******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/K12H6.12.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:4092677-4092757 1.0000 80 chrII:4094432-4094512 1.0000 80 chrI:9322551-9322631 1.0000 80 chrX:10656775-10656855 1.0000 80 chrV:14948744-14948824 1.0000 80 chrII:4094635-4094715 1.0000 80 chrIV:12584279-12584359 1.0000 80 chrIV:11744387-11744467 1.0000 80 chrV:10722120-10722200 1.0000 80 chrIII:10151890-10151970 1.0000 80 chrII:7325308-7325388 1.0000 80 chrV:19001135-19001215 1.0000 80 chrIV:5586456-5586536 1.0000 80 chrI:12966551-12966631 1.0000 80 chrX:13147319-13147399 1.0000 80 chrIII:3984199-3984279 1.0000 80 chrII:9281803-9281883 1.0000 80 chrIV:12365102-12365182 1.0000 80 chrX:15342327-15342407 1.0000 80 chrIII:9702833-9702913 1.0000 80 chrIII:3898945-3899025 1.0000 80 chrV:18490595-18490675 1.0000 80 chrV:20793939-20794019 1.0000 80 chrIII:4658491-4658571 1.0000 80 chrX:5983033-5983113 1.0000 80 chrX:8952146-8952226 1.0000 80 chrV:6342621-6342701 1.0000 80 chrX:4899774-4899854 1.0000 80 chrX:16129038-16129118 1.0000 80 chrI:8312646-8312726 1.0000 80 chrX:4137930-4138010 1.0000 80 chrX:12186221-12186301 1.0000 80 chrI:8013465-8013545 1.0000 80 chrIII:5755363-5755443 1.0000 80 chrIII:4379186-4379266 1.0000 80 chrX:7217856-7217936 1.0000 80 chrX:2321949-2322029 1.0000 80 chrI:12548100-12548180 1.0000 80 chrX:9668693-9668773 1.0000 80 chrIII:3864223-3864303 1.0000 80 chrX:8017428-8017508 1.0000 80 chrIII:7724586-7724666 1.0000 80 chrI:9598354-9598434 1.0000 80 chrX:8806521-8806601 1.0000 80 chrX:7218060-7218140 1.0000 80 chrI:3627108-3627188 1.0000 80 chrI:9092466-9092546 1.0000 80 chrX:13739544-13739624 1.0000 80 chrII:7319698-7319778 1.0000 80 chrII:9606784-9606864 1.0000 80 chrX:5140299-5140379 1.0000 80 chrI:6398198-6398278 1.0000 80 chrII:13196867-13196947 1.0000 80 chrIV:7391625-7391705 1.0000 80 chrIV:16658835-16658915 1.0000 80 chrX:8257833-8257913 1.0000 80 chrIV:13118992-13119072 1.0000 80 chrIII:10367567-10367647 1.0000 80 chrII:15044000-15044080 1.0000 80 chrIII:13724591-13724671 1.0000 80 chrI:10765678-10765758 1.0000 80 chrX:17519656-17519736 1.0000 80 chrII:8744649-8744729 1.0000 80 chrV:10246501-10246581 1.0000 80 chrV:12819274-12819354 1.0000 80 chrIII:11185680-11185760 1.0000 80 chrIV:3135126-3135206 1.0000 80 chrX:5201981-5202061 1.0000 80 chrV:6030568-6030648 1.0000 80 chrV:6350309-6350389 1.0000 80 chrIV:7149345-7149425 1.0000 80 chrX:7284922-7285002 1.0000 80 chrII:4456140-4456220 1.0000 80 chrV:6341329-6341409 1.0000 80 chrIV:5598803-5598883 1.0000 80 chrIV:5588484-5588564 1.0000 80 chrIV:14618679-14618759 1.0000 80 chrV:7804287-7804367 1.0000 80 chrX:11469793-11469873 1.0000 80 chrIII:5950034-5950114 1.0000 80 chrIII:6140088-6140168 1.0000 80 chrIII:8287747-8287827 1.0000 80 chrI:12549925-12550005 1.0000 80 chrIV:12583363-12583443 1.0000 80 chrV:10041559-10041639 1.0000 80 chrI:5140419-5140499 1.0000 80 chrV:1943642-1943722 1.0000 80 chrII:8796584-8796664 1.0000 80 chrII:9013442-9013522 1.0000 80 chrIII:2535381-2535461 1.0000 80 chrV:14368491-14368571 1.0000 80 chrX:5653913-5653993 1.0000 80 chrI:4917720-4917800 1.0000 80 chrII:8131499-8131579 1.0000 80 chrX:8160232-8160312 1.0000 80 chrX:10654723-10654803 1.0000 80 chrV:20417938-20418018 1.0000 80 chrX:13768659-13768739 1.0000 80 chrIV:5582392-5582472 1.0000 80 chrX:6571236-6571316 1.0000 80 chrI:10858101-10858181 1.0000 80 chrIII:11834322-11834402 1.0000 80 chrV:10719259-10719339 1.0000 80 chrIV:10819042-10819122 1.0000 80 chrII:7836706-7836786 1.0000 80 chrI:2069310-2069390 1.0000 80 chrV:10862014-10862094 1.0000 80 chrV:5963838-5963918 1.0000 80 chrIV:2990675-2990755 1.0000 80 chrIV:14260911-14260991 1.0000 80 chrV:6043963-6044043 1.0000 80 chrIV:7390314-7390394 1.0000 80 chrV:13090445-13090525 1.0000 80 chrV:7759436-7759516 1.0000 80 chrIII:11203169-11203249 1.0000 80 chrIII:1785945-1786025 1.0000 80 chrIV:8629740-8629820 1.0000 80 chrX:4982284-4982364 1.0000 80 chrII:10543819-10543899 1.0000 80 chrX:8163727-8163807 1.0000 80 chrIII:7723820-7723900 1.0000 80 chrX:3191623-3191703 1.0000 80 chrX:3822529-3822609 1.0000 80 chrV:8435488-8435568 1.0000 80 chrX:4142601-4142681 1.0000 80 chrV:1481018-1481098 1.0000 80 chrIII:7358770-7358850 1.0000 80 chrV:8130269-8130349 1.0000 80 chrI:14764936-14765016 1.0000 80 chrI:8302135-8302215 1.0000 80 chrI:9604529-9604609 1.0000 80 chrV:11921456-11921536 1.0000 80 chrV:18638542-18638622 1.0000 80 chrIII:6655930-6656010 1.0000 80 chrIV:15696943-15697023 1.0000 80 chrIII:13716341-13716421 1.0000 80 chrV:8802240-8802320 1.0000 80 chrIV:2603858-2603938 1.0000 80 chrI:3829800-3829880 1.0000 80 chrI:7548357-7548437 1.0000 80 chrIII:764538-764618 1.0000 80 chrX:2089606-2089686 1.0000 80 chrX:15653406-15653486 1.0000 80 chrIV:11793336-11793416 1.0000 80 chrV:14835287-14835367 1.0000 80 chrI:10777480-10777560 1.0000 80 chrX:7327243-7327323 1.0000 80 chrIII:5685643-5685723 1.0000 80 chrI:9500922-9501002 1.0000 80 chrX:3711862-3711942 1.0000 80 chrX:14636838-14636918 1.0000 80 chrV:16352423-16352503 1.0000 80 chrIII:11981695-11981775 1.0000 80 chrII:2987287-2987367 1.0000 80 chrIII:9827663-9827743 1.0000 80 chrX:16202323-16202403 1.0000 80 chrI:9014057-9014137 1.0000 80 chrIII:8355217-8355297 1.0000 80 chrX:5976758-5976838 1.0000 80 chrI:13351053-13351133 1.0000 80 chrV:18627587-18627667 1.0000 80 chrII:11305864-11305944 1.0000 80 chrIII:10819888-10819968 1.0000 80 chrI:8580258-8580338 1.0000 80 chrIII:8785617-8785697 1.0000 80 chrII:7325513-7325593 1.0000 80 chrI:13036592-13036672 1.0000 80 chrIV:2998651-2998731 1.0000 80 chrII:5276891-5276971 1.0000 80 chrIV:10500152-10500232 1.0000 80 chrII:6782883-6782963 1.0000 80 chrI:12905941-12906021 1.0000 80 chrIV:3874663-3874743 1.0000 80 chrII:7887475-7887555 1.0000 80 chrIV:4026139-4026219 1.0000 80 chrX:15705042-15705122 1.0000 80 chrX:14557513-14557593 1.0000 80 chrI:9849582-9849662 1.0000 80 chrX:16131223-16131303 1.0000 80 chrV:20714160-20714240 1.0000 80 chrX:3839475-3839555 1.0000 80 chrIII:67201-67281 1.0000 80 chrV:4499359-4499439 1.0000 80 chrIII:9905538-9905618 1.0000 80 chrV:9561888-9561968 1.0000 80 chrIII:6988310-6988390 1.0000 80 chrX:17670511-17670591 1.0000 80 chrI:14939884-14939964 1.0000 80 chrX:10656975-10657055 1.0000 80 chrIV:6879066-6879146 1.0000 80 chrV:5628297-5628377 1.0000 80 chrIII:5999801-5999881 1.0000 80 chrII:9970840-9970920 1.0000 80 chrI:14936700-14936780 1.0000 80 chrIII:11738636-11738716 1.0000 80 chrIII:8201847-8201927 1.0000 80 chrX:1022049-1022129 1.0000 80 chrII:8478951-8479031 1.0000 80 chrV:9545379-9545459 1.0000 80 chrI:12920952-12921032 1.0000 80 chrIII:12843009-12843089 1.0000 80 chrIV:2993401-2993481 1.0000 80 chrX:7234994-7235074 1.0000 80 chrX:8016049-8016129 1.0000 80 chrI:14346762-14346842 1.0000 80 chrI:6810466-6810546 1.0000 80 chrX:15345812-15345892 1.0000 80 chrIV:9928608-9928688 1.0000 80 chrIV:6751363-6751443 1.0000 80 chrX:15395755-15395835 1.0000 80 chrI:7307156-7307236 1.0000 80 chrX:2604800-2604880 1.0000 80 chrI:8307653-8307733 1.0000 80 chrI:4035435-4035515 1.0000 80 chrIV:5548954-5549034 1.0000 80 chrIII:9662695-9662775 1.0000 80 chrIII:10284382-10284462 1.0000 80 chrX:2288168-2288248 1.0000 80 chrI:13411511-13411591 1.0000 80 chrV:18868688-18868768 1.0000 80 chrV:11638853-11638933 1.0000 80 chrIV:15561434-15561514 1.0000 80 chrV:10677718-10677798 1.0000 80 chrI:2580230-2580310 1.0000 80 chrII:6683818-6683898 1.0000 80 chrV:4694724-4694804 1.0000 80 chrI:6092718-6092798 1.0000 80 chrIV:15017046-15017126 1.0000 80 chrII:13674006-13674086 1.0000 80 chrIV:5103464-5103544 1.0000 80 chrV:20710616-20710696 1.0000 80 chrX:3956838-3956918 1.0000 80 chrIII:10153106-10153186 1.0000 80 chrV:2068108-2068188 1.0000 80 chrIV:8796297-8796377 1.0000 80 chrIV:4215560-4215640 1.0000 80 chrX:14016871-14016951 1.0000 80 chrX:16040394-16040474 1.0000 80 chrII:6891375-6891455 1.0000 80 chrX:7478625-7478705 1.0000 80 chrIII:5688404-5688484 1.0000 80 chrI:12571910-12571990 1.0000 80 chrX:13366012-13366092 1.0000 80 chrV:18658801-18658881 1.0000 80 chrX:14640024-14640104 1.0000 80 chrII:7327142-7327222 1.0000 80 chrX:1395952-1396032 1.0000 80 chrI:7662204-7662284 1.0000 80 chrII:10558691-10558771 1.0000 80 chrIV:6806758-6806838 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_K12H6.12/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/K12H6.12.