-3524834 1.0000 80 chrX:5686275-5686355 1.0000 80 chrI:10593145-10593225 1.0000 80 chrIII:8768068-8768148 1.0000 80 chrIV:3552204-3552284 1.0000 80 chrV:19126018-19126098 1.0000 80 chrX:9637866-9637946 1.0000 80 chrI:13310331-13310411 1.0000 80 chrX:16604736-16604816 1.0000 80 chrII:14063232-14063312 1.0000 80 chrX:5707956-5708036 1.0000 80 chrIII:11371422-11371502 1.0000 80 chrX:10963771-10963851 1.0000 80 chrII:3521518-3521598 1.0000 80 chrI:13160988-13161068 1.0000 80 chrV:11610649-11610729 1.0000 80 chrI:2410102-2410182 1.0000 80 chrIII:11091978-11092058 1.0000 80 chrIV:322656-322736 1.0000 80 chrIII:4004410-4004490 1.0000 80 chrIV:143950-144030 1.0000 80 chrIV:17087588-17087668 1.0000 80 chrI:5379925-5380005 1.0000 80 chrIII:4414253-4414333 1.0000 80 chrV:10579043-10579123 1.0000 80 chrII:14349680-14349760 1.0000 80 chrI:3873928-3874008 1.0000 80 chrX:11643886-11643966 1.0000 80 chrIII:535422-535502 1.0000 80 chrII:5292264-5292344 1.0000 80 chrII:5772928-5773008 1.0000 80 chrX:10132708-10132788 1.0000 80 chrIII:9861673-9861753 1.0000 80 chrX:10188576-10188656 1.0000 80 chrI:10927470-10927550 1.0000 80 chrV:6888958-6889038 1.0000 80 chrV:4731513-4731593 1.0000 80 chrX:12458187-12458267 1.0000 80 chrIII:9629930-9630010 1.0000 80 chrIII:6133630-6133710 1.0000 80 chrIV:14838323-14838403 1.0000 80 chrX:15742043-15742123 1.0000 80 chrI:5176408-5176488 1.0000 80 chrX:6371405-6371485 1.0000 80 chrX:6903161-6903241 1.0000 80 chrII:10388192-10388272 1.0000 80 chrV:11113376-11113456 1.0000 80 chrI:14737443-14737523 1.0000 80 chrX:1379568-1379648 1.0000 80 chrX:8386199-8386279 1.0000 80 chrX:13121316-13121396 1.0000 80 chrI:13330930-13331010 1.0000 80 chrV:13003541-13003621 1.0000 80 chrI:1823188-1823268 1.0000 80 chrV:6709178-6709258 1.0000 80 chrIII:5305927-5306007 1.0000 80 chrIII:10407237-10407317 1.0000 80 chrII:11636019-11636099 1.0000 80 chrII:14405345-14405425 1.0000 80 chrII:11959401-11959481 1.0000 80 chrIII:6158772-6158852 1.0000 80 chrIII:5295030-5295110 1.0000 80 chrX:4523994-4524074 1.0000 80 chrII:8547157-8547237 1.0000 80 chrX:10145173-10145253 1.0000 80 chrIII:5555076-5555156 1.0000 80 chrIII:6887714-6887794 1.0000 80 chrI:1958532-1958612 1.0000 80 chrX:15492882-15492962 1.0000 80 chrV:7060534-7060614 1.0000 80 chrX:13511959-13512039 1.0000 80 chrIII:4470875-4470955 1.0000 80 chrII:9774819-9774899 1.0000 80 chrII:8107240-8107320 1.0000 80 chrX:12563787-12563867 1.0000 80 chrX:3697739-3697819 1.0000 80 chrX:6593552-6593632 1.0000 80 chrIV:620537-620617 1.0000 80 chrIV:683089-683169 1.0000 80 chrV:13789621-13789701 1.0000 80 chrIII:10624767-10624847 1.0000 80 chrX:6292303-6292383 1.0000 80 chrIV:16491728-16491808 1.0000 80 chrIV:8253017-8253097 1.0000 80 chrX:2613218-2613298 1.0000 80 chrV:1003922-1004002 1.0000 80 chrII:8569439-8569519 1.0000 80 chrIV:11549883-11549963 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_Y22D7AL.16/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/Y22D7AL.16.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.247 C 0.253 G 0.248 T 0.252 Background letter frequencies (from file dataset with add-one prior applied): A 0.247 C 0.253 G 0.248 T 0.252 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TCGAACCC MEME-1 width = 8 sites = 50 llr = 426 E-value = 1.6e-020 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::a8::1 pos.-specific C :8:::8a7 probability G ::a:1::: matrix T a2::12:1 bits 2.0 * ** 1.8 * ** * 1.6 * ** * 1.4 * ** * Relative 1.2 **** ** Entropy 1.0 ******* (12.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCGAACCC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:6887714-6887794 29 1.56e-05 CCTAGGGGAC TCGAACCC CTGACCTTAA chrX:1379568-1379648 50 1.56e-05 TCGGGGGGAA TCGAACCC CCGTCGAATG chrX:15742043-15742123 72 1.56e-05 GGGCGCAGGT TCGAACCC T chrIV:14838323-14838403 12 1.56e-05 GGGGACGGGT TCGAACCC AGGACACTAT chrII:5772928-5773008 3 1.56e-05 GT TCGAACCC ACGAGGTGTT chrX:12367610-12367690 47 1.56e-05 ATGCCGGGAA TCGAACCC GGGCCGCGTG chrIII:8650382-8650462 14 1.56e-05 GAACCGGGAA TCGAACCC GGGACCTCTC chrI:9605776-9605856 43 1.56e-05 CCGCGTAGGT TCGAACCC TGCTCGCTGC chrI:8530121-8530201 22 1.56e-05 TTGCGGGGAA TCGAACCC CGGCCTTATG chrIV:1388167-1388247 64 1.56e-05 ATGCCGGGAA TCGAACCC GGGCCGCGT chrIII:7642155-7642235 18 1.56e-05 TTGCGGGGAA TCGAACCC CGGCCTTATG chrX:10821340-10821420 2 1.56e-05 A TCGAACCC GGGCCGCGTG chrX:16928241-16928321 45 1.56e-05 cgaccgggaa tcgaaccc gggccgcccg chrIV:14576620-14576700 17 1.56e-05 TCGGGGGGAA TCGAACCC CCGTCGAATG chrX:10145173-10145253 37 3.12e-05 GATTGTAGGT TCGAATCC TGCCGTGGTC chrIII:6158772-6158852 69 3.12e-05 CCGCGTAGGT TCGAATCC TGCT chrX:10132708-10132788 24 3.12e-05 GATTGTAGGT TCGAATCC TGCCGTGGTC chrIII:535422-535502 25 3.12e-05 GGTCACTGGT TCGAATCC GGTTCGACGG chrX:8971602-8971682 61 3.12e-05 CCGCGTAGGT TCGAATCC TGCTGACTGC chrII:6721763-6721843 67 3.12e-05 GGGCGTGGGT TCGAATCC CACTCT chrX:13511959-13512039 26 4.67e-05 GAACCGGGGA TTGAACCC GGGACCTCTC chrX:12458187-12458267 4 4.67e-05 GAA TTGAACCC CAGCCCTCTC chrX:9637866-9637946 1 4.67e-05 . TTGAACCC CAGCCCTCTC chrIII:4428929-4429009 39 4.67e-05 GTATGGGGAA TTGAACCC CAGCCCTCTC chrX:12890294-12890374 6 4.67e-05 GGGAA TTGAACCC CGGACTTCTC chrX:9622787-9622867 52 4.67e-05 GTATGGGGAA TTGAACCC