******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/F10E7.11.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrII:7113347-7113427 1.0000 80 chrIII:12607494-12607574 1.0000 80 chrIII:10325127-10325207 1.0000 80 chrII:7105843-7105923 1.0000 80 chrV:6015689-6015769 1.0000 80 chrI:3909868-3909948 1.0000 80 chrI:5697186-5697266 1.0000 80 chrV:10238204-10238284 1.0000 80 chrV:5841408-5841488 1.0000 80 chrIV:9318363-9318443 1.0000 80 chrV:7437624-7437704 1.0000 80 chrV:10343005-10343085 1.0000 80 chrI:7239103-7239183 1.0000 80 chrII:9617582-9617662 1.0000 80 chrIV:11146234-11146314 1.0000 80 chrI:11163151-11163231 1.0000 80 chrX:2731495-2731575 1.0000 80 chrII:10247319-10247399 1.0000 80 chrIV:11146033-11146113 1.0000 80 chrIV:5946630-5946710 1.0000 80 chrI:10179147-10179227 1.0000 80 chrIV:5374898-5374978 1.0000 80 chrIII:8685973-8686053 1.0000 80 chrII:7319674-7319754 1.0000 80 chrV:3132255-3132335 1.0000 80 chrIII:4172343-4172423 1.0000 80 chrIII:7101922-7102002 1.0000 80 chrI:3293908-3293988 1.0000 80 chrIII:8449416-8449496 1.0000 80 chrIV:6326061-6326141 1.0000 80 chrI:10085670-10085750 1.0000 80 chrIII:1625866-1625946 1.0000 80 chrV:5592041-5592121 1.0000 80 chrV:13669359-13669439 1.0000 80 chrII:4911646-4911726 1.0000 80 chrI:8612480-8612560 1.0000 80 chrIV:14658247-14658327 1.0000 80 chrI:7238841-7238921 1.0000 80 chrII:10393563-10393643 1.0000 80 chrIII:11091110-11091190 1.0000 80 chrI:13953306-13953386 1.0000 80 chrIV:7043620-7043700 1.0000 80 chrII:11917766-11917846 1.0000 80 chrI:12861788-12861868 1.0000 80 chrIV:13398854-13398934 1.0000 80 chrI:112451-112531 1.0000 80 chrX:6522960-6523040 1.0000 80 chrII:11237179-11237259 1.0000 80 chrV:14828564-14828644 1.0000 80 chrI:3826627-3826707 1.0000 80 chrIII:7495014-7495094 1.0000 80 chrV:13090580-13090660 1.0000 80 chrI:12923742-12923822 1.0000 80 chrV:11076442-11076522 1.0000 80 chrI:4920494-4920574 1.0000 80 chrI:2312441-2312521 1.0000 80 chrIV:1121688-1121768 1.0000 80 chrIII:900215-900295 1.0000 80 chrIII:7738088-7738168 1.0000 80 chrX:5845324-5845404 1.0000 80 chrII:288988-289068 1.0000 80 chrIII:1616730-1616810 1.0000 80 chrI:1157700-1157780 1.0000 80 chrIII:6462735-6462815 1.0000 80 chrIII:6195872-6195952 1.0000 80 chrI:509085-509165 1.0000 80 chrII:11880684-11880764 1.0000 80 chrI:4645477-4645557 1.0000 80 chrV:10686533-10686613 1.0000 80 chrX:7956505-7956585 1.0000 80 chrI:95045-95125 1.0000 80 chrIV:2607900-2607980 1.0000 80 chrIV:3032194-3032274 1.0000 80 chrIII:2811580-2811660 1.0000 80 chrII:8698815-8698895 1.0000 80 chrIV:1711250-1711330 1.0000 80 chrII:5353816-5353896 1.0000 80 chrIII:10746415-10746495 1.0000 80 chrIV:7962203-7962283 1.0000 80 chrII:2925821-2925901 1.0000 80 chrIII:62257-62337 1.0000 80 chrI:10776416-10776496 1.0000 80 chrV:4823874-4823954 1.0000 80 chrIV:8377611-8377691 1.0000 80 chrII:4229316-4229396 1.0000 80 chrV:1158419-1158499 1.0000 80 chrI:12971843-12971923 1.0000 80 chrIV:13348790-13348870 1.0000 80 chrI:9624649-9624729 1.0000 80 chrI:7656668-7656748 1.0000 80 chrV:5667477-5667557 1.0000 80 chrI:14104609-14104689 1.0000 80 chrII:14406636-14406716 1.0000 80 chrI:13359764-13359844 1.0000 80 chrIII:13624319-13624399 1.0000 80 chrI:6094510-6094590 1.0000 80 chrV:8415253-8415333 1.0000 80 chrI:6317265-6317345 1.0000 80 chrII:14155759-14155839 1.0000 80 chrII:1323431-1323511 1.0000 80 chrII:8441630-8441710 1.0000 80 chrV:13567149-13567229 1.0000 80 chrI:9953437-9953517 1.0000 80 chrII:7111282-7111362 1.0000 80 chrIII:4015577-4015657 1.0000 80 chrI:7840274-7840354 1.0000 80 chrI:378907-378987 1.0000 80 chrIV:14822431-14822511 1.0000 80 chrV:1875672-1875752 1.0000 80 chrII:10543140-10543220 1.0000 80 chrII:4710229-4710309 1.0000 80 chrV:14688653-14688733 1.0000 80 chrV:12320546-12320626 1.0000 80 chrI:14467925-14468005 1.0000 80 chrIII:9783386-9783466 1.0000 80 chrI:12919304-12919384 1.0000 80 chrV:6326589-6326669 1.0000 80 chrII:13160627-13160707 1.0000 80 chrIII:3869626-3869706 1.0000 80 chrIV:11080881-11080961 1.0000 80 chrV:19635066-19635146 1.0000 80 chrIII:5230572-5230652 1.0000 80 chrV:8421215-8421295 1.0000 80 chrII:2794238-2794318 1.0000 80 chrX:4148353-4148433 1.0000 80 chrIV:419823-419903 1.0000 80 chrIII:13283650-13283730 1.0000 80 chrIII:5506435-5506515 1.0000 80 chrV:12024178-12024258 1.0000 80 chrIII:5169635-5169715 1.0000 80 chrIII:5853337-5853417 1.0000 80 chrIV:13510168-13510248 1.0000 80 chrIV:3131221-3131301 1.0000 80 chrII:13522278-13522358 1.0000 80 chrIII:1419991-1420071 1.0000 80 chrIII:4651853-4651933 1.0000 80 chrX:4212561-4212641 1.0000 80 chrIV:4450029-4450109 1.0000 80 chrII:14249349-14249429 1.0000 80 chrI:9514891-9514971 1.0000 80 chrII:10098444-10098524 1.0000 80 chrII:6346584-6346664 1.0000 80 chrV:10944783-10944863 1.0000 80 chrIII:13464730-13464810 1.0000 80 chrII:6890387-6890467 1.0000 80 chrII:9618723-9618803 1.0000 80 chrV:15397329-15397409 1.0000 80 chrII:11149919-11149999 1.0000 80 chrIV:4747576-4747656 1.0000 80 chrII:11966828-11966908 1.0000 80 chrV:14008492-14008572 1.0000 80 chrI:7872224-7872304 1.0000 80 chrV:13907755-13907835 1.0000 80 chrI:12654835-12654915 1.0000 80 chrX:3793581-3793661 1.0000 80 chrIV:8080070-8080150 1.0000 80 chrV:15513416-15513496 1.0000 80 chrII:6587572-6587652 1.0000 80 chrI:2069196-2069276 1.0000 80 chrIV:10737184-10737264 