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.265 C 0.233 G 0.242 T 0.261 Background letter frequencies (from file dataset with add-one prior applied): A 0.264 C 0.233 G 0.242 T 0.261 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TYTYTYTC MEME-1 width = 8 sites = 82 llr = 613 E-value = 1.2e-025 ******************************************************************************** -------------------------------------------------------------------------------- Motif TYTYTYTC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :4:516:8 probability G :1:::::1 matrix T a6a594a1 bits 2.1 1.9 * * 1.7 * * * 1.5 * * * Relative 1.3 * * * * Entropy 1.1 * ****** (10.8 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTCTC consensus C C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTYTYTC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:6806758-6806838 11 3.25e-05 TCTTTTTCTG TTTTTCTC TGCCTGCTCC chrX:7478625-7478705 58 3.25e-05 CCGTTCGTTT TTTCTCTC CCTTCCCTCC chrV:2068108-2068188 53 3.25e-05 CGTCCCTCTT TTTTTCTC TGGACCTATG chrIV:5103464-5103544 44 3.25e-05 AACAAAACAT TTtctctc tcaattctct chrV:10677718-10677798 17 3.25e-05 gtcttcgtcg tttttctC ACTACGTACT chrIII:9662695-9662775 30 3.25e-05 ACTTTGGCCC TTTTTCTC ATTCTTCCGG chrIV:9928608-9928688 9 3.25e-05 TAGTGGTC TTTTTCTC TTTCTTCTTT chrV:9545379-9545459 51 3.25e-05 TATTTAACTA TTTCTCTC GGTGTGGGCG chrV:4499359-4499439 1 3.25e-05 . TTTCTCTC TCTTTCGGTG chrI:13351053-13351133 3 3.25e-05 tg tttctctc tctctctctc chrV:16352423-16352503 18 3.25e-05 tttgttttct tttttctc ttttcctatc chrIII:6655930-6656010 8 3.25e-05 CCTCGTT TTTCTCTC GTTTGCCTCA chrV:8130269-8130349 41 3.25e-05 TCCGTTGTTC TTTTTCTC TAATTCTCAT chrIII:7358770-7358850 49 3.25e-05 TTCCCATTTT TTTCTCTC TCACTGGCAA chrIII:7723820-7723900 2 3.25e-05 C TTTCTCTC TTTCTCTATC chrIII:1785945-1786025 70 3.25e-05 CGACACTCGT TTTTTCTC TTC chrV:10862014-10862094 39 3.25e-05 cctctttccc tttttctc ttcactctct chrV:14368491-14368571 1 3.25e-05 . TTTTTCTC CAACATCTCA chrX:17519656-17519736 29 3.25e-05 CACGGCCCCC TTTCTCTC GTGGGGGCCC chrI:9092466-9092546 50 3.25e-05 cttcctcatt tttctctc ttttttcttt chrIII:7724586-7724666 71 3.25e-05 GCGAAACACA TTTCTCTC CC chrI:14346762-14346842 56 6.15e-05 TTTCTCTAAA TCTCTCTC ATCTTTTTTT chrII:6782883-6782963 73 6.15e-05 CCGTTTTGTC TCTCTCTC chrV:11921456-11921536 55 6.15e-05 TTGTTCTCTT TCTTTCTC TTTACATTAT chrV:20417938-20418018 51 6.15e-05 TGCGtctctc tctctctc tcactcgctG chrI:4917720-4917800 42 6.15e-05 GGCTCTCTCT TCTCTCTC ACCACCACCA chrI:8013465-8013545 45 6.15e-05 CATCGTTGTC tctttctc tttccttctt chrIV:11744387-11744467 66 6.15e-05 CGTCTATCTC TCTCTCTC GCTATCT chrIV:15017046-15017126 61 9.79e-05 TCTTCCTCCC TTTTTTTC TATTCGCCAA chrIV:6879066-6879146 4 9.79e-05 TGG TTTTTTTC TTTTCTTCTC chrI:14939884-14939964 16 9.79e-05 tctctAGTTT TTTTTTTC TGAAAAAGAG chrIV:3874663-3874743 38 9.79e-05 GTTTTTGGCA TTTCTTTC GCTGTCTCTC chrIV:15696943-15697023 25 9.79e-05 CTCTTTTTAT TTTTTTTC TACATCATAG chrII:7836706-7836786 4 9.79e-05 TTG TTTCTTTC ATTCACTGCG chrIV:5598803-5598883 33 9.79e-05 TCTGTGTCTG TTtttttc tattttttgt chrII:9606784-9606864 32 9.79e-05 TTTTGCAATC TTTTTTTC GTTTGTTGTT chrIII:3898945-3899025 4 9.79e-05 ATC TTTTTTTC CACCAACCAC chrIV:12365102-12365182 65 9.79e-05 ATTCGCCTCG TTTTTTTC TACACGGC chrX:5976758-5976838 33 1.30e-04 CCTTATCCGC TCTCTTTC ATCCTTTCGT chrV:8435488-8435568 70 1.30e-04 AGCACAAATG TCTCTTTC ATG chrIII:10151890-10151970 38 1.59e-04 TCCTTCCATC TTTTCCTC GTCCCCACCC chrX:15395755-15395835 30 1.96e-04 cttcatctgc tttttctt cCGAATCAGA chrIV:8796297-8796377 27 2.85e-04 ttgcctccct tcttcctc ttcttctCAT chrI:6092718-6092798 47 2.85e-04 AGAAAGAGCG TTTCTCTG TCGTCTCGCA chrI:2580230-2580310 72 2.85e-04 GAGAGACAGG TCTCCCTC C chrI:10777480-10777560 52 2.85e-04 CTCGTATGTA TTTCTCTG TGCTCTCTTC chrIII:13716341-13716421 24 2.85e-04 AAAAGACTGC TTTCTCTG TTAAAGCACA chrI:14764936-14765016 14 2.85e-04 GCCACGCCCC TTTTTCTG TGAGCACACA chrV:6043963-6044043 41 2.85e-04 ATTCCCGTTA TGTCTCTC AATGTCTCCG chrV:1943642-1943722 41 2.85e-04 TCGcctttct tcttcctc ttctttcctc chrV:7804287-7804367 68 2.85e-04 TTCCGTTTTT TGTCTCTC ACACG chrV:12819274-12819354 72 2.85e-04 TACGCCGTCG TTTCTCTG A chrII:15044000-15044080 62 2.85e-04 TCGTGCCTCG TGTCTCTC GTCGTCACGC chrX:4899774-4899854 26 2.85e-04 GTCTGCAATC TCTCCCTC TTCAACATTC chrI:12920952-12921032 45 3.18e-04 GCGGTCTCTG TCTCTCTT TTCGTCCTTT chrX:15705042-15705122 1 3.18e-04 . TCTCTCTT CTTACTCTGA chrX:7327243-7327323 38 3.18e-04 AGTGCCTCTA TCTTTCTT TTCTTCACTG chrV:14948744-14948824 24 3.18e-04 GGTCTCCCAG TCTCTCTT GTCATGTGTT chrX:10656775-10656855 65 3.50e-04 AGTGCGAGTC TTTTCTTC TCATTCAC chrIII:5688404-5688484 1 3.81e-04 . TCTTTCTG TTGTGTGTGT chrII:13196867-13196947 64 3.81e-04 AATTCCATGC TCTCTCTG ACTCAATAT chrV:18490595-18490675 50 3.81e-04 TATTGATCCA TCTCTCTG TGCAGGGAGG chrIV:4215560-4215640 61 4.21e-04 TGTTGCTCCG TTTCTTTT TTTTTGTCGT chrIII:9827663-9827743 28 4.21e-04 AAAACCTGAT TTTCTTTT GATAAAAAAG chrIII:9702833-9702913 45 4.21e-04 ATACTCTTAC TTTCTTTT CGTCTACCCT chrX:14016871-14016951 49 5.22e-04 TTGGCTAGCG TCTTCTTC TACTTGCCCC chrX:3956838-3956918 26 5.22e-04 CGCCTGCCAT TCTTCTTC CCCCACCGCC chrX:17670511-17670591 31 5.22e-04 Ctcttcttct tcttcttc ttcACCGGCA chrIII:67201-67281 8 5.22e-04 CTCGTCG TCTTCTTC GAGAAGGTCG chrI:9849582-9849662 45 5.22e-04 TAAAAACCCA TTTTTTTG TCCGAGAGGG chrX:10654723-10654803 11 5.22e-04 TCGTTGTTGA TGTTTTTC GTTCATGGCA chrV:10041559-10041639 9 5.22e-04 TTTCCTCA TCTTCTTC CTATGGTTTG chrI:12549925-12550005 43 5.22e-04 AAGGAGCACA TGTTTTTC ATGCGCGCGC chrIV:14618679-14618759 30 5.22e-04 CGCGTTAGCA TGTTTTTC ACCCAATTTT chrIII:10367567-10367647 9 5.22e-04 AATGCCCA TCTTCTTC CGGTGCTACC chrV:20714160-20714240 25 5.51e-04 attcgggaat tttttccc aaaaaaatgt chrV:7759436-7759516 6 5.51e-04 CTCTA TTTTTCCC ACTTCTCATC chrII:7319698-7319778 6 5.51e-04 TCCCT TTTCTCCC ATGCGCGATC chrIII:4379186-4379266 23 5.51e-04 CGCTCGGTGG TTTTTCCC GACTAGCGAG chrII:11305864-11305944 34 5.87e-04 TTAGTAGATG TCTCTTTT GAATACCAGT chrIII:5950034-5950114 47 5.87e-04 CGACGGCGGC TCTCTTTT TTCGTTTTTC chrX:2321949-2322029 3 5.87e-04 GG TCTTTTTT CCTGCCTCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTYTYTC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:6806758-6806838 3.2e-05 10_[+1]_62 chrX:7478625-7478705 3.2e-05 57_[+1]_15 chrV:2068108-2068188 3.2e-05 52_[+1]_20 chrIV:5103464-5103544 3.2e-05 43_[+1]_29 chrV:10677718-10677798 3.2e-05 16_[+1]_56 chrIII:9662695-9662775 3.2e-05 29_[+1]_43 chrIV:9928608-9928688 3.2e-05 8_[+1]_64 chrV:9545379-9545459 3.2e-05 50_[+1]_22 chrV:4499359-4499439 3.2e-05 [+1]_72 chrI:13351053-13351133 3.2e-05 2_[+1]_70 chrV:16352423-16352503 3.2e-05 17_[+1]_55 chrIII:6655930-6656010 3.2e-05 7_[+1]_65 chrV:8130269-8130349 3.2e-05 40_[+1]_32 chrIII:7358770-7358850 3.2e-05 48_[+1]_24 chrIII:7723820-7723900 3.2e-05 1_[+1]_71 chrIII:1785945-1786025 3.2e-05 69_[+1]_3 chrV:10862014-10862094 3.2e-05 38_[+1]_34 chrV:14368491-14368571 3.2e-05 [+1]_72 chrX:17519656-17519736 3.2e-05 28_[+1]_44 chrI:9092466-9092546 3.2e-05 49_[+1]_23 chrIII:7724586-7724666 3.2e-05 70_[+1]_2 chrI:14346762-14346842 6.1e-05 55_[+1]_17 chrII:6782883-6782963 6.1e-05 72_[+1] chrV:11921456-11921536 6.1e-05 54_[+1]_18 chrV:20417938-20418018 6.1e-05 50_[+1]_22 chrI:4917720-4917800 6.1e-05 41_[+1]_31 chrI:8013465-8013545 6.1e-05 44_[+1]_28 chrIV:11744387-11744467 6.1e-05 65_[+1]_7 chrIV:15017046-15017126 9.8e-05 60_[+1]_12 chrIV:6879066-6879146 9.8e-05 3_[+1]_69 chrI:14939884-14939964 9.8e-05 15_[+1]_57 chrIV:3874663-3874743 9.8e-05 37_[+1]_35 chrIV:15696943-15697023 9.8e-05 24_[+1]_48 chrII:7836706-7836786 9.8e-05 3_[+1]_69 chrIV:5598803-5598883 9.8e-05 32_[+1]_40 chrII:9606784-9606864 9.8e-05 31_[+1]_41 chrIII:3898945-3899025 9.8e-05 3_[+1]_69 chrIV:12365102-12365182 9.8e-05 64_[+1]_8 chrX:5976758-5976838 0.00013 32_[+1]_40 chrV:8435488-8435568 0.00013 69_[+1]_3 chrIII:10151890-10151970 0.00016 37_[+1]_35 chrX:15395755-15395835 0.0002 29_[+1]_43 chrIV:8796297-8796377 0.00029 26_[+1]_46 chrI:6092718-6092798 0.00029 46_[+1]_26 chrI:2580230-2580310 0.00029 71_[+1]_1 chrI:10777480-10777560 0.00029 51_[+1]_21 chrIII:13716341-13716421 0.00029 23_[+1]_49 chrI:14764936-14765016 0.00029 