******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/Y116A8C.19.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrIII:13187917-13187997 1.0000 80 chrIV:16415741-16415821 1.0000 80 chrIII:4912475-4912555 1.0000 80 chrV:265394-265474 1.0000 80 chrI:933477-933557 1.0000 80 chrV:2127186-2127266 1.0000 80 chrI:4247558-4247638 1.0000 80 chrII:13117279-13117359 1.0000 80 chrIII:12273775-12273855 1.0000 80 chrIII:3476306-3476386 1.0000 80 chrII:6776810-6776890 1.0000 80 chrIII:10064289-10064369 1.0000 80 chrIV:11315035-11315115 1.0000 80 chrIV:16995578-16995658 1.0000 80 chrII:15089583-15089663 1.0000 80 chrV:15082454-15082534 1.0000 80 chrI:13421157-13421237 1.0000 80 chrIV:8973710-8973790 1.0000 80 chrIII:8144736-8144816 1.0000 80 chrIII:9465582-9465662 1.0000 80 chrII:10538082-10538162 1.0000 80 chrII:6061660-6061740 1.0000 80 chrIII:11746884-11746964 1.0000 80 chrII:9591243-9591323 1.0000 80 chrIV:3803415-3803495 1.0000 80 chrV:5917855-5917935 1.0000 80 chrI:5164994-5165074 1.0000 80 chrIII:9868289-9868369 1.0000 80 chrV:18981147-18981227 1.0000 80 chrIII:11290673-11290753 1.0000 80 chrV:16022738-16022818 1.0000 80 chrV:13313183-13313263 1.0000 80 chrIII:5068983-5069063 1.0000 80 chrIII:5349406-5349486 1.0000 80 chrIII:5871906-5871986 1.0000 80 chrII:4791416-4791496 1.0000 80 chrIII:5722010-5722090 1.0000 80 chrIII:12673532-12673612 1.0000 80 chrV:7084904-7084984 1.0000 80 chrII:6913458-6913538 1.0000 80 chrIII:11091796-11091876 1.0000 80 chrV:2638683-2638763 1.0000 80 chrV:16401685-16401765 1.0000 80 chrII:10395530-10395610 1.0000 80 chrV:10526073-10526153 1.0000 80 chrIII:7199051-7199131 1.0000 80 chrIII:8307525-8307605 1.0000 80 chrV:11029463-11029543 1.0000 80 chrV:20424923-20425003 1.0000 80 chrI:2097080-2097160 1.0000 80 chrIV:7816550-7816630 1.0000 80 chrIV:9074374-9074454 1.0000 80 chrIII:10621378-10621458 1.0000 80 chrIV:10483876-10483956 1.0000 80 chrIII:931567-931647 1.0000 80 chrV:10356089-10356169 1.0000 80 chrV:10320351-10320431 1.0000 80 chrI:14756507-14756587 1.0000 80 chrIV:16415241-16415321 1.0000 80 chrI:3987226-3987306 1.0000 80 chrII:4603180-4603260 1.0000 80 chrIII:10856964-10857044 1.0000 80 chrI:8511428-8511508 1.0000 80 chrIV:6206536-6206616 1.0000 80 chrIV:6631939-6632019 1.0000 80 chrIII:4905485-4905565 1.0000 80 chrV:10894785-10894865 1.0000 80 chrIII:11946524-11946604 1.0000 80 chrIV:192212-192292 1.0000 80 chrV:12870079-12870159 1.0000 80 chrX:15849553-15849633 1.0000 80 chrV:13468318-13468398 1.0000 80 chrV:13556803-13556883 1.0000 80 chrIII:8850781-8850861 1.0000 80 chrIV:6321849-6321929 1.0000 80 chrI:461686-461766 1.0000 80 chrIV:5364320-5364400 1.0000 80 chrV:14055182-14055262 1.0000 80 chrII:9940598-9940678 1.0000 80 chrIV:796698-796778 1.0000 80 chrIII:4930421-4930501 1.0000 80 chrIII:5308413-5308493 1.0000 80 chrII:14795118-14795198 1.0000 80 chrIII:11317293-11317373 1.0000 80 chrIII:12351475-12351555 1.0000 80 chrI:11374399-11374479 1.0000 80 chrI:8615202-8615282 1.0000 80 chrII:2889357-2889437 1.0000 80 chrIII:7520798-7520878 1.0000 80 chrII:4740157-4740237 1.0000 80 chrIII:8319276-8319356 1.0000 80 chrIV:410677-410757 1.0000 80 chrII:4299388-4299468 1.0000 80 chrV:15085601-15085681 1.0000 80 chrIII:11119505-11119585 1.0000 80 chrII:14063272-14063352 1.0000 80 chrIII:783424-783504 1.0000 80 chrII:3502802-3502882 1.0000 80 chrIV:15526635-15526715 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_Y116A8C.19/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/Y116A8C.19.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 99 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 7920 N= 99 sample: seed= 0 hsfrac= 0 searchsize= 7920 norand= no csites= 1000 Letter frequencies in dataset: A 0.257 C 0.227 G 0.244 T 0.273 Background letter frequencies (from file dataset with add-one prior applied): A 0.257 C 0.227 G 0.244 T 0.273 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CKMGGCCR MEME-1 width = 8 sites = 81 llr = 591 E-value = 4.5e-066 ******************************************************************************** -------------------------------------------------------------------------------- Motif CKMGGCCR MEME-1 Description -------------------------------------------------------------------------------- Simplified A :13::::4 pos.-specific C 8:5::aa: probability G 14:a9::4 matrix T 152:1::2 bits 2.1 ** 1.9 * ** 1.7 **** 1.5 **** Relative 1.3 **** Entropy 1.1 * **** (10.5 bits) 0.9 * **** 0.6 * ***** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTCGGCCG consensus GA A sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKMGGCCR MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:11374399-11374479 69 1.05e-05 CGAGCACATC CTCGGCCG TGTA chrV:7084904-7084984 26 1.05e-05 AGAAACCAAC CTCGGCCG CACTGCGCCG chrII:4791416-4791496 55 1.05e-05 TAACATCCGA CTCGGCCG CCGGCCGTGT chrII:10538082-10538162 67 1.05e-05 ATAATTATTT CTCGGCCG TGTACT chrIII:4912475-4912555 52 1.05e-05 CATTCGGATT CTCGGCCG TGGCCTAGAA chrIV:192212-192292 28 2.16e-05 AGCACGATTT CTCGGCCA CGCGCCGTGT chrIII:4905485-4905565 8 2.16e-05 CGAGAGA CTCGGCCA CGAATTGGGT chrIV:6206536-6206616 58 2.16e-05 CGTGCTGGTT CTCGGCCA TTTGGTGGGA chrV:10320351-10320431 19 2.16e-05 CACGCGTTCT CTCGGCCA TGTACTCCTC chrIV:10483876-10483956 34 2.16e-05 AGCATAAATC CTCGGCCA CGGTTTGTGG chrIII:12673532-12673612 49 2.16e-05 GAGACCCCGA CTCGGCCA GGCAAGtttt chrI:461686-461766 59 3.10e-05 CTAACATCTC CGCGGCCG CCCAGTGGTG chrII:4603180-4603260 69 3.10e-05 AGAAAACCCT CGCGGCCG CAGT chrIII:8307525-8307605 17 3.10e-05 TCCGAAATAA CGCGGCCG AATTTTTGTG chrV:16401685-16401765 29 3.10e-05 CTCTGGTGGC CGCGGCCG AGGTTTCTCC chrV:2638683-2638763 25 3.10e-05 TTGCGGTGGC CGCGGCCG TGAAAATGCG chrIV:8973710-8973790 30 3.10e-05 TCCTAGTCCG CGCGGCCG TGTAGTCCTC chrII:15089583-15089663 34 3.10e-05 TCCTAGGCCA CGCGGCCG TGTAGTCCTC chrI:4247558-4247638 47 3.10e-05 TCCTAGGCCA CGCGGCCG CGTACTCCTC chrII:2889357-2889437 48 4.09e-05 AATCGGTCGT CGCGGCCA CGGAGTCCTC chrIII:12351475-12351555 63 4.09e-05 AAACCTCGGT CGCGGCCA GGAAATTTTT chrIII:4930421-4930501 55 4.09e-05 GTCAAATAGC CGCGGCCA CGGCCATGAG chrIII:9868289-9868369 42 4.09e-05 ACCTCTAGTC CGCGGCCA CCGGAAAAGC chrII:6913458-6913538 47 5.29e-05 GGAGAGTTTT CTAGGCCG TGTGTGCCGC chrV:13313183-13313263 66 5.29e-05 CAATCGATTT CTAGGCCG TCGGCCG chrV:15082454-15082534 49 5.29e-05 TTGTCGGATT CTAGGCCG CATGCGCAGA chrII:3502802-3502882 22 6.54e-05 TTGGAGTTTT CTAGGCCA CGAGTTGCAT chrIII:8319276-8319356 50 6.54e-05 CATCACAATT CTAGGCCA TTTTCAAAGA chrII:4740157-4740237 27 6.54e-05 GTGCGAGTTT CTAGGCCA CGCGGAAATG chrIII:7520798-7520878 59 6.54e-05 AATTTGGATT CTAGGCCA TGCAGTCTTT chrI:8615202-8615282 47 6.54e-05 CAAACTGTTT CTAGGCCA