CAGCCCTCTC chrX:13264680-13264760 18 6.20e-05 CGAACCGGAT TCGAACCA GTGACCTAAG chrX:1837829-1837909 14 6.20e-05 GAAGAAAAAA TCGAACCA CGGTCTTGTG chrIII:7030556-7030636 16 6.20e-05 CATGCTGGAA TCGAACCA GCGACCTTCT chrIII:9104173-9104253 49 6.20e-05 CCGGGTGGGC TCGAACCA CCAACCTTTC chrIII:13225153-13225233 24 6.20e-05 CCGGGTGGGC TCGAACCA CCAACCTTTC chrIII:4470875-4470955 26 9.32e-05 ACGGCAGGAC TCGAACCT GCAATCCCCA chrX:8386199-8386279 59 9.32e-05 GATTGCAGGT TCGAGCCC TGCCTGGGTC chrX:13415105-13415185 30 9.32e-05 CCAGCAGGGG TCGAACCT GCGACCTTGG chrV:12780397-12780477 4 9.32e-05 GGT TCGAACCT ACGCGGGCAA chrI:1575713-1575793 61 9.32e-05 GATTGCAGGT TCGAGCCC TGCCTGGGTC chrI:6136593-6136673 58 9.32e-05 TGTCGCGGGT TCGAGCCC CGCATTGGGC chrII:11959401-11959481 28 1.09e-04 GGCCGCCGGT TCGATCCC GGCCAGGACC chrI:9268930-9269010 13 1.09e-04 GAGCCGGGGA TCGATCCC GGGACCTCTC chrX:8925616-8925696 58 1.25e-04 ACTCATGACT TTGAATCC TGCGACCCGA chrII:12042349-12042429 4 1.71e-04 TAT TCGAATCT AAAATGAAAA chrII:6565270-6565350 32 1.71e-04 GGTCAGGGGT TCGAGTCC CCTAGGTGGC chrIII:11371422-11371502 3 1.86e-04 TT TTGAACCA GTGACCTTCA chrI:10593145-10593225 44 2.02e-04 cggcccgggt tcgattcc cggtcgatgc chrX:8646503-8646583 30 2.02e-04 CGGCCCGGGT TCGATTCC CGGCATGGGA chrX:3994610-3994690 45 2.02e-04 CGACGGGGGT TCGATTCC CCCCCCCCCG chrIII:10407237-10407317 35 2.33e-04 GAAAACGCCA TTGAACCT TGAAAATCGC chrIII:1600842-1600922 10 2.64e-04 ACTGACCTC TCGAGCCA AAAGCAGACG chrX:3697739-3697819 71 2.96e-04 GGTCGTGAGT TCGAGCCT CA chrX:5407383-5407463 45 3.27e-04 CCGGTGAGGC TCGAACTC ACGACCTTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:6887714-6887794 1.6e-05 28_[+1]_44 chrX:1379568-1379648 1.6e-05 49_[+1]_23 chrX:15742043-15742123 1.6e-05 71_[+1]_1 chrIV:14838323-14838403 1.6e-05 11_[+1]_61 chrII:5772928-5773008 1.6e-05 2_[+1]_70 chrX:12367610-12367690 1.6e-05 46_[+1]_26 chrIII:8650382-8650462 1.6e-05 13_[+1]_59 chrI:9605776-9605856 1.6e-05 42_[+1]_30 chrI:8530121-8530201 1.6e-05 21_[+1]_51 chrIV:1388167-1388247 1.6e-05 63_[+1]_9 chrIII:7642155-7642235 1.6e-05 17_[+1]_55 chrX:10821340-10821420 1.6e-05 1_[+1]_71 chrX:16928241-16928321 1.6e-05 44_[+1]_28 chrIV:14576620-14576700 1.6e-05 16_[+1]_56 chrX:10145173-10145253 3.1e-05 36_[+1]_36 chrIII:6158772-6158852 3.1e-05 68_[+1]_4 chrX:10132708-10132788 3.1e-05 23_[+1]_49 chrIII:535422-535502 3.1e-05 24_[+1]_48 chrX:8971602-8971682 3.1e-05 60_[+1]_12 chrII:6721763-6721843 3.1e-05 66_[+1]_6 chrX:13511959-13512039 4.7e-05 25_[+1]_47 chrX:12458187-12458267 4.7e-05 3_[+1]_69 chrX:9637866-9637946 4.7e-05 [+1]_72 chrIII:4428929-4429009 4.7e-05 38_[+1]_34 chrX:12890294-12890374 4.7e-05 5_[+1]_67 chrX:9622787-9622867 4.7e-05 51_[+1]_21 chrX:13264680-13264760 6.2e-05 17_[+1]_55 chrX:1837829-1837909 6.2e-05 13_[+1]_59 chrIII:7030556-7030636 6.2e-05 15_[+1]_57 chrIII:9104173-9104253 6.2e-05 48_[+1]_24 chrIII:13225153-13225233 6.2e-05 23_[+1]_49 chrIII:4470875-4470955 9.3e-05 25_[+1]_47 chrX:8386199-8386279 9.3e-05 58_[+1]_14 chrX:13415105-13415185 9.3e-05 29_[+1]_43 chrV:12780397-12780477 9.3e-05 3_[+1]_69 chrI:1575713-1575793 9.3e-05 60_[+1]_12 chrI:6136593-6136673 9.3e-05 57_[+1]_15 chrII:11959401-11959481 0.00011 27_[+1]_45 chrI:9268930-9269010 0.00011 12_[+1]_60 chrX:8925616-8925696 0.00012 57_[+1]_15 chrII:12042349-12042429 0.00017 3_[+1]_69 chrII:6565270-6565350 0.00017 31_[+1]_41 chrIII:11371422-11371502 0.00019 2_[+1]_70 chrI:10593145-10593225 0.0002 43_[+1]_29 chrX:8646503-8646583 0.0002 29_[+1]_43 chrX:3994610-3994690 0.0002 44_[+1]_28 chrIII:10407237-10407317 0.00023 34_[+1]_38 chrIII:1600842-1600922 0.00026 9_[+1]_63 chrX:3697739-3697819 0.0003 70_[+1]_2 chrX:5407383-5407463 0.00033 44_[+1]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCGAACCC width=8 seqs=50 chrIII:6887714-6887794 ( 29) TCGAACCC 1 chrX:1379568-1379648 ( 50) TCGAACCC 1 chrX:15742043-15742123 ( 72) TCGAACCC 1 chrIV:14838323-14838403 ( 12) TCGAACCC 1 chrII:5772928-5773008 ( 3) TCGAACCC 1 chrX:12367610-12367690 ( 47) TCGAACCC 1 chrIII:8650382-8650462 ( 14) TCGAACCC 1 chrI:9605776-9605856 ( 43) TCGAACCC 1 chrI:8530121-8530201 ( 22) TCGAACCC 1 chrIV:1388167-1388247 ( 64) TCGAACCC 1 chrIII:7642155-7642235 ( 18) TCGAACCC 1 chrX:10821340-10821420 ( 2) TCGAACCC 1 chrX:16928241-16928321 ( 45) TCGAACCC 1 chrIV:14576620-14576700 ( 17) TCGAACCC 1 chrX:10145173-10145253 ( 37) TCGAATCC 1 chrIII:6158772-6158852 ( 69) TCGAATCC 1 chrX:10132708-10132788 ( 24) TCGAATCC 1 chrIII:535422-535502 ( 25) TCGAATCC 1 chrX:8971602-8971682 ( 61) TCGAATCC 1 chrII:6721763-6721843 ( 67) TCGAATCC 1 chrX:13511959-13512039 ( 26) TTGAACCC 1 chrX:12458187-12458267 ( 4) TTGAACCC 1 chrX:9637866-9637946 ( 1) TTGAACCC 1 chrIII:4428929-4429009 ( 39) TTGAACCC 1 chrX:12890294-12890374 ( 6) TTGAACCC 1 chrX:9622787-9622867 ( 52) TTGAACCC 1 chrX:13264680-13264760 ( 18) TCGAACCA 1 chrX:1837829-1837909 ( 14) TCGAACCA 1 chrIII:7030556-7030636 ( 16) TCGAACCA 1 chrIII:9104173-9104253 ( 49) TCGAACCA 1 chrIII:13225153-13225233 ( 24) TCGAACCA 1 chrIII:4470875-4470955 ( 26) TCGAACCT 1 chrX:8386199-8386279 ( 59) TCGAGCCC 1 chrX:13415105-13415185 ( 30) TCGAACCT 1 chrV:12780397-12780477 ( 4) TCGAACCT 1 chrI:1575713-1575793 ( 61) TCGAGCCC 1 chrI:6136593-6136673 ( 58) TCGAGCCC 1 chrII:11959401-11959481 ( 28) TCGATCCC 1 chrI:9268930-9269010 ( 13) TCGATCCC 1 chrX:8925616-8925696 ( 58) TTGAATCC 1 chrII:12042349-12042429 ( 4) TCGAATCT 1 chrII:6565270-6565350 ( 32) TCGAGTCC 1 chrIII:11371422-11371502 ( 3) TTGAACCA 1 chrI:10593145-10593225 ( 44) TCGATTCC 1 chrX:8646503-8646583 ( 30) TCGATTCC 1 chrX:3994610-3994690 ( 45) TCGATTCC 1 chrIII:10407237-10407317 ( 35) TTGAACCT 1 chrIII:1600842-1600922 ( 10) TCGAGCCA 1 chrX:3697739-3697819 ( 71) TCGAGCCT 1 chrX:5407383-5407463 ( 45) TCGAACTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.64284 E= 1.6e-020 -1229 -1229 -1229 199 -1229 170 -1229 -49 -1229 -1229 201 -1229 201 -1229 -1229 -1229 166 -1229 -104 -133 -1229 159 -1229 -7 -1229 195 -1229 -365 -82 155 -1229 -107 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 50 E= 1.6e-020 0.000000 0.000000 0.000000 1.000000 0.000000 0.820000 0.000000 0.180000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.780000 0.000000 0.120000 0.100000 0.000000 0.760000 0.000000 0.240000 0.000000 0.980000 0.000000 0.020000 0.140000 0.740000 0.000000 0.120000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGAACCC MEME-1 regular expression -------------------------------------------------------------------------------- TCGAA[CT]CC -------------------------------------------------------------------------------- Time 6.92 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTCTACC MEME-2 width = 8 sites = 20 llr = 202 E-value = 4.8e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTCTACC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::71: pos.-specific C :a:a:1aa probability G a::::3:: matrix T ::a:a::: bits 2.0 ***** * 1.8 ***** * 1.6 ***** ** 1.4 ***** ** Relative 1.2 ***** ** Entropy 1.0 ******** (14.6 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCTCTACC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTACC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:16491728-16491808 30 1.59e-05 gtgtgtgtgt gCTCTACC GCCATCTCTG chrX:6292303-6292383 23 1.59e-05 CAAAGCGAGC GCTCTACC CCTGAGCTAT chrIII:6887714-6887794 62 1.59e-05 AAAGTCTCAC GCTCTACC AACTGAGCTA chrV:13003541-13003621 16 1.59e-05 CTAAGGGAGC GCTCTACC ACTGAGCTAT chrX:12458187-12458267 37 1.59e-05 CTAAGGGAGC GCTCTACC ACTGAGCTAT chrI:13310331-13310411 62 1.59e-05 CAAGACCAAC GCTCTACC ACTGAGCTAT chrX:9637866-9637946 34 1.59e-05 CTAAGGGAGC GCTCTACC ACTGAGCTAT chrX:13264680-13264760 62 1.59e-05 ACAGTCCTCC GCTCTACC AACTGAGCTA chrII:3439416-3439496 26 1.59e-05 AGAGTCTGGT GCTCTACC GACTGAGCTA chrII:3567785-3567865 27 1.59e-05 AGAGTCTGGT GCTCTACC GACTGAGCTA chrIII:4428929-4429009 72 1.59e-05 CTAAGGGAGC GCTCTACC A chrIV:14013852-14013932 1 1.59e-05 . GCTCTACC CCTGAGCTAT chrX:12890294-12890374 39 1.59e-05 CGAAGCGAGC GCTCTACC CCTGAGCTAT chrIII:10624767-10624847 23 3.19e-05 CTAGACAGAC GCTCTGCC ACTGAGCCAA chrIII:6158772-6158852 52 3.19e-05 AATCAATTGG GCTCTGCC CGCGTAGGTT chrIII:7030556-7030636 49 3.19e-05 CTAGACAGAC GCTCTGCC ACTGAGCCAA chrX:8971602-8971682 44 3.19e-05 AATCAATTGG GCTCTGCC CGCGTAGGTT chrI:1069255-1069335 54 3.19e-05 AGAGTTCGTC GCTCTGCC CCGGGGGCCC chrX:5319375-5319455 58 4.83e-05 TCAGTCGTAC GCTCTCCC AACTGAGCTA chrX:13415105-13415185 63 6.38e-05 TTAGACCCAC GCTCTAAC CGACTGAGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTACC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:16491728-16491808 1.6e-05 29_[+2]_43 chrX:6292303-6292383 1.6e-05 22_[+2]_50 chrIII:6887714-6887794 1.6e-05 61_[+2]_11 chrV:13003541-13003621 1.6e-05 15_[+2]_57 chrX:12458187-12458267 1.6e-05 36_[+2]_36 chrI:13310331-13310411 1.6e-05 61_[+2]_11 chrX:9637866-9637946 1.6e-05 33_[+2]_39 chrX:13264680-13264760 1.6e-05 61_[+2]_11 chrII:3439416-3439496 1.6e-05 25_[+2]_47 chrII:3567785-3567865 1.6e-05 26_[+2]_46 chrIII:4428929-4429009 1.6e-05 71_[+2]_1 chrIV:14013852-14013932 1.6e-05 [+2]_72 chrX:12890294-12890374 1.6e-05 38_[+2]_34 chrIII:10624767-10624847 3.2e-05 22_[+2]_50 chrIII:6158772-6158852 3.2e-05 51_[+2]_21 chrIII:7030556-7030636 3.2e-05 48_[+2]_24 chrX:8971602-8971682 3.2e-05 43_[+2]_29 chrI:1069255-1069335 3.2e-05 53_[+2]_19 chrX:5319375-5319455 4.8e-05 57_[+2]_15 chrX:13415105-13415185 6.4e-05 62_[+2]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTACC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTCTACC width=8 seqs=20 chrIV:16491728-16491808 ( 30) GCTCTACC 1 chrX:6292303-6292383 ( 23) GCTCTACC 1 chrIII:6887714-6887794 ( 62) GCTCTACC 1 chrV:13003541-13003621 ( 16) GCTCTACC 1 chrX:12458187-12458267 ( 37) GCTCTACC 1 chrI:13310331-13310411 ( 62) GCTCTACC 1 chrX:9637866-9637946 ( 34) GCTCTACC 1 chrX:13264680-13264760 ( 62) GCTCTACC 1 chrII:3439416-3439496 ( 26) GCTCTACC 1 chrII:3567785-3567865 ( 27) GCTCTACC 1 chrIII:4428929-4429009 ( 72) GCTCTACC 1 chrIV:14013852-14013932 ( 1) GCTCTACC 1 chrX:12890294-12890374 ( 39) GCTCTACC 1 chrIII:10624767-10624847 ( 23) GCTCTGCC 1 chrIII:6158772-6158852 ( 52) GCTCTGCC 1 chrIII:7030556-7030636 ( 49) GCTCTGCC 1 chrX:8971602-8971682 ( 44) GCTCTGCC 1 chrI:1069255-1069335 ( 54) GCTCTGCC 1 chrX:5319375-5319455 ( 58) GCTCTCCC 1 chrX:13415105-13415185 ( 63) GCTCTAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTACC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0839 E= 4.8e-006 -1097 -1097 201 -1097 -1097 198 -1097 -1097 -1097 -1097 -1097 199 -1097 198 -1097 -1097 -1097 -1097 -1097 