13_[+1]_59 chrV:6043963-6044043 0.00029 40_[+1]_32 chrV:1943642-1943722 0.00029 40_[+1]_32 chrV:7804287-7804367 0.00029 67_[+1]_5 chrV:12819274-12819354 0.00029 71_[+1]_1 chrII:15044000-15044080 0.00029 61_[+1]_11 chrX:4899774-4899854 0.00029 25_[+1]_47 chrI:12920952-12921032 0.00032 44_[+1]_28 chrX:15705042-15705122 0.00032 [+1]_72 chrX:7327243-7327323 0.00032 37_[+1]_35 chrV:14948744-14948824 0.00032 23_[+1]_49 chrX:10656775-10656855 0.00035 64_[+1]_8 chrIII:5688404-5688484 0.00038 [+1]_72 chrII:13196867-13196947 0.00038 63_[+1]_9 chrV:18490595-18490675 0.00038 49_[+1]_23 chrIV:4215560-4215640 0.00042 60_[+1]_12 chrIII:9827663-9827743 0.00042 27_[+1]_45 chrIII:9702833-9702913 0.00042 44_[+1]_28 chrX:14016871-14016951 0.00052 48_[+1]_24 chrX:3956838-3956918 0.00052 25_[+1]_47 chrX:17670511-17670591 0.00052 30_[+1]_42 chrIII:67201-67281 0.00052 7_[+1]_65 chrI:9849582-9849662 0.00052 44_[+1]_28 chrX:10654723-10654803 0.00052 10_[+1]_62 chrV:10041559-10041639 0.00052 8_[+1]_64 chrI:12549925-12550005 0.00052 42_[+1]_30 chrIV:14618679-14618759 0.00052 29_[+1]_43 chrIII:10367567-10367647 0.00052 8_[+1]_64 chrV:20714160-20714240 0.00055 24_[+1]_48 chrV:7759436-7759516 0.00055 5_[+1]_67 chrII:7319698-7319778 0.00055 5_[+1]_67 chrIII:4379186-4379266 0.00055 22_[+1]_50 chrII:11305864-11305944 0.00059 33_[+1]_39 chrIII:5950034-5950114 0.00059 46_[+1]_26 chrX:2321949-2322029 0.00059 2_[+1]_70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTYTYTC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TYTYTYTC width=8 seqs=82 chrIV:6806758-6806838 ( 11) TTTTTCTC 1 chrX:7478625-7478705 ( 58) TTTCTCTC 1 chrV:2068108-2068188 ( 53) TTTTTCTC 1 chrIV:5103464-5103544 ( 44) TTTCTCTC 1 chrV:10677718-10677798 ( 17) TTTTTCTC 1 chrIII:9662695-9662775 ( 30) TTTTTCTC 1 chrIV:9928608-9928688 ( 9) TTTTTCTC 1 chrV:9545379-9545459 ( 51) TTTCTCTC 1 chrV:4499359-4499439 ( 1) TTTCTCTC 1 chrI:13351053-13351133 ( 3) TTTCTCTC 1 chrV:16352423-16352503 ( 18) TTTTTCTC 1 chrIII:6655930-6656010 ( 8) TTTCTCTC 1 chrV:8130269-8130349 ( 41) TTTTTCTC 1 chrIII:7358770-7358850 ( 49) TTTCTCTC 1 chrIII:7723820-7723900 ( 2) TTTCTCTC 1 chrIII:1785945-1786025 ( 70) TTTTTCTC 1 chrV:10862014-10862094 ( 39) TTTTTCTC 1 chrV:14368491-14368571 ( 1) TTTTTCTC 1 chrX:17519656-17519736 ( 29) TTTCTCTC 1 chrI:9092466-9092546 ( 50) TTTCTCTC 1 chrIII:7724586-7724666 ( 71) TTTCTCTC 1 chrI:14346762-14346842 ( 56) TCTCTCTC 1 chrII:6782883-6782963 ( 73) TCTCTCTC 1 chrV:11921456-11921536 ( 55) TCTTTCTC 1 chrV:20417938-20418018 ( 51) TCTCTCTC 1 chrI:4917720-4917800 ( 42) TCTCTCTC 1 chrI:8013465-8013545 ( 45) TCTTTCTC 1 chrIV:11744387-11744467 ( 66) TCTCTCTC 1 chrIV:15017046-15017126 ( 61) TTTTTTTC 1 chrIV:6879066-6879146 ( 4) TTTTTTTC 1 chrI:14939884-14939964 ( 16) TTTTTTTC 1 chrIV:3874663-3874743 ( 38) TTTCTTTC 1 chrIV:15696943-15697023 ( 25) TTTTTTTC 1 chrII:7836706-7836786 ( 4) TTTCTTTC 1 chrIV:5598803-5598883 ( 33) TTTTTTTC 1 chrII:9606784-9606864 ( 32) TTTTTTTC 1 chrIII:3898945-3899025 ( 4) TTTTTTTC 1 chrIV:12365102-12365182 ( 65) TTTTTTTC 1 chrX:5976758-5976838 ( 33) TCTCTTTC 1 chrV:8435488-8435568 ( 70) TCTCTTTC 1 chrIII:10151890-10151970 ( 38) TTTTCCTC 1 chrX:15395755-15395835 ( 30) TTTTTCTT 1 chrIV:8796297-8796377 ( 27) TCTTCCTC 1 chrI:6092718-6092798 ( 47) TTTCTCTG 1 chrI:2580230-2580310 ( 72) TCTCCCTC 1 chrI:10777480-10777560 ( 52) TTTCTCTG 1 chrIII:13716341-13716421 ( 24) TTTCTCTG 1 chrI:14764936-14765016 ( 14) TTTTTCTG 1 chrV:6043963-6044043 ( 41) TGTCTCTC 1 chrV:1943642-1943722 ( 41) TCTTCCTC 1 chrV:7804287-7804367 ( 68) TGTCTCTC 1 chrV:12819274-12819354 ( 72) TTTCTCTG 1 chrII:15044000-15044080 ( 62) TGTCTCTC 1 chrX:4899774-4899854 ( 26) TCTCCCTC 1 chrI:12920952-12921032 ( 45) TCTCTCTT 1 chrX:15705042-15705122 ( 1) TCTCTCTT 1 chrX:7327243-7327323 ( 38) TCTTTCTT 1 chrV:14948744-14948824 ( 24) TCTCTCTT 1 chrX:10656775-10656855 ( 65) TTTTCTTC 1 chrIII:5688404-5688484 ( 1) TCTTTCTG 1 chrII:13196867-13196947 ( 64) TCTCTCTG 1 chrV:18490595-18490675 ( 50) TCTCTCTG 1 chrIV:4215560-4215640 ( 61) TTTCTTTT 1 chrIII:9827663-9827743 ( 28) TTTCTTTT 1 chrIII:9702833-9702913 ( 45) TTTCTTTT 1 chrX:14016871-14016951 ( 49) TCTTCTTC 1 chrX:3956838-3956918 ( 26) TCTTCTTC 1 chrX:17670511-17670591 ( 31) TCTTCTTC 1 chrIII:67201-67281 ( 8) TCTTCTTC 1 chrI:9849582-9849662 ( 45) TTTTTTTG 1 chrX:10654723-10654803 ( 11) TGTTTTTC 1 chrV:10041559-10041639 ( 9) TCTTCTTC 1 chrI:12549925-12550005 ( 43) TGTTTTTC 1 chrIV:14618679-14618759 ( 30) TGTTTTTC 1 chrIII:10367567-10367647 ( 9) TCTTCTTC 1 chrV:20714160-20714240 ( 25) TTTTTCCC 1 chrV:7759436-7759516 ( 6) TTTTTCCC 1 chrII:7319698-7319778 ( 6) TTTCTCCC 1 chrIII:4379186-4379266 ( 23) TTTTTCCC 1 chrII:11305864-11305944 ( 34) TCTCTTTT 1 chrIII:5950034-5950114 ( 47) TCTCTTTT 1 chrX:2321949-2322029 ( 3) TCTTTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTYTYTC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.98426 E= 1.2e-025 -1300 -1300 -1300 194 -1300 60 -172 113 -1300 -1300 -1300 194 -1300 107 -1300 97 -1300 -67 -1300 171 -1300 147 -1300 44 -1300 -225 -1300 186 -1300 170 -114 -96 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTYTYTC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 82 E= 1.2e-025 0.000000 0.000000 0.000000 1.000000 0.000000 0.353659 0.073171 0.573171 0.000000 0.000000 0.000000 1.000000 0.000000 0.487805 0.000000 0.512195 0.000000 0.146341 0.000000 0.853659 0.000000 0.646341 0.000000 0.353659 0.000000 0.048780 0.000000 0.951220 0.000000 0.756098 0.109756 0.134146 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TYTYTYTC MEME-1 regular expression -------------------------------------------------------------------------------- T[TC]T[TC]T[CT]TC -------------------------------------------------------------------------------- Time 5.24 secs. ******************************************************************************** ******************************************************************************** MOTIF RAGARAAA MEME-2 width = 8 sites = 80 llr = 589 E-value = 1.7e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif RAGARAAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 6a3a5a88 pos.-specific C 1:1::::: probability G 3:6:5:22 matrix T :::::::: bits 2.1 1.9 * * * 1.7 * * * 1.5 * * * Relative 1.3 * * *** Entropy 1.1 * ***** (10.6 bits) 0.8 ** ***** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAGAAAAA consensus G A G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGARAAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:10558691-10558771 14 1.98e-05 AGATAGGTTC AAGAGAAA ATGATTTTTG chrIV:15561434-15561514 58 1.98e-05 CGCGATGAGG AAGAGAAA AGGGGGAAGA chrIII:8201847-8201927 51 1.98e-05 TAGGAGAGAG AAGAGAAA GGGAGAAGCT chrIII:8355217-8355297 14 1.98e-05 GACGAGATGC AAGAGAAA TAGAGAAAGG chrIII:9827663-9827743 2 1.98e-05 C AAGAGAAA ATAATGCGAA chrV:6341329-6341409 17 1.98e-05 CTgaaaaggg aagagaaa gagacgtcga chrI:7662204-7662284 43 4.15e-05 GGCGCGCAAA AAGAAAAA AGAATGAACA chrX:10656975-10657055 41 4.15e-05 TGAAAAAAAA AAGAAAAA CAGGCAATAG chrIII:9905538-9905618 68 4.15e-05 GGCATGACGG aagaaaaa accaa chrV:18627587-18627667 43 4.15e-05 CTGGAAATTG AAGAAAAA ACGAAAAAAA chrX:4142601-4142681 33 4.15e-05 CATACTTGGA AAGAAAAA CGAAAAAGAG chrIV:14260911-14260991 52 4.15e-05 TAAGAAACAG AAGAAAAA ATATGTGAAG chrIV:5588484-5588564 6 4.15e-05 AAAAA AAGAAAAA CAAGGTTATT chrII:9281803-9281883 14 4.15e-05 TGCGAGAGAA AAGAAAAA AGAAAACGAA chrI:2580230-2580310 30 5.96e-05 agaGGGGGTG GAGAGAAA TATAGATGAA chrV:11638853-11638933 65 5.96e-05 AGAAGAAGAA GAGAGAAA GAAGACTC chrI:5140419-5140499 19 5.96e-05 gagagagatg gagagaAA CTCGGGAAAC chrIII:3984199-3984279 17 5.96e-05 GGGCGCCAGT GAGAGAAA GATCAAATAA chrV:10722120-10722200 29 5.96e-05 AACTCTTTTG GAGAGAAA AACTCTAACT chrI:14346762-14346842 22 7.95e-05 GTTAATGCGG GAGAAAAA GGCGCGGCGC chrII:5276891-5276971 36 7.95e-05 CTCTGAAATG GAGAAAAA AGAGGCAAAA chrIV:16658835-16658915 54 7.95e-05 AGCTCGCGTG GAGAAAAA GAAAATAACT chrI:12548100-12548180 63 7.95e-05 GCCAAAGTTA GAGAAAAA GAGACATAGA chrX:16129038-16129118 26 7.95e-05 AGGCCGAGAT GAGAAAAA CAAGGAGGCA chrV:14835287-14835367 8 1.01e-04 GGGAAAG AAAAGAAA AGTGAGAAGA chrV:5963838-5963918 68 1.01e-04 GGAGAGACGG AAAAGAAA AGTGA chrV:10041559-10041639 43 1.01e-04 AAAGGAGGCA AAAAGAAA CACGATGTGT chrII:13196867-13196947 