TCTGTACATT chrIV:6321849-6321929 46 6.54e-05 AAACGGTAAA CTAGGCCA GGGGAAATGT chrV:13556803-13556883 53 6.54e-05 GCGGAGTTTT CTAGGCCA CCACTCAAGA chrV:13468318-13468398 54 6.54e-05 TGTGCGTTTT CTAGGCCA TTTTGGCGTG chrI:8511428-8511508 29 6.54e-05 ACGGAGAAAG CTAGGCCA TAAGTGGGAT chrV:10356089-10356169 49 6.54e-05 GAGGGATATT CTAGGCCA TATGTAGCAA chrIII:5722010-5722090 45 6.54e-05 GCGGAGGTTT CTAGGCCA CCGGCTGTGT chrIII:5349406-5349486 56 6.54e-05 AAAAAGAAAG CTAGGCCA CCGATGCGGA chrV:18981147-18981227 41 6.54e-05 TCAGAGTTTC CTAGGCCA CCGCCGGTGT chrIII:8144736-8144816 72 6.54e-05 GTTCTCAAAT CTAGGCCA T chrIII:12273775-12273855 31 6.54e-05 GTTGTGGTTT CTAGGCCA GGGGTTTTGT chrII:13117279-13117359 36 6.54e-05 CCCCGAAATG CTAGGCCA CGCGTCGCGT chrII:14795118-14795198 48 1.36e-04 ATCTCATGGA CGCGGCCT AGGATTCTCT chrV:10894785-10894865 6 1.36e-04 TGTGT CGCGGCCT AGAAATGTTT chrIV:15526635-15526715 34 1.57e-04 GAGAGGACTA CACGGCCG AGATTCCGAC chrIII:783424-783504 50 1.57e-04 GTTTGAAATT CGTGGCCG AGGCCTAGGA chrV:14055182-14055262 43 1.57e-04 TACACGGCTG CGTGGCCG ATATTTCTTC chrI:3987226-3987306 68 1.57e-04 GAGAGGAGTA CACGGCCG AGAAT chrIII:5871906-5871986 36 1.57e-04 GAGAGGAGTG CACGGCCG AGAAAAGTCC chrV:16022738-16022818 71 1.57e-04 GTGGTGGCCG CGTGGCCG CG chrIV:16415741-16415821 40 1.57e-04 GAGAGGAGTA CACGGCCG AGTGGCCTAG chrIV:16995578-16995658 34 1.79e-04 TTTCCTCTTC CACGGCCA CGCGGCCCCC chrIII:8850781-8850861 56 2.05e-04 GATGCAAGTG TTCGGCCG TCGTGGAAAT chrII:10395530-10395610 38 2.05e-04 AGAGAAAAAC TTCGGCCG TGTAGTCCTC chrIV:6631939-6632019 66 2.64e-04 TTTTTCTTCG GTCGGCCG TGGGTCG chrIV:11315035-11315115 50 2.64e-04 TAGAATTTCG TGCGGCCG TGGCTGAGTT chrIV:9074374-9074454 38 3.24e-04 TTTTGCCCGC GGCGGCCG CGTTTGTGAA chrIV:16415241-16415321 42 3.59e-04 TACACGGCAG CGTGGCCT AGAAAACTCT chrI:5164994-5165074 41 3.59e-04 ACACAATGGC CGTGGCCT AAAAATCTCA chrIII:10064289-10064369 41 3.59e-04 CCGAGGTGGC CGTGGCCT AGAAGTGGCG chrIII:5308413-5308493 41 3.71e-04 GCCGGGAGGC CATGGCCG AGTTTTGACC chrV:10526073-10526153 49 4.13e-04 GATAAAAAAG TTAGGCCA TCCTTTCTCA chrIV:3803415-3803495 42 4.13e-04 CCGGAGATTT TTAGGCCA CACGACCGTG chrV:11029463-11029543 40 6.18e-04 TTTCGATTTC TGCGGCCT CGTCGAGCAT chrIV:5364320-5364400 6 7.10e-04 AAGGC TACGGCCA TCTGTGCACT chrII:6776810-6776890 44 7.10e-04 CATTCCATGC GGCGGCCT AGAAAATTAT chrIII:11290673-11290753 60 7.32e-04 GTACACACCG GGTGGCCG AGTGGGGATT chrIII:10621378-10621458 52 7.92e-04 GTCCGCAGCG CATGGCCT AGCGACGGGG chrV:5917855-5917935 60 7.92e-04 AATGAGATTT CTAGTCCG CATTAAACGG chrII:9591243-9591323 35 7.92e-04 AAAAACAATT CTAGTCCG CGCGTCGTGT chrV:2127186-2127266 44 7.92e-04 TGCTAGTCCT CCCGGCCG TGTACTTCAC chrII:6061660-6061740 5 9.25e-04 GCAT CTTGTCCG TGAGGAGTAC chrIV:7816550-7816630 38 1.12e-03 TACACCACCG TGTGGCCT AGGAAACTCT chrIII:9465582-9465662 49 1.12e-03 CTACGAGCGC GTTGGCCT AGAAAACGCA chrIII:5068983-5069063 11 1.15e-03 GACTAGTGTT TATGGCCG AAGAAATGCA chrI:2097080-2097160 1 1.20e-03 . GGTGGCCT AGAACTCGAA chrV:20424923-20425003 49 1.20e-03 TTTTCCCAAT GGTGGCCT AGAAAACCCC chrV:12870079-12870159 67 1.25e-03 CGCGCACTTC CTCTGCCA TTTCAT chrII:14063272-14063352 10 1.46e-03 TGTAGTTTT TGCGTCCA TGGTGGTGTT chrIII:11746884-11746964 36 1.76e-03 GACGAGGTGC GATGGCCT ACAAAACTCC chrIII:13187917-13187997 9 2.01e-03 CCACCGAT TTTGTCCA CGTGTAGTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKMGGCCR MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:11374399-11374479 1.1e-05 68_[+1]_4 chrV:7084904-7084984 1.1e-05 25_[+1]_47 chrII:4791416-4791496 1.1e-05 54_[+1]_18 chrII:10538082-10538162 1.1e-05 66_[+1]_6 chrIII:4912475-4912555 1.1e-05 51_[+1]_21 chrIV:192212-192292 2.2e-05 27_[+1]_45 chrIII:4905485-4905565 2.2e-05 7_[+1]_65 chrIV:6206536-6206616 2.2e-05 57_[+1]_15 chrV:10320351-10320431 2.2e-05 18_[+1]_54 chrIV:10483876-10483956 2.2e-05 33_[+1]_39 chrIII:12673532-12673612 2.2e-05 48_[+1]_24 chrI:461686-461766 3.1e-05 58_[+1]_14 chrII:4603180-4603260 3.1e-05 68_[+1]_4 chrIII:8307525-8307605 3.1e-05 16_[+1]_56 chrV:16401685-16401765 3.1e-05 28_[+1]_44 chrV:2638683-2638763 3.1e-05 24_[+1]_48 chrIV:8973710-8973790 3.1e-05 29_[+1]_43 chrII:15089583-15089663 3.1e-05 33_[+1]_39 chrI:4247558-4247638 3.1e-05 46_[+1]_26 chrII:2889357-2889437 4.1e-05 47_[+1]_25 chrIII:12351475-12351555 4.1e-05 62_[+1]_10 chrIII:4930421-4930501 4.1e-05 54_[+1]_18 chrIII:9868289-9868369 4.1e-05 41_[+1]_31 chrII:6913458-6913538 5.3e-05 46_[+1]_26 chrV:13313183-13313263 5.3e-05 65_[+1]_7 chrV:15082454-15082534 5.3e-05 48_[+1]_24 chrII:3502802-3502882 6.5e-05 21_[+1]_51 chrIII:8319276-8319356 6.5e-05 49_[+1]_23 chrII:4740157-4740237 6.5e-05 26_[+1]_46 chrIII:7520798-7520878 6.5e-05 58_[+1]_14 chrI:8615202-8615282 6.5e-05 46_[+1]_26 chrIV:6321849-6321929 6.5e-05 45_[+1]_27 chrV:13556803-13556883 6.5e-05 52_[+1]_20 chrV:13468318-13468398 6.5e-05 53_[+1]_19 chrI:8511428-8511508 6.5e-05 28_[+1]_44 chrV:10356089-10356169 6.5e-05 48_[+1]_24 chrIII:5722010-5722090 6.5e-05 44_[+1]_28 chrIII:5349406-5349486 6.5e-05 55_[+1]_17 chrV:18981147-18981227 6.5e-05 40_[+1]_32 chrIII:8144736-8144816 6.5e-05 71_[+1]_1 chrIII:12273775-12273855 6.5e-05 30_[+1]_42 chrII:13117279-13117359 6.5e-05 35_[+1]_37 chrII:14795118-14795198 0.00014 47_[+1]_25 chrV:10894785-10894865 0.00014 5_[+1]_67 chrIV:15526635-15526715 0.00016 33_[+1]_39 chrIII:783424-783504 0.00016 49_[+1]_23 chrV:14055182-14055262 0.00016 42_[+1]_30 chrI:3987226-3987306 0.00016 67_[+1]_5 chrIII:5871906-5871986 0.00016 35_[+1]_37 chrV:16022738-16022818 0.00016 70_[+1]_2 chrIV:16415741-16415821 0.00016 39_[+1]_33 chrIV:16995578-16995658 0.00018 33_[+1]_39 chrIII:8850781-8850861 0.00021 55_[+1]_17 chrII:10395530-10395610 0.00021 37_[+1]_35 chrIV:6631939-6632019 0.00026 65_[+1]_7 chrIV:11315035-11315115 0.00026 49_[+1]_23 chrIV:9074374-9074454 0.00032 37_[+1]_35 chrIV:16415241-16415321 0.00036 41_[+1]_31 chrI:5164994-5165074 0.00036 40_[+1]_32 chrIII:10064289-10064369 0.00036 40_[+1]_32 chrIII:5308413-5308493 0.00037 40_[+1]_32 chrV:10526073-10526153 0.00041 48_[+1]_24 chrIV:3803415-3803495 0.00041 41_[+1]_31 chrV:11029463-11029543 0.00062 39_[+1]_33 chrIV:5364320-5364400 0.00071 5_[+1]_67 chrII:6776810-6776890 0.00071 43_[+1]_29 chrIII:11290673-11290753 0.00073 59_[+1]_13 chrIII:10621378-10621458 0.00079 51_[+1]_21 chrV:5917855-5917935 0.00079 59_[+1]_13 chrII:9591243-9591323 0.00079 34_[+1]_38 chrV:2127186-2127266 0.00079 43_[+1]_29 chrII:6061660-6061740 0.00093 4_[+1]_68 chrIV:7816550-7816630 0.0011 37_[+1]_35 chrIII:9465582-9465662 0.0011 48_[+1]_24 chrIII:5068983-5069063 0.0011 10_[+1]_62 chrI:2097080-2097160 0.0012 [+1]_72 chrV:20424923-20425003 0.0012 48_[+1]_24 chrV:12870079-12870159 0.0013 66_[+1]_6 chrII:14063272-14063352 0.0015 9_[+1]_63 