199 150 -234 1 -1097 -230 191 -1097 -1097 -1097 198 -1097 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTACC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 4.8e-006 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.700000 0.050000 0.250000 0.000000 0.050000 0.950000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTCTACC MEME-2 regular expression -------------------------------------------------------------------------------- GCTCT[AG]CC -------------------------------------------------------------------------------- Time 10.59 secs. ******************************************************************************** ******************************************************************************** MOTIF ACTGAGCT MEME-3 width = 8 sites = 15 llr = 153 E-value = 4.2e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACTGAGCT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 8:::a::: pos.-specific C 2a::::a1 probability G :::a:a:: matrix T ::a::::9 bits 2.0 ****** 1.8 ****** 1.6 ****** 1.4 ******* Relative 1.2 ******** Entropy 1.0 ******** (14.7 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel ACTGAGCT consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGAGCT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:6887714-6887794 71 1.53e-05 CGCTCTACCA ACTGAGCT AA chrV:13003541-13003621 24 1.53e-05 GCGCTCTACC ACTGAGCT ATACCCCCGC chrX:12458187-12458267 45 1.53e-05 GCGCTCTACC ACTGAGCT ATACCCCCAG chrI:13310331-13310411 70 1.53e-05 ACGCTCTACC ACTGAGCT ATA chrX:9637866-9637946 42 1.53e-05 GCGCTCTACC ACTGAGCT ATACCCCCGC chrX:13264680-13264760 71 1.53e-05 CGCTCTACCA ACTGAGCT AT chrII:3439416-3439496 35 1.53e-05 TGCTCTACCG ACTGAGCT AACCGGGCCC chrX:13415105-13415185 73 1.53e-05 GCTCTAACCG ACTGAGCT chrX:5319375-5319455 67 1.53e-05 CGCTCTCCCA ACTGAGCT ATTGAG chrII:3567785-3567865 36 1.53e-05 TGCTCTACCG ACTGAGCT AACCGGGCGG chrX:6292303-6292383 31 3.09e-05 GCGCTCTACC CCTGAGCT ATACCCCCGT chrIV:14013852-14013932 9 3.09e-05 GCTCTACC CCTGAGCT ATACCCCCGG chrX:12890294-12890374 47 3.09e-05 GCGCTCTACC CCTGAGCT ATGCCCCCAC chrIII:10624767-10624847 31 4.62e-05 ACGCTCTGCC ACTGAGCC AATGAGGCGC chrIII:7030556-7030636 57 4.62e-05 ACGCTCTGCC ACTGAGCC AATGAGGCGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGAGCT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:6887714-6887794 1.5e-05 70_[+3]_2 chrV:13003541-13003621 1.5e-05 23_[+3]_49 chrX:12458187-12458267 1.5e-05 44_[+3]_28 chrI:13310331-13310411 1.5e-05 69_[+3]_3 chrX:9637866-9637946 1.5e-05 41_[+3]_31 chrX:13264680-13264760 1.5e-05 70_[+3]_2 chrII:3439416-3439496 1.5e-05 34_[+3]_38 chrX:13415105-13415185 1.5e-05 72_[+3] chrX:5319375-5319455 1.5e-05 66_[+3]_6 chrII:3567785-3567865 1.5e-05 35_[+3]_37 chrX:6292303-6292383 3.1e-05 30_[+3]_42 chrIV:14013852-14013932 3.1e-05 8_[+3]_64 chrX:12890294-12890374 3.1e-05 46_[+3]_26 chrIII:10624767-10624847 4.6e-05 30_[+3]_42 chrIII:7030556-7030636 4.6e-05 56_[+3]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGAGCT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACTGAGCT width=8 seqs=15 chrIII:6887714-6887794 ( 71) ACTGAGCT 1 chrV:13003541-13003621 ( 24) ACTGAGCT 1 chrX:12458187-12458267 ( 45) ACTGAGCT 1 chrI:13310331-13310411 ( 70) ACTGAGCT 1 chrX:9637866-9637946 ( 42) ACTGAGCT 1 chrX:13264680-13264760 ( 71) ACTGAGCT 1 chrII:3439416-3439496 ( 35) ACTGAGCT 1 chrX:13415105-13415185 ( 73) ACTGAGCT 1 chrX:5319375-5319455 ( 67) ACTGAGCT 1 chrII:3567785-3567865 ( 36) ACTGAGCT 1 chrX:6292303-6292383 ( 31) CCTGAGCT 1 chrIV:14013852-14013932 ( 9) CCTGAGCT 1 chrX:12890294-12890374 ( 47) CCTGAGCT 1 chrIII:10624767-10624847 ( 31) ACTGAGCC 1 chrIII:7030556-7030636 ( 57) ACTGAGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGAGCT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1725 E= 4.2e-001 169 -34 -1055 -1055 -1055 198 -1055 -1055 -1055 -1055 -1055 199 -1055 -1055 201 -1055 201 -1055 -1055 -1055 -1055 -1055 201 -1055 -1055 198 -1055 -1055 -1055 -92 -1055 178 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGAGCT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 4.2e-001 0.800000 0.200000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.133333 0.000000 0.866667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACTGAGCT MEME-3 regular expression -------------------------------------------------------------------------------- [AC]CTGAGCT -------------------------------------------------------------------------------- Time 14.24 secs. ******************************************************************************** ******************************************************************************** MOTIF MAAAAAAW MEME-4 width = 8 sites = 40 llr = 319 E-value = 9.8e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif MAAAAAAW MEME-4 Description -------------------------------------------------------------------------------- Simplified A 68aaa6a5 pos.