1.0000 80 chrIV:11854703-11854783 1.0000 80 chrI:5079694-5079774 1.0000 80 chrII:2570354-2570434 1.0000 80 chrIII:12429161-12429241 1.0000 80 chrIII:8443773-8443853 1.0000 80 chrIII:12598946-12599026 1.0000 80 chrIV:2497845-2497925 1.0000 80 chrV:9978465-9978545 1.0000 80 chrIII:9051247-9051327 1.0000 80 chrI:14718849-14718929 1.0000 80 chrIII:10214564-10214644 1.0000 80 chrV:13649969-13650049 1.0000 80 chrV:20497698-20497778 1.0000 80 chrII:15004612-15004692 1.0000 80 chrI:9787859-9787939 1.0000 80 chrII:11974835-11974915 1.0000 80 chrIII:8974902-8974982 1.0000 80 chrIV:3336790-3336870 1.0000 80 chrV:20847995-20848075 1.0000 80 chrX:13038977-13039057 1.0000 80 chrV:6431-6511 1.0000 80 chrI:8109340-8109420 1.0000 80 chrIII:5557487-5557567 1.0000 80 chrIV:7789766-7789846 1.0000 80 chrI:9420773-9420853 1.0000 80 chrV:3686131-3686211 1.0000 80 chrX:16931591-16931671 1.0000 80 chrIII:6348795-6348875 1.0000 80 chrI:3834513-3834593 1.0000 80 chrV:16744897-16744977 1.0000 80 chrIV:1708492-1708572 1.0000 80 chrII:10302739-10302819 1.0000 80 chrIV:16503724-16503804 1.0000 80 chrX:16944471-16944551 1.0000 80 chrIII:5953668-5953748 1.0000 80 chrIV:10245817-10245897 1.0000 80 chrII:14019614-14019694 1.0000 80 chrV:11122602-11122682 1.0000 80 chrV:9318207-9318287 1.0000 80 chrIV:13083090-13083170 1.0000 80 chrV:15083818-15083898 1.0000 80 chrV:15000402-15000482 1.0000 80 chrIV:5038924-5039004 1.0000 80 chrX:16618025-16618105 1.0000 80 chrII:11728601-11728681 1.0000 80 chrI:7490009-7490089 1.0000 80 chrI:7872430-7872510 1.0000 80 chrIII:9629967-9630047 1.0000 80 chrIII:4195539-4195619 1.0000 80 chrII:8939062-8939142 1.0000 80 chrV:19519741-19519821 1.0000 80 chrI:6135750-6135830 1.0000 80 chrIV:2390447-2390527 1.0000 80 chrIII:6606255-6606335 1.0000 80 chrI:461691-461771 1.0000 80 chrX:5847428-5847508 1.0000 80 chrIV:10934216-10934296 1.0000 80 chrIII:8307521-8307601 1.0000 80 chrI:7585258-7585338 1.0000 80 chrX:8381879-8381959 1.0000 80 chrV:10961506-10961586 1.0000 80 chrV:14354570-14354650 1.0000 80 chrIV:17281350-17281430 1.0000 80 chrIV:3297003-3297083 1.0000 80 chrIV:7506178-7506258 1.0000 80 chrI:7079524-7079604 1.0000 80 chrI:10569258-10569338 1.0000 80 chrX:16271294-16271374 1.0000 80 chrIV:17089007-17089087 1.0000 80 chrII:10542084-10542164 1.0000 80 chrIII:836009-836089 1.0000 80 chrII:3439398-3439478 1.0000 80 chrI:852098-852178 1.0000 80 chrI:7559853-7559933 1.0000 80 chrI:7602400-7602480 1.0000 80 chrIII:12499313-12499393 1.0000 80 chrX:6867903-6867983 1.0000 80 chrV:103108-103188 1.0000 80 chrIII:1616933-1617013 1.0000 80 chrI:13161022-13161102 1.0000 80 chrIV:11147202-11147282 1.0000 80 chrIV:15693430-15693510 1.0000 80 chrIV:2602070-2602150 1.0000 80 chrI:2878535-2878615 1.0000 80 chrX:11603279-11603359 1.0000 80 chrI:8868560-8868640 1.0000 80 chrI:10570250-10570330 1.0000 80 chrIV:13239385-13239465 1.0000 80 chrIV:11081122-11081202 1.0000 80 chrV:12870116-12870196 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_F10E7.11/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/F10E7.11.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.302 C 0.206 G 0.2 T 0.292 Background letter frequencies (from file dataset with add-one prior applied): A 0.302 C 0.206 G 0.2 T 0.292 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTTTYWRW MEME-1 width = 8 sites = 83 llr = 565 E-value = 1.6e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTYWRW MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::535 pos.-specific C ::::52:1 probability G ::::::71 matrix T aaaa53:3 bits 2.3 2.1 1.9 **** 1.6 **** Relative 1.4 **** Entropy 1.2 **** * (9.8 bits) 0.9 ***** * 0.7 ***** * 0.5 ***** * 0.2 ******** 0.0 -------- Multilevel TTTTTAGA consensus CTAT sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTYWRW MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:2878535-2878615 36 2.73e-05 GGCTCTTAAT TTTTCAGA TGGGAAACCA chrI:7602400-7602480 14 2.73e-05 TATTGATCGA TTTTCAGA GGTAGGCTAT chrIV:17281350-17281430 41 2.73e-05 TGGCAGCTTT TTTTCAGA ATCGGATATT chrV:3686131-3686211 59 2.73e-05 AAAATATATC TTTTCAGA AACTCGTCCA chrIV:2497845-2497925 19 2.73e-05 TATTGGTAAA TTTTCAGA AAATTTCAAA chrII:10098444-10098524 14 2.73e-05 ATCAATTATT TTTTCAGA AAAAGTGGCT chrI:10776416-10776496 17 2.73e-05 CAGAGAATGA TTTTCAGA TTTTTCATAT chrV:14828564-14828644 68 2.73e-05 accacgtgAG TTTTCAGA CCCGT chrII:11237179-11237259 41 2.73e-05 GGCTGCTGCT TTTTCAGA TCAACAACGT chrIII:4195539-4195619 57 6.60e-05 CCTACTTTCG TTTTTAGA AAATCGTATT chrII:10247319-10247399 65 6.60e-05 TTTTCGTTTC TTTTTAGA GTGGTAGT chrI:5697186-5697266 34 6.60e-05 TTTGTTTTCT TTTTTAGA CAGCCCCCCC chrI:5079694-5079774 70 1.11e-04 GCCTCGCCGT TTTTCCGA AGC chrI:9624649-9624729 20 1.11e-04 TCTTTAAAAT TTTTCCGA CTTCCAATTG chrX:5845324-5845404 24 1.11e-04 CCGCCTTATA TTTTCTGA GCAGTAACCT chrI:8612480-8612560 27 1.11e-04 TTTTGAAATA TTTTCTGA AATATCGTGA chrI:7872224-7872304 38 1.37e-04 AAAATTTGAT TTTTCAGT GACGTTTGAT chrIV:17089007-17089087 66 2.01e-04 ATCCACGTTT TTTTTCGA GCCGCTC chrI:7490009-7490089 14 2.01e-04 GTGATTGGCT TTTTTCGA TTCTACCTGC chrIV:13083090-13083170 62 2.01e-04 TCTTGCGCCT TTTTTCGA AAGTTGTTTG chrIV:1708492-1708572 64 2.01e-04 CCCCAATTTT TTTTTTGA ATATTCTCC chrIII:12598946-12599026 37 2.01e-04 AAAAACCAAA TTTtttga aactacagta chrV:4823874-4823954 34 2.01e-04 