5 1.01e-04 CACA AAAAGAAA CATTTCAATG chrX:14640024-14640104 26 1.25e-04 GGTCCGTGGA AAAAAAAA GAAGAAGAGG chrV:18868688-18868768 72 1.25e-04 AAAGGAGACG AAAAAAAA C chrV:9561888-9561968 41 1.25e-04 GGGGGAACTG Aaaaaaaa agaagaggat chrV:8802240-8802320 48 1.25e-04 AGGGAAACTA AAAAAAAA GATTTTTGAC chrX:3822529-3822609 69 1.25e-04 ACATATGCGG AAAAAAAA GAGT chrIII:13724591-13724671 2 1.25e-04 t aaaaaaaa tgtgacgtca chrX:13147319-13147399 61 1.25e-04 AATAACGTGA AAAAAAAA GGAAAATGTG chrI:13411511-13411591 51 1.43e-04 TTTTCCAAAT AAGAGAGA CGCAGTTGCA chrX:17670511-17670591 69 1.43e-04 CACAGATAGA AAGAGAGA AGTT chrI:13036592-13036672 40 1.43e-04 TACCGGGAAC AAGAGAGA CATAGAGATG chrIV:5582392-5582472 31 1.43e-04 atacaaacag aagagaga gacgagagac chrI:9598354-9598434 73 1.43e-04 TCACTTGGAG AAGAGAGA chrX:16040394-16040474 29 2.20e-04 AGGGGGCACA AACAGAAA GACCAGGCGG chrIV:5103464-5103544 19 2.20e-04 TGACGAGACG AAGAGAAG TTGGAGAAAC chrIV:2998651-2998731 16 2.20e-04 GCGAAAAGTG GAAAGAAA GGCAGTGAAA chrI:8580258-8580338 50 2.20e-04 GGAAAAGGAG AAGAGAAG GAAAACAGAC chrI:14764936-14765016 47 2.20e-04 CCTagaaagg aagagaag ggacagaaat chrI:12571910-12571990 37 2.82e-04 CACGAAGCAC AACAAAAA TAGAGTCATG chrIV:6751363-6751443 36 2.82e-04 AAGATCAGCA AAGAAAAG TGAAAAAACA chrII:7887475-7887555 52 2.82e-04 TTTCTCGGGA AACAAAAA ATGACTCACA chrIII:11834322-11834402 73 2.82e-04 CAGCAACAAC AACAAAAA chrX:12186221-12186301 56 2.82e-04 GTATGTGATG AACAAAAA ACCGAGCGCC chrIII:5688404-5688484 19 2.99e-04 TTGTGTGTGT gagagaga tagagagagt chrII:8796584-8796664 3 2.99e-04 ga gagagaga ATAGGCGGAC chrIV:5586456-5586536 30 2.99e-04 CTGGTAAAGT GAGAGAGA TGAGGAacac chrX:7234994-7235074 42 3.17e-04 CTCGGGAATT GAGAAAGA GCATGAGGTC chrX:16202323-16202403 66 3.17e-04 GATACGCATC GAGAAAGA GACGAAA chrI:9500922-9501002 1 3.17e-04 . GAGAAAGA AGCGAGACTC chrX:5140299-5140379 52 3.17e-04 CTGCGAGAGG GAGAAAGA GTGGGCACAT chrII:7327142-7327222 6 3.51e-04 GGAGC GAGAGAAG CTTGGCGACT chrIII:5685643-5685723 16 3.51e-04 AACCACGAGT GAGAGAAG TAGGAAAACA chrI:10777480-10777560 11 3.88e-04 CGGGGCGCCA GACAAAAA CAAGTCTCTG chrV:8435488-8435568 52 3.88e-04 TGGTCGAGCA GAGAAAAG AGCACAAATG chrX:6571236-6571316 58 3.88e-04 CCAGTTCCAA GACAAAAA GTCAAACAAA chrV:6342621-6342701 27 3.88e-04 tgtgtgcgtg GACAAAAA ACGCGGTCAA chrX:8952146-8952226 19 3.88e-04 CTAGAAAATA GAGAAAAG GGGAGGGACC chrI:14939884-14939964 27 4.26e-04 TTTTTTCTGA AAAAGAGA AGAAAGCACA chrX:16131223-16131303 2 4.26e-04 C CAGAGAAA CACGAGGAGT chrII:7836706-7836786 72 4.26e-04 ACACGGGGTG AAAAGAGA C chrIII:11185680-11185760 72 4.26e-04 AACACTCTTC CAGAGAAA A chrIII:764538-764618 73 4.66e-04 GAAAGACGAC CAGAAAAA chrIV:3135126-3135206 11 4.66e-04 GCCCTGCTCC AAAAAAGA CGACGTCGTC chrI:8312646-8312726 47 4.66e-04 AGAAGACGAC AAAAAAGA AGGCGAATCG chrIII:10153106-10153186 70 4.86e-04 AAAGGGGGTG AAAAGAAG AAA chrX:7218060-7218140 36 4.86e-04 CCCTGTTTGG AAAAGAAG ACGTGGTCAC chrX:8806521-8806601 15 5.60e-04 AAAAGGAGCG AACAGAGA GGGGAGGCGC chrI:4035435-4035515 61 6.53e-04 GTGGGGTGAG AACAGAAG ACGCGCAGAC chrV:6030568-6030648 61 6.53e-04 GTCGAGCAAC AACagaag atgagcgaca chrX:4899774-4899854 1 6.92e-04 . GAAAAAAG CCGCGATGTC chrV:4499359-4499439 53 7.63e-04 GGGAGAGTCA GAGAGAGG GAGCCCCGCC chrIII:8785617-8785697 33 7.63e-04 TGGGGAGCAG CAAAAAAA CTGGCGGTCG chrX:5653913-5653993 73 7.63e-04 CAGCAGACAG CAAAAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGARAAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:10558691-10558771 2e-05 13_[+2]_59 chrIV:15561434-15561514 2e-05 57_[+2]_15 chrIII:8201847-8201927 2e-05 50_[+2]_22 chrIII:8355217-8355297 2e-05 13_[+2]_59 chrIII:9827663-9827743 2e-05 1_[+2]_71 chrV:6341329-6341409 2e-05 16_[+2]_56 chrI:7662204-7662284 4.1e-05 42_[+2]_30 chrX:10656975-10657055 4.1e-05 40_[+2]_32 chrIII:9905538-9905618 4.1e-05 67_[+2]_5 chrV:18627587-18627667 4.1e-05 42_[+2]_30 chrX:4142601-4142681 4.1e-05 32_[+2]_40 chrIV:14260911-14260991 4.1e-05 51_[+2]_21 chrIV:5588484-5588564 4.1e-05 5_[+2]_67 chrII:9281803-9281883 4.1e-05 13_[+2]_59 chrI:2580230-2580310 6e-05 29_[+2]_43 chrV:11638853-11638933 6e-05 64_[+2]_8 chrI:5140419-5140499 6e-05 18_[+2]_54 chrIII:3984199-3984279 6e-05 16_[+2]_56 chrV:10722120-10722200 6e-05 28_[+2]_44 chrI:14346762-14346842 7.9e-05 21_[+2]_51 chrII:5276891-5276971 7.9e-05 35_[+2]_37 chrIV:16658835-16658915 7.9e-05 53_[+2]_19 chrI:12548100-12548180 7.9e-05 62_[+2]_10 chrX:16129038-16129118 7.9e-05 25_[+2]_47 chrV:14835287-14835367 0.0001 7_[+2]_65 chrV:5963838-5963918 0.0001 67_[+2]_5 chrV:10041559-10041639 0.0001 42_[+2]_30 chrII:13196867-13196947 0.0001 4_[+2]_68 chrX:14640024-14640104 0.00012 25_[+2]_47 chrV:18868688-18868768 0.00012 71_[+2]_1 chrV:9561888-9561968 0.00012 40_[+2]_32 chrV:8802240-8802320 0.00012 47_[+2]_25 chrX:3822529-3822609 0.00012 68_[+2]_4 chrIII:13724591-13724671 0.00012 1_[+2]_71 chrX:13147319-13147399 0.00012 60_[+2]_12 chrI:13411511-13411591 0.00014 50_[+2]_22 chrX:17670511-17670591 0.00014 68_[+2]_4 chrI:13036592-13036672 0.00014 39_[+2]_33 chrIV:5582392-5582472 0.00014 30_[+2]_42 chrI:9598354-9598434 0.00014 72_[+2] chrX:16040394-16040474 0.00022 28_[+2]_44 chrIV:5103464-5103544 0.00022 18_[+2]_54 chrIV:2998651-2998731 0.00022 15_[+2]_57 chrI:8580258-8580338 0.00022 49_[+2]_23 chrI:14764936-14765016 0.00022 46_[+2]_26 chrI:12571910-12571990 0.00028 36_[+2]_36 chrIV:6751363-6751443 0.00028 35_[+2]_37 chrII:7887475-7887555 0.00028 51_[+2]_21 chrIII:11834322-11834402 0.00028 72_[+2] chrX:12186221-12186301 0.00028 55_[+2]_17 chrIII:5688404-5688484 0.0003 18_[+2]_54 chrII:8796584-8796664 0.0003 2_[+2]_70 chrIV:5586456-5586536 0.0003 29_[+2]_43 chrX:7234994-7235074 0.00032 41_[+2]_31 chrX:16202323-16202403 0.00032 65_[+2]_7 chrI:9500922-9501002 0.00032 [+2]_72 chrX:5140299-5140379 0.00032 51_[+2]_21 chrII:7327142-7327222 0.00035 5_[+2]_67 chrIII:5685643-5685723 0.00035 15_[+2]_57 chrI:10777480-10777560 0.00039 10_[+2]_62 chrV:8435488-8435568 0.00039 51_[+2]_21 chrX:6571236-6571316 0.00039 57_[+2]_15 chrV:6342621-6342701 0.00039 26_[+2]_46 chrX:8952146-8952226 0.00039 18_[+2]_54 chrI:14939884-14939964 0.00043 26_[+2]_46 chrX:16131223-16131303 0.00043 1_[+2]_71 chrII:7836706-7836786 0.00043 71_[+2]_1 chrIII:11185680-11185760 0.00043 71_[+2]_1 chrIII:764538-764618 0.00047 72_[+2] chrIV:3135126-3135206 0.00047 10_[+2]_62 chrI:8312646-8312726 0.00047 46_[+2]_26 chrIII:10153106-10153186 0.00049 69_[+2]_3 chrX:7218060-7218140 0.00049 35_[+2]_37 chrX:8806521-8806601 0.00056 14_[+2]_58 chrI:4035435-4035515 0.00065 60_[+2]_12 chrV:6030568-6030648 0.00065 60_[+2]_12 chrX:4899774-4899854 0.00069 [+2]_72 chrV:4499359-4499439 0.00076 52_[+2]_20 chrIII:8785617-8785697 0.00076 32_[+2]_40 chrX:5653913-5653993 0.00076 72_[+2] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGARAAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RAGARAAA width=8 seqs=80 chrII:10558691-10558771 ( 14) AAGAGAAA 1 chrIV:15561434-15561514 ( 58) AAGAGAAA 1 chrIII:8201847-8201927 ( 51) AAGAGAAA 1 chrIII:8355217-8355297 ( 14) AAGAGAAA 1 chrIII:9827663-9827743 ( 2) AAGAGAAA 1 chrV:6341329-6341409 ( 17) AAGAGAAA 1 chrI:7662204-7662284 ( 43) AAGAAAAA 1 chrX:10656975-10657055 ( 41) AAGAAAAA 1 chrIII:9905538-9905618 ( 68) AAGAAAAA 1 chrV:18627587-18627667 ( 43) AAGAAAAA 1 chrX:4142601-4142681 ( 33) AAGAAAAA 1 chrIV:14260911-14260991 ( 52) AAGAAAAA 1 chrIV:5588484-5588564 ( 6) AAGAAAAA 1 chrII:9281803-9281883 ( 14) AAGAAAAA 1 chrI:2580230-2580310 ( 30) GAGAGAAA 1 chrV:11638853-11638933 ( 65) GAGAGAAA 1 chrI:5140419-5140499 ( 19) GAGAGAAA 1 chrIII:3984199-3984279 ( 17) GAGAGAAA 1 chrV:10722120-10722200 ( 29) GAGAGAAA 1 chrI:14346762-14346842 ( 22) GAGAAAAA 1 chrII:5276891-5276971 ( 36) GAGAAAAA 1 chrIV:16658835-16658915 ( 54) GAGAAAAA 1 chrI:12548100-12548180 ( 63) GAGAAAAA 1 chrX:16129038-16129118 ( 26) GAGAAAAA 1 chrV:14835287-14835367 ( 8) AAAAGAAA 1 chrV:5963838-5963918 ( 68) AAAAGAAA 1 chrV:10041559-10041639 ( 43) AAAAGAAA 1 chrII:13196867-13196947 ( 5) AAAAGAAA 1 chrX:14640024-14640104 ( 26) AAAAAAAA 1 chrV:18868688-18868768 ( 72) AAAAAAAA 1 chrV:9561888-9561968 ( 41) AAAAAAAA 1 chrV:8802240-8802320 ( 48) AAAAAAAA 1 chrX:3822529-3822609 ( 69) AAAAAAAA 1 chrIII:13724591-13724671 ( 2) AAAAAAAA 1 chrX:13147319-13147399 ( 61) AAAAAAAA 1 chrI:13411511-13411591 ( 51) AAGAGAGA 1 chrX:17670511-17670591 ( 69) AAGAGAGA 