chrIII:11746884-11746964 0.0018 35_[+1]_37 chrIII:13187917-13187997 0.002 8_[+1]_64 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKMGGCCR MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CKMGGCCR width=8 seqs=81 chrI:11374399-11374479 ( 69) CTCGGCCG 1 chrV:7084904-7084984 ( 26) CTCGGCCG 1 chrII:4791416-4791496 ( 55) CTCGGCCG 1 chrII:10538082-10538162 ( 67) CTCGGCCG 1 chrIII:4912475-4912555 ( 52) CTCGGCCG 1 chrIV:192212-192292 ( 28) CTCGGCCA 1 chrIII:4905485-4905565 ( 8) CTCGGCCA 1 chrIV:6206536-6206616 ( 58) CTCGGCCA 1 chrV:10320351-10320431 ( 19) CTCGGCCA 1 chrIV:10483876-10483956 ( 34) CTCGGCCA 1 chrIII:12673532-12673612 ( 49) CTCGGCCA 1 chrI:461686-461766 ( 59) CGCGGCCG 1 chrII:4603180-4603260 ( 69) CGCGGCCG 1 chrIII:8307525-8307605 ( 17) CGCGGCCG 1 chrV:16401685-16401765 ( 29) CGCGGCCG 1 chrV:2638683-2638763 ( 25) CGCGGCCG 1 chrIV:8973710-8973790 ( 30) CGCGGCCG 1 chrII:15089583-15089663 ( 34) CGCGGCCG 1 chrI:4247558-4247638 ( 47) CGCGGCCG 1 chrII:2889357-2889437 ( 48) CGCGGCCA 1 chrIII:12351475-12351555 ( 63) CGCGGCCA 1 chrIII:4930421-4930501 ( 55) CGCGGCCA 1 chrIII:9868289-9868369 ( 42) CGCGGCCA 1 chrII:6913458-6913538 ( 47) CTAGGCCG 1 chrV:13313183-13313263 ( 66) CTAGGCCG 1 chrV:15082454-15082534 ( 49) CTAGGCCG 1 chrII:3502802-3502882 ( 22) CTAGGCCA 1 chrIII:8319276-8319356 ( 50) CTAGGCCA 1 chrII:4740157-4740237 ( 27) CTAGGCCA 1 chrIII:7520798-7520878 ( 59) CTAGGCCA 1 chrI:8615202-8615282 ( 47) CTAGGCCA 1 chrIV:6321849-6321929 ( 46) CTAGGCCA 1 chrV:13556803-13556883 ( 53) CTAGGCCA 1 chrV:13468318-13468398 ( 54) CTAGGCCA 1 chrI:8511428-8511508 ( 29) CTAGGCCA 1 chrV:10356089-10356169 ( 49) CTAGGCCA 1 chrIII:5722010-5722090 ( 45) CTAGGCCA 1 chrIII:5349406-5349486 ( 56) CTAGGCCA 1 chrV:18981147-18981227 ( 41) CTAGGCCA 1 chrIII:8144736-8144816 ( 72) CTAGGCCA 1 chrIII:12273775-12273855 ( 31) CTAGGCCA 1 chrII:13117279-13117359 ( 36) CTAGGCCA 1 chrII:14795118-14795198 ( 48) CGCGGCCT 1 chrV:10894785-10894865 ( 6) CGCGGCCT 1 chrIV:15526635-15526715 ( 34) CACGGCCG 1 chrIII:783424-783504 ( 50) CGTGGCCG 1 chrV:14055182-14055262 ( 43) CGTGGCCG 1 chrI:3987226-3987306 ( 68) CACGGCCG 1 chrIII:5871906-5871986 ( 36) CACGGCCG 1 chrV:16022738-16022818 ( 71) CGTGGCCG 1 chrIV:16415741-16415821 ( 40) CACGGCCG 1 chrIV:16995578-16995658 ( 34) CACGGCCA 1 chrIII:8850781-8850861 ( 56) TTCGGCCG 1 chrII:10395530-10395610 ( 38) TTCGGCCG 1 chrIV:6631939-6632019 ( 66) GTCGGCCG 1 chrIV:11315035-11315115 ( 50) TGCGGCCG 1 chrIV:9074374-9074454 ( 38) GGCGGCCG 1 chrIV:16415241-16415321 ( 42) CGTGGCCT 1 chrI:5164994-5165074 ( 41) CGTGGCCT 1 chrIII:10064289-10064369 ( 41) CGTGGCCT 1 chrIII:5308413-5308493 ( 41) CATGGCCG 1 chrV:10526073-10526153 ( 49) TTAGGCCA 1 chrIV:3803415-3803495 ( 42) TTAGGCCA 1 chrV:11029463-11029543 ( 40) TGCGGCCT 1 chrIV:5364320-5364400 ( 6) TACGGCCA 1 chrII:6776810-6776890 ( 44) GGCGGCCT 1 chrIII:11290673-11290753 ( 60) GGTGGCCG 1 chrIII:10621378-10621458 ( 52) CATGGCCT 1 chrV:5917855-5917935 ( 60) CTAGTCCG 1 chrII:9591243-9591323 ( 35) CTAGTCCG 1 chrV:2127186-2127266 ( 44) CCCGGCCG 1 chrII:6061660-6061740 ( 5) CTTGTCCG 1 chrIV:7816550-7816630 ( 38) TGTGGCCT 1 chrIII:9465582-9465662 ( 49) GTTGGCCT 1 chrIII:5068983-5069063 ( 11) TATGGCCG 1 chrI:2097080-2097160 ( 1) GGTGGCCT 1 chrV:20424923-20425003 ( 49) GGTGGCCT 1 chrV:12870079-12870159 ( 67) CTCTGCCA 1 chrII:14063272-14063352 ( 10) TGCGTCCA 1 chrIII:11746884-11746964 ( 36) GATGGCCT 1 chrIII:13187917-13187997 ( 9) TTTGTCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKMGGCCR MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 7227 bayes= 6.73099 E= 4.5e-066 -1298 176 -130 -101 -106 -419 56 89 15 116 -1298 -38 -1298 -1298 202 -446 -1298 -1298 195 -215 -1298 214 -1298 -1298 -1298 214 -1298 -1298 67 -1298 83 -77 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKMGGCCR MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 81 E= 4.5e-066 0.000000 0.765432 0.098765 0.135802 0.123457 0.012346 0.358025 0.506173 0.283951 0.506173 0.000000 0.209877 0.000000 0.000000 0.987654 0.012346 0.000000 0.000000 0.938272 0.061728 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.407407 0.000000 0.432099 0.160494 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CKMGGCCR MEME-1 regular expression -------------------------------------------------------------------------------- C[TG][CAT]GGCC[GA] -------------------------------------------------------------------------------- Time 1.26 secs. ******************************************************************************** ******************************************************************************** MOTIF KASTMCWC MEME-2 width = 8 sites = 60 llr = 451 E-value = 1.3e-037 ******************************************************************************** -------------------------------------------------------------------------------- Motif KASTMCWC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a::4:5: pos.-specific C ::5:6a:a probability G 5:5:::1: matrix T 5::a1:4: bits 2.1 * 1.9 * * * * 1.7 * * * * 1.5 * * * * Relative 1.3 * * * * Entropy 1.1 * * * * (10.9 bits) 0.9 ****** * 0.6 ****** * 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GACTCCAC consensus T G A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KASTMCWC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:13468318-13468398 72 4.97e-05 TTTTGGCGTG TACTCCAC T chrIV:10483876-10483956 51 4.97e-05 ACGGTTTGTG GACTCCTC TCGGATAAAC chrV:16401685-16401765 54 4.97e-05 TCCGCGCTCG GACTCCTC TCGGAGGAGT chrV:2638683-2638763 50 4.97e-05 GCGCGCTGCG GACTCCTC TCAGACAACG chrIII:10064289-10064369 63 4.97e-05 GTGGCGCGTG TACTCCAC TCGGACAACA chrIII:8319276-8319356 29 9.10e-05 GGGAAAATGC TAGTCCAC GGCCATCACA chrII:2889357-2889437 58 9.10e-05 CGCGGCCACG GAGTCCTC TCGGAGAAGA chrIV:6321849-6321929 73 9.10e-05 TTCGGCCGTG TACTCCTC chrIV:192212-192292 45 9.10e-05 ACGCGCCGTG TACTCCTC TCGAAGGAAC chrIII:11946524-11946604 43 9.10e-05 CCACGCCGTG TACTCCTC CTGGACAATC chrV:10894785-10894865 43 9.10e-05 CTGGTCCGTG TACTCCTC TTGGACAACT chrV:10320351-10320431 29 9.10e-05 CTCGGCCATG TACTCCTC TCGGACAAAC chrIII:5722010-5722090 62 9.10e-05 ACCGGCTGTG TACTCCTC TCGGACGGGC chrII:4791416-4791496 72 9.10e-05 GCCGGCCGTG TACTCCTC T chrIII:5068983-5069063 36 9.10e-05 GCACAGTGTG TACTCCTC TCGGACTAAC chrV:18981147-18981227 58 9.10e-05 ACCGCCGGTG TACTCCTC TCCGACAACG chrIV:3803415-3803495 60 9.10e-05 CACGACCGTG TACTCCTC TCGGACAAGG chrII:9591243-9591323 52 9.10e-05 GCGCGTCGTG TACTCCTC TCAGACAAAC chrIII:11746884-11746964 61 9.10e-05 TCCGCAGGTG TACTCCTC TCGGAAAACG chrII:6776810-6776890 69 9.10e-05 TATGGACGCG TACTCCTC TCGG chrII:13117279-13117359 53 9.10e-05 ACGCGTCGCG TACTCCTC TCGGATAACG