ACCAGTGACG TTTTTTGA TAAAAATTTG chrIV:1711250-1711330 40 2.01e-04 TGAGCTGTTG TTTTTCGA AAAAGCTTTT chrI:3826627-3826707 71 2.01e-04 agatgcgaaa tttttcga tt chrI:7238841-7238921 61 2.01e-04 TGTTCGATTT TTTTTTGA AATTGGAACA chrIV:11147202-11147282 21 2.39e-04 TAAAACCACG TTTTTAGT AATTTTATCC chrIV:3336790-3336870 64 2.39e-04 ATTCCAGACA TTTTTAGT TTTTACTCT chrII:13522278-13522358 33 2.39e-04 AGAACTgata tttttagt caaaactgca chrI:6135750-6135830 22 2.82e-04 GCTATCATTC TTTTCTGT CTTGTCAATA chrIII:9629967-9630047 59 2.82e-04 GTTTTCGTTA TTTTCCGT CTAATGTATT chrIII:13283650-13283730 8 2.82e-04 TCATGTG TTTTCTGT TCACTCACCA chrIV:11146234-11146314 16 2.82e-04 CATCCGCTGG TTTTCCGT ATTTTTCAGC chrI:7239103-7239183 13 2.82e-04 CTTGGTTGAA TTTTCTGT TCCCTTTTCT chrV:6015689-6015769 19 2.82e-04 ATTCAAATCA TTTTCTGT AGCGTGCATT chrIV:2390447-2390527 15 3.01e-04 TTTCATACCA TTTTCAGC GATTATAATT chrII:14249349-14249429 28 3.01e-04 GAGCTCTAAA TTTTCAGC CCATATCGCT chrIV:419823-419903 62 3.01e-04 TCTTGGCTGA TTTTCAGC AAATCTCGTA chrII:2794238-2794318 65 3.01e-04 AAATTTGGAA TTTTCAGC GAATTTTA chrI:7872430-7872510 16 3.63e-04 ATTTGTCTAT TTTTTCGT TAACAGCTCT chrIV:5038924-5039004 72 3.63e-04 GGTGGCTTGA TTTTTTGT T chrV:20497698-20497778 28 3.63e-04 aaatcccgca ttttttgt agatcaaacc chrIII:8443773-8443853 71 3.63e-04 TCTGTCATTA TTTTTTGT TA chrIII:2811580-2811660 66 3.63e-04 TTCCTGGTTT TTTTTCGT CAAAGTT chrIV:2607900-2607980 72 3.63e-04 GACGAATTTT TTTTTTGT T chrIII:1616730-1616810 10 3.63e-04 AAAATGTTT TTTtttgt tgaaaattgg chrIV:3131221-3131301 57 3.89e-04 TTTTCAGGAA TTTTTAGC CGAAATATGG chrI:7656668-7656748 19 3.89e-04 TTCTTCGCAG TTTTTAGC TATGAGCGAG chrIII:1616933-1617013 23 4.61e-04 aattcaaaaT TTTTCAAA AAATTGCAGA chrII:8939062-8939142 12 4.61e-04 AGAGCTTCAT TTTTCTGC TGAATGGCTA chrI:12971843-12971923 23 4.61e-04 TTATGCAAGC TTTTCAAA CTGGAAGAAT chrII:8698815-8698895 5 4.61e-04 TTTA TTTTCTGC AATATCCGCT chrIII:7101922-7102002 56 4.61e-04 TACCCACCCC TTTTCAAA CTTGCATTGT chrIII:12499313-12499393 22 5.63e-04 TTCAATGAAT TTTTTAAA TTAAAAAAAA chrIII:12429161-12429241 30 5.63e-04 TAATTTACTT TTTTTAAA GACATATTAA chrII:2570354-2570434 70 5.63e-04 CAAAAAATCT TTTTTAAA AAC chrI:14104609-14104689 14 5.63e-04 CATACAAATT TTTTTAAA TAAAATATTT chrV:13090580-13090660 41 5.63e-04 cttcaaatat tttttaaa aataaaatac chrII:11966828-11966908 9 6.31e-04 AAAGATGT TTTTCCAA CGCCCGAATC chrI:13359764-13359844 66 6.31e-04 GCAATGCCAT TTTTCTAA AATCCGC chrIV:11081122-11081202 50 6.71e-04 AAGAAATCCT TTTTCAAT TTCTCGAGAA chrII:15004612-15004692 34 6.71e-04 gggcggggcg ttttcaat tgtcagtgga chrI:6317265-6317345 33 6.71e-04 ATGCGCGTAT TTTTCAAT ACGCATTCAT chrX:8381879-8381959 27 7.67e-04 TTATAGACGT TTTTTCAA CGCATCAGCT chrV:9318207-9318287 73 7.67e-04 TCCAAATCTA TTTTTCAA chrII:5353816-5353896 70 7.67e-04 CCACGGAGGC TTTTTTAA TTT chrIII:6195872-6195952 60 7.67e-04 TTTAATACTT TTTTTTAA TACTAGGTGT chrIV:9318363-9318443 17 7.67e-04 TATATACAAA TTTTTTAA CTTTTGGCCT chrII:1323431-1323511 36 8.42e-04 AATAATTTAA TTTTTAAT TAAATCTTCC chrI:11163151-11163231 5 8.42e-04 gaaa tttttaat tccggcaatt chrII:11880684-11880764 20 9.08e-04 GTTCCTACTG TTTTCTAT TCCCCTATCG chrII:11974835-11974915 11 9.62e-04 AACattgcga tttttagg taaattttcg chrV:19519741-19519821 16 1.08e-03 TTTTCACCCT TTTTTTAT AATTTTGTGC chrV:15397329-15397409 11 1.08e-03 AATAAATTAT TTTTCCGG CAAATTGTTT chrIII:5169635-5169715 44 1.08e-03 TTTCAGCTTA TTTTTCAT TCACTTCTCC chrV:5667477-5667557 60 1.08e-03 CCATGATGGC TTTTTTAT TTTCTTGTTA chrIII:62257-62337 51 1.08e-03 gctgtcacac ttttctgg actaaatttt chrII:288988-289068 4 1.08e-03 CAA TTTTCCGG CTCCATGGCC chrIII:5853337-5853417 8 1.12e-03 AAACCAA TTTTTAAC ATAAACCTAC chrIII:12607494-12607574 67 1.12e-03 GAAAAAGTCG TTTTTAAC GGAATT chrIV:7962203-7962283 17 1.21e-03 CGTAATCTAA TTTTTTGG TGAAGGCTCA chrI:12923742-12923822 71 1.21e-03 TCAAATGAAA TTTTCCAC AA chrIII:1625866-1625946 49 1.28e-03 aacatttgga ttttttac ctggaaaatt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTYWRW MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:2878535-2878615 2.7e-05 35_[+1]_37 chrI:7602400-7602480 2.7e-05 13_[+1]_59 chrIV:17281350-17281430 2.7e-05 40_[+1]_32 chrV:3686131-3686211 2.7e-05 58_[+1]_14 chrIV:2497845-2497925 2.7e-05 18_[+1]_54 chrII:10098444-10098524 2.7e-05 13_[+1]_59 chrI:10776416-10776496 2.7e-05 16_[+1]_56 chrV:14828564-14828644 2.7e-05 67_[+1]_5 chrII:11237179-11237259 2.7e-05 40_[+1]_32 chrIII:4195539-4195619 6.6e-05 56_[+1]_16 chrII:10247319-10247399 6.6e-05 64_[+1]_8 chrI:5697186-5697266 6.6e-05 33_[+1]_39 chrI:5079694-5079774 0.00011 69_[+1]_3 chrI:9624649-9624729 0.00011 19_[+1]_53 chrX:5845324-5845404 0.00011 23_[+1]_49 chrI:8612480-8612560 0.00011 26_[+1]_46 chrI:7872224-7872304 0.00014 37_[+1]_35 chrIV:17089007-17089087 0.0002 65_[+1]_7 chrI:7490009-7490089 0.0002 13_[+1]_59 chrIV:13083090-13083170 0.0002 61_[+1]_11 chrIV:1708492-1708572 0.0002 63_[+1]_9 chrIII:12598946-12599026 0.0002 36_[+1]_36 chrV:4823874-4823954 0.0002 33_[+1]_39 chrIV:1711250-1711330 0.0002 39_[+1]_33 chrI:3826627-3826707 0.0002 70_[+1]_2 chrI:7238841-7238921 0.0002 60_[+1]_12 chrIV:11147202-11147282 0.00024 20_[+1]_52 chrIV:3336790-3336870 0.00024 63_[+1]_9 chrII:13522278-13522358 0.00024 32_[+1]_40 chrI:6135750-6135830 0.00028 21_[+1]_51 chrIII:9629967-9630047 0.00028 58_[+1]_14 chrIII:13283650-13283730 0.00028 7_[+1]_65 chrIV:11146234-11146314 