-specific C 4::::::: probability G :3:::3:2 matrix T :::::1:3 bits 2.0 *** * 1.8 *** * 1.6 *** * 1.4 *** * Relative 1.2 **** * Entropy 1.0 ***** * (11.5 bits) 0.8 ***** * 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAAAAAA consensus CG G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAAAAAW MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:6887714-6887794 2 1.39e-05 A AAAAAAAA GTCAAGCCAC chrV:10579043-10579123 46 1.39e-05 ACGTCAACGC AAAAAAAA TATTAGCAAG chrIII:1824646-1824726 27 1.39e-05 ATATCGCCTC AAAAAAAA GTCCGATGAA chrIII:1668611-1668691 65 1.39e-05 GTaaaataca aaaaaaaa attagaaa chrI:14620821-14620901 30 1.39e-05 aaaataacga aaaaaaaa cggaaaagaa chrII:11749320-11749400 24 1.39e-05 ACTAGAAGGG AAAAAAAA GAAAAAATAA chrIV:1388167-1388247 37 4.22e-05 GTGCAAAAAT AAAAAAAT AAACTTCCCA chrIII:4428929-4429009 2 4.22e-05 A CAAAAAAA GAATAAAAAG chrIV:3233441-3233521 73 4.22e-05 CACATAAAGC CAAAAAAA chrX:5407383-5407463 15 5.61e-05 CTGCAAATGA AAAAAGAA AAATAATTGC chrX:12367610-12367690 22 5.61e-05 TCACAACTGC AAAAAGAA ACTTCCCATG chrV:14783844-14783924 19 5.61e-05 TCTTGCGCTG AAAAAGAA ACTTACTGTT chrV:11610649-11610729 2 7.06e-05 G CAAAAAAT GTGCGCGGGG chrIII:9104173-9104253 24 7.06e-05 TGAGTTTTTG CAAAAAAT TTCGCTCCCG chrX:13415105-13415185 6 7.06e-05 TTATT CAAAAAAT TTGCCGCCAG chrII:2570543-2570623 30 7.06e-05 AAAAAACCGG CAAAAAAT CTTTTTAAAA chrI:1958532-1958612 71 9.84e-05 CGGGGCCTGG AGAAAAAA TC chrX:1837829-1837909 6 9.84e-05 CCCGA AGAAAAAA TCGAACCACG chrX:8646503-8646583 72 1.27e-04 TTTTGAATGG AAAAAGAT T chrX:5319375-5319455 1 1.27e-04 . CAAAAGAA TTGCCCCAAA chrX:16928241-16928321 21 1.27e-04 TCTGAAAATC CAAAAGAA Ttgcatcgac chrX:1021894-1021974 6 1.27e-04 tgatg caaaagaa gcagcagtag chrIII:4414253-4414333 61 1.70e-04 TTTTTTTTGC AGAAAAAT CCTGACATGA chrV:13962183-13962263 37 1.70e-04 GCGGCAACTG CAAAAAAG GGCGGAGCCC chrIV:7489378-7489458 31 1.70e-04 CTCCGACGCC AGAAAAAT AGTTGTGAGG chrIII:3476296-3476376 38 1.70e-04 CGCTGATTCG CGAAAAAA TGGGGCGGAG chrV:7230978-7231058 4 1.70e-04 CAC AGAAAAAT TAATCGACAA chrIII:1653855-1653935 36 1.70e-04 CACTCCCAAT CGAAAAAA CCATGACTCC chrIII:3916754-3916834 13 1.84e-04 CGAAATAAAG AAAAATAA TGTGAATTGA chrI:14721561-14721641 18 1.98e-04 TTAGTGATGA CAAAAGAT GACAAAAAGA chrII:3267920-3268000 1 1.98e-04 . CAAAAGAT TGCTAGTTTT chrIII:5295030-5295110 64 2.26e-04 GAGCGCATGC AAAAAGAG GGGAGAGTG chrI:13310331-13310411 4 2.26e-04 AGC AAAAAGAG ATTGCCCCCA chrIII:5305927-5306007 59 2.84e-04 AATTCGTTTG AAAAATAT CTTTTTGAAA chrV:11113376-11113456 53 2.84e-04 TATTTATTTC AAAAATAT AAGCGCCAAA chrI:5176408-5176488 11 2.84e-04 TTCTTGACAG AGAAAAAG TGTGCGCATG chrIV:10503896-10503976 51 2.84e-04 GGTTTTCGGG AGAAAAAG ACGCACACAG chrIV:13013053-13013133 30 2.84e-04 TGTTTCACTG CAAAATAA GTTAACATAC chrII:5577209-5577289 67 3.55e-04 TAGGACCGGA CGAAAAAG TGATCC chrIII:315674-315754 48 3.84e-04 ATGCAATTCT AAAAATAG GCCACGCCTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAAAAAW MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:6887714-6887794 1.4e-05 1_[+4]_71 chrV:10579043-10579123 1.4e-05 45_[+4]_27 chrIII:1824646-1824726 1.4e-05 26_[+4]_46 chrIII:1668611-1668691 1.4e-05 64_[+4]_8 chrI:14620821-14620901 1.4e-05 29_[+4]_43 chrII:11749320-11749400 1.4e-05 23_[+4]_49 chrIV:1388167-1388247 4.2e-05 36_[+4]_36 chrIII:4428929-4429009 4.2e-05 1_[+4]_71 chrIV:3233441-3233521 4.2e-05 72_[+4] chrX:5407383-5407463 5.6e-05 14_[+4]_58 chrX:12367610-12367690 5.6e-05 21_[+4]_51 chrV:14783844-14783924 5.6e-05 18_[+4]_54 chrV:11610649-11610729 7.1e-05 1_[+4]_71 chrIII:9104173-9104253 7.1e-05 23_[+4]_49 chrX:13415105-13415185 7.1e-05 5_[+4]_67 chrII:2570543-2570623 7.1e-05 29_[+4]_43 chrI:1958532-1958612 9.8e-05 70_[+4]_2 chrX:1837829-1837909 9.8e-05 5_[+4]_67 chrX:8646503-8646583 0.00013 71_[+4]_1 chrX:5319375-5319455 0.00013 [+4]_72 chrX:16928241-16928321 0.00013 20_[+4]_52 chrX:1021894-1021974 0.00013 5_[+4]_67 chrIII:4414253-4414333 0.00017 60_[+4]_12 chrV:13962183-13962263 0.00017 36_[+4]_36 chrIV:7489378-7489458 0.00017 30_[+4]_42 chrIII:3476296-3476376 0.00017 37_[+4]_35 chrV:7230978-7231058 0.00017 3_[+4]_69 chrIII:1653855-1653935 0.00017 35_[+4]_37 chrIII:3916754-3916834 0.00018 12_[+4]_60 chrI:14721561-14721641 0.0002 17_[+4]_55 chrII:3267920-3268000 0.0002 [+4]_72 chrIII:5295030-5295110 0.00023 63_[+4]_9 chrI:13310331-13310411 0.00023 3_[+4]_69 chrIII:5305927-5306007 0.00028 58_[+4]_14 chrV:11113376-11113456 0.00028 52_[+4]_20 chrI:5176408-5176488 0.00028 10_[+4]_62 chrIV:10503896-10503976 0.00028 50_[+4]_22 chrIV:13013053-13013133 0.00028 29_[+4]_43 chrII:5577209-5577289 0.00036 66_[+4]_6 chrIII:315674-315754 0.00038 47_[+4]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAAAAAW MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF MAAAAAAW width=8 seqs=40 chrIII:6887714-6887794 ( 2) AAAAAAAA 1 chrV:10579043-10579123 ( 46) AAAAAAAA 1 chrIII:1824646-1824726 ( 27) AAAAAAAA 1 chrIII:1668611-1668691 ( 65) AAAAAAAA 1 chrI:14620821-14620901 ( 30) AAAAAAAA 1 chrII:11749320-11749400 ( 24) AAAAAAAA 1 chrIV:1388167-1388247 ( 37) AAAAAAAT 1 chrIII:4428929-4429009 ( 2) CAAAAAAA 1 chrIV:3233441-3233521 ( 73) CAAAAAAA 1 chrX:5407383-5407463 ( 15) AAAAAGAA 1 chrX:12367610-12367690 ( 22) AAAAAGAA 1 chrV:14783844-14783924 ( 19) AAAAAGAA 1 chrV:11610649-11610729 ( 2) CAAAAAAT 1 chrIII:9104173-9104253 ( 24) CAAAAAAT 1 chrX:13415105-13415185 ( 6) CAAAAAAT 1 chrII:2570543-2570623 ( 30) CAAAAAAT 1 chrI:1958532-1958612 ( 71) AGAAAAAA 1 chrX:1837829-1837909 ( 6) AGAAAAAA 1 chrX:8646503-8646583 ( 72) AAAAAGAT 1 chrX:5319375-5319455 ( 1) CAAAAGAA 1 chrX:16928241-16928321 ( 21) CAAAAGAA 1 chrX:1021894-1021974 ( 6) CAAAAGAA 1 