******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/C34F6.9.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:10327799-10327879 1.0000 80 chrIV:8377099-8377179 1.0000 80 chrII:3662095-3662175 1.0000 80 chrIV:9932212-9932292 1.0000 80 chrII:3209424-3209504 1.0000 80 chrI:3930564-3930644 1.0000 80 chrII:7755337-7755417 1.0000 80 chrV:20522389-20522469 1.0000 80 chrIII:7643251-7643331 1.0000 80 chrIII:4088654-4088734 1.0000 80 chrII:2649148-2649228 1.0000 80 chrII:9647325-9647405 1.0000 80 chrIII:9542962-9543042 1.0000 80 chrIII:3899037-3899117 1.0000 80 chrIII:4724072-4724152 1.0000 80 chrIII:7958253-7958333 1.0000 80 chrV:4570385-4570465 1.0000 80 chrIII:10608316-10608396 1.0000 80 chrI:7466683-7466763 1.0000 80 chrIII:13271014-13271094 1.0000 80 chrII:5942745-5942825 1.0000 80 chrII:8162404-8162484 1.0000 80 chrI:13391262-13391342 1.0000 80 chrII:3956916-3956996 1.0000 80 chrI:10730251-10730331 1.0000 80 chrIII:12551515-12551595 1.0000 80 chrI:10816375-10816455 1.0000 80 chrII:8661675-8661755 1.0000 80 chrI:14642667-14642747 1.0000 80 chrIII:8696856-8696936 1.0000 80 chrIV:5137972-5138052 1.0000 80 chrI:6569408-6569488 1.0000 80 chrV:13757529-13757609 1.0000 80 chrI:11964950-11965030 1.0000 80 chrII:3960510-3960590 1.0000 80 chrII:7714914-7714994 1.0000 80 chrIII:8490433-8490513 1.0000 80 chrII:15190182-15190262 1.0000 80 chrI:8011425-8011505 1.0000 80 chrV:1805927-1806007 1.0000 80 chrIII:7580738-7580818 1.0000 80 chrIV:9647992-9648072 1.0000 80 chrV:14143783-14143863 1.0000 80 chrII:5512153-5512233 1.0000 80 chrIII:9580623-9580703 1.0000 80 chrIV:7168437-7168517 1.0000 80 chrII:6709155-6709235 1.0000 80 chrIV:6393465-6393545 1.0000 80 chrIII:3703556-3703636 1.0000 80 chrV:13627310-13627390 1.0000 80 chrI:5610642-5610722 1.0000 80 chrI:5540779-5540859 1.0000 80 chrI:9516117-9516197 1.0000 80 chrIV:12651695-12651775 1.0000 80 chrV:14597945-14598025 1.0000 80 chrV:14322997-14323077 1.0000 80 chrIV:15259757-15259837 1.0000 80 chrIII:1819201-1819281 1.0000 80 chrI:2659717-2659797 1.0000 80 chrII:11979824-11979904 1.0000 80 chrIII:5755358-5755438 1.0000 80 chrI:10192915-10192995 1.0000 80 chrII:9281792-9281872 1.0000 80 chrII:11761908-11761988 1.0000 80 chrV:5687381-5687461 1.0000 80 chrI:5904376-5904456 1.0000 80 chrI:9322536-9322616 1.0000 80 chrIII:3510080-3510160 1.0000 80 chrV:8014152-8014232 1.0000 80 chrII:3270795-3270875 1.0000 80 chrI:9797890-9797970 1.0000 80 chrII:13611326-13611406 1.0000 80 chrI:10079627-10079707 1.0000 80 chrV:5963827-5963907 1.0000 80 chrV:10677609-10677689 1.0000 80 chrI:10866704-10866784 1.0000 80 chrIII:5640032-5640112 1.0000 80 chrI:6038192-6038272 1.0000 80 chrI:5357519-5357599 1.0000 80 chrI:13576522-13576602 1.0000 80 chrV:6033642-6033722 1.0000 80 chrI:10045917-10045997 1.0000 80 chrIV:9884410-9884490 1.0000 80 chrIII:3096302-3096382 1.0000 80 chrI:9929555-9929635 1.0000 80 chrIV:12156988-12157068 1.0000 80 chrII:6808662-6808742 1.0000 80 chrII:8784621-8784701 1.0000 80 chrIII:9956300-9956380 1.0000 80 chrIII:5190806-5190886 1.0000 80 chrI:8019121-8019201 1.0000 80 chrIV:11298655-11298735 1.0000 80 chrX:8057937-8058017 1.0000 80 chrI:10830955-10831035 1.0000 80 chrII:8143454-8143534 1.0000 80 chrIII:4191376-4191456 1.0000 80 chrV:10861961-10862041 1.0000 80 chrIII:4785861-4785941 1.0000 80 chrI:9471288-9471368 1.0000 80 chrII:13829786-13829866 1.0000 80 chrI:6611385-6611465 1.0000 80 chrI:4805459-4805539 1.0000 80 chrIII:11039402-11039482 1.0000 80 chrIV:17293857-17293937 1.0000 80 chrX:9774462-9774542 1.0000 80 chrIV:6806658-6806738 1.0000 80 chrI:8580230-8580310 1.0000 80 chrII:4888923-4889003 1.0000 80 chrII:8650823-8650903 1.0000 80 chrIV:9706854-9706934 1.0000 80 chrV:12697624-12697704 1.0000 80 chrIII:8614649-8614729 1.0000 80 chrI:3956723-3956803 1.0000 80 chrI:7570769-7570849 1.0000 80 chrI:13351160-13351240 1.0000 80 chrV:7894091-7894171 1.0000 80 chrX:14711347-14711427 1.0000 80 chrIV:14260890-14260970 1.0000 80 chrX:14513618-14513698 1.0000 80 chrX:8109683-8109763 1.0000 80 chrII:6689260-6689340 1.0000 80 chrII:913380-913460 1.0000 80 chrIII:9538898-9538978 1.0000 80 chrIII:10151844-10151924 1.0000 80 chrIV:10062880-10062960 1.0000 80 chrIV:6956836-6956916 1.0000 80 chrIII:10188092-10188172 1.0000 80 chrIV:14103231-14103311 1.0000 80 chrIV:7774365-7774445 1.0000 80 chrI:8103071-8103151 1.0000 80 chrV:2109457-2109537 1.0000 80 chrV:14773225-14773305 1.0000 80 chrI:10839167-10839247 1.0000 80 chrIII:1284774-1284854 1.0000 80 chrI:6945770-6945850 1.0000 80 chrIII:9507926-9508006 1.0000 80 chrII:8585414-8585494 1.0000 80 chrV:12100947-12101027 1.0000 80 chrIII:889312-889392 1.0000 80 chrV:1804298-1804378 1.0000 80 chrI:1540682-1540762 1.0000 80 chrI:3096302-3096382 1.0000 80 chrIII:9848226-9848306 1.0000 80 chrIV:12584336-12584416 1.0000 80 chrIV:10507727-10507807 1.0000 80 chrIII:5380075-5380155 1.0000 80 chrV:14177827-14177907 1.0000 80 chrIII:8268469-8268549 1.0000 80 chrI:6914114-6914194 1.0000 80 chrI:9042818-9042898 1.0000 80 chrIII:8392490-8392570 1.0000 80 chrIV:17335205-17335285 1.0000 80 chrII:11495518-11495598 1.0000 80 chrIII:4323328-4323408 1.0000 80 chrI:4900982-4901062 1.0000 80 chrI:13528246-13528326 1.0000 80 chrIV:7910466-7910546 1.0000 80 chrIV:17333666-17333746 1.0000 80 chrI:13812432-13812512 1.0000 80 chrII:5633647-5633727 1.0000 80 chrIV:8737493-8737573 1.0000 80 chrV:7437719-7437799 1.0000 80 chrII:3119081-3119161 1.0000 80 chrV:12479113-12479193 1.0000 80 chrII:9621365-9621445 1.0000 80 chrII:11050023-11050103 1.0000 80 chrIII:7357500-7357580 1.0000 80 chrV:20417984-20418064 1.0000 80 chrIV:7903548-7903628 1.0000 80 chrII:8811173-8811253 1.0000 80 chrII:6609587-6609667 1.0000 80 chrI:6061258-6061338 1.0000 80 chrI:6850059-6850139 1.0000 80 chrX:6934616-6934696 1.0000 80 chrI:8529586-8529666 1.0000 80 chrV:9664778-9664858 1.0000 80 chrIV:8605375-8605455 1.0000 80 chrIII:6019894-6019974 1.0000 80 chrIV:7166696-7166776 1.0000 80 chrIV:7016667-7016747 1.0000 80 chrI:7581895-7581975 1.0000 80 chrIII:675636-675716 1.0000 80 chrV:9128732-9128812 1.0000 80 chrII:2748398-2748478 1.0000 80 chrII:8577890-8577970 1.0000 80 chrIV:11020117-11020197 1.0000 80 chrIV:8360158-8360238 1.0000 80 chrI:9500947-9501027 1.0000 80 chrX:11974826-11974906 1.0000 80 chrII:9323091-9323171 1.0000 80 chrIV:8796346-8796426 1.0000 80 chrIII:9614390-9614470 1.0000 80 chrI:4792584-4792664 1.0000 80 chrX:9544631-9544711 1.0000 80 chrI:4381863-4381943 1.0000 80 chrV:8426380-8426460 1.0000 80 chrV:14930253-14930333 1.0000 80 chrII:6321162-6321242 1.0000 80 chrI:3906324-3906404 1.0000 80 chrIII:348633-348713 1.0000 80 chrI:534293-534373 1.0000 80 chrII:6598214-6598294 1.0000 80 chrIV:11521110-11521190 1.0000 80 chrIII:764555-764635 1.0000 80 chrV:1285871-1285951 1.0000 80 chrX:11666772-11666852 1.0000 80 chrI:9488267-9488347 1.0000 80 chrI:6810535-6810615 1.0000 80 chrV:9425787-9425867 1.0000 80 chrI:663665-663745 1.0000 80 chrX:11553047-11553127 1.0000 80 chrIII:4658510-4658590 1.0000 80 chrIII:6951609-6951689 1.0000 80 chrV:20710277-20710357 1.0000 80 chrII:7887468-7887548 1.0000 80 chrV:10255168-10255248 1.0000 80 chrIII:7375025-7375105 1.0000 80 chrX:16339304-16339384 1.0000 80 chrII:5272105-5272185 1.0000 80 chrIV:12123015-12123095 1.0000 80 chrIII:13313944-13314024 1.0000 80 chrII:7111167-7111247 1.0000 80 chrIII:4612749-4612829 1.0000 80 chrIII:6690664-6690744 1.0000 80 chrIV:15984354-15984434 1.0000 80 chrIV:9928587-9928667 1.0000 80 chrIII:4332690-4332770 1.0000 80 chrIII:13456019-13456099 1.0000 80 chrIV:9107637-9107717 1.0000 80 chrII:6122811-6122891 1.0000 80 chrI:10333184-10333264 1.0000 80 chrV:6096005-6096085 1.0000 80 chrIII:9905555-9905635 1.0000 80 chrIV:8143057-8143137 1.0000 80 chrV:14684914-14684994 1.0000 80 chrI:5618435-5618515 1.0000 80 chrI:13289853-13289933 1.0000 80 chrX:6250394-6250474 1.0000 80 chrI:6434577-6434657 1.0000 80 chrIII:4204196-4204276 1.0000 80 chrV:12161306-12161386 1.0000 80 chrV:14650137-14650217 1.0000 80 chrIV:9260461-9260541 1.0000 80 chrV:9853956-9854036 1.0000 80 chrV:12065476-12065556 1.0000 80 chrI:9131984-9132064 1.0000 80 chrIII:2578709-2578789 1.0000 80 chrV:11993832-11993912 1.0000 80 chrIV:6767389-6767469 1.0000 80 chrI:7479392-7479472 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_C34F6.9/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/C34F6.9.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.294 C 0.202 G 0.208 T 0.296 Background letter frequencies (from file dataset with add-one prior applied): A 0.294 C 0.202 G 0.208 T 0.296 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AGACGCAG MEME-1 width = 8 sites = 42 llr = 398 E-value = 6.8e-031 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGACGCAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A a1a:1:a: pos.-specific C :::8:9:: probability G :9:281:a matrix T ::::1::: bits 2.3 2.1 * 1.8 ** ** 1.6 *** *** Relative 1.4 ******** Entropy 1.2 ******** (13.