chrI:4247558-4247638 57 9.10e-05 CGCGGCCGCG TACTCCTC GAGGACAAAA chrII:10395530-10395610 48 1.06e-04 TTCGGCCGTG TAGTCCTC TCGGAGTTTT chrIV:8973710-8973790 40 1.06e-04 CGCGGCCGTG TAGTCCTC TTGGACCAGC chrII:15089583-15089663 44 1.06e-04 CGCGGCCGTG TAGTCCTC CTGGACAATG chrV:12870079-12870159 28 1.19e-04 CGTCCTGGAG GACTACAC GGCGGGATGG chrIV:11315035-11315115 21 1.19e-04 TGTTCACGAG GACTACAC GCAACATGGA chrIV:15526635-15526715 7 1.62e-04 CGAGAG GAGTACAC GGTTTGTCCG chrI:11374399-11374479 40 1.62e-04 TGTCCGAGTG GAGTACAC GCTGGCGTGG chrV:14055182-14055262 30 1.62e-04 TGTCCGTATG GAGTACAC GGCTGCGTGG chrII:4603180-4603260 39 1.62e-04 CTTCCAAGAG GAGTACAC ACGAGGTGGA chrI:3987226-3987306 19 1.62e-04 TGTCCGAGAG GAGTACAC GGTTTGTCCG chrIV:16415241-16415321 29 1.62e-04 TGTCCGAGAG GAGTACAC GGCAGCGTGG chrIV:7816550-7816630 25 1.62e-04 TGTCCGAGTG GAGTACAC CACCGTGTGG chrII:6913458-6913538 18 1.62e-04 TGTCCGAGAG GAGTACAC GACTGATGGC chrIII:12673532-12673612 19 1.62e-04 TGTCCTAGAG GAGTACAC GGCGTGGTGG chrIII:11290673-11290753 48 1.62e-04 TGTCCGAGAG GAGTACAC ACCGGGTGGC chrV:5917855-5917935 21 1.62e-04 TATCCTAGAG GAGTACAC GGTCGTGTGG chrII:6061660-6061740 17 1.62e-04 TGTCCGTGAG GAGTACAC GGCTGATGGC chrIII:8144736-8144816 31 1.62e-04 TGTCCGAGAG GAGTACAC ACAGCGCGGC chrV:15082454-15082534 29 1.62e-04 TGTCTAGGAG GAGTACAC GGTTGTCGGA chrIII:4912475-4912555 32 1.62e-04 TGTCCGAGAG GAGTACAC GACATTCGGA chrIII:13187917-13187997 58 1.62e-04 ACCACCCGTG TACTACAC GTGGACGATG chrIII:9868289-9868369 6 2.37e-04 GAGAG GACTCCGC CAGAATACGG chrII:4299388-4299468 43 2.61e-04 ACACGCTGCG TACTCCGC TCGGAGAAGG chrIII:10621378-10621458 40 2.61e-04 CGTTCGAGAG GAGTCCGC AGCGCATGGC chrIII:5349406-5349486 26 2.61e-04 TGTCCGAGAG GAGTCCGC GGGAGATGGA chrIV:6206536-6206616 18 2.75e-04 TGTCCGAGAG TAGTCCGC GAGGGTTGTA chrI:8511428-8511508 49 2.75e-04 AGTGGGATGT TAGTCCGC AACATTGGCG chrIII:7520798-7520878 22 3.90e-04 TGTCCGAGAG GAGTTCAC CACATGGGGA chrI:461686-461766 30 3.90e-04 TGTTCGAGAG GAGTTCAC AAGCGGGTGG chrV:13556803-13556883 33 3.90e-04 TCTCCGAGAG GAGTTCAC AGGCGGAGTT chrV:2127186-2127266 54 3.90e-04 CCCGGCCGTG TACTTCAC GTGAACAAGC chrIII:8307525-8307605 56 5.68e-04 ACGTTTTGTG TAATCCTC TCGGGAAATA chrV:10356089-10356169 9 6.69e-04 TCCGCGTG AAGTACAC AGACGGAAGC chrV:10526073-10526153 20 6.69e-04 TGTCCTGGTG AAGTACAC GGCGGATGGC chrI:13421157-13421237 5 6.69e-04 ACAA TACTTCGC TGTAAAATAT chrIII:12273775-12273855 48 7.51e-04 AGGGGTTTTG TAATACTC TCGGATAAGT chrII:14063272-14063352 39 8.07e-04 ATCCCGCACC GCCTCCTC GCAAGCGCGC chrIII:10856964-10857044 28 8.82e-04 TGTGCGTGGT GACTCCAA AACTTGAAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KASTMCWC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:13468318-13468398 5e-05 71_[+2]_1 chrIV:10483876-10483956 5e-05 50_[+2]_22 chrV:16401685-16401765 5e-05 53_[+2]_19 chrV:2638683-2638763 5e-05 49_[+2]_23 chrIII:10064289-10064369 5e-05 62_[+2]_10 chrIII:8319276-8319356 9.1e-05 28_[+2]_44 chrII:2889357-2889437 9.1e-05 57_[+2]_15 chrIV:6321849-6321929 9.1e-05 72_[+2] chrIV:192212-192292 9.1e-05 44_[+2]_28 chrIII:11946524-11946604 9.1e-05 42_[+2]_30 chrV:10894785-10894865 9.1e-05 42_[+2]_30 chrV:10320351-10320431 9.1e-05 28_[+2]_44 chrIII:5722010-5722090 9.1e-05 61_[+2]_11 chrII:4791416-4791496 9.1e-05 71_[+2]_1 chrIII:5068983-5069063 9.1e-05 35_[+2]_37 chrV:18981147-18981227 9.1e-05 57_[+2]_15 chrIV:3803415-3803495 9.1e-05 59_[+2]_13 chrII:9591243-9591323 9.1e-05 51_[+2]_21 chrIII:11746884-11746964 9.1e-05 60_[+2]_12 chrII:6776810-6776890 9.1e-05 68_[+2]_4 chrII:13117279-13117359 9.1e-05 52_[+2]_20 chrI:4247558-4247638 9.1e-05 56_[+2]_16 chrII:10395530-10395610 0.00011 47_[+2]_25 chrIV:8973710-8973790 0.00011 39_[+2]_33 chrII:15089583-15089663 0.00011 43_[+2]_29 chrV:12870079-12870159 0.00012 27_[+2]_45 chrIV:11315035-11315115 0.00012 20_[+2]_52 chrIV:15526635-15526715 0.00016 6_[+2]_66 chrI:11374399-11374479 0.00016 39_[+2]_33 chrV:14055182-14055262 0.00016 29_[+2]_43 chrII:4603180-4603260 0.00016 38_[+2]_34 chrI:3987226-3987306 0.00016 18_[+2]_54 chrIV:16415241-16415321 0.00016 28_[+2]_44 chrIV:7816550-7816630 0.00016 24_[+2]_48 chrII:6913458-6913538 0.00016 17_[+2]_55 chrIII:12673532-12673612 0.00016 18_[+2]_54 chrIII:11290673-11290753 0.00016 47_[+2]_25 chrV:5917855-5917935 0.00016 20_[+2]_52 chrII:6061660-6061740 0.00016 16_[+2]_56 chrIII:8144736-8144816 0.00016 30_[+2]_42 chrV:15082454-15082534 0.00016 28_[+2]_44 chrIII:4912475-4912555 0.00016 31_[+2]_41 chrIII:13187917-13187997 0.00016 57_[+2]_15 chrIII:9868289-9868369 0.00024 5_[+2]_67 chrII:4299388-4299468 0.00026 42_[+2]_30 chrIII:10621378-10621458 0.00026 39_[+2]_33 chrIII:5349406-5349486 0.00026 25_[+2]_47 chrIV:6206536-6206616 0.00027 17_[+2]_55 chrI:8511428-8511508 0.00027 48_[+2]_24 chrIII:7520798-7520878 0.00039 21_[+2]_51 chrI:461686-461766 0.00039 29_[+2]_43 chrV:13556803-13556883 0.00039 32_[+2]_40 chrV:2127186-2127266 0.00039 53_[+2]_19 chrIII:8307525-8307605 0.00057 55_[+2]_17 chrV:10356089-10356169 0.00067 8_[+2]_64 chrV:10526073-10526153 0.00067 19_[+2]_53 chrI:13421157-13421237 0.00067 4_[+2]_68 chrIII:12273775-12273855 0.00075 47_[+2]_25 chrII:14063272-14063352 0.00081 38_[+2]_34 chrIII:10856964-10857044 0.00088 27_[+2]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KASTMCWC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KASTMCWC width=8 seqs=60 chrV:13468318-13468398 ( 72) TACTCCAC 1 chrIV:10483876-10483956 ( 51) GACTCCTC 1 chrV:16401685-16401765 ( 54) GACTCCTC 1 chrV:2638683-2638763 ( 50) GACTCCTC 1 chrIII:10064289-10064369 ( 63) TACTCCAC 1 chrIII:8319276-8319356 ( 29) TAGTCCAC 1 chrII:2889357-2889437 ( 58) GAGTCCTC 1 chrIV:6321849-6321929 ( 73) TACTCCTC 1 chrIV:192212-192292 ( 45) TACTCCTC 1 chrIII:11946524-11946604 ( 43) TACTCCTC 1 chrV:10894785-10894865 ( 43) TACTCCTC 1 chrV:10320351-10320431 ( 29) TACTCCTC 1 chrIII:5722010-5722090 ( 62) TACTCCTC 1 chrII:4791416-4791496 ( 72) TACTCCTC 1 chrIII:5068983-5069063 ( 36) TACTCCTC 1 chrV:18981147-18981227 ( 58) TACTCCTC 1 chrIV:3803415-3803495 ( 60) TACTCCTC 1 chrII:9591243-9591323 ( 52) TACTCCTC 1 chrIII:11746884-11746964 ( 61) TACTCCTC 1 chrII:6776810-6776890 ( 69) TACTCCTC 1 chrII:13117279-13117359 ( 53) TACTCCTC 1 chrI:4247558-4247638 ( 57) TACTCCTC 1 chrII:10395530-10395610 ( 48) TAGTCCTC 1 chrIV:8973710-8973790 ( 40) TAGTCCTC 1 chrII:15089583-15089663 ( 44) TAGTCCTC 1 chrV:12870079-12870159 ( 28) GACTACAC 1 chrIV:11315035-11315115 ( 21) GACTACAC 1 chrIV:15526635-15526715 ( 7) GAGTACAC 1 chrI:11374399-11374479 ( 40) GAGTACAC 1 chrV:14055182-14055262 ( 30) GAGTACAC 1 chrII:4603180-4603260 ( 39) GAGTACAC 1 chrI:3987226-3987306 ( 19) GAGTACAC 1 chrIV:16415241-16415321 ( 29) GAGTACAC 1 chrIV:7816550-7816630 ( 