chrIII:4414253-4414333 ( 61) AGAAAAAT 1 chrV:13962183-13962263 ( 37) CAAAAAAG 1 chrIV:7489378-7489458 ( 31) AGAAAAAT 1 chrIII:3476296-3476376 ( 38) CGAAAAAA 1 chrV:7230978-7231058 ( 4) AGAAAAAT 1 chrIII:1653855-1653935 ( 36) CGAAAAAA 1 chrIII:3916754-3916834 ( 13) AAAAATAA 1 chrI:14721561-14721641 ( 18) CAAAAGAT 1 chrII:3267920-3268000 ( 1) CAAAAGAT 1 chrIII:5295030-5295110 ( 64) AAAAAGAG 1 chrI:13310331-13310411 ( 4) AAAAAGAG 1 chrIII:5305927-5306007 ( 59) AAAAATAT 1 chrV:11113376-11113456 ( 53) AAAAATAT 1 chrI:5176408-5176488 ( 11) AGAAAAAG 1 chrIV:10503896-10503976 ( 51) AGAAAAAG 1 chrIV:13013053-13013133 ( 30) CAAAATAA 1 chrII:5577209-5577289 ( 67) CGAAAAAG 1 chrIII:315674-315754 ( 48) AAAAATAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAAAAAW MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.8918 E= 9.8e-001 128 66 -1197 -1197 160 -1197 1 -1197 201 -1197 -1197 -1197 201 -1197 -1197 -1197 201 -1197 -1197 -1197 128 -1197 15 -101 201 -1197 -1197 -1197 101 -1197 -50 37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAAAAAW MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 40 E= 9.8e-001 0.600000 0.400000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.600000 0.000000 0.275000 0.125000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.175000 0.325000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif MAAAAAAW MEME-4 regular expression -------------------------------------------------------------------------------- [AC][AG]AAA[AG]A[AT] -------------------------------------------------------------------------------- Time 17.85 secs. ******************************************************************************** ******************************************************************************** MOTIF AGTGGTTA MEME-5 width = 8 sites = 14 llr = 138 E-value = 1.8e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-5 Description -------------------------------------------------------------------------------- Simplified A a::::::9 pos.-specific C ::1::::: probability G :9:aa::1 matrix T :19::aa: bits 2.0 * **** 1.8 * **** 1.6 * **** 1.4 ******** Relative 1.2 ******** Entropy 1.0 ******** (14.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AGTGGTTA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:6158772-6158852 19 1.49e-05 GTCATGTCCG AGTGGTTA AGGAGATTGA chrX:12843647-12843727 54 1.49e-05 CTCGTGGTGT AGTGGTTA TCACATCTGT chrX:4444225-4444305 50 1.49e-05 CATGTGGTCT AGTGGTTA GGATTCGTGG chrX:8971602-8971682 11 1.49e-05 GTCATGTCCG AGTGGTTA AGGAGATTGA chrV:15553988-15554068 55 1.49e-05 TGCTTAGTAT AGTGGTTA GTACTCCACG chrV:53446-53526 43 1.49e-05 cgcatggccg agtggtta gtacgtatgc chrII:5293403-5293483 62 1.49e-05 GTTGTGGTCT AGTGGTTA GGATTTATGG chrIV:842780-842860 42 1.49e-05 CATGTGGTCT AGTGGTTA GGATTCGTGG chrII:3439416-3439496 57 2.98e-05 GGGCCCGGCA AGTGGTTG ACCGGTTGGC chrII:6248650-6248730 13 2.98e-05 TCAATGGCGG AGTGGTTG TATGTGCTAT chrII:8547157-8547237 3 5.99e-05 GT ATTGGTTA ACATGTGTGT chrX:8925616-8925696 38 5.99e-05 TCCATGGTGT AGCGGTTA GCACTCATGA chrIV:5334692-5334772 33 5.99e-05 TCCATGGTGT AGCGGTTA GCACTCAGGA chrIII:3476296-3476376 11 5.99e-05 GATTAGAGAA ATTGGTTA TTTGGGAGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:6158772-6158852 1.5e-05 18_[+5]_54 chrX:12843647-12843727 1.5e-05 53_[+5]_19 chrX:4444225-4444305 1.5e-05 49_[+5]_23 chrX:8971602-8971682 1.5e-05 10_[+5]_62 chrV:15553988-15554068 1.5e-05 54_[+5]_18 chrV:53446-53526 1.5e-05 42_[+5]_30 chrII:5293403-5293483 1.5e-05 61_[+5]_11 chrIV:842780-842860 1.5e-05 41_[+5]_31 chrII:3439416-3439496 3e-05 56_[+5]_16 chrII:6248650-6248730 3e-05 12_[+5]_60 chrII:8547157-8547237 6e-05 2_[+5]_70 chrX:8925616-8925696 6e-05 37_[+5]_35 chrIV:5334692-5334772 6e-05 32_[+5]_40 chrIII:3476296-3476376 6e-05 10_[+5]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGTGGTTA width=8 seqs=14 chrIII:6158772-6158852 ( 19) AGTGGTTA 1 chrX:12843647-12843727 ( 54) AGTGGTTA 1 chrX:4444225-4444305 ( 50) AGTGGTTA 1 chrX:8971602-8971682 ( 11) AGTGGTTA 1 chrV:15553988-15554068 ( 55) AGTGGTTA 1 chrV:53446-53526 ( 43) AGTGGTTA 1 chrII:5293403-5293483 ( 62) AGTGGTTA 1 chrIV:842780-842860 ( 42) AGTGGTTA 1 chrII:3439416-3439496 ( 57) AGTGGTTG 1 chrII:6248650-6248730 ( 13) AGTGGTTG 1 chrII:8547157-8547237 ( 3) ATTGGTTA 1 chrX:8925616-8925696 ( 38) AGCGGTTA 1 chrIV:5334692-5334772 ( 33) AGCGGTTA 1 chrIII:3476296-3476376 ( 11) ATTGGTTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.9532 E= 1.8e+002 201 -1045 -1045 -1045 -1045 -1045 179 -82 -1045 -82 -1045 176 -1045 -1045 201 -1045 -1045 -1045 201 -1045 -1045 -1045 -1045 199 -1045 -1045 -1045 199 179 -1045 -79 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.8e+002 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.857143 0.142857 0.000000 0.142857 0.000000 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.857143 0.000000 0.142857 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGGTTA MEME-5 regular expression -------------------------------------------------------------------------------- AGTGGTTA -------------------------------------------------------------------------------- Time 21.40 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:5056378-5056458 9.32e-01 80 chrI:933475-933555 9.78e-01 80 chrIII:1653855-1653935 