0.00028 15_[+1]_57 chrI:7239103-7239183 0.00028 12_[+1]_60 chrV:6015689-6015769 0.00028 18_[+1]_54 chrIV:2390447-2390527 0.0003 14_[+1]_58 chrII:14249349-14249429 0.0003 27_[+1]_45 chrIV:419823-419903 0.0003 61_[+1]_11 chrII:2794238-2794318 0.0003 64_[+1]_8 chrI:7872430-7872510 0.00036 15_[+1]_57 chrIV:5038924-5039004 0.00036 71_[+1]_1 chrV:20497698-20497778 0.00036 27_[+1]_45 chrIII:8443773-8443853 0.00036 70_[+1]_2 chrIII:2811580-2811660 0.00036 65_[+1]_7 chrIV:2607900-2607980 0.00036 71_[+1]_1 chrIII:1616730-1616810 0.00036 9_[+1]_63 chrIV:3131221-3131301 0.00039 56_[+1]_16 chrI:7656668-7656748 0.00039 18_[+1]_54 chrIII:1616933-1617013 0.00046 22_[+1]_50 chrII:8939062-8939142 0.00046 11_[+1]_61 chrI:12971843-12971923 0.00046 22_[+1]_50 chrII:8698815-8698895 0.00046 4_[+1]_68 chrIII:7101922-7102002 0.00046 55_[+1]_17 chrIII:12499313-12499393 0.00056 21_[+1]_51 chrIII:12429161-12429241 0.00056 29_[+1]_43 chrII:2570354-2570434 0.00056 69_[+1]_3 chrI:14104609-14104689 0.00056 13_[+1]_59 chrV:13090580-13090660 0.00056 40_[+1]_32 chrII:11966828-11966908 0.00063 8_[+1]_64 chrI:13359764-13359844 0.00063 65_[+1]_7 chrIV:11081122-11081202 0.00067 49_[+1]_23 chrII:15004612-15004692 0.00067 33_[+1]_39 chrI:6317265-6317345 0.00067 32_[+1]_40 chrX:8381879-8381959 0.00077 26_[+1]_46 chrV:9318207-9318287 0.00077 72_[+1] chrII:5353816-5353896 0.00077 69_[+1]_3 chrIII:6195872-6195952 0.00077 59_[+1]_13 chrIV:9318363-9318443 0.00077 16_[+1]_56 chrII:1323431-1323511 0.00084 35_[+1]_37 chrI:11163151-11163231 0.00084 4_[+1]_68 chrII:11880684-11880764 0.00091 19_[+1]_53 chrII:11974835-11974915 0.00096 10_[+1]_62 chrV:19519741-19519821 0.0011 15_[+1]_57 chrV:15397329-15397409 0.0011 10_[+1]_62 chrIII:5169635-5169715 0.0011 43_[+1]_29 chrV:5667477-5667557 0.0011 59_[+1]_13 chrIII:62257-62337 0.0011 50_[+1]_22 chrII:288988-289068 0.0011 3_[+1]_69 chrIII:5853337-5853417 0.0011 7_[+1]_65 chrIII:12607494-12607574 0.0011 66_[+1]_6 chrIV:7962203-7962283 0.0012 16_[+1]_56 chrI:12923742-12923822 0.0012 70_[+1]_2 chrIII:1625866-1625946 0.0013 48_[+1]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTYWRW MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTYWRW width=8 seqs=83 chrI:2878535-2878615 ( 36) TTTTCAGA 1 chrI:7602400-7602480 ( 14) TTTTCAGA 1 chrIV:17281350-17281430 ( 41) TTTTCAGA 1 chrV:3686131-3686211 ( 59) TTTTCAGA 1 chrIV:2497845-2497925 ( 19) TTTTCAGA 1 chrII:10098444-10098524 ( 14) TTTTCAGA 1 chrI:10776416-10776496 ( 17) TTTTCAGA 1 chrV:14828564-14828644 ( 68) TTTTCAGA 1 chrII:11237179-11237259 ( 41) TTTTCAGA 1 chrIII:4195539-4195619 ( 57) TTTTTAGA 1 chrII:10247319-10247399 ( 65) TTTTTAGA 1 chrI:5697186-5697266 ( 34) TTTTTAGA 1 chrI:5079694-5079774 ( 70) TTTTCCGA 1 chrI:9624649-9624729 ( 20) TTTTCCGA 1 chrX:5845324-5845404 ( 24) TTTTCTGA 1 chrI:8612480-8612560 ( 27) TTTTCTGA 1 chrI:7872224-7872304 ( 38) TTTTCAGT 1 chrIV:17089007-17089087 ( 66) TTTTTCGA 1 chrI:7490009-7490089 ( 14) TTTTTCGA 1 chrIV:13083090-13083170 ( 62) TTTTTCGA 1 chrIV:1708492-1708572 ( 64) TTTTTTGA 1 chrIII:12598946-12599026 ( 37) TTTTTTGA 1 chrV:4823874-4823954 ( 34) TTTTTTGA 1 chrIV:1711250-1711330 ( 40) TTTTTCGA 1 chrI:3826627-3826707 ( 71) TTTTTCGA 1 chrI:7238841-7238921 ( 61) TTTTTTGA 1 chrIV:11147202-11147282 ( 21) TTTTTAGT 1 chrIV:3336790-3336870 ( 64) TTTTTAGT 1 chrII:13522278-13522358 ( 33) TTTTTAGT 1 chrI:6135750-6135830 ( 22) TTTTCTGT 1 chrIII:9629967-9630047 ( 59) TTTTCCGT 1 chrIII:13283650-13283730 ( 8) TTTTCTGT 1 chrIV:11146234-11146314 ( 16) TTTTCCGT 1 chrI:7239103-7239183 ( 13) TTTTCTGT 1 chrV:6015689-6015769 ( 19) TTTTCTGT 1 chrIV:2390447-2390527 ( 15) TTTTCAGC 1 chrII:14249349-14249429 ( 28) TTTTCAGC 1 chrIV:419823-419903 ( 62) TTTTCAGC 1 chrII:2794238-2794318 ( 65) TTTTCAGC 1 chrI:7872430-7872510 ( 16) TTTTTCGT 1 chrIV:5038924-5039004 ( 72) TTTTTTGT 1 chrV:20497698-20497778 ( 28) TTTTTTGT 1 chrIII:8443773-8443853 ( 71) TTTTTTGT 1 chrIII:2811580-2811660 ( 66) TTTTTCGT 1 chrIV:2607900-2607980 ( 72) TTTTTTGT 1 chrIII:1616730-1616810 ( 10) TTTTTTGT 1 chrIV:3131221-3131301 ( 57) TTTTTAGC 1 chrI:7656668-7656748 ( 19) TTTTTAGC 1 chrIII:1616933-1617013 ( 23) TTTTCAAA 1 chrII:8939062-8939142 ( 12) TTTTCTGC 1 chrI:12971843-12971923 ( 23) TTTTCAAA 1 chrII:8698815-8698895 ( 5) TTTTCTGC 1 chrIII:7101922-7102002 ( 56) TTTTCAAA 1 chrIII:12499313-12499393 ( 22) TTTTTAAA 1 chrIII:12429161-12429241 ( 30) TTTTTAAA 1 chrII:2570354-2570434 ( 70) TTTTTAAA 1 chrI:14104609-14104689 ( 14) TTTTTAAA 1 chrV:13090580-13090660 ( 41) TTTTTAAA 1 chrII:11966828-11966908 ( 9) TTTTCCAA 1 chrI:13359764-13359844 ( 66) TTTTCTAA 1 chrIV:11081122-11081202 ( 50) TTTTCAAT 1 chrII:15004612-15004692 ( 34) TTTTCAAT 1 chrI:6317265-6317345 ( 33) TTTTCAAT 1 chrX:8381879-8381959 ( 27) TTTTTCAA 1 chrV:9318207-9318287 ( 73) TTTTTCAA 1 chrII:5353816-5353896 ( 70) TTTTTTAA 1 chrIII:6195872-6195952 ( 60) TTTTTTAA 1 chrIV:9318363-9318443 ( 17) TTTTTTAA 1 chrII:1323431-1323511 ( 36) TTTTTAAT 1 chrI:11163151-11163231 ( 5) TTTTTAAT 1 chrII:11880684-11880764 ( 20) TTTTCTAT 1 chrII:11974835-11974915 ( 11) TTTTTAGG 1 chrV:19519741-19519821 ( 16) TTTTTTAT 1 chrV:15397329-15397409 ( 11) TTTTCCGG 1 chrIII:5169635-5169715 ( 44) TTTTTCAT 1 chrV:5667477-5667557 ( 60) TTTTTTAT 1 chrIII:62257-62337 ( 51) TTTTCTGG 1 chrII:288988-289068 ( 4) TTTTCCGG 1 chrIII:5853337-5853417 ( 8) TTTTTAAC 1 chrIII:12607494-12607574 ( 67) TTTTTAAC 1 chrIV:7962203-7962283 ( 17) TTTTTTGG 1 chrI:12923742-12923822 ( 71) TTTTCCAC 1 chrIII:1625866-1625946 ( 49) TTTTTTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTYWRW MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.27554 E= 1.6e-003 -1302 -1302 -1302 177 -1302 -1302 -1302 177 -1302 -1302 -1302 177 -1302 -1302 -1302 177 -1302 119 -1302 86 60 8 -1302 15 16 -1302 173 -1302 67 -51 -173 10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTYWRW MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 83 E= 1.6e-003 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.469880 0.000000 0.530120 0.457831 0.216867 0.000000 0.325301 0.337349 0.000000 0.662651 0.000000 0.481928 0.144578 0.060241 0.313253 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTYWRW MEME-1 regular expression -------------------------------------------------------------------------------- TTTT[TC][ATC][GA][AT] -------------------------------------------------------------------------------- Time 5.24 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCGSCGG MEME-2 width = 8 sites = 12 llr = 123 E-value = 1.1e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCGSCGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::1:::: pos.-specific C :19:58:: probability G a9:85:aa matrix T ::11:3:: bits 2.3 * ** 2.1 * ** 1.9 *** ** 1.6 *** ** Relative 1.4 ******** Entropy 1.2 ******** (14.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCGCCGG consensus GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGSCGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:15693430-15693510 38 5.51e-06 AGTGGGTTAA GGCGCCGG GCTTCGCGCA chrI:2069196-2069276 41 5.51e-06 gagcagcagc ggcggcgg ctggagcTGG chrI:378907-378987 70 5.51e-06 GACAGTCTGC GGCGGCGG CGA chrIV:1711250-1711330 60 5.51e-06 AAGCTTTTTG GGCGCCGG TCTAAACGTG chrV:3132255-3132335 11 5.51e-06 gactgcgggc ggcggcgg gcaacagcgg chrII:11149919-11149999 61 1.33e-05 ACTCCAGCTT GGCGCTGG TAACCGAACC chrX:4212561-4212641 2 1.33e-05 T GGCGCTGG TGGAAGGGGC chrX:2731495-2731575 5 1.33e-05 TAAT GGCGGTGG CGTGGCGTTG chrIII:4651853-4651933 16 1.90e-05 ACGTATCATT GCCGCCGG TGGATGGGTT chrI:13161022-13161102 14 3.54e-05 TTGTTATATT GGCACCGG CCCCGCTTCC chrIV:3131221-3131301 3 3.54e-05 AC GGCTGCGG CACCGAAAAA chrIII:1625866-1625946 6 4.32e-05 TTACA GGTGGCGG CTCTCTGCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGSCGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:15693430-15693510 5.5e-06 37_[+2]_35 chrI:2069196-2069276 5.5e-06 40_[+2]_32 chrI:378907-378987 5.5e-06 69_[+2]_3 chrIV:1711250-1711330 5.5e-06 59_[+2]_13 chrV:3132255-3132335 5.5e-06 10_[+2]_62 chrII:11149919-11149999 1.3e-05 60_[+2]_12 chrX:4212561-4212641 1.3e-05 1_[+2]_71 chrX:2731495-2731575 1.3e-05 4_[+2]_68 chrIII:4651853-4651933 1.9e-05 15_[+2]_57 chrI:13161022-13161102 3.5e-05 13_[+2]_59 chrIV:3131221-3131301 3.5e-05 2_[+2]_70 chrIII:1625866-1625946 4.3e-05 5_[+2]_67 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGSCGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCGSCGG width=8 seqs=12 chrIV:15693430-15693510 ( 38) GGCGCCGG 1 chrI:2069196-2069276 ( 41) GGCGGCGG 1 chrI:378907-378987 ( 70) GGCGGCGG 1 chrIV:1711250-1711330 ( 60) GGCGCCGG 1 chrV:3132255-3132335 ( 11) GGCGGCGG 1 chrII:11149919-11149999 ( 61) GGCGCTGG 1 chrX:4212561-4212641 ( 2) GGCGCTGG 1 chrX:2731495-2731575 ( 5) GGCGGTGG 1 chrIII:4651853-4651933 ( 16) GCCGCCGG 1 chrI:13161022-13161102 ( 14) GGCACCGG 1 chrIV:3131221-3131301 ( 3) GGCTGCGG 1 chrIII:1625866-1625946 ( 6) GGTGGCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGSCGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.6697 E= 1.1e+001 -1023 -1023 232 -1023 -1023 -130 220 -1023 -1023 215 -1023 -181 -185 -1023 206 -181 -1023 128 132 -1023 -1023 187 -1023 -23 -1023 -1023 232 -1023 -1023 -1023 232 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGSCGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.1e+001 0.000000 0.000000 1.000000 0.000000 0.000000 0.083333 0.916667 0.000000 0.000000 0.916667 0.000000 0.083333 0.083333 0.000000 0.833333 0.083333 0.000000 0.500000 0.500000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGSCGG MEME-2 regular expression -------------------------------------------------------------------------------- GGCG[CG][CT]GG -------------------------------------------------------------------------------- Time 9.05 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGGGGCG MEME-3 width = 8 sites = 3 llr = 38 E-value = 1.