25) GAGTACAC 1 chrII:6913458-6913538 ( 18) GAGTACAC 1 chrIII:12673532-12673612 ( 19) GAGTACAC 1 chrIII:11290673-11290753 ( 48) GAGTACAC 1 chrV:5917855-5917935 ( 21) GAGTACAC 1 chrII:6061660-6061740 ( 17) GAGTACAC 1 chrIII:8144736-8144816 ( 31) GAGTACAC 1 chrV:15082454-15082534 ( 29) GAGTACAC 1 chrIII:4912475-4912555 ( 32) GAGTACAC 1 chrIII:13187917-13187997 ( 58) TACTACAC 1 chrIII:9868289-9868369 ( 6) GACTCCGC 1 chrII:4299388-4299468 ( 43) TACTCCGC 1 chrIII:10621378-10621458 ( 40) GAGTCCGC 1 chrIII:5349406-5349486 ( 26) GAGTCCGC 1 chrIV:6206536-6206616 ( 18) TAGTCCGC 1 chrI:8511428-8511508 ( 49) TAGTCCGC 1 chrIII:7520798-7520878 ( 22) GAGTTCAC 1 chrI:461686-461766 ( 30) GAGTTCAC 1 chrV:13556803-13556883 ( 33) GAGTTCAC 1 chrV:2127186-2127266 ( 54) TACTTCAC 1 chrIII:8307525-8307605 ( 56) TAATCCTC 1 chrV:10356089-10356169 ( 9) AAGTACAC 1 chrV:10526073-10526153 ( 20) AAGTACAC 1 chrI:13421157-13421237 ( 5) TACTTCGC 1 chrIII:12273775-12273855 ( 48) TAATACTC 1 chrII:14063272-14063352 ( 39) GCCTCCTC 1 chrIII:10856964-10857044 ( 28) GACTCCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KASTMCWC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 7227 bayes= 6.82466 E= 1.3e-037 -294 -1255 99 82 194 -376 -1255 -1255 -294 109 99 -1255 -1255 -1255 -1255 187 45 132 -1255 -171 -1255 214 -1255 -1255 86 -1255 -106 61 -394 212 -1255 -1255 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KASTMCWC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 60 E= 1.3e-037 0.033333 0.000000 0.483333 0.483333 0.983333 0.016667 0.000000 0.000000 0.033333 0.483333 0.483333 0.000000 0.000000 0.000000 0.000000 1.000000 0.350000 0.566667 0.000000 0.083333 0.000000 1.000000 0.000000 0.000000 0.466667 0.000000 0.116667 0.416667 0.016667 0.983333 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KASTMCWC MEME-2 regular expression -------------------------------------------------------------------------------- [GT]A[CG]T[CA]C[AT]C -------------------------------------------------------------------------------- Time 2.19 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGCCKAG MEME-3 width = 8 sites = 49 llr = 368 E-value = 7.9e-022 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCCKAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::21:91 pos.-specific C :::79::: probability G 197::6:9 matrix T 9:3::4:1 bits 2.1 1.9 1.7 * * 1.5 * * * Relative 1.3 ** * ** Entropy 1.1 ** ***** (10.8 bits) 0.9 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGGCCGAG consensus TA T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCKAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:11374399-11374479 55 1.28e-05 CACGCTGGCG TGGCCGAG CACATCCTCG chrIII:12673532-12673612 34 1.28e-05 CACGGCGTGG TGGCCGAG ACCCCGACTC chrIII:10064289-10064369 28 1.28e-05 AAATCAAGCC TGGCCGAG GTGGCCGTGG chrIII:5308413-5308493 12 2.72e-05 TCACCAACAA TGGCCTAG AACCACCGGT chrIII:4930421-4930501 14 2.72e-05 AAAACAGTGT TGGCCTAG TAAATGCGTG chrIV:10483876-10483956 8 2.72e-05 GCAACAA TGGCCTAG GTTCCACAAG chrI:2097080-2097160 23 2.72e-05 CTCGAAATAC TGGCCTAG GATTCATGCG chrV:7084904-7084984 10 2.72e-05 CGCGCCGGC TGGCCTAG AAACCAACCT chrI:5164994-5165074 21 2.72e-05 GTTTGCACCA TGGCCTAG AAACACAATG chrV:2127186-2127266 11 2.72e-05 CTCCTGTGAA TGGCCTAG AAATTGTGGC chrIII:4912475-4912555 60 2.72e-05 TTCTCGGCCG TGGCCTAG AATATTAGTC chrIV:16415741-16415821 50 2.72e-05 CACGGCCGAG TGGCCTAG GAAACTCTTG chrIV:15526635-15526715 19 4.15e-05 GTACACGGTT TGTCCGAG AGGACTACAC chrIII:7520798-7520878 12 4.15e-05 TCGAATAAGT TGTCCGAG AGGAGTTCAC chrIV:6206536-6206616 8 4.15e-05 AATGCGT TGTCCGAG AGTAGTCCGC chrI:3987226-3987306 53 4.15e-05 GTACACGCTT TGTCCGAG AGGAGTACAC chrIV:16415241-16415321 19 4.15e-05 TTTATCCCAT TGTCCGAG AGGAGTACAC chrIV:7816550-7816630 15 4.15e-05 ATTGTTTTGT TGTCCGAG TGGAGTACAC chrII:6913458-6913538 8 4.15e-05 AATTTAT TGTCCGAG AGGAGTACAC chrIII:5871906-5871986 21 4.15e-05 agagaaACGT TGTCCGAG AGGAGTGCAC chrIII:5349406-5349486 16 4.15e-05 ACAAAAATGC TGTCCGAG AGGAGTCCGC chrIII:11290673-11290753 38 4.15e-05 GAAATATCCT TGTCCGAG AGGAGTACAC chrIII:8144736-8144816 21 4.15e-05 GTATTGGCTC TGTCCGAG AGGAGTACAC chrIII:12351475-12351555 43 5.60e-05 TTGCGCCGTG TGGACGAG AGAAACCTCG chrII:4603180-4603260 53 5.60e-05 ACACACGAGG TGGACGAG AAAACCCTCG chrV:5917855-5917935 36 5.60e-05 CACGGTCGTG TGGACGAG GAAGCAAATG chrIV:11315035-11315115 35 8.83e-05 ACACGCAACA TGGACTAG AATTTCGTGC chrII:3502802-3502882 4 1.16e-04 TCG GGGCCGAG TTGGAGTTTT chrV:10526073-10526153 34 1.75e-04 ACACGGCGGA TGGCCGAT AAAAAAGTTA chrII:10538082-10538162 51 1.75e-04 GAGGAGTACA TGGCCGAT AATTATTTCT chrI:461686-461766 45 2.59e-04 CACAAGCGGG TGGCCTAA CATCTCCGCG chrII:4791416-4791496 40 2.59e-04 CCGCGCACTG TGGCCTAA CATCCGACTC chrIII:3476306-3476386 56 2.75e-04 TTAAGGTGAG TGGCATAG TTTTTGTACT chrIII:11746884-11746964 24 3.14e-04 GCAAATGAGA GGGACGAG GTGCGATGGC chrII:4299388-4299468 19 3.90e-04 TACGGCGCGA TTGCCTAG AATCCGACAC chrII:6061660-6061740 31 4.42e-04 ACACGGCTGA TGGCCGGG AAGTTTTCTA chrV:13468318-13468398 17 5.32e-04 AGATTATGTT TTTCCGAG AGGGCTACAC chrIII:11946524-11946604 9 5.32e-04 CTGCGCGG GGGACTAG AAACCCACCT chrV:18981147-18981227 22 5.32e-04 AATGAGCCTG GGGACTAG TTCAGAGTTT chrI:4247558-4247638 24 5.32e-04 AACCAACATG TGACCTAG TTACTTCCTA chrIII:13187917-13187997 67 5.32e-04 GTACTACACG TGGACGAT GTGTCC chrV:12870079-12870159 43 5.98e-04 CACGGCGGGA TGGAAGAG AAAACGCGCG chrII:13117279-13117359 12 5.98e-04 CATGTTTTTT TGGAAGAG CGACTGCCCC chrIII:783424-783504 58 6.57e-04 TTCGTGGCCG AGGCCTAG GATTCCGGCC chrII:6776810-6776890 61 6.70e-04 TAGAAAATTA TGGACGCG TACTCCTCTC chrIII:9465582-9465662 27 7.15e-04 CGAATCTTTT TGTCCTCG TGTACTACGA chrII:4740157-4740237 16 7.83e-04 ACTTCGGCCA TGTGCGAG TTTCTAGGCC chrV:11029463-11029543 13 7.83e-04 ACACTAGTGG TGGACTAA CTATCCCATT chrV:13556803-13556883 23 8.42e-04 TTGTCTCTCT TCTCCGAG AGGAGTTCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCKAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:11374399-11374479 1.3e-05 54_[+3]_18 chrIII:12673532-12673612 1.3e-05 33_[+3]_39 chrIII:10064289-10064369 1.3e-05 27_[+3]_45 chrIII:5308413-5308493 2.7e-05 11_[+3]_61 chrIII:4930421-4930501 2.7e-05 13_[+3]_59 chrIV:10483876-10483956 2.7e-05 7_[+3]_65 chrI:2097080-2097160 2.7e-05 22_[+3]_50 chrV:7084904-7084984 2.7e-05 9_[+3]_63 chrI:5164994-5165074 2.7e-05 20_[+3]_52 chrV:2127186-2127266 2.7e-05 10_[+3]_62 chrIII:4912475-4912555 2.7e-05 59_[+3]_13 chrIV:16415741-16415821 2.7e-05 49_[+3]_23 chrIV:15526635-15526715 4.1e-05 18_[+3]_54 chrIII:7520798-7520878 4.1e-05 11_[+3]_61 chrIV:6206536-6206616 4.1e-05 7_[+3]_65 chrI:3987226-3987306 4.1e-05 52_[+3]_20 chrIV:16415241-16415321 4.1e-05 18_[+3]_54 chrIV:7816550-7816630 