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel AGACGCAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:12161306-12161386 23 9.33e-06 TAGAGCCATG AGACGCAG ACGCTTCAAT chrIV:15984354-15984434 57 9.33e-06 TTAGTGTGAG AGACGCAG GTGGTGGTAA chrIII:4612749-4612829 1 9.33e-06 . AGACGCAG AATGTGTGAG chrIII:13313944-13314024 42 9.33e-06 TTTTGAAAAG AGACGCAG AGAACGGTGG chrX:11553047-11553127 52 9.33e-06 agagcacgaa agacgcag actactagaa chrV:1285871-1285951 48 9.33e-06 GAGGAATGAG AGACGCAG ACGGTTTAGC chrI:3906324-3906404 35 9.33e-06 TTATGCCTGA AGACGCAG AGAAATTGAA chrX:11974826-11974906 72 9.33e-06 ACGTACTAAC AGACGCAG A chrIV:8360158-8360238 45 9.33e-06 AACATGTTAG AGACGCAG ATACTGAAGT chrII:2748398-2748478 34 9.33e-06 CTGAAAAAAG AGACGCAG ACAGCTTGCG chrIV:17333666-17333746 42 9.33e-06 TAGAGTGAAG AGACGCAG CTATTGAAGA chrIII:9848226-9848306 65 9.33e-06 GAGAGAGTGG AGACGCAG AGACATCG chrIV:14260890-14260970 12 9.33e-06 gagagccaag agacgcag agaaacagag chrV:7894091-7894171 15 9.33e-06 TTACCTGAAG AGACGCAG GAAACCGAGA chrIII:4191376-4191456 69 9.33e-06 CTTTCCAAAG AGACGCAG ACAT chrIV:9884410-9884490 20 9.33e-06 AGAAAATGAG AGACGCAG ACAGCGCAAT chrV:5963827-5963907 43 9.33e-06 TATGGAGAAG AGACGCAG CGTATTAGAG chrIV:9647992-9648072 38 9.33e-06 GGAATGTCAG AGACGCAG ATAGATTGCT chrIII:7958253-7958333 65 9.33e-06 AAAAAAGAAG AGACGCAG ACAACTAT chrII:2649148-2649228 28 9.33e-06 GGGAGAACCT AGACGCAG GAGAGAAAGA chrII:3209424-3209504 1 9.33e-06 . AGACGCAG ACACTTTTTT chrII:3662095-3662175 34 9.33e-06 AAGGCTGCGG AGACGCAG CATGCAAAAG chrIV:8377099-8377179 11 9.33e-06 CGAGAGAAGT AGACGCAG ACATATGTTC chrI:9516117-9516197 7 1.89e-05 AATGGC AGAGGCAG TAGGAAAAGA chrI:9488267-9488347 60 2.85e-05 CCCATATGAA AGACGGAG TGTCGTCACC chrIII:3096302-3096382 24 2.85e-05 ATAGACAATC AGACGGAG AGAAGACATG chrIII:9956300-9956380 26 4.18e-05 TTATGAAAAG AGACTCAG ACTTTTGTGT chrV:7437719-7437799 26 5.50e-05 CGAAGAAAGT AGACACAG AAAGAGAGCG chrIV:14103231-14103311 66 5.50e-05 TTGCAAAGGG AGACACAG TTTATTG chrV:12100947-12101027 6 6.82e-05 AGAAG AAACGCAG ACAGCTGAAG chrI:6611385-6611465 16 6.82e-05 ACAATCAAAG AAACGCAG ACGATAAAGA chrII:5512153-5512233 21 6.82e-05 GGCTTTGAAT AAACGCAG GCACAGAGGA chrIV:15259757-15259837 40 7.48e-05 GGGGACAGAG AGGCGCAG AGAAAAGAGC chrI:9500947-9501027 35 8.47e-05 GTTAGGCAGA AGAGGGAG CAGGAGTGCC chrI:9042818-9042898 58 8.47e-05 TTGAGAATGA AGAGGGAG GAAAAGAAAT chrX:9774462-9774542 53 8.47e-05 GACGAGAGAG AGAGGGAG GATTGGTGTG chrIV:8796346-8796426 34 9.83e-05 gagcagcagt agaagcag cagaaagagc chrIV:9260461-9260541 23 1.25e-04 AAAAAAAATA AGACGCAA AAAATAAAAT chrIII:889312-889392 56 1.25e-04 ttacacggaa agagtcag tagagcgcat chrI:5610642-5610722 46 1.25e-04 GTTGGCAAAA AGAGTCAG ATTGTGGTCT chrV:6033642-6033722 18 1.39e-04 GAAAAGATAG AGACTGAG CAGTTGTTGG chrII:8811173-8811253 11 1.52e-04 AAAGTTTTGA AGAGACAG TGTGCATTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:12161306-12161386 9.3e-06 22_[+1]_50 chrIV:15984354-15984434 9.3e-06 56_[+1]_16 chrIII:4612749-4612829 9.3e-06 [+1]_72 chrIII:13313944-13314024 9.3e-06 41_[+1]_31 chrX:11553047-11553127 9.3e-06 51_[+1]_21 chrV:1285871-1285951 9.3e-06 47_[+1]_25 chrI:3906324-3906404 9.3e-06 34_[+1]_38 chrX:11974826-11974906 9.3e-06 71_[+1]_1 chrIV:8360158-8360238 9.3e-06 44_[+1]_28 chrII:2748398-2748478 9.3e-06 33_[+1]_39 chrIV:17333666-17333746 9.3e-06 41_[+1]_31 chrIII:9848226-9848306 9.3e-06 64_[+1]_8 chrIV:14260890-14260970 9.3e-06 11_[+1]_61 chrV:7894091-7894171 9.3e-06 14_[+1]_58 chrIII:4191376-4191456 9.3e-06 68_[+1]_4 chrIV:9884410-9884490 9.3e-06 19_[+1]_53 chrV:5963827-5963907 9.3e-06 42_[+1]_30 chrIV:9647992-9648072 9.3e-06 37_[+1]_35 chrIII:7958253-7958333 9.3e-06 64_[+1]_8 chrII:2649148-2649228 9.3e-06 27_[+1]_45 chrII:3209424-3209504 9.3e-06 [+1]_72 chrII:3662095-3662175 9.3e-06 33_[+1]_39 chrIV:8377099-8377179 9.3e-06 10_[+1]_62 chrI:9516117-9516197 1.9e-05 6_[+1]_66 chrI:9488267-9488347 2.9e-05 59_[+1]_13 chrIII:3096302-3096382 2.9e-05 23_[+1]_49 chrIII:9956300-9956380 4.2e-05 25_[+1]_47 chrV:7437719-7437799 5.5e-05 25_[+1]_47 chrIV:14103231-14103311 5.5e-05 65_[+1]_7 chrV:12100947-12101027 6.8e-05 5_[+1]_67 chrI:6611385-6611465 6.8e-05 15_[+1]_57 chrII:5512153-5512233 6.8e-05 20_[+1]_52 chrIV:15259757-15259837 7.5e-05 39_[+1]_33 chrI:9500947-9501027 8.5e-05 34_[+1]_38 chrI:9042818-9042898 8.5e-05 57_[+1]_15 chrX:9774462-9774542 8.5e-05 52_[+1]_20 chrIV:8796346-8796426 9.8e-05 33_[+1]_39 chrIV:9260461-9260541 0.00013 22_[+1]_50 chrIII:889312-889392 0.00013 55_[+1]_17 chrI:5610642-5610722 0.00013 45_[+1]_27 chrV:6033642-6033722 0.00014 17_[+1]_55 chrII:8811173-8811253 0.00015 10_[+1]_62 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGACGCAG width=8 seqs=42 chrV:12161306-12161386 ( 23) AGACGCAG 1 chrIV:15984354-15984434 ( 57) AGACGCAG 1 chrIII:4612749-4612829 ( 1) AGACGCAG 1 chrIII:13313944-13314024 ( 42) AGACGCAG 1 chrX:11553047-11553127 ( 52) AGACGCAG 1 chrV:1285871-1285951 ( 48) AGACGCAG 1 chrI:3906324-3906404 ( 35) AGACGCAG 1 chrX:11974826-11974906 ( 72) AGACGCAG 1 chrIV:8360158-8360238 ( 45) AGACGCAG 1 chrII:2748398-2748478 ( 34) AGACGCAG 1 chrIV:17333666-17333746 ( 42) AGACGCAG 1 chrIII:9848226-9848306 ( 65) AGACGCAG 1 chrIV:14260890-14260970 ( 12) AGACGCAG 1 chrV:7894091-7894171 ( 15) AGACGCAG 1 chrIII:4191376-4191456 ( 69) AGACGCAG 1 chrIV:9884410-9884490 ( 20) AGACGCAG 1 chrV:5963827-5963907 ( 43) AGACGCAG 1 chrIV:9647992-9648072 ( 38) AGACGCAG 1 chrIII:7958253-7958333 ( 65) AGACGCAG 1 chrII:2649148-2649228 ( 28) AGACGCAG 1 chrII:3209424-3209504 ( 1) AGACGCAG 1 chrII:3662095-3662175 ( 34) AGACGCAG 1 chrIV:8377099-8377179 ( 11) AGACGCAG 1 chrI:9516117-9516197 ( 7) AGAGGCAG 1 chrI:9488267-9488347 ( 60) AGACGGAG 1 chrIII:3096302-3096382 ( 24) AGACGGAG 1 chrIII:9956300-9956380 ( 26) AGACTCAG 1 chrV:7437719-7437799 ( 26) AGACACAG 1 chrIV:14103231-14103311 ( 66) AGACACAG 1 chrV:12100947-12101027 ( 6) AAACGCAG 1 chrI:6611385-6611465 ( 16) AAACGCAG 1 chrII:5512153-5512233 ( 21) AAACGCAG 1 chrIV:15259757-15259837 ( 40) AGGCGCAG 1 chrI:9500947-9501027 ( 35) AGAGGGAG 1 chrI:9042818-9042898 ( 58) AGAGGGAG 1 chrX:9774462-9774542 ( 53) AGAGGGAG 1 chrIV:8796346-8796426 ( 34) AGAAGCAG 1 chrIV:9260461-9260541 ( 23) AGACGCAA 1 chrIII:889312-889392 ( 56) AGAGTCAG 1 chrI:5610642-5610722 ( 46) AGAGTCAG 1 chrV:6033642-6033722 ( 18) AGACTGAG 1 chrII:8811173-8811253 ( 11) AGAGACAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.74794 E= 6.8e-031 177 -1204 -1204 -1204 -204 -1204 216 -1204 173 -1204 -312 -1204 -362 200 -32 -1204 -204 -1204 200 -164 -1204 209 -54 -1204 177 -1204 -1204 -1204 -362 -1204 223 -1204 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 6.8e-031 1.000000 0.000000 0.000000 0.000000 0.071429 0.000000 0.928571 0.000000 0.976190 0.000000 0.023810 0.000000 0.023810 0.809524 0.166667 0.000000 0.071429 0.000000 0.833333 0.095238 0.000000 0.857143 0.142857 0.000000 1.000000 0.000000 0.000000 0.000000 0.023810 0.000000 0.976190 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACGCAG MEME-1 regular expression -------------------------------------------------------------------------------- AGACGCAG -------------------------------------------------------------------------------- Time 9.50 secs. ******************************************************************************** ******************************************************************************** MOTIF YTYTCTYT MEME-2 width = 8 sites = 88 llr = 653 E-value = 2.8e-029 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTYTCTYT MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 4:5:7:6: probability G :::::::2 matrix T 6a5a3a48 bits 2.3 2.1 1.8 * * * 1.6 * * * Relative 1.4 * * * Entropy 1.2 ******* (10.