1 chrI:13036592-13036672 ( 40) AAGAGAGA 1 chrIV:5582392-5582472 ( 31) AAGAGAGA 1 chrI:9598354-9598434 ( 73) AAGAGAGA 1 chrX:16040394-16040474 ( 29) AACAGAAA 1 chrIV:5103464-5103544 ( 19) AAGAGAAG 1 chrIV:2998651-2998731 ( 16) GAAAGAAA 1 chrI:8580258-8580338 ( 50) AAGAGAAG 1 chrI:14764936-14765016 ( 47) AAGAGAAG 1 chrI:12571910-12571990 ( 37) AACAAAAA 1 chrIV:6751363-6751443 ( 36) AAGAAAAG 1 chrII:7887475-7887555 ( 52) AACAAAAA 1 chrIII:11834322-11834402 ( 73) AACAAAAA 1 chrX:12186221-12186301 ( 56) AACAAAAA 1 chrIII:5688404-5688484 ( 19) GAGAGAGA 1 chrII:8796584-8796664 ( 3) GAGAGAGA 1 chrIV:5586456-5586536 ( 30) GAGAGAGA 1 chrX:7234994-7235074 ( 42) GAGAAAGA 1 chrX:16202323-16202403 ( 66) GAGAAAGA 1 chrI:9500922-9501002 ( 1) GAGAAAGA 1 chrX:5140299-5140379 ( 52) GAGAAAGA 1 chrII:7327142-7327222 ( 6) GAGAGAAG 1 chrIII:5685643-5685723 ( 16) GAGAGAAG 1 chrI:10777480-10777560 ( 11) GACAAAAA 1 chrV:8435488-8435568 ( 52) GAGAAAAG 1 chrX:6571236-6571316 ( 58) GACAAAAA 1 chrV:6342621-6342701 ( 27) GACAAAAA 1 chrX:8952146-8952226 ( 19) GAGAAAAG 1 chrI:14939884-14939964 ( 27) AAAAGAGA 1 chrX:16131223-16131303 ( 2) CAGAGAAA 1 chrII:7836706-7836786 ( 72) AAAAGAGA 1 chrIII:11185680-11185760 ( 72) CAGAGAAA 1 chrIII:764538-764618 ( 73) CAGAAAAA 1 chrIV:3135126-3135206 ( 11) AAAAAAGA 1 chrI:8312646-8312726 ( 47) AAAAAAGA 1 chrIII:10153106-10153186 ( 70) AAAAGAAG 1 chrX:7218060-7218140 ( 36) AAAAGAAG 1 chrX:8806521-8806601 ( 15) AACAGAGA 1 chrI:4035435-4035515 ( 61) AACAGAAG 1 chrV:6030568-6030648 ( 61) AACAGAAG 1 chrX:4899774-4899854 ( 1) GAAAAAAG 1 chrV:4499359-4499439 ( 53) GAGAGAGG 1 chrIII:8785617-8785697 ( 33) CAAAAAAA 1 chrX:5653913-5653993 ( 73) CAAAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGARAAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.66841 E= 1.7e-019 118 -190 48 -1297 192 -1297 -1297 -1297 -1 -76 131 -1297 192 -1297 -1297 -1297 92 -1297 105 -1297 192 -1297 -1297 -1297 155 -1297 -10 -1297 164 -1297 -47 -1297 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGARAAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 80 E= 1.7e-019 0.600000 0.062500 0.337500 0.000000 1.000000 0.000000 0.000000 0.000000 0.262500 0.137500 0.600000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 1.000000 0.000000 0.000000 0.000000 0.775000 0.000000 0.225000 0.000000 0.825000 0.000000 0.175000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RAGARAAA MEME-2 regular expression -------------------------------------------------------------------------------- [AG]A[GA]A[AG]A[AG]A -------------------------------------------------------------------------------- Time 10.51 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGTGTGT MEME-3 width = 8 sites = 21 llr = 193 E-value = 5.0e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::1::: pos.-specific C ::::11:: probability G a:a:8:a: matrix T :a:a:9:9 bits 2.1 * * 1.9 *** 1.7 **** * 1.5 **** *** Relative 1.3 **** *** Entropy 1.1 **** *** (13.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GTGTGTGT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:5688404-5688484 11 1.59e-05 TCTTTCTGTT GTGTGTGT gagagagata chrX:7478625-7478705 37 1.59e-05 TCTCACTTGT GTGTGTGT GTGCCGTTCG chrX:16040394-16040474 3 1.59e-05 gt gtgtgtgt gGTGATGTAG chrV:11638853-11638933 1 1.59e-05 . gtgtgtgt CATTTACTTT chrIII:6988310-6988390 46 1.59e-05 AACTGTCCCA GTGTGTGT TTCGTCGTTA chrX:14557513-14557593 17 1.59e-05 Ctgtgtatgt gtgtgtgt gtTGCCCCCG chrIII:6655930-6656010 66 1.59e-05 GCTAGAGAAT GTGTGTGT GAGCATG chrV:10041559-10041639 57 1.59e-05 GAAACACGAT GTGTGTGT GGGGGACTGA chrV:6342621-6342701 12 1.59e-05 gtgtgtttgt gtgtgtgt gtgcgtgGAC chrIV:5586456-5586536 70 1.59e-05 acTAgtctgt gtgtgtgt gtg chrIII:11981695-11981775 54 3.12e-05 CTCTTCTTTC GTGTCTGT CGTCTCGCCG chrIV:8629740-8629820 11 3.12e-05 CTTCAACAAA GTGTCTGT GTTGGGTTGT chrII:9970840-9970920 15 6.28e-05 GGGAAAAGTT GTGTATGT GAAAAATGGT chrII:8744649-8744729 67 6.28e-05 AGCACGTGGG GTGTATGT ACGAAG chrX:8806521-8806601 51 6.28e-05 AAATAAAAGA GTGTGCGT GTGAGCGGCG chrX:9668693-9668773 26 6.28e-05 AGAGGGACGC GTGTGCGT AAACAAGCGG chrX:4142601-4142681 59 9.42e-05 AGTCATCGTT GTGTTTGT TTTTATTTTC chrX:10654723-10654803 51 9.42e-05 CCGTCCGAGC GTGTGTGC TTCCTCCCTT chrV:8802240-8802320 73 1.24e-04 GACGCCATTG GTGTGTCT chrIII:11185680-11185760 14 1.24e-04 CGTTCGCAAC GTGTGTGG CGTAGTGTCC chrX:3191623-3191703 66 1.40e-04 ACTGAAAGCA GTGAGTGT CGGTGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:5688404-5688484 1.6e-05 10_[+3]_62 chrX:7478625-7478705 1.6e-05 36_[+3]_36 chrX:16040394-16040474 1.6e-05 2_[+3]_70 chrV:11638853-11638933 1.6e-05 [+3]_72 chrIII:6988310-6988390 1.6e-05 45_[+3]_27 chrX:14557513-14557593 1.6e-05 16_[+3]_56 chrIII:6655930-6656010 1.6e-05 65_[+3]_7 chrV:10041559-10041639 1.6e-05 56_[+3]_16 chrV:6342621-6342701 1.6e-05 11_[+3]_61 chrIV:5586456-5586536 1.6e-05 69_[+3]_3 chrIII:11981695-11981775 3.1e-05 53_[+3]_19 chrIV:8629740-8629820 3.1e-05 10_[+3]_62 chrII:9970840-9970920 6.3e-05 14_[+3]_58 chrII:8744649-8744729 6.3e-05 66_[+3]_6 chrX:8806521-8806601 6.3e-05 50_[+3]_22 chrX:9668693-9668773 6.3e-05 25_[+3]_47 chrX:4142601-4142681 9.4e-05 58_[+3]_14 chrX:10654723-10654803 9.4e-05 50_[+3]_22 chrV:8802240-8802320 0.00012 72_[+3] chrIII:11185680-11185760 0.00012 13_[+3]_59 chrX:3191623-3191703 0.00014 65_[+3]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGTGTGT width=8 seqs=21 chrIII:5688404-5688484 ( 11) GTGTGTGT 1 chrX:7478625-7478705 ( 37) GTGTGTGT 1 chrX:16040394-16040474 ( 3) GTGTGTGT 1 chrV:11638853-11638933 ( 1) GTGTGTGT 1 chrIII:6988310-6988390 ( 46) GTGTGTGT 1 chrX:14557513-14557593 ( 17) GTGTGTGT 1 chrIII:6655930-6656010 ( 66) GTGTGTGT 1 chrV:10041559-10041639 ( 57) GTGTGTGT 1 chrV:6342621-6342701 ( 12) GTGTGTGT 1 chrIV:5586456-5586536 ( 70) GTGTGTGT 1 chrIII:11981695-11981775 ( 54) GTGTCTGT 1 chrIV:8629740-8629820 ( 11) GTGTCTGT 1 chrII:9970840-9970920 ( 15) GTGTATGT 1 chrII:8744649-8744729 ( 67) GTGTATGT 1 chrX:8806521-8806601 ( 51) GTGTGCGT 1 chrX:9668693-9668773 ( 26) GTGTGCGT 1 chrX:4142601-4142681 ( 59) GTGTTTGT 1 chrX:10654723-10654803 ( 51) GTGTGTGC 1 chrV:8802240-8802320 ( 73) GTGTGTCT 1 chrIII:11185680-11185760 ( 14) GTGTGTGG 1 chrX:3191623-3191703 ( 66) GTGAGTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0668 E= 5.0e-001 -1104 -1104 205 -1104 -1104 -1104 -1104 194 -1104 -1104 205 -1104 -247 -1104 -1104 187 -147 -129 166 -245 -1104 -129 -1104 179 -1104 -229 198 -1104 -1104 -229 -234 179 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 5.0e-001 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.047619 0.000000 0.000000 0.952381 0.095238 0.095238 0.761905 0.047619 0.000000 0.095238 0.000000 0.904762 0.000000 0.047619 0.952381 0.000000 0.000000 0.047619 0.047619 0.904762 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGTGTGT MEME-3 regular expression -------------------------------------------------------------------------------- GTGTGTGT -------------------------------------------------------------------------------- Time 15.05 secs. ******************************************************************************** ******************************************************************************** MOTIF ARCACACA MEME-4 width = 8 sites = 36 llr = 287 E-value = 1.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif ARCACACA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 751a:a19 pos.