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGGGGCG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a::::a: probability G a:aaaa:a matrix T :::::::: bits 2.3 ******** 2.1 ******** 1.9 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.5 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGGGGCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGGCG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrII:14019614-14019694 26 2.72e-06 cggagctata gcggggcg gtagcgggcg chrII:15004612-15004692 26 2.72e-06 cggttcaggg gcggggcg ttttcaattg chrI:13953306-13953386 24 2.72e-06 TTCTTCGCCT GCGGGGCG GATAGCAGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGGCG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:14019614-14019694 2.7e-06 25_[+3]_47 chrII:15004612-15004692 2.7e-06 25_[+3]_47 chrI:13953306-13953386 2.7e-06 23_[+3]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGGCG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGGGGCG width=8 seqs=3 chrII:14019614-14019694 ( 26) GCGGGGCG 1 chrII:15004612-15004692 ( 26) GCGGGGCG 1 chrI:13953306-13953386 ( 24) GCGGGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGGCG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.0179 E= 1.7e+003 -823 -823 232 -823 -823 228 -823 -823 -823 -823 232 -823 -823 -823 232 -823 -823 -823 232 -823 -823 -823 232 -823 -823 228 -823 -823 -823 -823 232 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGGCG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.7e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGGGGCG MEME-3 regular expression -------------------------------------------------------------------------------- GCGGGGCG -------------------------------------------------------------------------------- Time 12.63 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCGGCCG MEME-4 width = 8 sites = 3 llr = 38 E-value = 5.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCGGCCG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:a::aa: probability G :a:aa::a matrix T :::::::: bits 2.3 ******** 2.1 ******** 1.9 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.2 ******** (18.4 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGCGGCCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGCCG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:8307521-8307601 21 2.88e-06 TCCGAAATAA CGCGGCCG AATTTTTGTG chrI:461691-461771 54 2.88e-06 CTAACATCTC CGCGGCCG CCCAGTGGTG chrX:4212561-4212641 58 2.88e-06 CACTTCCAGT CGCGGCCG CCATTTGCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGCCG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:8307521-8307601 2.9e-06 20_[+4]_52 chrI:461691-461771 2.9e-06 53_[+4]_19 chrX:4212561-4212641 2.9e-06 57_[+4]_15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGCCG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCGGCCG width=8 seqs=3 chrIII:8307521-8307601 ( 21) CGCGGCCG 1 chrI:461691-461771 ( 54) CGCGGCCG 1 chrX:4212561-4212641 ( 58) CGCGGCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGCCG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 13.0179 E= 5.8e+003 -823 228 -823 -823 -823 -823 232 -823 -823 228 -823 -823 -823 -823 232 -823 -823 -823 232 -823 -823 228 -823 -823 -823 228 -823 -823 -823 -823 232 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGCCG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 5.8e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGCCG MEME-4 regular expression -------------------------------------------------------------------------------- CGCGGCCG -------------------------------------------------------------------------------- Time 16.18 secs. ******************************************************************************** ******************************************************************************** MOTIF GGAGCAGC MEME-5 width = 8 sites = 11 llr = 109 E-value = 1.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAGCAGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::a:19:: pos.-specific C :3::91:a probability G 87:9::a: matrix T 2::1:::: bits 2.3 ** 2.1 ** 1.9 ** ** 1.6 * *** ** Relative 1.4 ******** Entropy 1.2 ******** (14.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGAGCAGC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGCAGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:2069196-2069276 30 6.19e-06 TCcagcagct ggagcagc agcggcggcg chrIII:5230572-5230652 54 6.19e-06 AACAGGTCGC GGAGCAGC ATGAGGAACA chrI:12971843-12971923 66 6.19e-06 ATTCCTCACA GGAGCAGC TGTTACA chrIV:1121688-1121768 33 6.19e-06 TGATGTTGAT GGAGCAGC TGGAGCAGCT chrIV:3297003-3297083 23 1.26e-05 GAAATCAGCA GCAGCAGC TTCTTTTGTG chrIII:1625866-1625946 20 1.26e-05 GCGGCTCTCT GCAGCAGC TTtttctcac chrII:11966828-11966908 44 2.58e-05 ATGATCACTT TGAGCAGC GCCTTCTTTC chrX:4212561-4212641 32 2.58e-05 ATAGAAGAAT TGAGCAGC AGTCGCTGCA chrII:14406636-14406716 16 2.58e-05 GTCGTACTTC GGAGCCGC CAGCGTCCCA chrV:10961506-10961586 50 4.40e-05 CGCGAAGAGG GGAGAAGC ATGGAAAAGG chrX:8381879-8381959 36 6.69e-05 TTTTTTCAAC GCATCAGC TTACTGTTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGCAGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:2069196-2069276 6.2e-06 29_[+5]_43 chrIII:5230572-5230652 6.2e-06 53_[+5]_19 chrI:12971843-12971923 6.2e-06 65_[+5]_7 chrIV:1121688-1121768 6.2e-06 32_[+5]_40 chrIV:3297003-3297083 1.3e-05 22_[+5]_50 chrIII:1625866-1625946 1.3e-05 19_[+5]_53 chrII:11966828-11966908 2.6e-05 43_[+5]_29 chrX:4212561-4212641 2.6e-05 31_[+5]_41 chrII:14406636-14406716 2.6e-05 15_[+5]_57 chrV:10961506-10961586 4.4e-05 49_[+5]_23 chrX:8381879-8381959 6.7e-05 35_[+5]_37 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGCAGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAGCAGC width=8 seqs=11 chrI:2069196-2069276 ( 30) GGAGCAGC 1 chrIII:5230572-5230652 ( 54) GGAGCAGC 1 chrI:12971843-12971923 ( 66) GGAGCAGC 1 chrIV:1121688-1121768 ( 33) GGAGCAGC 1 chrIV:3297003-3297083 ( 23) GCAGCAGC 1 chrIII:1625866-1625946 ( 20) GCAGCAGC 1 chrII:11966828-11966908 ( 44) TGAGCAGC 1 chrX:4212561-4212641 ( 32) TGAGCAGC 1 chrII:14406636-14406716 ( 16) GGAGCCGC 1 chrV:10961506-10961586 ( 