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTCTCTCT consensus C T T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTYTCTYT MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:16339304-16339384 72 1.28e-05 TTCTCTTTTt ctctctct c chrI:3906324-3906404 1 1.28e-05 . CTCTCTCT TTTGAGCAAC chrV:20417984-20418064 4 1.28e-05 tct ctctctct ctcactcgct chrI:13528246-13528326 30 1.28e-05 GTCTCTTACT CTCTCTCT GCTGTCACCC chrI:6914114-6914194 72 1.28e-05 GTTTCGGCCG CTCTCTCT C chrI:1540682-1540762 72 1.28e-05 gtctctctaa ctctctct c chrI:10839167-10839247 4 1.28e-05 TCT CTCTCTCT CTTTTTGGAA chrIII:9538898-9538978 26 1.28e-05 GCTCTTCCAC CTCTCTCT CATCCTGCGT chrII:8784621-8784701 46 1.28e-05 CATCTCTTCT CTCTCTCT TATGTGTCTA chrI:10045917-10045997 54 1.28e-05 TCCACGAACG ctctctct ctctctctct chrIII:5640032-5640112 69 1.28e-05 TCTTCATTTt ctctctct ttct chrI:5540779-5540859 26 1.28e-05 ttctcttttc ctctctct tcctctctct chrII:3960510-3960590 48 1.28e-05 AAAAAAAGAG CTCTCTCT TCCCATTTTT chrII:7887468-7887548 18 3.15e-05 CATTTCGCAA TTCTCTCT AGCACGTCTC chrIV:8605375-8605455 62 3.15e-05 TATGAGAGAT TTCTCTCT GTTTTCTTTT chrIII:9507926-9508006 1 3.15e-05 . TTCTCTCT TATATTTCCA chrI:8103071-8103151 48 3.15e-05 CTCTCGGATG TTCTCTCT GTCTCTTCTT chrII:8650823-8650903 18 3.15e-05 CTTTGTCCAT TTCTCTCT GGTATTTCTC chrX:11666772-11666852 54 5.02e-05 TTTTATGCAT CTTTCTCT GCGCGTCGTA chrIV:7903548-7903628 61 5.02e-05 ACTTGAATCC CTTTCTCT ATATCCCTCG chrIII:1284774-1284854 34 5.02e-05 TTGCGTCTTT CTTTCTCT AAATCTCTAC chrIII:10188092-10188172 18 5.02e-05 TTCGGTCTCT CTTTCTCT TTCTTCTACA chrII:8661675-8661755 57 5.02e-05 CCCTACCGCA CTTTCTCT TTGTGACGTC chrII:3209424-3209504 36 5.02e-05 ATTCTATGTT CTTTCTCT CCTGCGTCTA chrV:12161306-12161386 68 7.77e-05 TTTTCATGCG TTTTCTCT CAAGA chrIV:9928587-9928667 31 7.77e-05 ATAGTGGTCT TTTTCTCT TTCTTCTTTG chrIII:9614390-9614470 47 7.77e-05 ATTATTTTAT TTTTCTCT AAAAGACCAT chrIII:675636-675716 5 7.77e-05 atct ttttctct gcgtctcgtc chrII:3119081-3119161 13 7.77e-05 TTTTCCCTCT TTTTCTCT CGTCTCTCCT chrIII:4323328-4323408 35 7.77e-05 AGCTGTGTCT TTTTCTCT AACCTCTCTC chrI:6945770-6945850 23 7.77e-05 GTATTCTTCG TTTTCTCT CGTTTCTTTG chrV:14322997-14323077 11 7.77e-05 AGTCAAGGCT TTTTCTCT GTTTCTCTTC chrIII:4088654-4088734 3 7.77e-05 TT TTTTCTCT CACTAAAGCG chrV:12100947-12101027 37 9.64e-05 TGTCTTTTCA CTCTCTTT CTGTCTAACG chrII:8143454-8143534 56 1.24e-04 TGTCCTCAAT TTCTCTTT GGCCTAAAAT chrI:9797890-9797970 13 1.24e-04 gtctcttttc ttctcttt ttatccatct chrI:2659717-2659797 60 1.24e-04 CAGCAATTGA TTCTCTTT TTTTTCTTTC chrIII:3703556-3703636 59 1.24e-04 GACTCATTTC TTCTCTTT AAAATCGAAA chrII:5942745-5942825 53 1.24e-04 TTCGAACTAT TTCTCTTT TTCTCACATT chrI:7466683-7466763 25 1.24e-04 ttttcttttc ttctcttt cctCATTCCC chrIV:8377099-8377179 26 1.24e-04 CAGACATATG TTCTCTTT TTTCGCAACA chrI:13351160-13351240 17 1.52e-04 CTCTCTCGGT CTCTCTCG GTTTACACAC chrI:10830955-10831035 1 1.52e-04 . CTCTTTCT CCGTCACTCG chrIII:8696856-8696936 63 1.52e-04 AACTTATACA CTCTCTCG TATTCCTAGT chrIV:7910466-7910546 35 1.92e-04 TTCGCATGTC TTCTCTCG TTCTCTCACT chrI:9471288-9471368 36 1.92e-04 GTTTCCTCGC TTCTCTCG CATCATACGA chrI:4792584-4792664 67 2.20e-04 CTTAACTGAC CTTTCTTT TTTTAA chrX:9544631-9544711 66 2.60e-04 TTGGATATTC TTTTCTTT CCAATGT chrIV:17335205-17335285 1 2.60e-04 . TTTTCTTT ATTCGCGACG chrII:4888923-4889003 49 2.60e-04 TTCTTTTCAT TTTTCTTT ATCTTTTTTG chrV:10677609-10677689 55 2.60e-04 CGGTGCCCCA TTTTCTTT TGCTCCAAGA chrII:9647325-9647405 30 2.60e-04 TATTTCGCTC TTTTCTTT GGATAATATT chrV:20522389-20522469 25 2.60e-04 TCGCAATATG TTTTCTTT TTTGTCTATT chrII:8577890-8577970 31 3.00e-04 TGTCACATCT CTTTTTCT TCGATTTTTT chrV:12479113-12479193 55 3.00e-04 TCCCTACTAT CTTTTTCT TTTTTTTTTC chrV:14773225-14773305 23 3.00e-04 TCTGCGTCTC CTTTTTCT TCACTCCACA chrII:6808662-6808742 1 3.00e-04 . ctttttct gctGGTTTTT chrIV:12651695-12651775 36 3.00e-04 CTGTTTCTTC CTTTTTCT GTCATCTTCC chrIII:13271014-13271094 73 3.00e-04 CTCACCAATA Ctttttct chrIII:6690664-6690744 10 3.60e-04 CTTTTGCCC TTTTTTCT TGTTTCTTTT chrIII:4191376-4191456 35 3.60e-04 AATGTATGGC TTTTCTCG TTACATTTCT chrV:14650137-14650217 63 4.01e-04 CTCATCAATG CTCTTTTT TTTAAATGAA chrII:6321162-6321242 56 4.01e-04 TCTGTCGAGA CTCTTTTT AGCGGGTATT chrV:6033642-6033722 51 4.01e-04 GGCCAAATGA CTCTTTTT TGAGTCTTTT chrII:15190182-15190262 73 4.01e-04 GCGTCTGCGT CTCTCTTG chrV:14930253-14930333 13 4.60e-04 TTTTTTCACA TTCTTTTT CATTTCTCGT chrII:8811173-8811253 64 4.60e-04 CTACGTGTAC TTCTTTTT TAATCGAAA chrV:7437719-7437799 71 4.60e-04 ATGGCGCCGT TTCTCTTG AA chrV:14143783-14143863 68 4.60e-04 gaagGACGCC TTCTTTTT TTTTT chrII:3956916-3956996 49 4.60e-04 ctcattcttc ttcttttt tatcttTCGA chrIII:10608316-10608396 21 4.60e-04 ATTCTGAGAA TTCTTTTT CCTTTTTCCA chrII:7755337-7755417 57 4.60e-04 GAATATCGAT TTCTCTTG AAGAGGTTGT chrV:14684914-14684994 31 4.73e-04 GTATAAAAGA CTCTTTCG ACGAGAAATC chrI:6038192-6038272 9 4.73e-04 ATTTCGCG CTCTTTCG AAGACGGGAT chrI:8019121-8019201 20 4.92e-04 TGCGTTGTGA TTCTTTCG TCCTAGATGC chrIII:3096302-3096382 42 5.52e-04 AGAAGACATG CTTTTTTT TCCATTTTGT chrIII:6951609-6951689 49 6.39e-04 CTCTTCCTCC TTTTCTTG TTTGGCCTGA chrII:9323091-9323171 22 6.39e-04 GCGCATAGAA TTTTCTTG GTGGCGGGTC chrI:7570769-7570849 64 6.39e-04 TTGGTTTCAT TTTTTTTT GTTTTCGAG chrIII:5190806-5190886 70 6.39e-04 CACTTTTCTG TTTTTTTT GTG chrI:13576522-13576602 52 6.39e-04 CGTGTTGTTG TTTTTTTT GCATTCTGCA chrV:14597945-14598025 44 6.39e-04 AATCTACTTG TTTTTTTT TGTTTTCAGC chrI:13391262-13391342 9 6.39e-04 CAAAATAT TTTTTTTT TCATCAGAAA chrV:20710277-20710357 65 7.00e-04 GTCTCTTTGT GTCTCTCT ATATCTCG chrIII:6019894-6019974 7 7.00e-04 CAAAAA TTTTTTCG AAGTGATTCT chrIV:12156988-12157068 37 7.00e-04 AAAATATCGA TTTTTTCG TATCCACACT chrII:13829786-13829866 6 7.47e-04 CACCC TTCTTTTG CACACCTCCG chrIV:15259757-15259837 67 7.67e-04 CACGTCTTCT GTTTCTCT AAACCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTYTCTYT MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:16339304-16339384 1.3e-05 71_[+2]_1 chrI:3906324-3906404 1.3e-05 [+2]_72 chrV:20417984-20418064 1.3e-05 3_[+2]_69 chrI:13528246-13528326 1.3e-05 29_[+2]_43 chrI:6914114-6914194 1.3e-05 71_[+2]_1 chrI:1540682-1540762 1.3e-05 71_[+2]_1 chrI:10839167-10839247 1.3e-05 3_[+2]_69 chrIII:9538898-9538978 1.3e-05 25_[+2]_47 chrII:8784621-8784701 1.3e-05 45_[+2]_27 chrI:10045917-10045997 1.3e-05 53_[+2]_19 chrIII:5640032-5640112 1.3e-05 68_[+2]_4 chrI:5540779-5540859 1.3e-05 25_[+2]_47 chrII:3960510-3960590 1.3e-05 47_[+2]_25 chrII:7887468-7887548 3.2e-05 17_[+2]_55 chrIV:8605375-8605455 3.2e-05 61_[+2]_11 chrIII:9507926-9508006 3.2e-05 [+2]_72 chrI:8103071-8103151 3.2e-05 47_[+2]_25 chrII:8650823-8650903 3.2e-05 17_[+2]_55 chrX:11666772-11666852 5e-05 53_[+2]_19 chrIV:7903548-7903628 5e-05 60_[+2]_12 chrIII:1284774-1284854 5e-05 33_[+2]_39 chrIII:10188092-10188172 5e-05 17_[+2]_55 chrII:8661675-8661755 5e-05 56_[+2]_16 chrII:3209424-3209504 5e-05 35_[+2]_37 chrV:12161306-12161386 7.8e-05 67_[+2]_5 chrIV:9928587-9928667 7.8e-05 30_[+2]_42 chrIII:9614390-9614470 7.8e-05 46_[+2]_26 chrIII:675636-675716 7.8e-05 4_[+2]_68 chrII:3119081-3119161 7.8e-05 12_[+2]_60 chrIII:4323328-4323408 7.8e-05 34_[+2]_38 chrI:6945770-6945850 7.8e-05 22_[+2]_50 chrV:14322997-14323077 7.8e-05 10_[+2]_62 chrIII:4088654-4088734 7.8e-05 2_[+2]_70 chrV:12100947-12101027 9.6e-05 36_[+2]_36 chrII:8143454-8143534 0.00012 55_[+2]_17 chrI:9797890-9797970 0.00012 12_[+2]_60 chrI:2659717-2659797 0.00012 59_[+2]_13 chrIII:3703556-3703636 0.00012 58_[+2]_14 chrII:5942745-5942825 0.00012 52_[+2]_20 chrI:7466683-7466763 0.00012 24_[+2]_48 chrIV:8377099-8377179 0.00012 25_[+2]_47 chrI:13351160-13351240 0.00015 16_[+2]_56 chrI:10830955-10831035 0.00015 [+2]_72 chrIII:8696856-8696936 0.00015 62_[+2]_10 chrIV:7910466-7910546 0.00019 34_[+2]_38 chrI:9471288-9471368 0.00019 35_[+2]_37 chrI:4792584-4792664 0.00022 66_[+2]_6 chrX:9544631-9544711 0.00026 65_[+2]_7 chrIV:17335205-17335285 0.00026 [+2]_72 chrII:4888923-4889003 0.00026 48_[+2]_24 chrV:10677609-10677689 0.00026 54_[+2]_18 chrII:9647325-9647405 0.00026 29_[+2]_43 chrV:20522389-20522469 0.00026 24_[+2]_48 chrII:8577890-8577970 0.0003 30_[+2]_42 chrV:12479113-12479193 0.0003 54_[+2]_18 chrV:14773225-14773305 0.0003 22_[+2]_50 chrII:6808662-6808742 0.0003 [+2]_72 chrIV:12651695-12651775 0.0003 35_[+2]_37 chrIII:13271014-13271094 0.0003 72_[+2] chrIII:6690664-6690744 0.00036 9_[+2]_63 chrIII:4191376-4191456 0.00036 34_[+2]_38 chrV:14650137-14650217 0.0004 62_[+2]_10 chrII:6321162-6321242 0.0004 55_[+2]_17 chrV:6033642-6033722 0.0004 50_[+2]_22 chrII:15190182-15190262 0.0004 72_[+2] chrV:14930253-14930333 0.00046 12_[+2]_60 chrII:8811173-8811253 0.00046 63_[+2]_9 chrV:7437719-7437799 0.00046 70_[+2]_2 chrV:14143783-14143863 0.00046 67_[+2]_5 chrII:3956916-3956996 0.00046 48_[+2]_24 chrIII:10608316-10608396 0.00046 20_[+2]_52 chrII:7755337-7755417 0.00046 56_[+2]_16 chrV:14684914-14684994 0.00047 30_[+2]_42 chrI:6038192-6038272 0.00047 8_[+2]_64 chrI:8019121-8019201 0.00049 19_[+2]_53 chrIII:3096302-3096382 0.00055 41_[+2]_31 chrIII:6951609-6951689 0.00064 48_[+2]_24 chrII:9323091-9323171 0.00064 21_[+2]_51 chrI:7570769-7570849 0.00064 63_[+2]_9 chrIII:5190806-5190886 0.00064 69_[+2]_3 chrI:13576522-13576602 0.00064 51_[+2]_21 chrV:14597945-14598025 0.00064 43_[+2]_29 chrI:13391262-13391342 0.00064 8_[+2]_64 chrV:20710277-20710357 0.0007 64_[+2]_8 chrIII:6019894-6019974 0.0007 6_[+2]_66 chrIV:12156988-12157068 0.0007 36_[+2]_36 chrII:13829786-13829866 0.00075 5_[+2]_67 chrIV:15259757-15259837 0.00077 66_[+2]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTYTCTYT MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTYTCTYT width=8 seqs=88 chrX:16339304-16339384 ( 72) CTCTCTCT 1 chrI:3906324-3906404 ( 1) CTCTCTCT 1 chrV:20417984-20418064 ( 4) CTCTCTCT 1 chrI:13528246-13528326 ( 30) CTCTCTCT 1 chrI:6914114-6914194 ( 72) CTCTCTCT 1 chrI:1540682-1540762 ( 72) CTCTCTCT 1 chrI:10839167-10839247 ( 4) CTCTCTCT 1 chrIII:9538898-9538978 ( 26) CTCTCTCT 1 chrII:8784621-8784701 ( 46) CTCTCTCT 1 chrI:10045917-10045997 ( 54) CTCTCTCT 1 chrIII:5640032-5640112 ( 69) CTCTCTCT 1 chrI:5540779-5540859 ( 26) CTCTCTCT 1 chrII:3960510-3960590 ( 48) CTCTCTCT 1 chrII:7887468-7887548 ( 18) TTCTCTCT 1 chrIV:8605375-8605455 ( 62) TTCTCTCT 1 chrIII:9507926-9508006 ( 1) TTCTCTCT 1 chrI:8103071-8103151 ( 48) TTCTCTCT 1 chrII:8650823-8650903 ( 18) TTCTCTCT 1 chrX:11666772-11666852 ( 54) CTTTCTCT 1 chrIV:7903548-7903628 ( 61) CTTTCTCT 1 chrIII:1284774-1284854 ( 34) CTTTCTCT 1 chrIII:10188092-10188172 ( 18) CTTTCTCT 1 chrII:8661675-8661755 ( 57) CTTTCTCT 1 chrII:3209424-3209504 ( 36) CTTTCTCT 1 chrV:12161306-12161386 ( 68) TTTTCTCT 1 chrIV:9928587-9928667 ( 31) TTTTCTCT 1 chrIII:9614390-9614470 ( 47) TTTTCTCT 1 chrIII:675636-675716 ( 5) TTTTCTCT 1 chrII:3119081-3119161 ( 13) TTTTCTCT 1 chrIII:4323328-4323408 ( 35) TTTTCTCT 1 chrI:6945770-6945850 ( 23) TTTTCTCT 1 chrV:14322997-14323077 ( 11) TTTTCTCT 1 chrIII:4088654-4088734 ( 3) TTTTCTCT 1 chrV:12100947-12101027 ( 37) CTCTCTTT 1 chrII:8143454-8143534 ( 56) TTCTCTTT 1 chrI:9797890-9797970 ( 13) TTCTCTTT 1 chrI:2659717-2659797 ( 60) TTCTCTTT 1 chrIII:3703556-3703636 ( 59) TTCTCTTT 1 chrII:5942745-5942825 ( 53) TTCTCTTT 1 chrI:7466683-7466763 ( 25) TTCTCTTT 1 chrIV:8377099-8377179 ( 26) TTCTCTTT 1 chrI:13351160-13351240 ( 17) CTCTCTCG 1 chrI:10830955-10831035 ( 1) CTCTTTCT 1 chrIII:8696856-8696936 ( 63) CTCTCTCG 1 chrIV:7910466-7910546 ( 35) TTCTCTCG 1 chrI:9471288-9471368 ( 36) TTCTCTCG 1 chrI:4792584-4792664 ( 67) CTTTCTTT 1 chrX:9544631-9544711 ( 66) TTTTCTTT 1 chrIV:17335205-17335285 ( 1) TTTTCTTT 1 chrII:4888923-4889003 ( 49) TTTTCTTT 1 chrV:10677609-10677689 ( 55) TTTTCTTT 1 chrII:9647325-9647405 ( 30) TTTTCTTT 1 chrV:20522389-20522469 ( 25) TTTTCTTT 1 chrII:8577890-8577970 ( 31) CTTTTTCT 1 chrV:12479113-12479193 ( 55) CTTTTTCT 1 chrV:14773225-14773305 ( 23) CTTTTTCT 1 chrII:6808662-6808742 ( 1) CTTTTTCT 1 chrIV:12651695-12651775 ( 36) CTTTTTCT 1 chrIII:13271014-13271094 ( 73) CTTTTTCT 1 chrIII:6690664-6690744 ( 10) TTTTTTCT 1 chrIII:4191376-4191456 ( 35) TTTTCTCG 1 chrV:14650137-14650217 ( 63) CTCTTTTT 1 chrII:6321162-6321242 ( 56) CTCTTTTT 1 chrV:6033642-6033722 ( 51) CTCTTTTT 1 chrII:15190182-15190262 ( 73) CTCTCTTG 1 chrV:14930253-14930333 ( 13) TTCTTTTT 1 chrII:8811173-8811253 ( 64) TTCTTTTT 1 chrV:7437719-7437799 ( 71) TTCTCTTG 1 chrV:14143783-14143863 ( 68) TTCTTTTT 1 chrII:3956916-3956996 ( 49) TTCTTTTT 1 chrIII:10608316-10608396 ( 21) TTCTTTTT 1 chrII:7755337-7755417 ( 57) TTCTCTTG 1 chrV:14684914-14684994 ( 31) CTCTTTCG 1 chrI:6038192-6038272 ( 9) CTCTTTCG 1 chrI:8019121-8019201 ( 20) TTCTTTCG 1 chrIII:3096302-3096382 ( 42) CTTTTTTT 1 chrIII:6951609-6951689 ( 49) TTTTCTTG 1 chrII:9323091-9323171 ( 22) TTTTCTTG 1 chrI:7570769-7570849 ( 64) TTTTTTTT 1 chrIII:5190806-5190886 ( 70) TTTTTTTT 1 chrI:13576522-13576602 ( 52) TTTTTTTT 1 chrV:14597945-14598025 ( 44) TTTTTTTT 1 chrI:13391262-13391342 ( 9) TTTTTTTT 1 chrV:20710277-20710357 ( 65) GTCTCTCT 1 chrIII:6019894-6019974 ( 7) TTTTTTCG 1 chrIV:12156988-12157068 ( 37) TTTTTTCG 1 chrII:13829786-13829866 ( 6) TTCTTTTG 1 chrIV:15259757-15259837 ( 67) GTTTCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTYTCTYT MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.77545 E= 2.8e-029 -1310 106 -319 91 -1310 -1310 -1310 175 -1310 140 -1310 65 -1310 -1310 -1310 175 -1310 176 -1310 10 -1310 -1310 -1310 175 -1310 158 -1310 42 -1310 -1310 -19 147 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTYTCTYT MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 88 E= 2.8e-029 0.000000 0.420455 0.022727 0.556818 0.000000 0.000000 0.000000 1.000000 0.000000 0.534091 0.000000 0.465909 0.000000 0.000000 0.000000 1.000000 0.000000 0.681818 0.000000 0.318182 0.000000 0.000000 0.000000 1.000000 0.000000 0.602273 0.000000 0.397727 0.000000 0.000000 0.181818 0.818182 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTYTCTYT MEME-2 regular expression -------------------------------------------------------------------------------- [TC]T[CT]T[CT]T[CT]T -------------------------------------------------------------------------------- Time 13.57 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGMGMRW MEME-3 width = 8 sites = 59 llr = 472 E-value = 8.5e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGMGMRW MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a:6:553 pos.-specific C :::4:5:2 probability G a:a:a:51 matrix T :::::1:5 bits 2.3 * * * 2.1 * * * 1.8 *** * 1.6 *** * Relative 1.4 *** * Entropy 1.2 *** * * (11.5 bits) 0.9 ***** * 0.7 ******* 0.5 ******* 0.2 ******** 0.0 -------- Multilevel GAGAGAGT consensus C CAA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGMGMRW MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:9516117-9516197 42 9.67e-06 AATTTTACGA GAGAGCGT ACAGAGCGAG chrII:6122811-6122891 30 1.63e-05 TTTCTCGATG GAGCGCGT TTGCATAGCT chrIV:17335205-17335285 19 1.63e-05 ATTCGCGACG GAGCGCGT TTGCCATGTG chrIV:7774365-7774445 50 1.63e-05 CTTCTCAATA GAGCGCGT TTGCAGTCAA chrII:913380-913460 52 1.63e-05 CCTAGCAGTA GAGCGCGT TTACATTCTG chrI:4805459-4805539 5 1.63e-05 ATCG GAGCGCGT TTGCTCACAC chrI:10830955-10831035 54 1.63e-05 AATTGAAATA GAGCGCGT TTGCTGAGGG chrV:8014152-8014232 47 1.63e-05 AGTTCGAATG GAGCGCGT TTGCAAATAA chrI:14642667-14642747 19 1.63e-05 CATGACGATA GAGCGCGT TTGTATAGCA chrIII:9542962-9543042 73 1.63e-05 CGTAACGATA GAGCGCGT chrV:12065476-12065556 17 3.04e-05 AAATGTgaga gagagagt gagggggaaa chrIV:8796346-8796426 59 3.04e-05 agcatcaAAG GAGAGAGT CGAAAAATGA chrI:8529586-8529666 33 3.04e-05 CGCCCGGAAT GAGAGAGT GAGAGACGAA chrIII:9848226-9848306 55 3.04e-05 AAACAGGTAT GAGAGAGT GGAGACGCAG chrI:5904376-5904456 39 3.04e-05 TGAACTGAAA GAGAGAGT GTAGGGGGAT chrIII:7643251-7643331 2 3.04e-05 A GAGAGAGT AGACGGTTAG chrI:3930564-3930644 11 3.04e-05 TCGAGAGAGT GAGAGAGT ATGAGTGAGG chrIII:6019894-6019974 37 4.01e-05 AATCGCAACA GAGCGAGT TTGCATTATA chrIV:10507727-10507807 65 4.01e-05 AGGAAAAAGG GAGCGAGT GCTCGGCG chrI:9500947-9501027 17 5.37e-05 GAGTTCATCA GAGAGCAT GTTAGGCAGA chrIII:4088654-4088734 51 5.37e-05 ACAGAACACG Gagagcat agagaaatca chrIII:889312-889392 66 6.31e-05 agagtcagta gagcgcat ttgcatg chrIII:9580623-9580703 59 6.31e-05 TCACGCATTA GAGCGCAT TTGCGTTGTC chrIII:7375025-7375105 44 7.27e-05 GACGGACGGG GAGAGCGA TGGAGGATCA chrI:3906324-3906404 53 1.06e-04 AGAAATTGAA GAGAGAAT CGATGGGAAG chrV:12479113-12479193 38 1.06e-04 TCTTCAGTAA GAGAGAAT CCCTACTATC chrIV:12584336-12584416 44 1.06e-04 CATGAGGGGC GAGAGCGC GCGAGGGAAC chrIV:17293857-17293937 3 1.06e-04 AA GAGAGCGC TCGAAAACCA chrII:3960510-3960590 24 1.06e-04 ACGTGAGATT GAGAGAAT TAGAGAAAAA chrI:13812432-13812512 43 1.24e-04 ATTCTCAATG GAGCGCGC TTGCAGTTTG chrI:7570769-7570849 11 1.24e-04 ATTCTCAATG GAGCGCGC TTGCTCTTTT chrIII:4332690-4332770 28 1.38e-04 GTGCAAATGT GAGAGAGA CGAGAGAAAG chrII:8585414-8585494 55 1.38e-04 GGAAAagaga gagagaga gagaagagaT chrIII:9956300-9956380 3 1.38e-04 GC GAGAGAGA ACGCATTATG chrII:9281792-9281872 53 1.38e-04 CTCTTAGAGT GAGAGAGA AAAGATGATT chrV:7437719-7437799 37 1.84e-04 GACACAGAAA GAGAGCGG ACATTCATTC chrI:663665-663745 36 2.14e-04 CGTGACGGTG GAGCGCAC TTCCCTCCTT chrIII:348633-348713 23 2.14e-04 AGTGTCACTG GAGCGCAC TTGCCTCCTT chrIV:11020117-11020197 33 2.14e-04 CAGTGCGGTA GAGCGCAC ATGCTGCTTT chrI:10730251-10730331 47 2.14e-04 ATTATCAGTA GAGCGCAC TTGCTTTTTA chrIII:9905555-9905635 70 2.44e-04 ccaaagaagc gagagaaa tgg chrX:11553047-11553127 33 2.44e-04 aatatgggaa gagagaaa aagagcacga chrV:1285871-1285951 2 2.44e-04 C GAGAGAAA CAGATAGCAA chrIII:675636-675716 47 2.44e-04 TGAGAAGCAA GAGAGAAA GAAAAACTGC chrI:4900982-4901062 63 2.44e-04 TGAAATTCCG GAGAGAAA AGGAGACGCA chrIV:14103231-14103311 13 2.44e-04 ACTGGTGGAG GAGAGAAA GGTTTTGAAA chrII:13611326-13611406 53 2.44e-04 gagggagagt gagagaaa tagagaaata chrIII:3510080-3510160 27 2.44e-04 GGAGAGACGC GAGAGAAA AGTGTGCATA chrI:6569408-6569488 52 2.44e-04 CTTGAGAAAT GAGAGAAA TGTTAGAGAT chrII:2649148-2649228 36 2.44e-04 CTAGACGCAG GAGAGAAA GAACGTAGAA chrX:11974826-11974906 54 2.97e-04 GGAACAAATA GAGAGCAG ACGTACTAAC chrII:8162404-8162484 65 2.97e-04 ATTGTCAATG GAGCGAAC ATACATCA chrIII:10608316-10608396 68 2.97e-04 CCTTGTTTTC GAGAGCAG CTTCT chrI:7466683-7466763 69 3.03e-04 CGTATCACTG GAGCGCAG TTGC chrII:11050023-11050103 14 3.17e-04 ACAAAAACAA GAGAGAAG GAGGGACAAA chrIV:8377099-8377179 2 3.17e-04 C GAGAGAAG TAGACGCAGA chrV:14930253-14930333 50 3.41e-04 CTTTGTGAGT GAGAGTGT GCTGTGAGCT chrIV:17333666-17333746 58 3.41e-04 AGCTATTGAA GAGAGTGT GTGTGCACGT chrIV:8360158-8360238 69 3.51e-04 AAGTGCATTA GAGCGTGT TTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGMGMRW MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:9516117-9516197 9.7e-06 41_[+3]_31 chrII:6122811-6122891 1.6e-05 29_[+3]_43 chrIV:17335205-17335285 1.6e-05 18_[+3]_54 chrIV:7774365-7774445 1.6e-05 49_[+3]_23 chrII:913380-913460 1.6e-05 51_[+3]_21 chrI:4805459-4805539 1.6e-05 4_[+3]_68 chrI:10830955-10831035 1.6e-05 53_[+3]_19 chrV:8014152-8014232 1.6e-05 46_[+3]_26 chrI:14642667-14642747 1.6e-05 18_[+3]_54 chrIII:9542962-9543042 1.6e-05 72_[+3] chrV:12065476-12065556 3e-05 16_[+3]_56 chrIV:8796346-8796426 3e-05 58_[+3]_14 chrI:8529586-8529666 3e-05 32_[+3]_40 chrIII:9848226-9848306 3e-05 54_[+3]_18 chrI:5904376-5904456 3e-05 38_[+3]_34 chrIII:7643251-7643331 3e-05 