-specific C 3:9:9:9: probability G :4::1::1 matrix T :1:::::: bits 2.1 1.9 * * 1.7 * ** 1.5 ****** Relative 1.3 ****** Entropy 1.1 * ****** (11.5 bits) 0.8 * ****** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AACACACA consensus CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARCACACA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:14016871-14016951 25 3.11e-05 TCTCGCACAC AACACACA CAGCGGTTGG chrIV:15017046-15017126 26 3.11e-05 AGTAAGAGTA AACACACA GACGAGGGGA chrX:17670511-17670591 49 3.11e-05 ttcACCGGCA AACACACA TACACAGATA chrIII:11981695-11981775 17 3.11e-05 GCGCCGCAGC AGCACACA GGCCAATGGC chrI:14764936-14765016 24 3.11e-05 TTTTTCTGTG AGCACACA TAGAGCCTag chrI:10858101-10858181 59 3.11e-05 TAAATGCTTT AGCACACA ATCAAAGTGT chrX:8160232-8160312 19 3.11e-05 TTTCCAACGC AACACACA ATTACCTCCT chrIII:8287747-8287827 42 3.11e-05 GGGCACGCAG AGCACACA ACACATACGC chrI:6398198-6398278 54 3.11e-05 CCGCCGGGGG AGCACACA AACGGACAGC chrIV:5586456-5586536 43 3.11e-05 AGAGATGAGG Aacacaca cacacacaca chrI:12920952-12921032 14 5.85e-05 TTTAGTAGTA CACACACA TTCAATTTGA chrI:13036592-13036672 9 5.85e-05 GTTTTTGC CACACACA ACCCACCCAG chrIV:5582392-5582472 12 5.85e-05 gacgagagac cacacaca tatacaaaca chrV:14368491-14368571 51 5.85e-05 CTGACTGACA CACACACA CACACGTTCT chrIII:10367567-10367647 30 5.85e-05 TGCTACCACA CACACACA CATTGCTCTC chrIV:15561434-15561514 16 9.08e-05 TTTTTAATTA AACAGACA GAGAGACAAA chrI:8580258-8580338 61 9.08e-05 AGAGAAGGAA AACAGACA GAAGCACAAG chrX:5653913-5653993 64 9.08e-05 TGCCATGGGC AGCAGACA GCAAAAAAA chrI:12571910-12571990 23 1.55e-04 CGAGTCGTGG AGCACACG AAGCACAACA chrX:16040394-16040474 54 1.55e-04 CGGAACGCAG AAAACACA GGCAGCGAAA chrIV:6751363-6751443 68 1.55e-04 AGAAGGACCT AGAACACA TGCAC chrI:14939884-14939964 39 1.55e-04 AAGAGAAGAA AGCACACG GCGAAGAAGA chrII:6782883-6782963 35 1.55e-04 GAAAAACTAA AAAACACA GCCTGTTGCC chrIII:11834322-11834402 14 1.55e-04 GAGGGCACAG AGAACACA CTTGCACTAT chrV:6350309-6350389 47 1.55e-04 GGCGTCGTTG AACACACG ACGCCGCTGT chrI:8013465-8013545 8 1.55e-04 CACACGC AAAACACA TGGCATATTT chrI:14936700-14936780 40 2.06e-04 GAGCGACAGG AGCACAAA AAGCAACTCG chrV:8435488-8435568 60 2.06e-04 CAGAGAAAAG AGCACAAA TGTCTCTTTC chrV:7759436-7759516 37 2.06e-04 CAACAACATC AACACAAA TTGTTGTGTC chrIV:2603858-2603938 30 2.34e-04 ATAGAAGAGA CGCAGACA CACCTACTCT chrX:8806521-8806601 30 2.34e-04 AGAGGGGAGG CGCAGACA GGAAAATAAA chrIV:2993401-2993481 14 3.05e-04 TCCGTCCACA ACCACACA TTTGCTTCAG chrV:9545379-9545459 21 3.05e-04 AATACGCATG CGCACACG CGCCCGCCTC chrII:7887475-7887555 33 3.19e-04 CGTCTCATCG CTCACACA ATTTCTCGGG chrIII:764538-764618 50 3.19e-04 AGTGTCTCCC CTCACACA ACCGGGAAAG chrI:9014057-9014137 59 3.50e-04 CGCACCGTCA CGCACAAA TGCACAGAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARCACACA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:14016871-14016951 3.1e-05 24_[+4]_48 chrIV:15017046-15017126 3.1e-05 25_[+4]_47 chrX:17670511-17670591 3.1e-05 48_[+4]_24 chrIII:11981695-11981775 3.1e-05 16_[+4]_56 chrI:14764936-14765016 3.1e-05 23_[+4]_49 chrI:10858101-10858181 3.1e-05 58_[+4]_14 chrX:8160232-8160312 3.1e-05 18_[+4]_54 chrIII:8287747-8287827 3.1e-05 41_[+4]_31 chrI:6398198-6398278 3.1e-05 53_[+4]_19 chrIV:5586456-5586536 3.1e-05 42_[+4]_30 chrI:12920952-12921032 5.9e-05 13_[+4]_59 chrI:13036592-13036672 5.9e-05 8_[+4]_64 chrIV:5582392-5582472 5.9e-05 11_[+4]_61 chrV:14368491-14368571 5.9e-05 50_[+4]_22 chrIII:10367567-10367647 5.9e-05 29_[+4]_43 chrIV:15561434-15561514 9.1e-05 15_[+4]_57 chrI:8580258-8580338 9.1e-05 60_[+4]_12 chrX:5653913-5653993 9.1e-05 63_[+4]_9 chrI:12571910-12571990 0.00015 22_[+4]_50 chrX:16040394-16040474 0.00015 53_[+4]_19 chrIV:6751363-6751443 0.00015 67_[+4]_5 chrI:14939884-14939964 0.00015 38_[+4]_34 chrII:6782883-6782963 0.00015 34_[+4]_38 chrIII:11834322-11834402 0.00015 13_[+4]_59 chrV:6350309-6350389 0.00015 46_[+4]_26 chrI:8013465-8013545 0.00015 7_[+4]_65 chrI:14936700-14936780 0.00021 39_[+4]_33 chrV:8435488-8435568 0.00021 59_[+4]_13 chrV:7759436-7759516 0.00021 36_[+4]_36 chrIV:2603858-2603938 0.00023 29_[+4]_43 chrX:8806521-8806601 0.00023 29_[+4]_43 chrIV:2993401-2993481 0.0003 13_[+4]_59 chrV:9545379-9545459 0.0003 20_[+4]_52 chrII:7887475-7887555 0.00032 32_[+4]_40 chrIII:764538-764618 0.00032 49_[+4]_23 chrI:9014057-9014137 0.00035 58_[+4]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARCACACA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ARCACACA width=8 seqs=36 chrX:14016871-14016951 ( 25) AACACACA 1 chrIV:15017046-15017126 ( 26) AACACACA 1 chrX:17670511-17670591 ( 49) AACACACA 1 chrIII:11981695-11981775 ( 17) AGCACACA 1 chrI:14764936-14765016 ( 24) AGCACACA 1 chrI:10858101-10858181 ( 59) AGCACACA 1 chrX:8160232-8160312 ( 19) AACACACA 1 chrIII:8287747-8287827 ( 42) AGCACACA 1 chrI:6398198-6398278 ( 54) AGCACACA 1 chrIV:5586456-5586536 ( 43) AACACACA 1 chrI:12920952-12921032 ( 14) CACACACA 1 chrI:13036592-13036672 ( 9) CACACACA 1 chrIV:5582392-5582472 ( 12) CACACACA 1 chrV:14368491-14368571 ( 51) CACACACA 1 chrIII:10367567-10367647 ( 30) CACACACA 1 chrIV:15561434-15561514 ( 16) AACAGACA 1 chrI:8580258-8580338 ( 61) AACAGACA 1 chrX:5653913-5653993 ( 64) AGCAGACA 1 chrI:12571910-12571990 ( 23) AGCACACG 1 chrX:16040394-16040474 ( 54) AAAACACA 1 chrIV:6751363-6751443 ( 68) AGAACACA 1 chrI:14939884-14939964 ( 39) AGCACACG 1 chrII:6782883-6782963 ( 35) AAAACACA 1 chrIII:11834322-11834402 ( 14) AGAACACA 1 chrV:6350309-6350389 ( 47) AACACACG 1 chrI:8013465-8013545 ( 8) AAAACACA 1 chrI:14936700-14936780 ( 40) AGCACAAA 1 chrV:8435488-8435568 ( 60) AGCACAAA 1 chrV:7759436-7759516 ( 37) AACACAAA 1 chrIV:2603858-2603938 ( 30) CGCAGACA 1 chrX:8806521-8806601 ( 30) CGCAGACA 1 chrIV:2993401-2993481 ( 14) ACCACACA 1 chrV:9545379-9545459 ( 21) CGCACACG 1 chrII:7887475-7887555 ( 33) CTCACACA 1 chrIII:764538-764618 ( 50) CTCACACA 1 chrI:9014057-9014137 ( 59) CGCACAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARCACACA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.389 E= 1.2e+003 139 39 -1181 -1181 84 -306 88 -223 -93 189 -1181 -1181 192 -1181 -1181 -1181 -1181 189 -80 -1181 192 -1181 -1181 -1181 -125 193 -1181 -1181 175 -1181 -112 -1181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARCACACA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 1.2e+003 0.694444 0.305556 0.000000 0.000000 0.472222 0.027778 0.444444 0.055556 0.138889 0.861111 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.861111 0.138889 0.000000 1.000000 0.000000 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 0.888889 0.000000 0.111111 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ARCACACA MEME-4 regular expression -------------------------------------------------------------------------------- [AC][AG]CACACA -------------------------------------------------------------------------------- Time 18.50 secs. ******************************************************************************** ******************************************************************************** MOTIF GAARARGA MEME-5 width = 8 sites = 40 llr = 322 E-value = 1.9e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAARARGA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :774a5:a pos.-specific C :::::1:: probability G a337:5a: matrix T :::::::: bits 2.1 * * 1.9 * ** 1.7 * * ** 1.5 * * ** Relative 1.3 * * ** Entropy 1.1 ***** ** (11.6 bits) 0.8 ***** ** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAAGAAGA consensus GGA G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAARARGA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:14640024-14640104 37 1.67e-05 AAAAAAAGAA GAAGAGGA GATTTGCTTT chrIII:5688404-5688484 68 1.67e-05 aaagacgtaa gaagagga gCGTA chrI:8307653-8307733 68 1.67e-05 CACAGCAGCC GAAGAGGA GTAAA chrV:9561888-9561968 50 1.67e-05 GAaaaaaaaa gaagagga tgaagaagaa chrV:12819274-12819354 8 1.67e-05 ATAGGGA GAAGAGGA GGACGAAGCA chrI:2580230-2580310 15 3.48e-05 aaaaaaaaaa gaagaaga GGGGGTGGAG chrV:11638853-11638933 56 3.48e-05 AGAAATACTA GAAGAAGA AGAGAGAAAG chrI:14939884-14939964 49 3.48e-05 AGCACACGGC GAAGAAGA CGTTGAAGTA chrV:6341329-6341409 39 3.48e-05 cgtcgagaaa gaagaaga aaaaaaacga chrII:4456140-4456220 48 3.48e-05 CAGGACCATA GAAGAAGA AGCCAGTAGT chrX:8017428-8017508 73 3.48e-05 aagagtagga gaagaaga chrI:7662204-7662284 13 6.54e-05 AAAGAATGAG GAGGAGGA GGATGAAGCC chrIII:7723820-7723900 56 6.54e-05 ACTGGTGTGG GAGGAGGA CGTGGAACGA chrX:16129038-16129118 6 6.54e-05 AGAAA GAGGAGGA GAAGGCCGAG chrII:4094635-4094715 39 6.54e-05 agtactgtag gaggagga attttcggtt chrV:18868688-18868768 60 1.17e-04 CGCGAACAAG GAAAAGGA GACGAAAAAA chrIV:6751363-6751443 22 1.17e-04 CTAAGTCATT GGAGAAGA TCAGCAAAGA chrI:8580258-8580338 41 1.17e-04 GTTTGAAGCG GAAAAGGA GAAGAGAAGG chrV:5963838-5963918 25 1.17e-04 CAGACGTTAT GGAGAAGA GACGCAGCGT chrIV:10819042-10819122 68 1.17e-04 GCGGCAGGAG GGAGAAGA AAACG chrV:10041559-10041639 31 1.17e-04 GGTTTGTGTC GAAAAGGA GGCAAAAAGA chrIV:16658835-16658915 73 1.17e-04 AAAATAACTG GAAAAGGA chrX:8806521-8806601 4 1.17e-04 TCT GAAAAGGA GCGAACAGAG chrIII:5755363-5755443 54 1.17e-04 gagagagaga gagGAAGA GATGAGGAGA chrX:4142601-4142681 42 1.37e-04 AAAGAAAAAC GAAAAAGA GTCATCGTTG