4.1e-05 14_[+3]_58 chrII:6913458-6913538 4.1e-05 7_[+3]_65 chrIII:5871906-5871986 4.1e-05 20_[+3]_52 chrIII:5349406-5349486 4.1e-05 15_[+3]_57 chrIII:11290673-11290753 4.1e-05 37_[+3]_35 chrIII:8144736-8144816 4.1e-05 20_[+3]_52 chrIII:12351475-12351555 5.6e-05 42_[+3]_30 chrII:4603180-4603260 5.6e-05 52_[+3]_20 chrV:5917855-5917935 5.6e-05 35_[+3]_37 chrIV:11315035-11315115 8.8e-05 34_[+3]_38 chrII:3502802-3502882 0.00012 3_[+3]_69 chrV:10526073-10526153 0.00017 33_[+3]_39 chrII:10538082-10538162 0.00017 50_[+3]_22 chrI:461686-461766 0.00026 44_[+3]_28 chrII:4791416-4791496 0.00026 39_[+3]_33 chrIII:3476306-3476386 0.00028 55_[+3]_17 chrIII:11746884-11746964 0.00031 23_[+3]_49 chrII:4299388-4299468 0.00039 18_[+3]_54 chrII:6061660-6061740 0.00044 30_[+3]_42 chrV:13468318-13468398 0.00053 16_[+3]_56 chrIII:11946524-11946604 0.00053 8_[+3]_64 chrV:18981147-18981227 0.00053 21_[+3]_51 chrI:4247558-4247638 0.00053 23_[+3]_49 chrIII:13187917-13187997 0.00053 66_[+3]_6 chrV:12870079-12870159 0.0006 42_[+3]_30 chrII:13117279-13117359 0.0006 11_[+3]_61 chrIII:783424-783504 0.00066 57_[+3]_15 chrII:6776810-6776890 0.00067 60_[+3]_12 chrIII:9465582-9465662 0.00071 26_[+3]_46 chrII:4740157-4740237 0.00078 15_[+3]_57 chrV:11029463-11029543 0.00078 12_[+3]_60 chrV:13556803-13556883 0.00084 22_[+3]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCKAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCCKAG width=8 seqs=49 chrI:11374399-11374479 ( 55) TGGCCGAG 1 chrIII:12673532-12673612 ( 34) TGGCCGAG 1 chrIII:10064289-10064369 ( 28) TGGCCGAG 1 chrIII:5308413-5308493 ( 12) TGGCCTAG 1 chrIII:4930421-4930501 ( 14) TGGCCTAG 1 chrIV:10483876-10483956 ( 8) TGGCCTAG 1 chrI:2097080-2097160 ( 23) TGGCCTAG 1 chrV:7084904-7084984 ( 10) TGGCCTAG 1 chrI:5164994-5165074 ( 21) TGGCCTAG 1 chrV:2127186-2127266 ( 11) TGGCCTAG 1 chrIII:4912475-4912555 ( 60) TGGCCTAG 1 chrIV:16415741-16415821 ( 50) TGGCCTAG 1 chrIV:15526635-15526715 ( 19) TGTCCGAG 1 chrIII:7520798-7520878 ( 12) TGTCCGAG 1 chrIV:6206536-6206616 ( 8) TGTCCGAG 1 chrI:3987226-3987306 ( 53) TGTCCGAG 1 chrIV:16415241-16415321 ( 19) TGTCCGAG 1 chrIV:7816550-7816630 ( 15) TGTCCGAG 1 chrII:6913458-6913538 ( 8) TGTCCGAG 1 chrIII:5871906-5871986 ( 21) TGTCCGAG 1 chrIII:5349406-5349486 ( 16) TGTCCGAG 1 chrIII:11290673-11290753 ( 38) TGTCCGAG 1 chrIII:8144736-8144816 ( 21) TGTCCGAG 1 chrIII:12351475-12351555 ( 43) TGGACGAG 1 chrII:4603180-4603260 ( 53) TGGACGAG 1 chrV:5917855-5917935 ( 36) TGGACGAG 1 chrIV:11315035-11315115 ( 35) TGGACTAG 1 chrII:3502802-3502882 ( 4) GGGCCGAG 1 chrV:10526073-10526153 ( 34) TGGCCGAT 1 chrII:10538082-10538162 ( 51) TGGCCGAT 1 chrI:461686-461766 ( 45) TGGCCTAA 1 chrII:4791416-4791496 ( 40) TGGCCTAA 1 chrIII:3476306-3476386 ( 56) TGGCATAG 1 chrIII:11746884-11746964 ( 24) GGGACGAG 1 chrII:4299388-4299468 ( 19) TTGCCTAG 1 chrII:6061660-6061740 ( 31) TGGCCGGG 1 chrV:13468318-13468398 ( 17) TTTCCGAG 1 chrIII:11946524-11946604 ( 9) GGGACTAG 1 chrV:18981147-18981227 ( 22) GGGACTAG 1 chrI:4247558-4247638 ( 24) TGACCTAG 1 chrIII:13187917-13187997 ( 67) TGGACGAT 1 chrV:12870079-12870159 ( 43) TGGAAGAG 1 chrII:13117279-13117359 ( 12) TGGAAGAG 1 chrIII:783424-783504 ( 58) AGGCCTAG 1 chrII:6776810-6776890 ( 61) TGGACGCG 1 chrIII:9465582-9465662 ( 27) TGTCCTCG 1 chrII:4740157-4740237 ( 16) TGTGCGAG 1 chrV:11029463-11029543 ( 13) TGGACTAA 1 chrV:13556803-13556883 ( 23) TCTCCGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCKAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 7227 bayes= 7.66642 E= 7.9e-022 -365 -1226 -158 172 -1226 -347 195 -274 -365 -1226 147 16 -7 170 -357 -1226 -207 205 -1226 -1226 -1226 -1226 128 58 187 -247 -357 -1226 -207 -1226 185 -216 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCKAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 49 E= 7.9e-022 0.020408 0.000000 0.081633 0.897959 0.000000 0.020408 0.938776 0.040816 0.020408 0.000000 0.673469 0.306122 0.244898 0.734694 0.020408 0.000000 0.061224 0.938776 0.000000 0.000000 0.000000 0.000000 0.591837 0.408163 0.938776 0.040816 0.020408 0.000000 0.061224 0.000000 0.877551 0.061224 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCCKAG MEME-3 regular expression -------------------------------------------------------------------------------- TG[GT][CA]C[GT]AG -------------------------------------------------------------------------------- Time 3.06 secs. ******************************************************************************** ******************************************************************************** MOTIF WWTTCAAA MEME-4 width = 8 sites = 19 llr = 160 E-value = 1.5e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif WWTTCAAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 55:::8aa pos.-specific C ::::a::: probability G 11:::2:: matrix T 44aa:::: bits 2.1 * 1.9 *** ** 1.7 *** ** 1.5 *** ** Relative 1.3 ****** Entropy 1.1 ****** (12.2 bits) 0.9 ****** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AATTCAAA consensus TT G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWTTCAAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:15526635-15526715 70 1.90e-05 AAACGCGCGA AATTCAAA TTA chrV:11029463-11029543 68 1.90e-05 TTACGCGGGA AATTCAAA TTCAA chrIII:7199051-7199131 13 1.90e-05 TGTTGGCGGT AATTCAAA AATAATATTT chrV:7084904-7084984 65 1.90e-05 AAAGGGCGGC AATTCAAA AAAGAATA chrIII:5722010-5722090 10 1.90e-05 CTTCAATCG AATTCAAA ATGTATTGAT chrI:5164994-5165074 67 1.90e-05 CAACGCGGTA AATTCAAA CAGAGA chrIV:9074374-9074454 11 3.91e-05 CAAAATCTTT TATTCAAA CTTCCGCCTT chrV:16022738-16022818 36 3.91e-05 CGAAAACTCA TATTCAAA ACTCGCGCCG chrIII:8319276-8319356 58 8.07e-05 TTCTAGGCCA TTTTCAAA GAAAACGGAG chrI:2097080-2097160 68 8.07e-05 TGCACCGATT TTTTCAAA ATTAA chrIII:9868289-9868369 65 8.07e-05 AAAGCGCGGT TTTTCAAA TAAGAAAA chrI:11374399-11374479 1 9.87e-05 . AATTCGAA TTAAATTAAT chrV:20424923-20425003 12 1.36e-04 AAACTTTTTC GATTCAAA TTTTCCCATT chrIV:7816550-7816630 64 1.54e-04 CTTGCGCGGA AGTTCAAA TTTTAATTA chrI:14756507-14756587 42 1.73e-04 GCTGCGGAAA ATTTCGAA CAAAGCCTCA chrI:8511428-8511508 69 1.92e-04 CATTGGCGGG TGTTCAAA TAGT chrII:14795118-14795198 3 2.32e-04 GA GTTTCAAA ATTATCTCTA chrIII:11290673-11290753 23 2.32e-04 AAACCCTCAT TTTTCGAA ATATCCTTGT chrIII:9465582-9465662 13 2.32e-04 CGATAAAATA TTTTCGAA TCTTTTTGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWTTCAAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:15526635-15526715 1.9e-05 69_[+4]_3 chrV:11029463-11029543 1.9e-05 67_[+4]_5 chrIII:7199051-7199131 1.9e-05 12_[+4]_60 chrV:7084904-7084984 1.9e-05 64_[+4]_8 chrIII:5722010-5722090 1.9e-05 9_[+4]_63 chrI:5164994-5165074 1.9e-05 66_[+4]_6 