1_[+3]_71 chrI:3930564-3930644 3e-05 10_[+3]_62 chrIII:6019894-6019974 4e-05 36_[+3]_36 chrIV:10507727-10507807 4e-05 64_[+3]_8 chrI:9500947-9501027 5.4e-05 16_[+3]_56 chrIII:4088654-4088734 5.4e-05 50_[+3]_22 chrIII:889312-889392 6.3e-05 65_[+3]_7 chrIII:9580623-9580703 6.3e-05 58_[+3]_14 chrIII:7375025-7375105 7.3e-05 43_[+3]_29 chrI:3906324-3906404 0.00011 52_[+3]_20 chrV:12479113-12479193 0.00011 37_[+3]_35 chrIV:12584336-12584416 0.00011 43_[+3]_29 chrIV:17293857-17293937 0.00011 2_[+3]_70 chrII:3960510-3960590 0.00011 23_[+3]_49 chrI:13812432-13812512 0.00012 42_[+3]_30 chrI:7570769-7570849 0.00012 10_[+3]_62 chrIII:4332690-4332770 0.00014 27_[+3]_45 chrII:8585414-8585494 0.00014 54_[+3]_18 chrIII:9956300-9956380 0.00014 2_[+3]_70 chrII:9281792-9281872 0.00014 52_[+3]_20 chrV:7437719-7437799 0.00018 36_[+3]_36 chrI:663665-663745 0.00021 35_[+3]_37 chrIII:348633-348713 0.00021 22_[+3]_50 chrIV:11020117-11020197 0.00021 32_[+3]_40 chrI:10730251-10730331 0.00021 46_[+3]_26 chrIII:9905555-9905635 0.00024 69_[+3]_3 chrX:11553047-11553127 0.00024 32_[+3]_40 chrV:1285871-1285951 0.00024 1_[+3]_71 chrIII:675636-675716 0.00024 46_[+3]_26 chrI:4900982-4901062 0.00024 62_[+3]_10 chrIV:14103231-14103311 0.00024 12_[+3]_60 chrII:13611326-13611406 0.00024 52_[+3]_20 chrIII:3510080-3510160 0.00024 26_[+3]_46 chrI:6569408-6569488 0.00024 51_[+3]_21 chrII:2649148-2649228 0.00024 35_[+3]_37 chrX:11974826-11974906 0.0003 53_[+3]_19 chrII:8162404-8162484 0.0003 64_[+3]_8 chrIII:10608316-10608396 0.0003 67_[+3]_5 chrI:7466683-7466763 0.0003 68_[+3]_4 chrII:11050023-11050103 0.00032 13_[+3]_59 chrIV:8377099-8377179 0.00032 1_[+3]_71 chrV:14930253-14930333 0.00034 49_[+3]_23 chrIV:17333666-17333746 0.00034 57_[+3]_15 chrIV:8360158-8360238 0.00035 68_[+3]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGMGMRW MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGMGMRW width=8 seqs=59 chrI:9516117-9516197 ( 42) GAGAGCGT 1 chrII:6122811-6122891 ( 30) GAGCGCGT 1 chrIV:17335205-17335285 ( 19) GAGCGCGT 1 chrIV:7774365-7774445 ( 50) GAGCGCGT 1 chrII:913380-913460 ( 52) GAGCGCGT 1 chrI:4805459-4805539 ( 5) GAGCGCGT 1 chrI:10830955-10831035 ( 54) GAGCGCGT 1 chrV:8014152-8014232 ( 47) GAGCGCGT 1 chrI:14642667-14642747 ( 19) GAGCGCGT 1 chrIII:9542962-9543042 ( 73) GAGCGCGT 1 chrV:12065476-12065556 ( 17) GAGAGAGT 1 chrIV:8796346-8796426 ( 59) GAGAGAGT 1 chrI:8529586-8529666 ( 33) GAGAGAGT 1 chrIII:9848226-9848306 ( 55) GAGAGAGT 1 chrI:5904376-5904456 ( 39) GAGAGAGT 1 chrIII:7643251-7643331 ( 2) GAGAGAGT 1 chrI:3930564-3930644 ( 11) GAGAGAGT 1 chrIII:6019894-6019974 ( 37) GAGCGAGT 1 chrIV:10507727-10507807 ( 65) GAGCGAGT 1 chrI:9500947-9501027 ( 17) GAGAGCAT 1 chrIII:4088654-4088734 ( 51) GAGAGCAT 1 chrIII:889312-889392 ( 66) GAGCGCAT 1 chrIII:9580623-9580703 ( 59) GAGCGCAT 1 chrIII:7375025-7375105 ( 44) GAGAGCGA 1 chrI:3906324-3906404 ( 53) GAGAGAAT 1 chrV:12479113-12479193 ( 38) GAGAGAAT 1 chrIV:12584336-12584416 ( 44) GAGAGCGC 1 chrIV:17293857-17293937 ( 3) GAGAGCGC 1 chrII:3960510-3960590 ( 24) GAGAGAAT 1 chrI:13812432-13812512 ( 43) GAGCGCGC 1 chrI:7570769-7570849 ( 11) GAGCGCGC 1 chrIII:4332690-4332770 ( 28) GAGAGAGA 1 chrII:8585414-8585494 ( 55) GAGAGAGA 1 chrIII:9956300-9956380 ( 3) GAGAGAGA 1 chrII:9281792-9281872 ( 53) GAGAGAGA 1 chrV:7437719-7437799 ( 37) GAGAGCGG 1 chrI:663665-663745 ( 36) GAGCGCAC 1 chrIII:348633-348713 ( 23) GAGCGCAC 1 chrIV:11020117-11020197 ( 33) GAGCGCAC 1 chrI:10730251-10730331 ( 47) GAGCGCAC 1 chrIII:9905555-9905635 ( 70) GAGAGAAA 1 chrX:11553047-11553127 ( 33) GAGAGAAA 1 chrV:1285871-1285951 ( 2) GAGAGAAA 1 chrIII:675636-675716 ( 47) GAGAGAAA 1 chrI:4900982-4901062 ( 63) GAGAGAAA 1 chrIV:14103231-14103311 ( 13) GAGAGAAA 1 chrII:13611326-13611406 ( 53) GAGAGAAA 1 chrIII:3510080-3510160 ( 27) GAGAGAAA 1 chrI:6569408-6569488 ( 52) GAGAGAAA 1 chrII:2649148-2649228 ( 36) GAGAGAAA 1 chrX:11974826-11974906 ( 54) GAGAGCAG 1 chrII:8162404-8162484 ( 65) GAGCGAAC 1 chrIII:10608316-10608396 ( 68) GAGAGCAG 1 chrI:7466683-7466763 ( 69) GAGCGCAG 1 chrII:11050023-11050103 ( 14) GAGAGAAG 1 chrIV:8377099-8377179 ( 2) GAGAGAAG 1 chrV:14930253-14930333 ( 50) GAGAGTGT 1 chrIV:17333666-17333746 ( 58) GAGAGTGT 1 chrIV:8360158-8360238 ( 69) GAGCGTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGMGMRW MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.9683 E= 8.5e-019 -1253 -1253 227 -1253 177 -1253 -1253 -1253 -1253 -1253 227 -1253 109 89 -1253 -1253 -1253 -1253 227 -1253 74 118 -1253 -254 64 -1253 138 -1253 -21 -40 -103 73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGMGMRW MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 59 E= 8.5e-019 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.627119 0.372881 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.491525 0.457627 0.000000 0.050847 0.457627 0.000000 0.542373 0.000000 0.254237 0.152542 0.101695 0.491525 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGMGMRW MEME-3 regular expression -------------------------------------------------------------------------------- GAG[AC]G[AC][GA][TA] -------------------------------------------------------------------------------- Time 17.15 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCGTCT MEME-4 width = 8 sites = 37 llr = 331 E-value = 3.8e-014 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::1:::: pos.-specific C a:27::8: probability G ::8:8::: matrix T :a:22a2a bits 2.3 * 2.1 * 1.8 ** * 1.6 *** *** Relative 1.4 *** **** Entropy 1.2 *** **** (12.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTGCGTCT consensus CT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:7166696-7166776 64 9.25e-06 CTCGAAATGC CTGCGTCT CATTCTCTT chrIII:6019894-6019974 59 9.25e-06 ATTATACACC CTGCGTCT CTTAAGTTCA chrX:6934616-6934696 36 9.25e-06 GTCCATTTCT CTGCGTCT CTACGTGTTT chrI:13528246-13528326 16 9.25e-06 ATTTTGCTGT CTGCGTCT CTTACTCTCT chrV:14773225-14773305 14 9.25e-06 GTTTCTCATT CTGCGTCT CCTTTTTCTT chrIV:6956836-6956916 9 9.25e-06 TTCAAAGC CTGCGTCT CATTATTCTC chrII:913380-913460 21 9.25e-06 TTTTTCCTGT CTGCGTCT CCAATCGTTT chrI:13351160-13351240 67 9.25e-06 TTCCACTTGT CTGCGTCT CTTATA chrI:6611385-6611465 63 9.25e-06 CGTTAACTGT CTGCGTCT TTCGCTTTTC chrIII:3703556-3703636 31 9.25e-06 CTTCCATTCT CTGCGTCT CTCTCCTTCT chrII:2649148-2649228 71 9.25e-06 GAAAAAGTGT CTGCGTCT CT chrII:3209424-3209504 45 9.25e-06 TCTTTCTCTC CTGCGTCT AGGTTCTCTC chrI:10327799-10327879 28 9.25e-06 CTCTCCTTCT CTGCGTCT CTATTAAGCT chrI:1540682-1540762 58 1.82e-05 CGTTTtctct ctccgtct ctctaactct chrIV:6806658-6806738 6 1.82e-05 AGGAG CTCCGTCT AAATCTCTCC chrII:13829786-13829866 19 1.82e-05 TTTTGCACAC CTCCGTCT CTTCTCAGTC chrIV:8737493-8737573 37 3.18e-05 GTATGTTTGT CTGTGTCT CTTCATCTTC chrIII:4323328-4323408 27 3.18e-05 GCTCAGAAAG CTGTGTCT TTTTCTCTAA chrIII:5640032-5640112 13 3.18e-05 CTCACGTCGT CTGTGTCT CTTTCGAGCT chrIV:6767389-6767469 35 5.85e-05 CTCTATCCAT CTGCGTTT CTATTGCTAT chrIII:9538898-9538978 38 5.85e-05 CTCTCTCATC CTGCGTTT CTTTCTTTTC chrII:8650823-8650903 43 5.85e-05 CTCGAATTCT CTGCTTCT CTGCGCATAT chrIV:11298655-11298735 71 5.85e-05 TAGTCACTCA CTGCTTCT TG chrIII:8696856-8696936 41 5.85e-05 GCCTATCTGT CTGCGTTT CTATAACTTA chrV:14177827-14177907 34 7.20e-05 CTCACATTGT CTGAGTCT CATGAAACCA chrI:8011425-8011505 65 7.20e-05 AAAAATGTGT CTGAGTCT CTACTATA chrIV:7774365-7774445 19 8.51e-05 CGCGTTTCGT CTCTGTCT ATGTAGCATT chrIII:348633-348713 35 1.11e-04 GCGCACTTGC CTCCTTCT CAATTTTTCG chrIII:5380075-5380155 2 1.11e-04 T CTCCGTTT TCTCAAGAAA chrX:14711347-14711427 7 1.11e-04 GGCACA CTCCTTCT CCGCATCTCT chrV:12697624-12697704 62 1.18e-04 TCTCGAATTT CTGCGTCG ATTAGAATAT chrV:9128732-9128812 7 1.57e-04 GCGTCT CTGTGTTT CAGTATACAT chrX:14513618-14513698 60 1.57e-04 AAGAGCGTCA CTGTGTTT GCACACATCG chrV:10677609-10677689 2 1.57e-04 T CTGTTTCT CAATTTCTCT chrIV:12651695-12651775 26 1.57e-04 AAATTGTTTT CTGTTTCT TCCTTTTTCT chrV:20710277-20710357 51 1.89e-04 GTCTCGCTGT CTCAGTCT CTTTGTGTCT chrI:10866704-10866784 65 1.89e-04 GACATAAGCT CTGCTTTT TGAGTCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:7166696-7166776 9.2e-06 63_[+4]_9 chrIII:6019894-6019974 9.2e-06 58_[+4]_14 chrX:6934616-6934696 9.2e-06 35_[+4]_37 chrI:13528246-13528326 9.2e-06 15_[+4]_57 chrV:14773225-14773305 9.2e-06 13_[+4]_59 chrIV:6956836-6956916 9.2e-06 8_[+4]_64 chrII:913380-913460 9.2e-06 20_[+4]_52 chrI:13351160-13351240 9.2e-06 66_[+4]_6 chrI:6611385-6611465 9.2e-06 62_[+4]_10 chrIII:3703556-3703636 9.2e-06 30_[+4]_42 chrII:2649148-2649228 9.2e-06 70_[+4]_2 chrII:3209424-3209504 9.2e-06 44_[+4]_28 chrI:10327799-10327879 9.2e-06 27_[+4]_45 chrI:1540682-1540762 1.8e-05 57_[+4]_15 chrIV:6806658-6806738 1.8e-05 5_[+4]_67 chrII:13829786-13829866 1.8e-05 18_[+4]_54 chrIV:8737493-8737573 3.2e-05 36_[+4]_36 chrIII:4323328-4323408 3.2e-05 26_[+4]_46 chrIII:5640032-5640112 3.2e-05 12_[+4]_60 chrIV:6767389-6767469 5.8e-05 34_[+4]_38 chrIII:9538898-9538978 5.8e-05 37_[+4]_35 chrII:8650823-8650903 5.8e-05 42_[+4]_30 