2.30e-01 80 chrIII:931568-931648 8.35e-01 80 chrIII:3499998-3500078 4.42e-01 80 chrII:13986224-13986304 9.99e-01 80 chrX:8156147-8156227 8.19e-01 80 chrX:3969536-3969616 6.78e-01 80 chrIII:1659724-1659804 3.68e-01 80 chrI:1069255-1069335 4.44e-02 53_[+2(3.19e-05)]_19 chrI:6136593-6136673 7.25e-02 57_[+1(9.32e-05)]_15 chrIV:14576620-14576700 8.07e-02 16_[+1(1.56e-05)]_56 chrV:7230978-7231058 2.77e-01 80 chrII:14635363-14635443 2.67e-01 80 chrIV:3233441-3233521 1.22e-01 72_[+4(4.22e-05)] chrI:1575713-1575793 1.26e-02 60_[+1(9.32e-05)]_12 chrX:9622787-9622867 2.72e-02 51_[+1(4.67e-05)]_21 chrIII:3664379-3664459 9.26e-01 80 chrII:2570543-2570623 2.97e-01 29_[+4(7.06e-05)]_43 chrI:5308390-5308470 3.65e-01 80 chrII:11749320-11749400 1.42e-02 23_[+4(1.39e-05)]_49 chrIV:842780-842860 8.60e-02 41_[+5(1.49e-05)]_31 chrIII:3476296-3476376 2.57e-02 10_[+5(5.99e-05)]_62 chrV:19723096-19723176 8.52e-01 80 chrX:1021894-1021974 1.57e-01 80 chrIV:2639828-2639908 1.52e-01 80 chrIII:10857018-10857098 7.90e-01 80 chrI:14620821-14620901 1.24e-01 2_[+4(5.61e-05)]_18_[+4(1.39e-05)]_\ 44 chrV:14783844-14783924 1.88e-02 18_[+4(5.61e-05)]_54 chrIV:5334692-5334772 8.17e-02 32_[+5(5.99e-05)]_40 chrII:7001603-7001683 8.99e-01 80 chrIII:8653109-8653189 7.03e-01 80 chrV:12510127-12510207 1.00e+00 80 chrV:20852206-20852286 7.91e-01 80 chrI:1175869-1175949 8.43e-01 80 chrIV:13084053-13084133 8.26e-01 80 chrX:16928241-16928321 6.87e-03 44_[+1(1.56e-05)]_28 chrI:9268930-9269010 7.27e-02 80 chrIV:16382324-16382404 9.29e-01 80 chrX:14115666-14115746 7.06e-01 80 chrIV:16776062-16776142 9.03e-01 80 chrX:3994610-3994690 3.70e-01 80 chrV:12024443-12024523 6.68e-01 80 chrIV:7489378-7489458 2.88e-02 80 chrIII:1668611-1668691 1.20e-01 63_[+4(1.39e-05)]_9 chrI:10772264-10772344 4.75e-01 80 chrX:10821340-10821420 1.61e-02 1_[+1(1.56e-05)]_71 chrII:7708727-7708807 4.88e-01 80 chrX:12890294-12890374 2.29e-05 5_[+1(4.67e-05)]_25_[+2(1.59e-05)]_\ [+3(3.09e-05)]_26 chrII:4238029-4238109 9.78e-01 80 chrX:16602474-16602554 2.05e-01 80 chrIII:5769879-5769959 9.55e-01 80 chrIII:7642155-7642235 4.55e-02 17_[+1(1.56e-05)]_55 chrV:4510552-4510632 6.74e-01 80 chrV:11449529-11449609 8.82e-01 80 chrI:2717542-2717622 4.51e-01 80 chrIII:671198-671278 7.32e-01 80 chrII:3267920-3268000 7.29e-02 80 chrX:4813439-4813519 9.98e-01 80 chrI:3246586-3246666 9.54e-01 80 chrII:6721763-6721843 1.30e-01 66_[+1(3.12e-05)]_6 chrIV:14013852-14013932 2.38e-04 [+2(1.59e-05)]_[+3(3.09e-05)]_64 chrIV:5078193-5078273 5.78e-01 80 chrII:5293403-5293483 4.40e-02 61_[+5(1.49e-05)]_11 chrIV:8229007-8229087 4.54e-01 80 chrIII:3175142-3175222 9.33e-01 80 chrI:7535450-7535530 1.13e-01 80 chrI:820148-820228 5.09e-01 80 chrIII:12399918-12399998 1.92e-01 80 chrX:9296747-9296827 8.32e-01 80 chrII:5577209-5577289 1.31e-01 80 chrII:6565270-6565350 1.89e-01 80 chrIII:1601628-1601708 8.47e-02 80 chrI:10807264-10807344 5.39e-01 80 chrIII:349587-349667 7.45e-02 80 chrV:13393571-13393651 4.29e-01 80 chrII:11637431-11637511 5.00e-01 80 chrV:53446-53526 1.34e-01 42_[+5(1.49e-05)]_30 chrIV:13013053-13013133 3.02e-01 80 chrIII:13225153-13225233 1.48e-02 23_[+1(6.20e-05)]_49 chrV:15553988-15554068 1.52e-01 54_[+5(1.49e-05)]_18 chrIV:10503896-10503976 1.58e-01 80 chrIV:16399118-16399198 7.83e-01 80 chrIII:4428929-4429009 4.07e-05 1_[+4(4.22e-05)]_29_[+1(4.67e-05)]_\ 25_[+2(1.59e-05)]_1 chrX:14804875-14804955 9.15e-01 80 chrII:3567785-3567865 1.27e-03 26_[+2(1.59e-05)]_1_[+3(1.53e-05)]_\ 37 chrIV:3399183-3399263 4.73e-01 80 chrIII:1122409-1122489 8.92e-01 80 chrIII:315674-315754 6.63e-01 80 chrII:7003160-7003240 4.04e-01 80 chrII:6248650-6248730 1.00e-02 12_[+5(2.98e-05)]_60 chrX:3348010-3348090 2.18e-01 80 chrX:9078315-9078395 9.98e-01 80 chrX:13781607-13781687 8.00e-01 80 chrI:6532080-6532160 7.44e-01 80 chrIV:7623900-7623980 6.69e-01 80 chrV:12780397-12780477 1.56e-01 3_[+1(9.32e-05)]_69 chrIII:13721356-13721436 8.71e-01 80 chrX:8925616-8925696 7.31e-03 37_[+5(5.99e-05)]_35 chrIII:8106637-8106717 4.18e-01 80 chrX:5319375-5319455 2.17e-05 57_[+2(4.83e-05)]_1_[+3(1.53e-05)]_\ 6 chrIV:1388167-1388247 3.19e-03 36_[+4(4.22e-05)]_19_[+1(1.56e-05)]_\ 9 chrIII:640574-640654 8.50e-01 80 chrX:8971602-8971682 6.31e-06 10_[+5(1.49e-05)]_25_[+2(3.19e-05)]_\ 9_[+1(3.12e-05)]_12 chrI:8530121-8530201 3.12e-02 21_[+1(1.56e-05)]_51 chrX:1443636-1443716 2.95e-01 80 chrI:9605776-9605856 7.57e-03 42_[+1(1.56e-05)]_30 chrII:2565038-2565118 7.58e-01 80 chrII:4942530-4942610 5.82e-01 80 chrII:2860262-2860342 4.85e-01 80 chrIV:1981111-1981191 3.26e-01 80 chrIV:358987-359067 5.90e-01 80 chrIV:658213-658293 1.18e-01 80 chrX:13415105-13415185 9.95e-07 5_[+4(7.06e-05)]_16_[+1(9.32e-05)]_\ 25_[+2(6.38e-05)]_2_[+3(1.53e-05)] chrV:15551830-15551910 6.95e-01 80 chrIII:9104173-9104253 6.70e-04 23_[+4(7.06e-05)]_17_[+1(6.20e-05)]_\ 24 chrII:12042349-12042429 4.67e-02 80 chrI:3908742-3908822 8.34e-01 80 chrIV:9191336-9191416 6.47e-01 80 chrIV:16946909-16946989 5.99e-01 80 chrX:4444225-4444305 5.72e-02 49_[+5(1.49e-05)]_23 chrX:8995773-8995853 9.88e-01 80 chrII:3439416-3439496 1.34e-05 25_[+2(1.59e-05)]_1_[+3(1.53e-05)]_\ 14_[+5(2.98e-05)]_16 chrX:8646503-8646583 1.84e-02 80 chrIII:7030556-7030636 1.28e-04 15_[+1(6.20e-05)]_25_[+2(3.19e-05)]_\ [+3(4.62e-05)]_16 