chrIV:9074374-9074454 3.9e-05 10_[+4]_62 chrV:16022738-16022818 3.9e-05 35_[+4]_37 chrIII:8319276-8319356 8.1e-05 57_[+4]_15 chrI:2097080-2097160 8.1e-05 67_[+4]_5 chrIII:9868289-9868369 8.1e-05 64_[+4]_8 chrI:11374399-11374479 9.9e-05 [+4]_72 chrV:20424923-20425003 0.00014 11_[+4]_61 chrIV:7816550-7816630 0.00015 63_[+4]_9 chrI:14756507-14756587 0.00017 41_[+4]_31 chrI:8511428-8511508 0.00019 68_[+4]_4 chrII:14795118-14795198 0.00023 2_[+4]_70 chrIII:11290673-11290753 0.00023 22_[+4]_50 chrIII:9465582-9465662 0.00023 12_[+4]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWTTCAAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WWTTCAAA width=8 seqs=19 chrIV:15526635-15526715 ( 70) AATTCAAA 1 chrV:11029463-11029543 ( 68) AATTCAAA 1 chrIII:7199051-7199131 ( 13) AATTCAAA 1 chrV:7084904-7084984 ( 65) AATTCAAA 1 chrIII:5722010-5722090 ( 10) AATTCAAA 1 chrI:5164994-5165074 ( 67) AATTCAAA 1 chrIV:9074374-9074454 ( 11) TATTCAAA 1 chrV:16022738-16022818 ( 36) TATTCAAA 1 chrIII:8319276-8319356 ( 58) TTTTCAAA 1 chrI:2097080-2097160 ( 68) TTTTCAAA 1 chrIII:9868289-9868369 ( 65) TTTTCAAA 1 chrI:11374399-11374479 ( 1) AATTCGAA 1 chrV:20424923-20425003 ( 12) GATTCAAA 1 chrIV:7816550-7816630 ( 64) AGTTCAAA 1 chrI:14756507-14756587 ( 42) ATTTCGAA 1 chrI:8511428-8511508 ( 69) TGTTCAAA 1 chrII:14795118-14795198 ( 3) GTTTCAAA 1 chrIII:11290673-11290753 ( 23) TTTTCGAA 1 chrIII:9465582-9465662 ( 13) TTTTCGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWTTCAAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 7227 bayes= 9.46665 E= 1.5e+000 88 -1089 -121 62 104 -1089 -121 43 -1089 -1089 -1089 187 -1089 -1089 -1089 187 -1089 214 -1089 -1089 162 -1089 -21 -1089 196 -1089 -1089 -1089 196 -1089 -1089 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWTTCAAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 1.5e+000 0.473684 0.000000 0.105263 0.421053 0.526316 0.000000 0.105263 0.368421 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.789474 0.000000 0.210526 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WWTTCAAA MEME-4 regular expression -------------------------------------------------------------------------------- [AT][AT]TTC[AG]AA -------------------------------------------------------------------------------- Time 3.93 secs. ******************************************************************************** ******************************************************************************** MOTIF TCGGAMAA MEME-5 width = 8 sites = 22 llr = 174 E-value = 3.3e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCGGAMAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::11a3aa pos.-specific C :91::4:: probability G 1:89:1:: matrix T 91:::2:: bits 2.1 1.9 * ** 1.7 * ** 1.5 * ** ** Relative 1.3 ** ** ** Entropy 1.1 ***** ** (11.4 bits) 0.9 ***** ** 0.6 ***** ** 0.4 ***** ** 0.2 ******** 0.0 -------- Multilevel TCGGACAA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGAMAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:10320351-10320431 37 1.42e-05 TGTACTCCTC TCGGACAA ACATTTTAGA chrIV:3803415-3803495 68 1.42e-05 TGTACTCCTC TCGGACAA GGGAT chrIII:10064289-10064369 71 1.42e-05 TGTACTCCAC TCGGACAA CA chrIII:11746884-11746964 69 3.03e-05 TGTACTCCTC TCGGAAAA CGGT chrIV:10483876-10483956 59 4.74e-05 TGGACTCCTC TCGGATAA ACAGTTACTC chrIII:12273775-12273855 56 4.74e-05 TGTAATACTC TCGGATAA GTTGGAATTC chrII:13117279-13117359 61 4.74e-05 CGTACTCCTC TCGGATAA CGATTTTATG chrII:4299388-4299468 51 6.27e-05 CGTACTCCGC TCGGAGAA GGTCTCGCAG chrII:2889357-2889437 66 6.27e-05 CGGAGTCCTC TCGGAGAA GAGGTGA chrIII:11946524-11946604 59 7.77e-05 TCCTGGACAA TCGAACAA AATTATTTTT chrIV:15526635-15526715 46 1.08e-04 CGGCCGAGAT TCCGACAA AGCTGAAAAC chrV:10894785-10894865 51 1.08e-04 TGTACTCCTC TTGGACAA CTTAATCTTG chrV:18981147-18981227 66 1.08e-04 TGTACTCCTC TCCGACAA CGGGTTT chrV:2638683-2638763 58 1.36e-04 CGGACTCCTC TCAGACAA CGTTTTATTA chrII:9591243-9591323 60 1.36e-04 TGTACTCCTC TCAGACAA ACAGAAGTTG chrIV:16415741-16415821 1 1.53e-04 . TCGAAAAA AATTATTTTT chrIII:11290673-11290753 7 1.87e-04 TTTTAT TTGGAAAA ACCCTCATTT chrII:4791416-4791496 7 2.18e-04 AATTTC GCGGAAAA TCCTATTTTG chrIII:5349406-5349486 69 2.18e-04 GGCCACCGAT GCGGAAAA CTGG chrIII:7520798-7520878 2 2.48e-04 T TCGAATAA GTTGTCCGAG chrIV:796698-796778 5 3.67e-04 AAAA TTGGAGAA TGCAAGTCTA chrIII:9868289-9868369 50 4.10e-04 TCCGCGGCCA CCGGAAAA GCGCGGTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGAMAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:10320351-10320431 1.4e-05 36_[+5]_36 chrIV:3803415-3803495 1.4e-05 67_[+5]_5 chrIII:10064289-10064369 1.4e-05 70_[+5]_2 chrIII:11746884-11746964 3e-05 68_[+5]_4 chrIV:10483876-10483956 4.7e-05 58_[+5]_14 chrIII:12273775-12273855 4.7e-05 55_[+5]_17 chrII:13117279-13117359 4.7e-05 60_[+5]_12 chrII:4299388-4299468 6.3e-05 50_[+5]_22 chrII:2889357-2889437 6.3e-05 65_[+5]_7 chrIII:11946524-11946604 7.8e-05 58_[+5]_14 chrIV:15526635-15526715 0.00011 45_[+5]_27 chrV:10894785-10894865 0.00011 50_[+5]_22 chrV:18981147-18981227 0.00011 65_[+5]_7 chrV:2638683-2638763 0.00014 57_[+5]_15 chrII:9591243-9591323 0.00014 59_[+5]_13 chrIV:16415741-16415821 0.00015 [+5]_72 chrIII:11290673-11290753 0.00019 6_[+5]_66 chrII:4791416-4791496 0.00022 6_[+5]_66 chrIII:5349406-5349486 0.00022 68_[+5]_4 chrIII:7520798-7520878 0.00025 1_[+5]_71 chrIV:796698-796778 0.00037 4_[+5]_68 chrIII:9868289-9868369 0.00041 49_[+5]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGAMAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCGGAMAA width=8 seqs=22 chrV:10320351-10320431 ( 37) TCGGACAA 1 chrIV:3803415-3803495 ( 68) TCGGACAA 1 chrIII:10064289-10064369 ( 71) TCGGACAA 1 chrIII:11746884-11746964 ( 69) TCGGAAAA 1 chrIV:10483876-10483956 ( 59) TCGGATAA 1 chrIII:12273775-12273855 ( 56) TCGGATAA 1 chrII:13117279-13117359 ( 61) TCGGATAA 1 chrII:4299388-4299468 ( 51) TCGGAGAA 1 chrII:2889357-2889437 ( 66) TCGGAGAA 1 chrIII:11946524-11946604 ( 59) TCGAACAA 1 chrIV:15526635-15526715 ( 46) TCCGACAA 1 chrV:10894785-10894865 ( 51) TTGGACAA 1 chrV:18981147-18981227 ( 66) TCCGACAA 1 chrV:2638683-2638763 ( 58) TCAGACAA 1 chrII:9591243-9591323 ( 60) TCAGACAA 1 chrIV:16415741-16415821 ( 1) TCGAAAAA 1 chrIII:11290673-11290753 ( 7) TTGGAAAA 1 chrII:4791416-4791496 ( 7) GCGGAAAA 1 chrIII:5349406-5349486 ( 69) GCGGAAAA 1 chrIII:7520798-7520878 ( 2) TCGAATAA 1 chrIV:796698-796778 ( 5) TTGGAGAA 1 chrIII:9868289-9868369 ( 50) CCGGAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGAMAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 7227 bayes= 8.71141 E= 3.3e+001 -1110 -231 -142 166 -1110 193 -1110 -100 -150 -132 175 -1110 -91 -1110 183 -1110 196 -1110 -1110 -1110 9 85 -84 -59 196 -1110 -1110 -1110 196 -1110 -1110 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGAMAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 3.3e+001 0.000000 0.045455 0.090909 0.863636 0.000000 0.863636 0.000000 0.136364 0.090909 0.090909 0.818182 0.000000 0.136364 0.000000 0.863636 0.000000 1.000000 0.000000 0.000000 0.000000 0.272727 0.409091 0.136364 0.181818 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCGGAMAA MEME-5 regular expression -------------------------------------------------------------------------------- TCGGA[CA]AA -------------------------------------------------------------------------------- Time 6.52 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:13187917-13187997 2.07e-02 80 chrIV:16415741-16415821 2.15e-05 24_[+3(4.15e-05)]_17_[+3(2.72e-05)]_\ 23 chrIII:4912475-4912555 2.94e-05 21_[+3(4.15e-05)]_22_[+1(1.05e-05)]_\ [+3(2.72e-05)]_13 chrV:265394-265474 7.57e-01 80 chrI:933477-933557 9.71e-01 80 chrV:2127186-2127266 2.97e-04 10_[+3(2.72e-05)]_62 chrI:4247558-4247638 4.30e-04 38_[+1(6.54e-05)]_[+1(3.10e-05)]_2_\ [+2(9.10e-05)]_16 chrII:13117279-13117359 1.11e-05 35_[+1(6.54e-05)]_9_[+2(9.10e-05)]_\ [+5(4.74e-05)]_12 chrIII:12273775-12273855 8.88e-05 30_[+1(6.54e-05)]_17_[+5(4.74e-05)]_\ 17 chrIII:3476306-3476386 1.11e-01 80 chrII:6776810-6776890 1.31e-03 68_[+2(9.10e-05)]_4 chrIII:10064289-10064369 6.86e-07 27_[+3(1.28e-05)]_7_[+3(2.72e-05)]_\ 12_[+2(4.97e-05)]_[+5(1.42e-05)]_2 chrIV:11315035-11315115 7.13e-04 34_[+3(8.83e-05)]_38 chrIV:16995578-16995658 2.21e-01 80 chrII:15089583-15089663 4.58e-04 25_[+1(6.54e-05)]_[+1(3.10e-05)]_39 chrV:15082454-15082534 7.81e-03 48_[+1(5.29e-05)]_24 chrI:13421157-13421237 1.59e-01 80 chrIV:8973710-8973790 1.28e-03 29_[+1(3.10e-05)]_43 chrIII:8144736-8144816 4.88e-05 20_[+3(4.15e-05)]_43_[+1(6.54e-05)]_\ 1 chrIII:9465582-9465662 1.13e-04 50_[+3(2.72e-05)]_22 chrII:10538082-10538162 4.26e-04 66_[+1(1.05e-05)]_6 chrII:6061660-6061740 1.11e-02 80 chrIII:11746884-11746964 1.74e-04 60_[+2(9.10e-05)]_[+5(3.03e-05)]_4 chrII:9591243-9591323 4.11e-04 51_[+2(9.10e-05)]_21 chrIV:3803415-3803495 2.22e-04 59_[+2(9.10e-05)]_[+5(1.42e-05)]_5 chrV:5917855-5917935 1.72e-03 35_[+3(5.60e-05)]_37 chrI:5164994-5165074 6.10e-05 20_[+3(2.72e-05)]_38_[+4(1.90e-05)]_\ 6 chrIII:9868289-9868369 1.84e-05 41_[+1(4.09e-05)]_15_[+4(8.07e-05)]_\ 8 chrV:18981147-18981227 1.59e-05 40_[+1(6.54e-05)]_9_[+2(9.10e-05)]_\ 15 chrIII:11290673-11290753 1.75e-06 37_[+3(4.15e-05)]_16_[+3(1.28e-05)]_\ 11 chrV:16022738-16022818 4.22e-04 35_[+4(3.91e-05)]_37 chrV:13313183-13313263 9.67e-02 65_[+1(5.29e-05)]_7 chrIII:5068983-5069063 7.54e-04 35_[+2(9.10e-05)]_37 chrIII:5349406-5349486 2.86e-05 15_[+3(4.15e-05)]_32_[+1(6.54e-05)]_\ 17 chrIII:5871906-5871986 2.57e-04 20_[+3(4.15e-05)]_52 chrII:4791416-4791496 4.07e-06 54_[+1(1.05e-05)]_9_[+2(9.10e-05)]_\ 1 chrIII:5722010-5722090 1.30e-04 9_[+4(1.90e-05)]_27_[+1(6.54e-05)]_\ 9_[+2(9.10e-05)]_11 chrIII:12673532-12673612 6.22e-05 8_[+3(7.20e-05)]_17_[+3(1.28e-05)]_\ 7_[+1(2.16e-05)]_24 chrV:7084904-7084984 1.13e-06 9_[+3(2.72e-05)]_8_[+1(1.05e-05)]_\ 31_[+4(1.90e-05)]_8 chrII:6913458-6913538 1.65e-04 7_[+3(4.15e-05)]_31_[+1(5.29e-05)]_\ 26 chrIII:11091796-11091876 2.75e-01 80 chrV:2638683-2638763 1.05e-05 24_[+1(3.10e-05)]_17_[+2(4.97e-05)]_\ 23 chrV:16401685-16401765 1.13e-04 28_[+1(3.10e-05)]_17_[+2(4.97e-05)]_\ 19 chrII:10395530-10395610 1.39e-02 80 chrV:10526073-10526153 2.14e-03 80 chrIII:7199051-7199131 6.75e-03 12_[+4(1.90e-05)]_60 chrIII:8307525-8307605 6.84e-03 16_[+1(3.10e-05)]_56 chrV:11029463-11029543 1.21e-03 67_[+4(1.90e-05)]_5 chrV:20424923-20425003 6.05e-04 50_[+3(2.72e-05)]_22 chrI:2097080-2097160 3.72e-04 2_[+3(2.72e-05)]_12_[+3(2.72e-05)]_\ 37_[+4(8.07e-05)]_5 chrIV:7816550-7816630 8.04e-05 14_[+3(4.15e-05)]_17_[+3(2.72e-05)]_\ 33 chrIV:9074374-9074454 9.09e-03 10_[+4(3.91e-05)]_62 chrIII:10621378-10621458 2.07e-04 53_[+3(2.72e-05)]_19 chrIV:10483876-10483956 5.81e-07 7_[+3(2.72e-05)]_18_[+1(2.16e-05)]_\ 9_[+2(4.97e-05)]_[+5(4.74e-05)]_14 chrIII:931567-931647 9.59e-01 80 chrV:10356089-10356169 8.47e-03 48_[+1(6.54e-05)]_24 chrV:10320351-10320431 2.08e-05 18_[+1(2.16e-05)]_2_[+2(9.10e-05)]_\ [+5(1.42e-05)]_36 chrI:14756507-14756587 1.67e-02 44_[+5(7.77e-05)]_28 chrIV:16415241-16415321 8.09e-05 18_[+3(4.15e-05)]_17_[+3(2.72e-05)]_\ 29 chrI:3987226-3987306 1.42e-04 8_[+3(4.15e-05)]_14_[+3(4.15e-05)]_\ 14_[+3(4.15e-05)]_20 chrII:4603180-4603260 1.02e-04 52_[+3(5.60e-05)]_8_[+1(3.10e-05)]_\ 4 chrIII:10856964-10857044 2.53e-01 80 chrI:8511428-8511508 4.75e-04 28_[+1(6.54e-05)]_44 chrIV:6206536-6206616 1.70e-04 7_[+3(4.15e-05)]_23_[+1(6.54e-05)]_\ 11_[+1(2.16e-05)]_15 chrIV:6631939-6632019 9.32e-03 80 chrIII:4905485-4905565 2.63e-02 7_[+1(2.16e-05)]_65 chrV:10894785-10894865 1.86e-04 42_[+2(9.10e-05)]_30 chrIII:11946524-11946604 1.18e-03 42_[+2(9.10e-05)]_8_[+5(7.77e-05)]_\ 14 chrIV:192212-192292 1.54e-03 7_[+1(3.10e-05)]_12_[+1(2.16e-05)]_\ 9_[+2(9.10e-05)]_28 chrV:12870079-12870159 1.77e-02 80 chrX:15849553-15849633 8.76e-01 80 chrV:13468318-13468398 5.54e-04 53_[+1(6.54e-05)]_10_[+2(4.97e-05)]_\ 1 chrV:13556803-13556883 8.48e-04 52_[+1(6.54e-05)]_20 chrIII:8850781-8850861 2.15e-01 80 chrIV:6321849-6321929 2.55e-03 45_[+1(6.54e-05)]_19_[+2(9.10e-05)] chrI:461686-461766 5.31e-04 58_[+1(3.10e-05)]_14 chrIV:5364320-5364400 6.72e-01 80 chrV:14055182-14055262 1.60e-03 80 chrII:9940598-9940678 1.88e-01 80 chrIV:796698-796778 5.36e-02 80 chrIII:4930421-4930501 1.17e-03 13_[+3(2.72e-05)]_33_[+1(4.09e-05)]_\ 18 chrIII:5308413-5308493 1.03e-02 11_[+3(2.72e-05)]_23_[+3(1.28e-05)]_\ 30 chrII:14795118-14795198 5.26e-03 80 chrIII:11317293-11317373 5.92e-01 80 chrIII:12351475-12351555 3.23e-03 42_[+3(5.60e-05)]_12_[+1(4.09e-05)]_\ 10 chrI:11374399-11374479 3.80e-07 [+4(9.87e-05)]_21_[+3(4.15e-05)]_17_\ [+3(1.28e-05)]_6_[+1(1.05e-05)]_4 chrI:8615202-8615282 3.35e-02 46_[+1(6.54e-05)]_26 chrII:2889357-2889437 1.90e-04 47_[+1(4.09e-05)]_2_[+2(9.10e-05)]_\ [+5(6.27e-05)]_7 chrIII:7520798-7520878 3.60e-05 11_[+3(4.15e-05)]_39_[+1(6.54e-05)]_\ 14 chrII:4740157-4740237 1.19e-02 26_[+1(6.54e-05)]_46 chrIII:8319276-8319356 6.65e-05 28_[+2(9.10e-05)]_13_[+1(6.54e-05)]_\ [+4(8.07e-05)]_15 chrIV:410677-410757 4.55e-01 80 chrII:4299388-4299468 1.28e-03 50_[+5(6.27e-05)]_22 chrV:15085601-15085681 8.33e-01 80 chrIII:11119505-11119585 8.10e-01 80 chrII:14063272-14063352 3.94e-01 80 chrIII:783424-783504 5.06e-04 51_[+3(1.28e-05)]_21 chrII:3502802-3502882 1.97e-03 21_[+1(6.54e-05)]_51 chrIV:15526635-15526715 7.74e-08 18_[+3(4.15e-05)]_43_[+4(1.90e-05)]_\ 3 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************