chrIV:11298655-11298735 5.8e-05 70_[+4]_2 chrIII:8696856-8696936 5.8e-05 40_[+4]_32 chrV:14177827-14177907 7.2e-05 33_[+4]_39 chrI:8011425-8011505 7.2e-05 64_[+4]_8 chrIV:7774365-7774445 8.5e-05 18_[+4]_54 chrIII:348633-348713 0.00011 34_[+4]_38 chrIII:5380075-5380155 0.00011 1_[+4]_71 chrX:14711347-14711427 0.00011 6_[+4]_66 chrV:12697624-12697704 0.00012 61_[+4]_11 chrV:9128732-9128812 0.00016 6_[+4]_66 chrX:14513618-14513698 0.00016 59_[+4]_13 chrV:10677609-10677689 0.00016 1_[+4]_71 chrIV:12651695-12651775 0.00016 25_[+4]_47 chrV:20710277-20710357 0.00019 50_[+4]_22 chrI:10866704-10866784 0.00019 64_[+4]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCGTCT width=8 seqs=37 chrIV:7166696-7166776 ( 64) CTGCGTCT 1 chrIII:6019894-6019974 ( 59) CTGCGTCT 1 chrX:6934616-6934696 ( 36) CTGCGTCT 1 chrI:13528246-13528326 ( 16) CTGCGTCT 1 chrV:14773225-14773305 ( 14) CTGCGTCT 1 chrIV:6956836-6956916 ( 9) CTGCGTCT 1 chrII:913380-913460 ( 21) CTGCGTCT 1 chrI:13351160-13351240 ( 67) CTGCGTCT 1 chrI:6611385-6611465 ( 63) CTGCGTCT 1 chrIII:3703556-3703636 ( 31) CTGCGTCT 1 chrII:2649148-2649228 ( 71) CTGCGTCT 1 chrII:3209424-3209504 ( 45) CTGCGTCT 1 chrI:10327799-10327879 ( 28) CTGCGTCT 1 chrI:1540682-1540762 ( 58) CTCCGTCT 1 chrIV:6806658-6806738 ( 6) CTCCGTCT 1 chrII:13829786-13829866 ( 19) CTCCGTCT 1 chrIV:8737493-8737573 ( 37) CTGTGTCT 1 chrIII:4323328-4323408 ( 27) CTGTGTCT 1 chrIII:5640032-5640112 ( 13) CTGTGTCT 1 chrIV:6767389-6767469 ( 35) CTGCGTTT 1 chrIII:9538898-9538978 ( 38) CTGCGTTT 1 chrII:8650823-8650903 ( 43) CTGCTTCT 1 chrIV:11298655-11298735 ( 71) CTGCTTCT 1 chrIII:8696856-8696936 ( 41) CTGCGTTT 1 chrV:14177827-14177907 ( 34) CTGAGTCT 1 chrI:8011425-8011505 ( 65) CTGAGTCT 1 chrIV:7774365-7774445 ( 19) CTCTGTCT 1 chrIII:348633-348713 ( 35) CTCCTTCT 1 chrIII:5380075-5380155 ( 2) CTCCGTTT 1 chrX:14711347-14711427 ( 7) CTCCTTCT 1 chrV:12697624-12697704 ( 62) CTGCGTCG 1 chrV:9128732-9128812 ( 7) CTGTGTTT 1 chrX:14513618-14513698 ( 60) CTGTGTTT 1 chrV:10677609-10677689 ( 2) CTGTTTCT 1 chrIV:12651695-12651775 ( 26) CTGTTTCT 1 chrV:20710277-20710357 ( 51) CTCAGTCT 1 chrI:10866704-10866784 ( 65) CTGCTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.3679 E= 3.8e-014 -1185 231 -1185 -1185 -1185 -1185 -1185 175 -1185 10 192 -1185 -186 180 -1185 -45 -1185 -1185 196 -65 -1185 -1185 -1185 175 -1185 201 -1185 -65 -1185 -1185 -294 171 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 3.8e-014 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.216216 0.783784 0.000000 0.081081 0.702703 0.000000 0.216216 0.000000 0.000000 0.810811 0.189189 0.000000 0.000000 0.000000 1.000000 0.000000 0.810811 0.000000 0.189189 0.000000 0.000000 0.027027 0.972973 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGTCT MEME-4 regular expression -------------------------------------------------------------------------------- CT[GC][CT]GTCT -------------------------------------------------------------------------------- Time 20.57 secs. ******************************************************************************** ******************************************************************************** MOTIF GAAAARAA MEME-5 width = 8 sites = 73 llr = 539 E-value = 2.7e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAAAARAA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 2a88a697 pos.-specific C :::::::: probability G 8:22:413 matrix T :::::::: bits 2.3 2.1 1.8 * 1.6 ** * Relative 1.4 ** * * Entropy 1.2 ***** ** (10.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAAAAAAA consensus GG G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAARAA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrV:9853956-9854036 65 6.74e-05 TTTGTGAGAT GAAAAAAA GCAGAGGA chrII:7111167-7111247 46 6.74e-05 AAAAAGAAGA GAAAAAAA GAGAAGTGGA chrII:5272105-5272185 59 6.74e-05 ACGAGTAGAA GAAAAAAA GGAAAGAAAA chrII:6321162-6321242 12 6.74e-05 AAATTTCAGT GAAAAAAA ACTAAAATGG chrII:9621365-9621445 7 6.74e-05 CCGGAC GAAAAAAA AAGTGAAAAA chrI:9042818-9042898 66 6.74e-05 GAAGAGGGAG GAAAAGAA ATATAGA chrIII:9848226-9848306 3 6.74e-05 AA GAAAAAAA CATTAAAAAA chrV:2109457-2109537 67 6.74e-05 ACCTAGTTGG GAAAAAAA CCAATA chrIV:10062880-10062960 21 6.74e-05 AACGGCAGCG GAAAAAAA GAAAAGAAAA chrI:3956723-3956803 40 6.74e-05 GAAATTTCTG GAAAAAAA TGAATAAAAC chrV:10861961-10862041 23 6.74e-05 gaagaaagat gaaaagaa aaagagacaa chrII:6808662-6808742 54 6.74e-05 GCCAGTTGGG GAAAAGAA GAAGAAGCGG chrI:5357519-5357599 70 6.74e-05 AGAAAAAGAG GAAAAAAA GGA chrII:3270795-3270875 9 6.74e-05 TCTTATTA GAAAAGAA AGAGGTGAGA chrV:5687381-5687461 64 6.74e-05 AAGAATTAGA GAAAAAAA GCATAAAGT chrII:9281792-9281872 22 6.74e-05 ATTTGCGAGA GAAAAGAA AAAAGAAAAC chrI:9516117-9516197 18 6.74e-05 GAGGCAGTAG GAAAAGAA CAACAAAATT chrII:3960510-3960590 36 6.74e-05 GAGAATTAGA GAAAAAAA AGAGCTCTCT chrIII:4724072-4724152 31 6.74e-05 agcaattgtt gaaaaaaa aaaaaaaaaa chrIII:3899037-3899117 9 6.74e-05 AAAATAAC GAAAAAAA TACAAGAATA chrIV:8377099-8377179 60 6.74e-05 AATTTGAAGA GAAAAAAA CCGACGACAT chrII:2748398-2748478 26 1.15e-04 GAGCCAATCT GAAAAAAG AGACGCAGAC chrI:8529586-8529666 48 1.15e-04 AGTGAGAGAC GAAAAAAG TGTGTAAGTG chrII:8585414-8585494 46 1.15e-04 TAGAAAACAG GAAAagag agagagagag chrII:11761908-11761988 40 1.15e-04 AAGTTGTTGT GAAAAAAG ATGTGCGCAA chrIII:1819201-1819281 30 1.15e-04 TTGTGGTGGG GAAAAAAG GAGAGGAGAA chrIV:15259757-15259837 49 1.15e-04 GAGGCGCAGA GAAAAGAG CACGTCTTCT chrIII:7580738-7580818 31 1.15e-04 TGGAGACGTA GAAAAGAG CTTTTCTGTG chrI:10327799-10327879 68 1.15e-04 AACGTCATCT GAAAAGAG GGAAA chrI:7479392-7479472 71 1.63e-04 GAGGAGAGTA GAAGAGAA AT chrIII:9905555-9905635 50 1.63e-04 GGGCATGACG Gaagaaaa aaccaaagaa chrI:6810535-6810615 45 1.63e-04 AATAGACTAA GAAGAGAA GAGACGTAGA chrI:4792584-4792664 36 1.63e-04 GAAGAGCAGT GAAGAGAA TCCAAAGCAT chrIV:14260890-14260970 72 1.63e-04 TTAAGAAACA GAAGAAAA A chrV:6033642-6033722 5 1.63e-04 AAAA GAAGAAAA GATAGAGACT chrV:8014152-8014232 11 1.63e-04 GAAGGGAAGA GAAGAGAA TGAAATCGTC chrV:14143783-14143863 46 1.63e-04 agaggaaaac gaagaaaa ataagaagGA chrV:12065476-12065556 43 2.11e-04 aagagagtga gagaagaa gagcagaTGG chrI:5618435-5618515 4 2.11e-04 AAA GAGAAGAA AATCGGCAGA chrII:6709155-6709235 36 2.11e-04 aagaagaaaa gagaaaaa ggagtgtgta chrII:5512153-5512233 3 2.11e-04 TA GAGAAAAA GGCTTTGAAT chrI:11964950-11965030 49 2.11e-04 CGAAAAAATG GAGAAAAA CTAGGAAAAA chrIV:5137972-5138052 3 2.11e-04 TA GAGAAAAA ACGAGTGAGG chrV:7437719-7437799 17 2.44e-04 GACGGAAGAC GAAGAAAG TAGACACAGA chrI:3096302-3096382 48 2.44e-04 CGTGAATATA GAagagag agagagagag chrII:6689260-6689340 44 2.44e-04 ATCACGAGAT GAAGAAAG GACTCTGAAA chrI:6569408-6569488 15 2.44e-04 AATCCTTCAA GAAGAGAG CACGAGAAAT chrI:10333184-10333264 73 2.78e-04 ATTCGCAAAC GAGAAAAG chrI:4900982-4901062 1 2.78e-04 . GAGAAGAG AGGAGCGAAG chrIII:8268469-8268549 70 2.78e-04 TGTTTTGGAC GAGAAGAG ACA chrIV:10507727-10507807 34 2.78e-04 GGGAAAAGTG GAGAAAAG CGGAAATATA chrIV:9884410-9884490 54 2.78e-04 ACGCTCGATT GAGAAAAG TTTATTTTAT chrIV:6393465-6393545 14 2.78e-04 TTTGgatgat gagaagag gatcatgatg chrV:9664778-9664858 4 3.12e-04 GTA GAGGAGAA GGAAGACGAG chrII:3662095-3662175 55 3.12e-04 GCAAAAGAAT GAGGAAAA TTTCGAAAAG chrIV:9260461-9260541 13 4.07e-04 TGCAAAAATT AAAAAAAA TAAGACGCAA chrX:8109683-8109763 53 4.07e-04 TATACATTTC AAAAAGAA GGGCGAATGC chrI:13576522-13576602 10 4.07e-04 GTCGAAGCA AAAAAAAA TCAATAATTG chrII:8661675-8661755 11 4.07e-04 TTTTTTCTTT AAAAAAAA GTGTTAAAAT chrIII:7958253-7958333 56 4.07e-04 AGACGTGTAA AAAAAGAA GAGACGCAGA chrII:2649148-2649228 1 4.07e-04 . AAAAAAAA ACATTTGAGG chrV:10255168-10255248 3 4.79e-04 CT GAAAAGGA ATGTTTGTGG chrI:8580230-8580310 69 4.79e-04 GTTTGAAGCG GAAAAGGA GAAG chrI:10730251-10730331 30 4.79e-04 AAGAGCGTTC GAAAAAGA TTATCAGTAG chrX:16339304-16339384 29 5.46e-04 TTCGTTTGCA AAAAAGAG ACATCGAACA chrIII:13456019-13456099 2 6.61e-04 A GAAAGGAA AAGCAATTGA chrIII:4612749-4612829 54 6.61e-04 AAGAAGACCA AAAGAGAA CGGAGCCTTC chrI:534293-534373 64 6.61e-04 GCGGGAATTT AAAGAGAA ATGGCATTT chrI:13812432-13812512 62 6.61e-04 TGCAGTTTGC AAAGAAAA TTCACATGTT chrI:6611385-6611465 29 6.61e-04 CGCAGACGAT AAAGAAAA GCACTCGACG chrII:7714914-7714994 55 6.61e-04 TGAAGAGATT GAAAGAAA CACAATACAA chrI:14642667-14642747 55 6.61e-04 GTGCATTTGT GAAAGGAA TTCGAATTTA chrIV:17293857-17293937 71 9.45e-04 TTCGTTTAGA GAGAAAGA GC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAARAA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrV:9853956-9854036 6.7e-05 64_[+5]_8 chrII:7111167-7111247 6.7e-05 45_[+5]_27 chrII:5272105-5272185 6.7e-05 58_[+5]_14 chrII:6321162-6321242 6.7e-05 11_[+5]_61 chrII:9621365-9621445 6.7e-05 6_[+5]_66 chrI:9042818-9042898 6.7e-05 65_[+5]_7 chrIII:9848226-9848306 6.7e-05 2_[+5]_70 chrV:2109457-2109537 6.7e-05 66_[+5]_6 chrIV:10062880-10062960 6.7e-05 20_[+5]_52 chrI:3956723-3956803 6.7e-05 39_[+5]_33 chrV:10861961-10862041 6.7e-05 22_[+5]_50 chrII:6808662-6808742 6.7e-05 53_[+5]_19 chrI:5357519-5357599 6.7e-05 69_[+5]_3 chrII:3270795-3270875 6.7e-05 8_[+5]_64 