chrIII:11738636-11738716 24 1.51e-04 TGCAGAAATT GGGGAGGA GGCGGTCAGA chrIV:13118992-13119072 69 1.51e-04 TCTGAAGAGG GGGGAGGA GAAG chrIV:15017046-15017126 39 2.15e-04 ACACAGACGA GGGGAAGA AGCTTCTTCC chrIV:15561434-15561514 68 2.15e-04 AAGAGAAAAG GGGGAAGA AACGG chrI:8312646-8312726 38 2.15e-04 CTTGCACAAA GAAGACGA CAAAAAAGAA chrII:7325308-7325388 72 2.15e-04 TATACGAGTA GAAGACGA A chrIV:11744387-11744467 47 2.15e-04 ACGTACAATT GGAAAGGA ACGTCTATCT chrX:16202323-16202403 21 2.52e-04 ATTGAGAGGG GGAAAAGA GCTCTTGGAG chrX:14636838-14636918 2 2.52e-04 G GGAAAAGA GCAACGACGA chrI:5140419-5140499 65 2.52e-04 TCAACATGGA GAGAAAGA CGGAGAGA chrIV:2998651-2998731 30 3.31e-04 GAAAGGCAGT GAAAACGA GGGAAAGCAG chrIII:764538-764618 61 3.31e-04 TCACACAACC GGGAAAGA CGACCAGAAA chrV:20793939-20794019 5 3.31e-04 GAGC GGGAAAGA GTGTCTGAAA chrII:9281803-9281883 23 3.31e-04 AAAGAAAAAA GAAAACGA ACTCTTAGAG chrII:5276891-5276971 65 4.06e-04 AAAGTGAGAA GAAGGGGA GAGtggaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAARARGA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:14640024-14640104 1.7e-05 36_[+5]_36 chrIII:5688404-5688484 1.7e-05 67_[+5]_5 chrI:8307653-8307733 1.7e-05 67_[+5]_5 chrV:9561888-9561968 1.7e-05 49_[+5]_23 chrV:12819274-12819354 1.7e-05 7_[+5]_65 chrI:2580230-2580310 3.5e-05 14_[+5]_58 chrV:11638853-11638933 3.5e-05 55_[+5]_17 chrI:14939884-14939964 3.5e-05 48_[+5]_24 chrV:6341329-6341409 3.5e-05 38_[+5]_34 chrII:4456140-4456220 3.5e-05 47_[+5]_25 chrX:8017428-8017508 3.5e-05 72_[+5] chrI:7662204-7662284 6.5e-05 12_[+5]_60 chrIII:7723820-7723900 6.5e-05 55_[+5]_17 chrX:16129038-16129118 6.5e-05 5_[+5]_67 chrII:4094635-4094715 6.5e-05 38_[+5]_34 chrV:18868688-18868768 0.00012 59_[+5]_13 chrIV:6751363-6751443 0.00012 21_[+5]_51 chrI:8580258-8580338 0.00012 40_[+5]_32 chrV:5963838-5963918 0.00012 24_[+5]_48 chrIV:10819042-10819122 0.00012 67_[+5]_5 chrV:10041559-10041639 0.00012 30_[+5]_42 chrIV:16658835-16658915 0.00012 72_[+5] chrX:8806521-8806601 0.00012 3_[+5]_69 chrIII:5755363-5755443 0.00012 53_[+5]_19 chrX:4142601-4142681 0.00014 41_[+5]_31 chrIII:11738636-11738716 0.00015 23_[+5]_49 chrIV:13118992-13119072 0.00015 68_[+5]_4 chrIV:15017046-15017126 0.00022 38_[+5]_34 chrIV:15561434-15561514 0.00022 67_[+5]_5 chrI:8312646-8312726 0.00022 37_[+5]_35 chrII:7325308-7325388 0.00022 71_[+5]_1 chrIV:11744387-11744467 0.00022 46_[+5]_26 chrX:16202323-16202403 0.00025 20_[+5]_52 chrX:14636838-14636918 0.00025 1_[+5]_71 chrI:5140419-5140499 0.00025 64_[+5]_8 chrIV:2998651-2998731 0.00033 29_[+5]_43 chrIII:764538-764618 0.00033 60_[+5]_12 chrV:20793939-20794019 0.00033 4_[+5]_68 chrII:9281803-9281883 0.00033 22_[+5]_50 chrII:5276891-5276971 0.00041 64_[+5]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAARARGA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAARARGA width=8 seqs=40 chrX:14640024-14640104 ( 37) GAAGAGGA 1 chrIII:5688404-5688484 ( 68) GAAGAGGA 1 chrI:8307653-8307733 ( 68) GAAGAGGA 1 chrV:9561888-9561968 ( 50) GAAGAGGA 1 chrV:12819274-12819354 ( 8) GAAGAGGA 1 chrI:2580230-2580310 ( 15) GAAGAAGA 1 chrV:11638853-11638933 ( 56) GAAGAAGA 1 chrI:14939884-14939964 ( 49) GAAGAAGA 1 chrV:6341329-6341409 ( 39) GAAGAAGA 1 chrII:4456140-4456220 ( 48) GAAGAAGA 1 chrX:8017428-8017508 ( 73) GAAGAAGA 1 chrI:7662204-7662284 ( 13) GAGGAGGA 1 chrIII:7723820-7723900 ( 56) GAGGAGGA 1 chrX:16129038-16129118 ( 6) GAGGAGGA 1 chrII:4094635-4094715 ( 39) GAGGAGGA 1 chrV:18868688-18868768 ( 60) GAAAAGGA 1 chrIV:6751363-6751443 ( 22) GGAGAAGA 1 chrI:8580258-8580338 ( 41) GAAAAGGA 1 chrV:5963838-5963918 ( 25) GGAGAAGA 1 chrIV:10819042-10819122 ( 68) GGAGAAGA 1 chrV:10041559-10041639 ( 31) GAAAAGGA 1 chrIV:16658835-16658915 ( 73) GAAAAGGA 1 chrX:8806521-8806601 ( 4) GAAAAGGA 1 chrIII:5755363-5755443 ( 54) GAGGAAGA 1 chrX:4142601-4142681 ( 42) GAAAAAGA 1 chrIII:11738636-11738716 ( 24) GGGGAGGA 1 chrIV:13118992-13119072 ( 69) GGGGAGGA 1 chrIV:15017046-15017126 ( 39) GGGGAAGA 1 chrIV:15561434-15561514 ( 68) GGGGAAGA 1 chrI:8312646-8312726 ( 38) GAAGACGA 1 chrII:7325308-7325388 ( 72) GAAGACGA 1 chrIV:11744387-11744467 ( 47) GGAAAGGA 1 chrX:16202323-16202403 ( 21) GGAAAAGA 1 chrX:14636838-14636918 ( 2) GGAAAAGA 1 chrI:5140419-5140499 ( 65) GAGAAAGA 1 chrIV:2998651-2998731 ( 30) GAAAACGA 1 chrIII:764538-764618 ( 61) GGGAAAGA 1 chrV:20793939-20794019 ( 5) GGGAAAGA 1 chrII:9281803-9281883 ( 23) GAAAACGA 1 chrII:5276891-5276971 ( 65) GAAGGGGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAARARGA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.3065 E= 1.9e-001 -1197 -1197 205 -1197 140 -1197 31 -1197 140 -1197 31 -1197 40 -1197 143 -1197 188 -1197 -327 -1197 77 -122 90 -1197 -1197 -1197 205 -1197 192 -1197 -1197 -1197 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAARARGA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 40 E= 1.9e-001 0.000000 0.000000 1.000000 0.000000 0.700000 0.000000 0.300000 0.000000 0.700000 0.000000 0.300000 0.000000 0.350000 0.000000 0.650000 0.000000 0.975000 0.000000 0.025000 0.000000 0.450000 0.100000 0.450000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAARARGA MEME-5 regular expression -------------------------------------------------------------------------------- G[AG][AG][GA]A[AG]GA -------------------------------------------------------------------------------- Time 21.88 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:4092677-4092757 9.86e-01 80 chrII:4094432-4094512 9.96e-01 80 chrI:9322551-9322631 9.93e-01 80 chrX:10656775-10656855 1.67e-01 80 chrV:14948744-14948824 2.32e-01 80 chrII:4094635-4094715 1.86e-01 38_[+5(6.54e-05)]_34 chrIV:12584279-12584359 7.12e-01 80 chrIV:11744387-11744467 6.64e-03 61_[+1(6.15e-05)]_11 chrV:10722120-10722200 2.18e-02 28_[+2(5.96e-05)]_44 chrIII:10151890-10151970 2.58e-01 80 chrII:7325308-7325388 4.11e-02 80 chrV:19001135-19001215 4.18e-01 80 chrIV:5586456-5586536 1.92e-05 42_[+4(3.11e-05)]_[+4(5.85e-05)]_9_\ [+3(1.59e-05)]_5 chrI:12966551-12966631 5.82e-01 80 chrX:13147319-13147399 1.41e-01 80 chrIII:3984199-3984279 2.52e-02 16_[+2(5.96e-05)]_56 chrII:9281803-9281883 7.94e-04 13_[+2(4.15e-05)]_22_[+2(5.96e-05)]_\ 29 chrIV:12365102-12365182 4.27e-01 64_[+1(9.79e-05)]_8 chrX:15342327-15342407 6.25e-01 80 chrIII:9702833-9702913 6.57e-01 80 chrIII:3898945-3899025 1.26e-01 3_[+1(9.79e-05)]_69 chrV:18490595-18490675 5.38e-02 80 chrV:20793939-20794019 6.84e-03 80 chrIII:4658491-4658571 9.83e-02 80 chrX:5983033-5983113 3.29e-01 80 chrX:8952146-8952226 6.85e-02 80 chrV:6342621-6342701 2.76e-03 9_[+3(1.59e-05)]_[+3(6.28e-05)]_55 chrX:4899774-4899854 6.58e-02 80 chrX:16129038-16129118 1.31e-03 5_[+5(6.54e-05)]_12_[+2(7.95e-05)]_\ 47 chrI:8312646-8312726 1.50e-02 80 chrX:4137930-4138010 3.78e-01 80 chrX:12186221-12186301 1.64e-01 80 chrI:8013465-8013545 1.12e-02 44_[+1(6.15e-05)]_28 chrIII:5755363-5755443 4.25e-02 80 chrIII:4379186-4379266 9.66e-02 80 chrX:7217856-7217936 2.17e-01 80 chrX:2321949-2322029 5.85e-01 80 chrI:12548100-12548180 2.61e-03 62_[+2(7.95e-05)]_10 chrX:9668693-9668773 5.58e-03 25_[+3(6.28e-05)]_47 chrIII:3864223-3864303 7.28e-01 80 chrX:8017428-8017508 1.49e-02 72_[+5(3.48e-05)] chrIII:7724586-7724666 1.97e-02 70_[+1(3.25e-05)]_2 chrI:9598354-9598434 1.64e-03 80 chrX:8806521-8806601 1.30e-04 50_[+3(6.28e-05)]_22 chrX:7218060-7218140 1.18e-02 80 chrI:3627108-3627188 7.54e-01 80 chrI:9092466-9092546 1.16e-01 20_[+1(6.15e-05)]_[+1(6.15e-05)]_11_\ [+1(3.25e-05)]_25 chrX:13739544-13739624 3.85e-02 80 chrII:7319698-7319778 4.19e-01 80 chrII:9606784-9606864 4.28e-01 31_[+1(9.79e-05)]_41 chrX:5140299-5140379 9.17e-02 80 chrI:6398198-6398278 2.31e-03 53_[+4(3.11e-05)]_19 chrII:13196867-13196947 3.78e-03 80 chrIV:7391625-7391705 6.23e-01 80 chrIV:16658835-16658915 3.84e-03 53_[+2(7.95e-05)]_19 chrX:8257833-8257913 2.47e-01 80 chrIV:13118992-13119072 1.17e-01 80 chrIII:10367567-10367647 6.17e-02 25_[+4(5.85e-05)]_47 chrII:15044000-15044080 6.31e-02 80 chrIII:13724591-13724671 3.03e-01 80 chrI:10765678-10765758 4.41e-01 80 chrX:17519656-17519736 7.78e-02 28_[+1(3.25e-05)]_44 chrII:8744649-8744729 1.47e-01 66_[+3(6.28e-05)]_6 chrV:10246501-10246581 1.12e-01 80 chrV:12819274-12819354 2.85e-03 7_[+5(1.67e-05)]_65 chrIII:11185680-11185760 1.03e-02 80 chrIV:3135126-3135206 2.64e-02 80 chrX:5201981-5202061 