50) GGAGAAGC 1 chrX:8381879-8381959 ( 36) GCATCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGCAGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 11.7222 E= 1.6e+004 -1010 -1010 203 -68 -1010 41 186 -1010 173 -1010 -1010 -1010 -1010 -1010 218 -168 -173 214 -1010 -1010 159 -118 -1010 -1010 -1010 -1010 232 -1010 -1010 228 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGCAGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.6e+004 0.000000 0.000000 0.818182 0.181818 0.000000 0.272727 0.727273 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.909091 0.090909 0.090909 0.909091 0.000000 0.000000 0.909091 0.090909 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAGCAGC MEME-5 regular expression -------------------------------------------------------------------------------- G[GC]AGCAGC -------------------------------------------------------------------------------- Time 19.75 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrII:7113347-7113427 9.21e-01 80 chrIII:12607494-12607574 7.86e-01 80 chrIII:10325127-10325207 3.59e-01 80 chrII:7105843-7105923 9.61e-01 80 chrV:6015689-6015769 4.03e-01 80 chrI:3909868-3909948 3.48e-01 80 chrI:5697186-5697266 3.10e-01 33_[+1(6.60e-05)]_39 chrV:10238204-10238284 1.00e+00 80 chrV:5841408-5841488 7.77e-01 80 chrIV:9318363-9318443 8.10e-01 80 chrV:7437624-7437704 7.09e-01 80 chrV:10343005-10343085 8.80e-01 80 chrI:7239103-7239183 5.89e-01 80 chrII:9617582-9617662 9.49e-01 80 chrIV:11146234-11146314 8.12e-03 80 chrI:11163151-11163231 6.29e-01 80 chrX:2731495-2731575 4.03e-04 4_[+2(1.33e-05)]_68 chrII:10247319-10247399 6.03e-02 64_[+1(6.60e-05)]_8 chrIV:11146033-11146113 9.93e-01 80 chrIV:5946630-5946710 9.64e-01 80 chrI:10179147-10179227 5.98e-01 80 chrIV:5374898-5374978 9.19e-01 80 chrIII:8685973-8686053 2.76e-01 80 chrII:7319674-7319754 8.23e-01 80 chrV:3132255-3132335 5.54e-05 7_[+2(5.51e-06)]_18_[+4(9.34e-05)]_\ 39 chrIII:4172343-4172423 4.93e-01 80 chrIII:7101922-7102002 5.43e-01 80 chrI:3293908-3293988 8.93e-01 80 chrIII:8449416-8449496 6.84e-01 80 chrIV:6326061-6326141 9.85e-01 80 chrI:10085670-10085750 5.46e-01 80 chrIII:1625866-1625946 3.03e-04 5_[+2(4.32e-05)]_6_[+5(1.26e-05)]_\ 53 chrV:5592041-5592121 9.92e-01 80 chrV:13669359-13669439 9.92e-01 80 chrII:4911646-4911726 7.72e-01 80 chrI:8612480-8612560 4.72e-01 80 chrIV:14658247-14658327 9.91e-01 80 chrI:7238841-7238921 3.44e-01 80 chrII:10393563-10393643 3.47e-01 80 chrIII:11091110-11091190 3.40e-01 80 chrI:13953306-13953386 4.24e-05 23_[+3(2.72e-06)]_49 chrIV:7043620-7043700 1.08e-01 80 chrII:11917766-11917846 1.47e-01 80 chrI:12861788-12861868 1.47e-02 64_[+3(8.88e-05)]_8 chrIV:13398854-13398934 4.69e-01 80 chrI:112451-112531 9.44e-01 80 chrX:6522960-6523040 2.77e-01 80 chrII:11237179-11237259 1.49e-02 40_[+1(2.73e-05)]_32 chrV:14828564-14828644 2.81e-02 67_[+1(2.73e-05)]_5 chrI:3826627-3826707 4.38e-01 80 chrIII:7495014-7495094 9.01e-01 80 chrV:13090580-13090660 6.90e-01 80 chrI:12923742-12923822 8.23e-01 80 chrV:11076442-11076522 3.50e-01 80 chrI:4920494-4920574 7.32e-01 80 chrI:2312441-2312521 2.56e-01 80 chrIV:1121688-1121768 1.79e-02 8_[+5(6.19e-06)]_16_[+5(6.19e-06)]_\ 1_[+5(6.19e-06)]_31 chrIII:900215-900295 9.82e-01 80 chrIII:7738088-7738168 9.63e-01 80 chrX:5845324-5845404 8.52e-02 80 chrII:288988-289068 4.95e-01 80 chrIII:1616730-1616810 5.67e-01 80 chrI:1157700-1157780 9.21e-01 80 chrIII:6462735-6462815 7.81e-02 80 chrIII:6195872-6195952 8.09e-01 80 chrI:509085-509165 4.22e-01 80 chrII:11880684-11880764 5.43e-01 80 chrI:4645477-4645557 3.61e-01 80 chrV:10686533-10686613 9.64e-01 80 chrX:7956505-7956585 9.97e-01 80 chrI:95045-95125 1.54e-01 80 chrIV:2607900-2607980 6.08e-01 80 chrIV:3032194-3032274 6.96e-01 80 chrIII:2811580-2811660 6.52e-01 80 chrII:8698815-8698895 5.97e-01 80 chrIV:1711250-1711330 3.84e-04 59_[+2(5.51e-06)]_13 chrII:5353816-5353896 7.28e-02 80 chrIII:10746415-10746495 7.12e-01 80 chrIV:7962203-7962283 4.63e-01 80 chrII:2925821-2925901 7.78e-01 80 chrIII:62257-62337 4.39e-01 80 chrI:10776416-10776496 2.25e-01 16_[+1(2.73e-05)]_56 chrV:4823874-4823954 5.38e-01 80 chrIV:8377611-8377691 4.96e-01 80 chrII:4229316-4229396 6.94e-01 80 chrV:1158419-1158499 1.00e+00 80 chrI:12971843-12971923 6.45e-03 65_[+5(6.19e-06)]_7 chrIV:13348790-13348870 6.75e-01 80 chrI:9624649-9624729 4.08e-01 80 chrI:7656668-7656748 3.76e-01 80 chrV:5667477-5667557 3.52e-01 80 chrI:14104609-14104689 7.07e-01 80 chrII:14406636-14406716 1.80e-03 15_[+5(2.58e-05)]_57 chrI:13359764-13359844 3.07e-01 80 chrIII:13624319-13624399 3.97e-01 80 chrI:6094510-6094590 3.45e-01 80 chrV:8415253-8415333 5.45e-01 80 chrI:6317265-6317345 6.47e-01 80 chrII:14155759-14155839 6.71e-01 80 chrII:1323431-1323511 4.69e-01 80 chrII:8441630-8441710 8.80e-01 80 chrV:13567149-13567229 9.17e-01 80 chrI:9953437-9953517 1.00e+00 80 chrII:7111282-7111362 6.84e-01 80 chrIII:4015577-4015657 7.23e-01 80 chrI:7840274-7840354 3.06e-01 80 chrI:378907-378987 6.83e-03 69_[+2(5.51e-06)]_3 chrIV:14822431-14822511 9.67e-01 80 chrV:1875672-1875752 5.55e-01 80 chrII:10543140-10543220 2.01e-01 80 chrII:4710229-4710309 9.99e-01 80 chrV:14688653-14688733 5.07e-01 80 chrV:12320546-12320626 7.18e-01 80 chrI:14467925-14468005 2.37e-01 80 chrIII:9783386-9783466 5.74e-01 80 chrI:12919304-12919384 4.21e-01 80 chrV:6326589-6326669 