chrV:5687381-5687461 6.7e-05 63_[+5]_9 chrII:9281792-9281872 6.7e-05 21_[+5]_51 chrI:9516117-9516197 6.7e-05 17_[+5]_55 chrII:3960510-3960590 6.7e-05 35_[+5]_37 chrIII:4724072-4724152 6.7e-05 30_[+5]_42 chrIII:3899037-3899117 6.7e-05 8_[+5]_64 chrIV:8377099-8377179 6.7e-05 59_[+5]_13 chrII:2748398-2748478 0.00012 25_[+5]_47 chrI:8529586-8529666 0.00012 47_[+5]_25 chrII:8585414-8585494 0.00012 45_[+5]_27 chrII:11761908-11761988 0.00012 39_[+5]_33 chrIII:1819201-1819281 0.00012 29_[+5]_43 chrIV:15259757-15259837 0.00012 48_[+5]_24 chrIII:7580738-7580818 0.00012 30_[+5]_42 chrI:10327799-10327879 0.00012 67_[+5]_5 chrI:7479392-7479472 0.00016 70_[+5]_2 chrIII:9905555-9905635 0.00016 49_[+5]_23 chrI:6810535-6810615 0.00016 44_[+5]_28 chrI:4792584-4792664 0.00016 35_[+5]_37 chrIV:14260890-14260970 0.00016 71_[+5]_1 chrV:6033642-6033722 0.00016 4_[+5]_68 chrV:8014152-8014232 0.00016 10_[+5]_62 chrV:14143783-14143863 0.00016 45_[+5]_27 chrV:12065476-12065556 0.00021 42_[+5]_30 chrI:5618435-5618515 0.00021 3_[+5]_69 chrII:6709155-6709235 0.00021 35_[+5]_37 chrII:5512153-5512233 0.00021 2_[+5]_70 chrI:11964950-11965030 0.00021 48_[+5]_24 chrIV:5137972-5138052 0.00021 2_[+5]_70 chrV:7437719-7437799 0.00024 16_[+5]_56 chrI:3096302-3096382 0.00024 47_[+5]_25 chrII:6689260-6689340 0.00024 43_[+5]_29 chrI:6569408-6569488 0.00024 14_[+5]_58 chrI:10333184-10333264 0.00028 72_[+5] chrI:4900982-4901062 0.00028 [+5]_72 chrIII:8268469-8268549 0.00028 69_[+5]_3 chrIV:10507727-10507807 0.00028 33_[+5]_39 chrIV:9884410-9884490 0.00028 53_[+5]_19 chrIV:6393465-6393545 0.00028 13_[+5]_59 chrV:9664778-9664858 0.00031 3_[+5]_69 chrII:3662095-3662175 0.00031 54_[+5]_18 chrIV:9260461-9260541 0.00041 12_[+5]_60 chrX:8109683-8109763 0.00041 52_[+5]_20 chrI:13576522-13576602 0.00041 9_[+5]_63 chrII:8661675-8661755 0.00041 10_[+5]_62 chrIII:7958253-7958333 0.00041 55_[+5]_17 chrII:2649148-2649228 0.00041 [+5]_72 chrV:10255168-10255248 0.00048 2_[+5]_70 chrI:8580230-8580310 0.00048 68_[+5]_4 chrI:10730251-10730331 0.00048 29_[+5]_43 chrX:16339304-16339384 0.00055 28_[+5]_44 chrIII:13456019-13456099 0.00066 1_[+5]_71 chrIII:4612749-4612829 0.00066 53_[+5]_19 chrI:534293-534373 0.00066 63_[+5]_9 chrI:13812432-13812512 0.00066 61_[+5]_11 chrI:6611385-6611465 0.00066 28_[+5]_44 chrII:7714914-7714994 0.00066 54_[+5]_18 chrI:14642667-14642747 0.00066 54_[+5]_18 chrIV:17293857-17293937 0.00095 70_[+5]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAARAA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAAAARAA width=8 seqs=73 chrV:9853956-9854036 ( 65) GAAAAAAA 1 chrII:7111167-7111247 ( 46) GAAAAAAA 1 chrII:5272105-5272185 ( 59) GAAAAAAA 1 chrII:6321162-6321242 ( 12) GAAAAAAA 1 chrII:9621365-9621445 ( 7) GAAAAAAA 1 chrI:9042818-9042898 ( 66) GAAAAGAA 1 chrIII:9848226-9848306 ( 3) GAAAAAAA 1 chrV:2109457-2109537 ( 67) GAAAAAAA 1 chrIV:10062880-10062960 ( 21) GAAAAAAA 1 chrI:3956723-3956803 ( 40) GAAAAAAA 1 chrV:10861961-10862041 ( 23) GAAAAGAA 1 chrII:6808662-6808742 ( 54) GAAAAGAA 1 chrI:5357519-5357599 ( 70) GAAAAAAA 1 chrII:3270795-3270875 ( 9) GAAAAGAA 1 chrV:5687381-5687461 ( 64) GAAAAAAA 1 chrII:9281792-9281872 ( 22) GAAAAGAA 1 chrI:9516117-9516197 ( 18) GAAAAGAA 1 chrII:3960510-3960590 ( 36) GAAAAAAA 1 chrIII:4724072-4724152 ( 31) GAAAAAAA 1 chrIII:3899037-3899117 ( 9) GAAAAAAA 1 chrIV:8377099-8377179 ( 60) GAAAAAAA 1 chrII:2748398-2748478 ( 26) GAAAAAAG 1 chrI:8529586-8529666 ( 48) GAAAAAAG 1 chrII:8585414-8585494 ( 46) GAAAAGAG 1 chrII:11761908-11761988 ( 40) GAAAAAAG 1 chrIII:1819201-1819281 ( 30) GAAAAAAG 1 chrIV:15259757-15259837 ( 49) GAAAAGAG 1 chrIII:7580738-7580818 ( 31) GAAAAGAG 1 chrI:10327799-10327879 ( 68) GAAAAGAG 1 chrI:7479392-7479472 ( 71) GAAGAGAA 1 chrIII:9905555-9905635 ( 50) GAAGAAAA 1 chrI:6810535-6810615 ( 45) GAAGAGAA 1 chrI:4792584-4792664 ( 36) GAAGAGAA 1 chrIV:14260890-14260970 ( 72) GAAGAAAA 1 chrV:6033642-6033722 ( 5) GAAGAAAA 1 chrV:8014152-8014232 ( 11) GAAGAGAA 1 chrV:14143783-14143863 ( 46) GAAGAAAA 1 chrV:12065476-12065556 ( 43) GAGAAGAA 1 chrI:5618435-5618515 ( 4) GAGAAGAA 1 chrII:6709155-6709235 ( 36) GAGAAAAA 1 chrII:5512153-5512233 ( 3) GAGAAAAA 1 chrI:11964950-11965030 ( 49) GAGAAAAA 1 chrIV:5137972-5138052 ( 3) GAGAAAAA 1 chrV:7437719-7437799 ( 17) GAAGAAAG 1 chrI:3096302-3096382 ( 48) GAAGAGAG 1 chrII:6689260-6689340 ( 44) GAAGAAAG 1 chrI:6569408-6569488 ( 15) GAAGAGAG 1 chrI:10333184-10333264 ( 73) GAGAAAAG 1 chrI:4900982-4901062 ( 1) GAGAAGAG 1 chrIII:8268469-8268549 ( 70) GAGAAGAG 1 chrIV:10507727-10507807 ( 34) GAGAAAAG 1 chrIV:9884410-9884490 ( 54) GAGAAAAG 1 chrIV:6393465-6393545 ( 14) GAGAAGAG 1 chrV:9664778-9664858 ( 4) GAGGAGAA 1 chrII:3662095-3662175 ( 55) GAGGAAAA 1 chrIV:9260461-9260541 ( 13) AAAAAAAA 1 chrX:8109683-8109763 ( 53) AAAAAGAA 1 chrI:13576522-13576602 ( 10) AAAAAAAA 1 chrII:8661675-8661755 ( 11) AAAAAAAA 1 chrIII:7958253-7958333 ( 56) AAAAAGAA 1 chrII:2649148-2649228 ( 1) AAAAAAAA 1 chrV:10255168-10255248 ( 3) GAAAAGGA 1 chrI:8580230-8580310 ( 69) GAAAAGGA 1 chrI:10730251-10730331 ( 30) GAAAAAGA 1 chrX:16339304-16339384 ( 29) AAAAAGAG 1 chrIII:13456019-13456099 ( 2) GAAAGGAA 1 chrIII:4612749-4612829 ( 54) AAAGAGAA 1 chrI:534293-534373 ( 64) AAAGAGAA 1 chrI:13812432-13812512 ( 62) AAAGAAAA 1 chrI:6611385-6611465 ( 29) AAAGAAAA 1 chrII:7714914-7714994 ( 55) GAAAGAAA 1 chrI:14642667-14642747 ( 55) GAAAGGAA 1 chrIV:17293857-17293937 ( 71) GAGAAAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAARAA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.37734 E= 2.7e-013 -96 -1283 203 -1283 177 -1283 -1283 -1283 143 -1283 -2 -1283 136 -1283 25 -1283 170 -1283 -234 -1283 97 -1283 103 -1283 168 -1283 -192 -1283 133 -1283 33 -1283 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAARAA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 73 E= 2.7e-013 0.150685 0.000000 0.849315 0.000000 1.000000 0.000000 0.000000 0.000000 0.794521 0.000000 0.205479 0.000000 0.753425 0.000000 0.246575 0.000000 0.958904 0.000000 0.041096 0.000000 0.575342 0.000000 0.424658 0.000000 0.945205 0.000000 0.054795 0.000000 0.739726 0.000000 0.260274 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAARAA MEME-5 regular expression -------------------------------------------------------------------------------- GA[AG][AG]A[AG]A[AG] -------------------------------------------------------------------------------- Time 23.93 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:10327799-10327879 2.54e-05 27_[+4(9.25e-06)]_45 chrIV:8377099-8377179 4.18e-07 10_[+1(9.33e-06)]_41_[+5(6.74e-05)]_\ 13 chrII:3662095-3662175 8.68e-03 33_[+1(9.33e-06)]_39 chrIV:9932212-9932292 6.24e-01 80 chrII:3209424-3209504 1.43e-05 [+1(9.33e-06)]_27_[+2(5.02e-05)]_1_\ [+4(9.25e-06)]_28 chrI:3930564-3930644 4.22e-03 2_[+3(3.04e-05)]_[+3(3.04e-05)]_62 chrII:7755337-7755417 2.52e-01 80 chrV:20522389-20522469 3.37e-01 80 chrIII:7643251-7643331 6.42e-03 1_[+3(3.04e-05)]_71 chrIII:4088654-4088734 2.26e-03 2_[+2(7.77e-05)]_40_[+3(5.37e-05)]_\ 22 chrII:2649148-2649228 2.85e-06 27_[+1(9.33e-06)]_35_[+4(9.25e-06)]_\ 2 chrII:9647325-9647405 2.69e-01 80 chrIII:9542962-9543042 3.64e-02 72_[+3(1.63e-05)] chrIII:3899037-3899117 3.17e-02 8_[+5(6.74e-05)]_64 chrIII:4724072-4724152 4.33e-02 30_[+5(6.74e-05)]_42 chrIII:7958253-7958333 5.69e-03 64_[+1(9.33e-06)]_8 chrV:4570385-4570465 7.40e-01 80 chrIII:10608316-10608396 2.45e-02 80 chrI:7466683-7466763 1.57e-02 80 chrIII:13271014-13271094 3.54e-01 80 chrII:5942745-5942825 9.09e-02 80 chrII:8162404-8162484 2.08e-01 80 chrI:13391262-13391342 4.62e-03 80 chrII:3956916-3956996 7.77e-02 80 chrI:10730251-10730331 1.67e-02 80 chrIII:12551515-12551595 3.60e-01 80 chrI:10816375-10816455 4.40e-01 80 chrII:8661675-8661755 8.15e-03 56_[+2(5.02e-05)]_16 chrI:14642667-14642747 2.47e-02 18_[+3(1.63e-05)]_54 chrIII:8696856-8696936 5.20e-03 40_[+4(5.85e-05)]_32 chrIV:5137972-5138052 7.44e-02 80 chrI:6569408-6569488 2.09e-02 80 chrV:13757529-13757609 8.12e-01 80 chrI:11964950-11965030 1.25e-01 80 chrII:3960510-3960590 6.62e-06 35_[+5(6.74e-05)]_4_[+2(1.28e-05)]_\ 25 chrII:7714914-7714994 1.08e-01 80 chrIII:8490433-8490513 3.92e-01 80 chrII:15190182-15190262 1.64e-02 66_[+4(9.25e-06)]_6 chrI:8011425-8011505 7.55e-02 64_[+4(7.20e-05)]_8 chrV:1805927-1806007 1.39e-01 80 chrIII:7580738-7580818 2.52e-02 80 chrIV:9647992-9648072 6.32e-03 37_[+1(9.33e-06)]_35 chrV:14143783-14143863 5.48e-03 80 chrII:5512153-5512233 4.29e-03 20_[+1(6.82e-05)]_52 chrIII:9580623-9580703 1.17e-02 58_[+3(6.31e-05)]_14 chrIV:7168437-7168517 9.18e-01 80 chrII:6709155-6709235 1.36e-02 80 chrIV:6393465-6393545 1.55e-02 80 chrIII:3703556-3703636 1.74e-03 30_[+4(9.25e-06)]_42 chrV:13627310-13627390 5.44e-01 80 chrI:5610642-5610722 2.16e-02 80 chrI:5540779-5540859 1.61e-02 13_[+2(5.02e-05)]_4_[+2(1.28e-05)]_\ 2_[+2(1.28e-05)]_37 chrI:9516117-9516197 2.94e-05 6_[+1(1.89e-05)]_3_[+5(6.74e-05)]_\ 16_[+3(9.67e-06)]_31 chrIV:12651695-12651775 1.22e-02 80 chrV:14597945-14598025 1.31e-01 