chrI:488370-488450 1.54e-01 58_[+2(7.94e-05)]_14 chrIII:1824646-1824726 2.81e-02 26_[+4(1.39e-05)]_46 chrIII:4426880-4426960 9.08e-01 80 chrIII:1600842-1600922 1.84e-02 80 chrI:7082964-7083044 9.97e-01 80 chrX:1524587-1524667 7.82e-01 80 chrI:13421232-13421312 7.74e-01 80 chrI:14945675-14945755 4.29e-01 80 chrIII:8650382-8650462 9.48e-02 13_[+1(1.56e-05)]_59 chrIII:3916754-3916834 3.36e-01 80 chrV:11239380-11239460 6.78e-01 80 chrX:12843647-12843727 3.26e-02 53_[+5(1.49e-05)]_19 chrIII:3869320-3869400 5.78e-01 80 chrI:11978693-11978773 3.02e-01 80 chrV:5284758-5284838 9.84e-01 80 chrIII:4378689-4378769 7.19e-01 80 chrX:12367610-12367690 2.52e-03 21_[+4(5.61e-05)]_17_[+1(1.56e-05)]_\ 26 chrI:14721561-14721641 1.44e-01 80 chrX:7794531-7794611 5.97e-01 80 chrI:6366258-6366338 7.86e-01 80 chrX:5022903-5022983 5.45e-01 80 chrIV:9477718-9477798 5.42e-01 80 chrX:1837829-1837909 8.37e-03 5_[+4(9.84e-05)]_[+1(6.20e-05)]_59 chrIV:7084898-7084978 3.20e-01 80 chrX:13264680-13264760 2.78e-05 17_[+1(6.20e-05)]_36_[+2(1.59e-05)]_\ 1_[+3(1.53e-05)]_2 chrIII:5211404-5211484 6.23e-01 80 chrII:9566185-9566265 9.33e-01 80 chrV:6785249-6785329 7.90e-01 80 chrI:7772585-7772665 5.30e-01 80 chrV:13962183-13962263 9.06e-02 80 chrX:5407383-5407463 6.08e-03 14_[+4(5.61e-05)]_58 chrIV:11026161-11026241 8.98e-01 80 chrIII:4568713-4568793 6.49e-01 80 chrIII:1424463-1424543 7.09e-01 80 chrIV:2805635-2805715 3.99e-01 80 chrII:10169559-10169639 9.92e-01 80 chrIII:4171146-4171226 5.76e-01 80 chrIV:3524754-3524834 9.63e-01 80 chrX:5686275-5686355 4.73e-01 80 chrI:10593145-10593225 1.15e-01 80 chrIII:8768068-8768148 5.64e-01 80 chrIV:3552204-3552284 5.28e-01 80 chrV:19126018-19126098 9.09e-01 80 chrX:9637866-9637946 1.97e-06 [+1(4.67e-05)]_25_[+2(1.59e-05)]_\ [+3(1.53e-05)]_31 chrI:13310331-13310411 4.54e-06 61_[+2(1.59e-05)]_[+3(1.53e-05)]_3 chrX:16604736-16604816 4.00e-02 65_[+5(9.01e-05)]_7 chrII:14063232-14063312 7.39e-01 80 chrX:5707956-5708036 9.14e-01 80 chrIII:11371422-11371502 1.31e-01 80 chrX:10963771-10963851 9.16e-01 80 chrII:3521518-3521598 8.41e-01 80 chrI:13160988-13161068 9.71e-01 80 chrV:11610649-11610729 2.01e-01 1_[+4(7.06e-05)]_57_[+4(9.84e-05)]_\ 6 chrI:2410102-2410182 3.88e-01 80 chrIII:11091978-11092058 5.19e-01 80 chrIV:322656-322736 9.97e-01 80 chrIII:4004410-4004490 2.84e-01 80 chrIV:143950-144030 7.17e-01 80 chrIV:17087588-17087668 7.75e-01 80 chrI:5379925-5380005 6.92e-01 80 chrIII:4414253-4414333 3.03e-01 80 chrV:10579043-10579123 1.22e-01 45_[+4(1.39e-05)]_27 chrII:14349680-14349760 5.49e-01 80 chrI:3873928-3874008 1.00e+00 80 chrX:11643886-11643966 6.45e-01 80 chrIII:535422-535502 5.80e-02 24_[+1(3.12e-05)]_48 chrII:5292264-5292344 5.13e-01 80 chrII:5772928-5773008 3.53e-02 2_[+1(1.56e-05)]_70 chrX:10132708-10132788 2.90e-02 23_[+1(3.12e-05)]_49 chrIII:9861673-9861753 5.02e-01 80 chrX:10188576-10188656 8.16e-01 80 chrI:10927470-10927550 5.84e-01 80 chrV:6888958-6889038 5.84e-01 80 chrV:4731513-4731593 5.44e-01 80 chrX:12458187-12458267 2.65e-05 3_[+1(4.67e-05)]_25_[+2(1.59e-05)]_\ [+3(1.53e-05)]_28 chrIII:9629930-9630010 4.61e-01 80 chrIII:6133630-6133710 7.51e-01 80 chrIV:14838323-14838403 3.00e-02 11_[+1(1.56e-05)]_61 chrX:15742043-15742123 3.72e-02 71_[+1(1.56e-05)]_1 chrI:5176408-5176488 4.34e-01 80 chrX:6371405-6371485 2.17e-01 80 chrX:6903161-6903241 1.60e-01 80 chrII:10388192-10388272 6.05e-01 80 chrV:11113376-11113456 3.68e-01 80 chrI:14737443-14737523 5.51e-01 80 chrX:1379568-1379648 5.30e-03 49_[+1(1.56e-05)]_23 chrX:8386199-8386279 1.26e-02 58_[+1(9.32e-05)]_14 chrX:13121316-13121396 9.55e-01 80 chrI:13330930-13331010 4.79e-01 80 chrV:13003541-13003621 2.41e-04 15_[+2(1.59e-05)]_[+3(1.53e-05)]_49 chrI:1823188-1823268 6.40e-01 80 chrV:6709178-6709258 9.21e-01 80 chrIII:5305927-5306007 2.16e-01 80 chrIII:10407237-10407317 1.06e-01 80 chrII:11636019-11636099 4.08e-01 80 chrII:14405345-14405425 9.59e-01 80 chrII:11959401-11959481 2.18e-01 80 chrIII:6158772-6158852 6.31e-06 18_[+5(1.49e-05)]_25_[+2(3.19e-05)]_\ 9_[+1(3.12e-05)]_4 chrIII:5295030-5295110 1.40e-01 80 chrX:4523994-4524074 7.14e-01 80 chrII:8547157-8547237 1.45e-01 2_[+5(5.99e-05)]_70 chrX:10145173-10145253 1.70e-02 36_[+1(3.12e-05)]_36 chrIII:5555076-5555156 7.75e-02 80 chrIII:6887714-6887794 3.98e-08 [+4(1.39e-05)]_20_[+1(1.56e-05)]_25_\ [+2(1.59e-05)]_1_[+3(1.53e-05)]_2 chrI:1958532-1958612 3.64e-01 70_[+4(9.84e-05)]_2 chrX:15492882-15492962 6.69e-01 80 chrV:7060534-7060614 8.55e-01 80 chrX:13511959-13512039 4.43e-02 25_[+1(4.67e-05)]_47 chrIII:4470875-4470955 7.53e-02 25_[+1(9.32e-05)]_47 chrII:9774819-9774899 2.46e-01 80 chrII:8107240-8107320 5.87e-01 80 chrX:12563787-12563867 3.95e-01 80 chrX:3697739-3697819 4.13e-01 80 chrX:6593552-6593632 8.02e-01 80 chrIV:620537-620617 8.76e-01 80 chrIV:683089-683169 8.26e-01 80 chrV:13789621-13789701 7.34e-01 80 chrIII:10624767-10624847 2.96e-03 22_[+2(3.19e-05)]_[+3(4.62e-05)]_42 chrX:6292303-6292383 5.42e-04 22_[+2(1.59e-05)]_[+3(3.09e-05)]_42 chrIV:16491728-16491808 3.59e-02 29_[+2(1.59e-05)]_43 chrIV:8253017-8253097 7.71e-01 80 chrX:2613218-2613298 5.81e-01 80 chrV:1003922-1004002 7.24e-01 80 chrII:8569439-8569519 3.79e-01 80 chrIV:11549883-11549963 2.69e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************