4.87e-01 80 chrV:6030568-6030648 6.28e-02 80 chrV:6350309-6350389 8.86e-02 80 chrIV:7149345-7149425 5.26e-01 80 chrX:7284922-7285002 3.38e-01 80 chrII:4456140-4456220 2.36e-02 47_[+5(3.48e-05)]_25 chrV:6341329-6341409 3.67e-04 16_[+2(1.98e-05)]_14_[+5(3.48e-05)]_\ 34 chrIV:5598803-5598883 1.48e-02 25_[+3(3.12e-05)]_47 chrIV:5588484-5588564 1.92e-03 5_[+2(4.15e-05)]_67 chrIV:14618679-14618759 1.15e-01 80 chrV:7804287-7804367 2.46e-02 80 chrX:11469793-11469873 3.50e-02 59_[+3(1.59e-05)]_[+3(1.59e-05)]_5 chrIII:5950034-5950114 5.40e-01 80 chrIII:6140088-6140168 1.45e-01 80 chrIII:8287747-8287827 8.46e-03 41_[+4(3.11e-05)]_31 chrI:12549925-12550005 2.82e-01 80 chrIV:12583363-12583443 5.99e-01 80 chrV:10041559-10041639 2.70e-06 56_[+3(1.59e-05)]_16 chrI:5140419-5140499 3.17e-02 18_[+2(5.96e-05)]_36_[+2(5.96e-05)]_\ 10 chrV:1943642-1943722 5.56e-01 80 chrII:8796584-8796664 1.05e-01 80 chrII:9013442-9013522 3.61e-01 80 chrIII:2535381-2535461 9.32e-01 80 chrV:14368491-14368571 5.73e-03 [+1(3.25e-05)]_40_[+4(5.85e-05)]_24 chrX:5653913-5653993 2.39e-02 63_[+4(9.08e-05)]_9 chrI:4917720-4917800 1.02e-01 41_[+1(6.15e-05)]_31 chrII:8131499-8131579 5.28e-01 80 chrX:8160232-8160312 1.02e-01 18_[+4(3.11e-05)]_54 chrX:10654723-10654803 8.04e-02 50_[+3(9.42e-05)]_22 chrV:20417938-20418018 1.62e-01 44_[+1(6.15e-05)]_[+1(6.15e-05)]_20 chrX:13768659-13768739 7.65e-01 80 chrIV:5582392-5582472 3.11e-03 11_[+4(5.85e-05)]_61 chrX:6571236-6571316 1.77e-01 80 chrI:10858101-10858181 3.72e-02 58_[+4(3.11e-05)]_14 chrIII:11834322-11834402 8.37e-03 80 chrV:10719259-10719339 9.56e-01 80 chrIV:10819042-10819122 6.18e-03 80 chrII:7836706-7836786 1.20e-02 3_[+1(9.79e-05)]_69 chrI:2069310-2069390 2.71e-01 80 chrV:10862014-10862094 1.11e-01 38_[+1(3.25e-05)]_5_[+1(6.15e-05)]_\ 10_[+1(9.79e-05)]_3 chrV:5963838-5963918 1.63e-03 80 chrIV:2990675-2990755 1.11e-01 80 chrIV:14260911-14260991 1.52e-02 51_[+2(4.15e-05)]_21 chrV:6043963-6044043 3.27e-01 80 chrIV:7390314-7390394 8.35e-01 80 chrV:13090445-13090525 9.73e-01 80 chrV:7759436-7759516 2.72e-02 80 chrIII:11203169-11203249 5.17e-01 80 chrIII:1785945-1786025 1.70e-02 69_[+1(3.25e-05)]_3 chrIV:8629740-8629820 9.84e-02 10_[+3(3.12e-05)]_62 chrX:4982284-4982364 2.67e-01 80 chrII:10543819-10543899 9.14e-01 80 chrX:8163727-8163807 8.58e-01 80 chrIII:7723820-7723900 7.84e-03 1_[+1(3.25e-05)]_46_[+5(6.54e-05)]_\ 17 chrX:3191623-3191703 7.22e-02 80 chrX:3822529-3822609 4.33e-02 80 chrV:8435488-8435568 1.00e-03 80 chrX:4142601-4142681 1.24e-04 32_[+2(4.15e-05)]_18_[+3(9.42e-05)]_\ 14 chrV:1481018-1481098 5.62e-01 80 chrIII:7358770-7358850 6.42e-02 46_[+1(3.25e-05)]_26 chrV:8130269-8130349 9.11e-02 40_[+1(3.25e-05)]_32 chrI:14764936-14765016 1.02e-04 23_[+4(3.11e-05)]_49 chrI:8302135-8302215 3.84e-02 80 chrI:9604529-9604609 5.86e-01 80 chrV:11921456-11921536 1.74e-01 54_[+1(6.15e-05)]_18 chrV:18638542-18638622 9.87e-01 80 chrIII:6655930-6656010 1.40e-03 5_[+1(3.25e-05)]_52_[+3(1.59e-05)]_\ 7 chrIV:15696943-15697023 1.09e-01 24_[+1(9.79e-05)]_48 chrIII:13716341-13716421 7.75e-02 80 chrV:8802240-8802320 8.50e-03 80 chrIV:2603858-2603938 5.18e-02 80 chrI:3829800-3829880 4.07e-01 80 chrI:7548357-7548437 2.03e-01 1_[+4(5.85e-05)]_[+4(5.85e-05)]_2_\ [+4(3.11e-05)]_5_[+4(5.85e-05)]_9_[+4(5.85e-05)]_10_[+4(5.85e-05)]_5 chrIII:764538-764618 2.94e-04 80 chrX:2089606-2089686 8.69e-01 80 chrX:15653406-15653486 1.44e-01 [+3(1.59e-05)]_[+3(1.59e-05)]_\ [+3(1.59e-05)]_[+3(1.59e-05)]_18_[+3(9.42e-05)]_22 chrIV:11793336-11793416 8.32e-01 80 chrV:14835287-14835367 8.16e-03 80 chrI:10777480-10777560 1.16e-02 80 chrX:7327243-7327323 8.78e-02 80 chrIII:5685643-5685723 4.26e-02 80 chrI:9500922-9501002 3.44e-02 80 chrX:3711862-3711942 9.63e-01 80 chrX:14636838-14636918 1.67e-01 80 chrV:16352423-16352503 1.59e-02 17_[+1(3.25e-05)]_55 chrIII:11981695-11981775 8.06e-04 16_[+4(3.11e-05)]_29_[+3(3.12e-05)]_\ 19 chrII:2987287-2987367 9.68e-01 80 chrIII:9827663-9827743 9.90e-04 1_[+2(1.98e-05)]_71 chrX:16202323-16202403 4.31e-02 80 chrI:9014057-9014137 4.67e-01 80 chrIII:8355217-8355297 5.11e-02 13_[+2(1.98e-05)]_59 chrX:5976758-5976838 2.75e-01 80 chrI:13351053-13351133 1.27e-01 2_[+1(3.25e-05)]_[+1(6.15e-05)]_62 chrV:18627587-18627667 2.83e-02 42_[+2(4.15e-05)]_30 chrII:11305864-11305944 4.10e-01 80 chrIII:10819888-10819968 2.81e-01 80 chrI:8580258-8580338 1.88e-03 60_[+4(9.08e-05)]_12 chrIII:8785617-8785697 1.12e-01 80 chrII:7325513-7325593 2.08e-01 80 chrI:13036592-13036672 1.26e-03 8_[+4(5.85e-05)]_64 chrIV:2998651-2998731 6.69e-02 80 chrII:5276891-5276971 6.77e-03 35_[+2(7.95e-05)]_37 chrIV:10500152-10500232 8.13e-02 80 chrII:6782883-6782963 1.95e-03 70_[+1(6.15e-05)]_2 chrI:12905941-12906021 8.87e-01 80 chrIV:3874663-3874743 1.39e-01 37_[+1(9.79e-05)]_35 chrII:7887475-7887555 7.45e-03 80 chrIV:4026139-4026219 1.77e-01 80 chrX:15705042-15705122 3.85e-01 80 chrX:14557513-14557593 1.38e-01 14_[+3(1.59e-05)]_58 chrI:9849582-9849662 2.72e-01 80 chrX:16131223-16131303 1.89e-01 80 chrV:20714160-20714240 1.92e-01 80 chrX:3839475-3839555 3.80e-01 80 chrIII:67201-67281 4.12e-01 80 chrV:4499359-4499439 1.39e-03 [+1(3.25e-05)]_72 chrIII:9905538-9905618 5.24e-02 67_[+2(4.15e-05)]_5 chrV:9561888-9561968 8.77e-04 49_[+5(1.67e-05)]_1_[+5(3.48e-05)]_\ 14 chrIII:6988310-6988390 2.99e-02 45_[+3(1.59e-05)]_27 chrX:17670511-17670591 1.53e-04 48_[+4(3.11e-05)]_24 chrI:14939884-14939964 2.20e-05 15_[+1(9.79e-05)]_25_[+5(3.48e-05)]_\ 24 chrX:10656975-10657055 2.39e-02 40_[+2(4.15e-05)]_32 chrIV:6879066-6879146 6.81e-02 3_[+1(9.79e-05)]_69 chrV:5628297-5628377 2.48e-01 80 chrIII:5999801-5999881 4.16e-01 80 chrII:9970840-9970920 4.67e-02 14_[+3(6.28e-05)]_58 chrI:14936700-14936780 1.22e-01 80 chrIII:11738636-11738716 1.10e-01 80 chrIII:8201847-8201927 1.64e-02 50_[+2(1.98e-05)]_22 chrX:1022049-1022129 8.32e-01 80 chrII:8478951-8479031 7.55e-01 80 chrV:9545379-9545459 6.77e-03 50_[+1(3.25e-05)]_22 chrI:12920952-12921032 9.22e-03 13_[+4(5.85e-05)]_59 chrIII:12843009-12843089 8.49e-01 80 chrIV:2993401-2993481 4.24e-01 80 chrX:7234994-7235074 1.26e-02 80 chrX:8016049-8016129 1.79e-01 80 chrI:14346762-14346842 2.22e-03 21_[+2(7.95e-05)]_26_[+1(6.15e-05)]_\ 17 chrI:6810466-6810546 7.32e-01 80 chrX:15345812-15345892 8.68e-01 80 chrIV:9928608-9928688 1.01e-01 8_[+1(3.25e-05)]_64 chrIV:6751363-6751443 2.37e-03 80 chrX:15395755-15395835 2.59e-01 80 chrI:7307156-7307236 9.25e-01 80 chrX:2604800-2604880 8.20e-01 80 chrI:8307653-8307733 3.83e-02 67_[+5(1.67e-05)]_5 chrI:4035435-4035515 5.41e-02 80 chrIV:5548954-5549034 6.25e-01 80 chrIII:9662695-9662775 3.82e-02 29_[+1(3.25e-05)]_43 chrIII:10284382-10284462 2.27e-01 80 chrX:2288168-2288248 6.02e-01 80 chrI:13411511-13411591 1.13e-01 80 chrV:18868688-18868768 3.91e-03 80 chrV:11638853-11638933 2.96e-06 [+3(1.59e-05)]_47_[+5(3.48e-05)]_1_\ [+2(5.96e-05)]_8 chrIV:15561434-15561514 2.64e-04 15_[+4(9.08e-05)]_34_[+2(1.98e-05)]_\ 15 chrV:10677718-10677798 9.50e-03 16_[+1(3.25e-05)]_56 chrI:2580230-2580310 7.53e-05 14_[+5(3.48e-05)]_7_[+2(5.96e-05)]_\ 43 chrII:6683818-6683898 4.99e-01 80 chrV:4694724-4694804 5.81e-01 80 chrI:6092718-6092798 4.39e-02 80 chrIV:15017046-15017126 1.35e-04 25_[+4(3.11e-05)]_27_[+1(9.79e-05)]_\ 12 chrII:13674006-13674086 9.66e-01 80 chrIV:5103464-5103544 2.08e-03 43_[+1(3.25e-05)]_29 chrV:20710616-20710696 1.78e-01 80 chrX:3956838-3956918 1.65e-01 80 chrIII:10153106-10153186 3.48e-02 80 chrV:2068108-2068188 1.24e-01 52_[+1(3.25e-05)]_20 chrIV:8796297-8796377 4.64e-02 80 chrIV:4215560-4215640 8.80e-03 80 chrX:14016871-14016951 3.33e-02 24_[+4(3.11e-05)]_48 chrX:16040394-16040474 2.40e-04 [+3(1.59e-05)]_72 chrII:6891375-6891455 4.35e-01 80 chrX:7478625-7478705 4.30e-03 34_[+3(1.59e-05)]_13_[+1(3.25e-05)]_\ 17 chrIII:5688404-5688484 5.71e-06 10_[+3(1.59e-05)]_49_[+5(1.67e-05)]_\ 5 chrI:12571910-12571990 2.92e-02 80 chrX:13366012-13366092 9.71e-01 80 chrV:18658801-18658881 1.00e+00 80 chrX:14640024-14640104 1.39e-04 36_[+5(1.67e-05)]_36 chrII:7327142-7327222 2.11e-01 80 chrX:1395952-1396032 9.77e-01 80 chrI:7662204-7662284 2.21e-03 9_[+5(6.54e-05)]_25_[+2(4.15e-05)]_\ 30 chrII:10558691-10558771 1.47e-02 13_[+2(1.98e-05)]_59 chrIV:6806758-6806838 1.72e-01 10_[+1(3.25e-05)]_62 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************