9.97e-01 80 chrII:13160627-13160707 9.88e-01 80 chrIII:3869626-3869706 9.81e-01 80 chrIV:11080881-11080961 9.61e-01 80 chrV:19635066-19635146 7.00e-01 80 chrIII:5230572-5230652 1.97e-03 53_[+5(6.19e-06)]_19 chrV:8421215-8421295 8.27e-01 80 chrII:2794238-2794318 2.29e-01 80 chrX:4148353-4148433 9.23e-01 80 chrIV:419823-419903 4.45e-01 80 chrIII:13283650-13283730 5.64e-01 80 chrIII:5506435-5506515 1.94e-01 80 chrV:12024178-12024258 1.21e-01 80 chrIII:5169635-5169715 8.35e-01 80 chrIII:5853337-5853417 4.80e-02 58_[+4(9.34e-05)]_14 chrIV:13510168-13510248 9.91e-01 80 chrIV:3131221-3131301 9.22e-03 2_[+2(3.54e-05)]_70 chrII:13522278-13522358 8.53e-02 80 chrIII:1419991-1420071 1.54e-02 72_[+2(7.45e-05)] chrIII:4651853-4651933 1.36e-02 15_[+2(1.90e-05)]_57 chrX:4212561-4212641 2.18e-06 1_[+2(1.33e-05)]_22_[+5(2.58e-05)]_\ 18_[+4(2.88e-06)]_15 chrIV:4450029-4450109 3.72e-02 80 chrII:14249349-14249429 9.19e-02 80 chrI:9514891-9514971 8.89e-01 80 chrII:10098444-10098524 2.04e-02 13_[+1(2.73e-05)]_59 chrII:6346584-6346664 1.00e+00 80 chrV:10944783-10944863 9.78e-01 80 chrIII:13464730-13464810 7.12e-01 80 chrII:6890387-6890467 1.00e+00 80 chrII:9618723-9618803 9.81e-01 80 chrV:15397329-15397409 7.95e-01 80 chrII:11149919-11149999 1.04e-02 60_[+2(1.33e-05)]_12 chrIV:4747576-4747656 8.96e-01 80 chrII:11966828-11966908 6.38e-03 43_[+5(2.58e-05)]_29 chrV:14008492-14008572 7.74e-01 80 chrI:7872224-7872304 4.42e-01 80 chrV:13907755-13907835 9.92e-01 80 chrI:12654835-12654915 5.38e-01 80 chrX:3793581-3793661 5.96e-01 80 chrIV:8080070-8080150 9.87e-01 80 chrV:15513416-15513496 6.84e-01 80 chrII:6587572-6587652 5.65e-01 80 chrI:2069196-2069276 1.32e-05 29_[+5(6.19e-06)]_3_[+2(5.51e-06)]_\ 19_[+2(3.54e-05)]_5 chrIV:10737184-10737264 8.40e-01 80 chrIV:11854703-11854783 9.87e-01 80 chrI:5079694-5079774 2.66e-02 80 chrII:2570354-2570434 7.36e-01 80 chrIII:12429161-12429241 3.26e-01 80 chrIII:8443773-8443853 4.30e-02 80 chrIII:12598946-12599026 4.68e-01 80 chrIV:2497845-2497925 2.40e-01 18_[+1(2.73e-05)]_54 chrV:9978465-9978545 3.01e-01 80 chrIII:9051247-9051327 9.88e-01 80 chrI:14718849-14718929 1.33e-02 58_[+3(8.88e-05)]_14 chrIII:10214564-10214644 8.33e-01 80 chrV:13649969-13650049 9.93e-01 80 chrV:20497698-20497778 4.33e-01 80 chrII:15004612-15004692 7.57e-04 25_[+3(2.72e-06)]_47 chrI:9787859-9787939 9.61e-01 80 chrII:11974835-11974915 8.58e-01 80 chrIII:8974902-8974982 1.00e+00 80 chrIV:3336790-3336870 2.18e-01 80 chrV:20847995-20848075 5.87e-01 80 chrX:13038977-13039057 3.16e-01 80 chrV:6431-6511 7.65e-01 80 chrI:8109340-8109420 8.22e-02 80 chrIII:5557487-5557567 7.07e-01 80 chrIV:7789766-7789846 1.00e+00 80 chrI:9420773-9420853 9.80e-01 80 chrV:3686131-3686211 5.67e-02 58_[+1(2.73e-05)]_14 chrX:16931591-16931671 9.94e-01 80 chrIII:6348795-6348875 3.10e-01 80 chrI:3834513-3834593 6.47e-01 80 chrV:16744897-16744977 1.80e-01 80 chrIV:1708492-1708572 2.94e-01 80 chrII:10302739-10302819 5.98e-01 80 chrIV:16503724-16503804 9.99e-01 80 chrX:16944471-16944551 6.81e-01 80 chrIII:5953668-5953748 6.63e-01 80 chrIV:10245817-10245897 4.89e-02 15_[+3(8.88e-05)]_57 chrII:14019614-14019694 2.57e-04 25_[+3(2.72e-06)]_13_[+3(8.88e-05)]_\ 13_[+3(8.88e-05)]_5 chrV:11122602-11122682 1.61e-01 80 chrV:9318207-9318287 1.97e-01 80 chrIV:13083090-13083170 5.39e-01 80 chrV:15083818-15083898 2.67e-01 80 chrV:15000402-15000482 1.73e-01 80 chrIV:5038924-5039004 3.27e-01 80 chrX:16618025-16618105 9.99e-01 80 chrII:11728601-11728681 2.02e-01 80 chrI:7490009-7490089 2.75e-01 80 chrI:7872430-7872510 2.71e-01 80 chrIII:9629967-9630047 9.95e-02 80 chrIII:4195539-4195619 6.42e-02 56_[+1(6.60e-05)]_16 chrII:8939062-8939142 5.19e-01 80 chrV:19519741-19519821 7.45e-01 80 chrI:6135750-6135830 1.39e-01 80 chrIV:2390447-2390527 1.93e-01 80 chrIII:6606255-6606335 2.50e-01 80 chrI:461691-461771 1.53e-04 53_[+4(2.88e-06)]_19 chrX:5847428-5847508 1.99e-01 80 chrIV:10934216-10934296 9.56e-01 80 chrIII:8307521-8307601 4.23e-03 20_[+4(2.88e-06)]_52 chrI:7585258-7585338 6.97e-01 80 chrX:8381879-8381959 4.02e-02 35_[+5(6.69e-05)]_37 chrV:10961506-10961586 8.19e-02 49_[+5(4.40e-05)]_23 chrV:14354570-14354650 9.99e-01 80 chrIV:17281350-17281430 3.61e-02 40_[+1(2.73e-05)]_32 chrIV:3297003-3297083 3.67e-02 19_[+5(1.26e-05)]_53 chrIV:7506178-7506258 5.53e-01 80 chrI:7079524-7079604 9.59e-01 80 chrI:10569258-10569338 1.00e+00 80 chrX:16271294-16271374 8.70e-02 80 chrIV:17089007-17089087 9.54e-02 80 chrII:10542084-10542164 3.22e-01 80 chrIII:836009-836089 4.60e-01 80 chrII:3439398-3439478 3.08e-02 3_[+3(8.88e-05)]_69 chrI:852098-852178 3.70e-01 80 chrI:7559853-7559933 9.26e-01 80 chrI:7602400-7602480 1.69e-02 13_[+1(2.73e-05)]_59 chrIII:12499313-12499393 1.18e-01 80 chrX:6867903-6867983 2.88e-01 80 chrV:103108-103188 7.64e-01 80 chrIII:1616933-1617013 3.40e-01 80 chrI:13161022-13161102 8.38e-02 13_[+2(3.54e-05)]_59 chrIV:11147202-11147282 5.76e-01 80 chrIV:15693430-15693510 2.56e-03 37_[+2(5.51e-06)]_35 chrIV:2602070-2602150 8.40e-01 80 chrI:2878535-2878615 1.48e-01 35_[+1(2.73e-05)]_37 chrX:11603279-11603359 7.70e-01 80 chrI:8868560-8868640 9.81e-01 80 chrI:10570250-10570330 8.81e-01 80 chrIV:13239385-13239465 5.06e-01 80 chrIV:11081122-11081202 3.04e-01 80 chrV:12870116-12870196 9.73e-01 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************