80 chrV:14322997-14323077 1.38e-03 10_[+2(7.77e-05)]_62 chrIV:15259757-15259837 1.79e-05 39_[+1(7.48e-05)]_33 chrIII:1819201-1819281 1.91e-02 80 chrI:2659717-2659797 8.78e-02 80 chrII:11979824-11979904 8.64e-01 80 chrIII:5755358-5755438 1.60e-02 80 chrI:10192915-10192995 9.73e-01 80 chrII:9281792-9281872 1.69e-03 21_[+5(6.74e-05)]_51 chrII:11761908-11761988 8.29e-02 80 chrV:5687381-5687461 5.52e-03 63_[+5(6.74e-05)]_9 chrI:5904376-5904456 2.34e-03 38_[+3(3.04e-05)]_34 chrI:9322536-9322616 7.22e-01 80 chrIII:3510080-3510160 2.91e-02 80 chrV:8014152-8014232 2.78e-03 46_[+3(1.63e-05)]_26 chrII:3270795-3270875 2.52e-02 8_[+5(6.74e-05)]_64 chrI:9797890-9797970 8.42e-02 80 chrII:13611326-13611406 2.13e-02 80 chrI:10079627-10079707 4.93e-01 80 chrV:5963827-5963907 4.07e-04 42_[+1(9.33e-06)]_30 chrV:10677609-10677689 3.51e-02 80 chrI:10866704-10866784 6.85e-02 80 chrIII:5640032-5640112 2.93e-03 12_[+4(3.18e-05)]_48_[+2(1.28e-05)]_\ 4 chrI:6038192-6038272 3.50e-02 80 chrI:5357519-5357599 2.28e-02 69_[+5(6.74e-05)]_3 chrI:13576522-13576602 2.44e-02 80 chrV:6033642-6033722 1.27e-04 80 chrI:10045917-10045997 2.26e-02 53_[+2(1.28e-05)]_[+2(1.28e-05)]_\ [+2(1.28e-05)]_3 chrIV:9884410-9884490 1.63e-03 19_[+1(9.33e-06)]_53 chrIII:3096302-3096382 1.75e-04 23_[+1(2.85e-05)]_49 chrI:9929555-9929635 2.68e-01 80 chrIV:12156988-12157068 3.18e-01 80 chrII:6808662-6808742 3.88e-04 53_[+5(6.74e-05)]_19 chrII:8784621-8784701 4.71e-02 1_[+2(1.28e-05)]_34_[+2(1.28e-05)]_\ 29 chrIII:9956300-9956380 3.42e-05 25_[+1(4.18e-05)]_47 chrIII:5190806-5190886 1.51e-01 80 chrI:8019121-8019201 5.08e-01 80 chrIV:11298655-11298735 1.14e-01 70_[+4(5.85e-05)]_2 chrX:8057937-8058017 9.68e-01 80 chrI:10830955-10831035 2.48e-04 53_[+3(1.63e-05)]_19 chrII:8143454-8143534 2.64e-01 80 chrIII:4191376-4191456 6.46e-03 68_[+1(9.33e-06)]_4 chrV:10861961-10862041 3.68e-02 22_[+5(6.74e-05)]_50 chrIII:4785861-4785941 3.60e-01 80 chrI:9471288-9471368 2.70e-01 80 chrII:13829786-13829866 3.87e-02 18_[+4(1.82e-05)]_54 chrI:6611385-6611465 6.11e-05 15_[+1(6.82e-05)]_39_[+4(9.25e-06)]_\ 10 chrI:4805459-4805539 7.33e-02 4_[+3(1.63e-05)]_68 chrIII:11039402-11039482 6.44e-01 80 chrIV:17293857-17293937 3.31e-03 80 chrX:9774462-9774542 1.17e-03 52_[+1(8.47e-05)]_20 chrIV:6806658-6806738 3.27e-02 5_[+4(1.82e-05)]_67 chrI:8580230-8580310 1.24e-01 80 chrII:4888923-4889003 6.85e-02 80 chrII:8650823-8650903 7.40e-03 1_[+2(7.77e-05)]_8_[+2(3.15e-05)]_\ 17_[+4(5.85e-05)]_30 chrIV:9706854-9706934 5.39e-01 80 chrV:12697624-12697704 4.88e-02 80 chrIII:8614649-8614729 2.31e-01 80 chrI:3956723-3956803 2.18e-02 39_[+5(6.74e-05)]_33 chrI:7570769-7570849 6.09e-02 80 chrI:13351160-13351240 8.01e-03 66_[+4(9.25e-06)]_6 chrV:7894091-7894171 1.54e-02 14_[+1(9.33e-06)]_58 chrX:14711347-14711427 1.73e-01 80 chrIV:14260890-14260970 1.17e-03 11_[+1(9.33e-06)]_61 chrX:14513618-14513698 2.87e-02 80 chrX:8109683-8109763 7.61e-02 80 chrII:6689260-6689340 3.57e-02 80 chrII:913380-913460 7.09e-04 20_[+4(9.25e-06)]_23_[+3(1.63e-05)]_\ 21 chrIII:9538898-9538978 5.18e-03 25_[+2(1.28e-05)]_4_[+4(5.85e-05)]_\ 35 chrIII:10151844-10151924 7.53e-01 80 chrIV:10062880-10062960 2.75e-02 20_[+5(6.74e-05)]_[+5(6.74e-05)]_44 chrIV:6956836-6956916 7.46e-02 8_[+4(9.25e-06)]_64 chrIII:10188092-10188172 1.65e-02 17_[+2(5.02e-05)]_55 chrIV:14103231-14103311 1.25e-03 65_[+1(5.50e-05)]_7 chrIV:7774365-7774445 1.48e-03 18_[+4(8.51e-05)]_23_[+3(1.63e-05)]_\ 23 chrI:8103071-8103151 1.11e-02 47_[+2(3.15e-05)]_25 chrV:2109457-2109537 6.92e-02 66_[+5(6.74e-05)]_6 chrV:14773225-14773305 7.04e-03 13_[+4(9.25e-06)]_59 chrI:10839167-10839247 1.02e-02 1_[+2(1.28e-05)]_71 chrIII:1284774-1284854 4.83e-02 33_[+2(5.02e-05)]_39 chrI:6945770-6945850 1.62e-02 22_[+2(7.77e-05)]_50 chrIII:9507926-9508006 1.56e-01 [+2(3.15e-05)]_72 chrII:8585414-8585494 3.44e-03 80 chrV:12100947-12101027 4.59e-04 5_[+1(6.82e-05)]_23_[+2(9.64e-05)]_\ 36 chrIII:889312-889392 1.01e-03 65_[+3(6.31e-05)]_7 chrV:1804298-1804378 6.71e-01 80 chrI:1540682-1540762 2.42e-03 57_[+4(1.82e-05)]_6_[+2(1.28e-05)]_\ 1 chrI:3096302-3096382 4.74e-03 80 chrIII:9848226-9848306 2.72e-05 2_[+5(6.74e-05)]_44_[+3(3.04e-05)]_\ 2_[+1(9.33e-06)]_8 chrIV:12584336-12584416 1.75e-01 80 chrIV:10507727-10507807 2.89e-03 64_[+3(4.01e-05)]_8 chrIII:5380075-5380155 4.18e-03 80 chrV:14177827-14177907 1.33e-01 33_[+4(7.20e-05)]_39 chrIII:8268469-8268549 1.02e-01 80 chrI:6914114-6914194 1.90e-02 71_[+2(1.28e-05)]_1 chrI:9042818-9042898 6.38e-03 57_[+1(8.47e-05)]_[+5(6.74e-05)]_7 chrIII:8392490-8392570 1.16e-01 80 chrIV:17335205-17335285 3.50e-03 18_[+3(1.63e-05)]_54 chrII:11495518-11495598 9.46e-01 80 chrIII:4323328-4323408 8.99e-03 26_[+4(3.18e-05)]_[+2(7.77e-05)]_38 chrI:4900982-4901062 8.02e-03 80 chrI:13528246-13528326 1.46e-03 15_[+4(9.25e-06)]_4_[+2(1.28e-05)]_\ 45 chrIV:7910466-7910546 1.82e-01 80 chrIV:17333666-17333746 6.28e-04 41_[+1(9.33e-06)]_31 chrI:13812432-13812512 5.48e-03 80 chrII:5633647-5633727 4.97e-01 80 chrIV:8737493-8737573 1.13e-01 36_[+4(3.18e-05)]_36 chrV:7437719-7437799 3.46e-05 25_[+1(5.50e-05)]_47 chrII:3119081-3119161 4.62e-02 12_[+2(7.77e-05)]_60 chrV:12479113-12479193 1.04e-03 80 chrII:9621365-9621445 1.01e-02 6_[+5(6.74e-05)]_66 chrII:11050023-11050103 1.63e-02 80 chrIII:7357500-7357580 9.43e-01 80 chrV:20417984-20418064 1.70e-02 1_[+2(1.28e-05)]_71 chrIV:7903548-7903628 4.34e-02 60_[+2(5.02e-05)]_12 chrII:8811173-8811253 2.83e-03 80 chrII:6609587-6609667 5.35e-01 80 chrI:6061258-6061338 9.94e-01 80 chrI:6850059-6850139 4.26e-01 80 chrX:6934616-6934696 3.89e-02 35_[+4(9.25e-06)]_37 chrI:8529586-8529666 9.65e-04 32_[+3(3.04e-05)]_40 chrV:9664778-9664858 8.19e-02 80 chrIV:8605375-8605455 1.04e-03 61_[+2(3.15e-05)]_11 chrIII:6019894-6019974 9.68e-05 36_[+3(4.01e-05)]_14_[+4(9.25e-06)]_\ 14 chrIV:7166696-7166776 4.68e-02 17_[+4(3.18e-05)]_38_[+4(9.25e-06)]_\ 9 chrIV:7016667-7016747 6.57e-01 80 chrI:7581895-7581975 1.17e-01 80 chrIII:675636-675716 1.94e-06 10_[+4(9.25e-06)]_62 chrV:9128732-9128812 4.30e-02 80 chrII:2748398-2748478 1.61e-03 33_[+1(9.33e-06)]_39 chrII:8577890-8577970 1.26e-01 80 chrIV:11020117-11020197 2.65e-02 80 chrIV:8360158-8360238 1.06e-02 44_[+1(9.33e-06)]_28 chrI:9500947-9501027 3.29e-04 16_[+3(5.37e-05)]_10_[+1(8.47e-05)]_\ 38 chrX:11974826-11974906 2.92e-03 71_[+1(9.33e-06)]_1 chrII:9323091-9323171 3.90e-01 80 chrIV:8796346-8796426 2.46e-03 33_[+1(9.83e-05)]_17_[+3(3.04e-05)]_\ 14 chrIII:9614390-9614470 2.63e-02 46_[+2(7.77e-05)]_9_[+2(7.77e-05)]_\ 9 chrI:4792584-4792664 2.22e-03 80 chrX:9544631-9544711 5.43e-01 80 chrI:4381863-4381943 8.97e-01 80 chrV:8426380-8426460 5.07e-01 80 chrV:14930253-14930333 1.92e-02 80 chrII:6321162-6321242 1.58e-03 11_[+5(6.74e-05)]_61 chrI:3906324-3906404 1.16e-07 [+2(1.28e-05)]_26_[+1(9.33e-06)]_38 chrIII:348633-348713 1.17e-02 80 chrI:534293-534373 1.40e-01 80 chrII:6598214-6598294 6.18e-01 80 chrIV:11521110-11521190 1.68e-01 80 chrIII:764555-764635 8.88e-01 80 chrV:1285871-1285951 1.89e-03 47_[+1(9.33e-06)]_25 chrX:11666772-11666852 4.00e-02 36_[+2(9.64e-05)]_9_[+2(5.02e-05)]_\ 19 chrI:9488267-9488347 7.49e-02 59_[+1(2.85e-05)]_13 chrI:6810535-6810615 7.09e-02 80 chrV:9425787-9425867 9.51e-01 80 chrI:663665-663745 1.50e-02 80 chrX:11553047-11553127 5.22e-04 51_[+1(9.33e-06)]_21 chrIII:4658510-4658590 4.26e-01 80 chrIII:6951609-6951689 1.29e-01 80 chrV:20710277-20710357 7.80e-02 80 chrII:7887468-7887548 7.13e-02 17_[+2(3.15e-05)]_55 chrV:10255168-10255248 6.14e-02 80 chrIII:7375025-7375105 2.15e-02 43_[+3(7.27e-05)]_29 chrX:16339304-16339384 4.31e-04 59_[+2(5.02e-05)]_4_[+2(1.28e-05)]_\ 1 chrII:5272105-5272185 4.58e-02 58_[+5(6.74e-05)]_14 chrIV:12123015-12123095 2.48e-01 80 chrIII:13313944-13314024 1.12e-04 41_[+1(9.33e-06)]_31 chrII:7111167-7111247 1.99e-02 45_[+5(6.74e-05)]_27 chrIII:4612749-4612829 2.02e-03 [+1(9.33e-06)]_72 chrIII:6690664-6690744 3.00e-01 80 chrIV:15984354-15984434 9.33e-03 56_[+1(9.33e-06)]_16 chrIV:9928587-9928667 3.31e-02 30_[+2(7.77e-05)]_42 chrIII:4332690-4332770 2.72e-02 80 chrIII:13456019-13456099 1.07e-01 80 chrIV:9107637-9107717 5.55e-01 80 chrII:6122811-6122891 8.59e-03 29_[+3(1.63e-05)]_43 chrI:10333184-10333264 1.85e-01 80 chrV:6096005-6096085 9.82e-01 80 chrIII:9905555-9905635 3.91e-02 80 chrIV:8143057-8143137 9.43e-01 80 chrV:14684914-14684994 8.34e-02 80 chrI:5618435-5618515 3.28e-02 80 chrI:13289853-13289933 5.60e-01 80 chrX:6250394-6250474 4.53e-01 80 chrI:6434577-6434657 1.78e-01 80 chrIII:4204196-4204276 9.49e-01 80 chrV:12161306-12161386 5.48e-04 22_[+1(9.33e-06)]_37_[+2(7.77e-05)]_\ 5 chrV:14650137-14650217 3.28e-03 80 chrIV:9260461-9260541 2.83e-02 80 chrV:9853956-9854036 3.58e-02 64_[+5(6.74e-05)]_8 chrV:12065476-12065556 1.67e-03 16_[+3(3.04e-05)]_56 chrI:9131984-9132064 2.70e-01 80 chrIII:2578709-2578789 5.59e-01 80 chrV:11993832-11993912 7.36e-01 80 chrIV:6767389-6767469 5.00e-02 34_[+4(5.85e-05)]_38 chrI:7479392-7479472 3.09e-02 80 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************