******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/worm/fasta/RankLinear2.0_40/C04F5.9.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrI:7099719-7099799 1.0000 80 chrI:7098250-7098330 1.0000 80 chrIII:6982107-6982187 1.0000 80 chrIII:11940168-11940248 1.0000 80 chrIII:6982315-6982395 1.0000 80 chrI:9853426-9853506 1.0000 80 chrIII:11939397-11939477 1.0000 80 chrI:5982940-5983020 1.0000 80 chrIII:4752731-4752811 1.0000 80 chrII:10867373-10867453 1.0000 80 chrIV:8236324-8236404 1.0000 80 chrIII:6985282-6985362 1.0000 80 chrIII:8899894-8899974 1.0000 80 chrI:9611623-9611703 1.0000 80 chrIII:6988216-6988296 1.0000 80 chrI:9616381-9616461 1.0000 80 chrIV:1009706-1009786 1.0000 80 chrI:7069281-7069361 1.0000 80 chrII:6928548-6928628 1.0000 80 chrIV:1056623-1056703 1.0000 80 chrI:7090370-7090450 1.0000 80 chrII:8158136-8158216 1.0000 80 chrII:10824215-10824295 1.0000 80 chrI:8696376-8696456 1.0000 80 chrIII:8901261-8901341 1.0000 80 chrIV:2349084-2349164 1.0000 80 chrII:6974148-6974228 1.0000 80 chrIII:6979036-6979116 1.0000 80 chrIII:10357958-10358038 1.0000 80 chrIV:240449-240529 1.0000 80 chrIII:10064294-10064374 1.0000 80 chrIV:1054877-1054957 1.0000 80 chrIII:7858640-7858720 1.0000 80 chrI:8692620-8692700 1.0000 80 chrIII:4720961-4721041 1.0000 80 chrI:10400733-10400813 1.0000 80 chrIII:13187900-13187980 1.0000 80 chrI:11611411-11611491 1.0000 80 chrIV:11315023-11315103 1.0000 80 chrI:15023116-15023196 1.0000 80 chrI:8675492-8675572 1.0000 80 chrIV:519581-519661 1.0000 80 chrI:7094984-7095064 1.0000 80 chrV:11889753-11889833 1.0000 80 chrI:5659120-5659200 1.0000 80 chrIII:12673527-12673607 1.0000 80 chrII:3553580-3553660 1.0000 80 chrIII:6968452-6968532 1.0000 80 chrIV:874781-874861 1.0000 80 chrIV:1177911-1177991 1.0000 80 chrIII:8905277-8905357 1.0000 80 chrI:9150313-9150393 1.0000 80 chrIII:3857214-3857294 1.0000 80 chrI:5281838-5281918 1.0000 80 chrI:323663-323743 1.0000 80 chrIII:6995995-6996075 1.0000 80 chrIII:9465600-9465680 1.0000 80 chrII:8143470-8143550 1.0000 80 chrIV:11592949-11593029 1.0000 80 chrII:9177231-9177311 1.0000 80 chrII:15089582-15089662 1.0000 80 chrI:10622894-10622974 1.0000 80 chrI:10406201-10406281 1.0000 80 chrI:10161983-10162063 1.0000 80 chrII:5544273-5544353 1.0000 80 chrIII:2805227-2805307 1.0000 80 chrX:2688687-2688767 1.0000 80 chrIII:7940982-7941062 1.0000 80 chrIII:4343274-4343354 1.0000 80 chrV:725553-725633 1.0000 80 chrII:3523690-3523770 1.0000 80 chrII:10798649-10798729 1.0000 80 chrV:10320338-10320418 1.0000 80 chrX:7953005-7953085 1.0000 80 chrI:3147824-3147904 1.0000 80 chrI:11416727-11416807 1.0000 80 chrIV:16415738-16415818 1.0000 80 chrI:9581612-9581692 1.0000 80 chrIII:2151615-2151695 1.0000 80 chrII:10538116-10538196 1.0000 80 chrI:8511434-8511514 1.0000 80 chrII:4322998-4323078 1.0000 80 chrII:5511914-5511994 1.0000 80 chrII:10395520-10395600 1.0000 80 chrIV:1108190-1108270 1.0000 80 chrV:177046-177126 1.0000 80 chrIII:11942843-11942923 1.0000 80 chrIII:8332032-8332112 1.0000 80 chrI:10598569-10598649 1.0000 80 chrI:2629397-2629477 1.0000 80 chrIII:4905490-4905570 1.0000 80 chrII:2565050-2565130 1.0000 80 chrII:3682936-3683016 1.0000 80 chrI:6760291-6760371 1.0000 80 chrII:8216556-8216636 1.0000 80 chrIV:7816584-7816664 1.0000 80 chrIII:11112879-11112959 1.0000 80 chrIII:4912479-4912559 1.0000 80 chrIII:2780962-2781042 1.0000 80 chrIII:1558584-1558664 1.0000 80 chrX:2234033-2234113 1.0000 80 chrII:98061-98141 1.0000 80 chrI:1340089-1340169 1.0000 80 chrV:2127172-2127252 1.0000 80 chrIII:12273755-12273835 1.0000 80 chrI:7283808-7283888 1.0000 80 chrI:10192894-10192974 1.0000 80 chrII:13369387-13369467 1.0000 80 chrX:6743059-6743139 1.0000 80 chrV:729274-729354 1.0000 80 chrIII:12152331-12152411 1.0000 80 chrII:506194-506274 1.0000 80 chrIII:8144716-8144796 1.0000 80 chrII:7836754-7836834 1.0000 80 chrII:4999315-4999395 1.0000 80 chrIII:1037327-1037407 1.0000 80 chrII:10862954-10863034 1.0000 80 chrIV:261731-261811 1.0000 80 chrI:8970172-8970252 1.0000 80 chrI:10591702-10591782 1.0000 80 chrIV:658134-658214 1.0000 80 chrV:15082467-15082547 1.0000 80 chrII:8745713-8745793 1.0000 80 chrI:10435805-10435885 1.0000 80 chrI:11893900-11893980 1.0000 80 chrIII:12218791-12218871 1.0000 80 chrIV:1953372-1953452 1.0000 80 chrIV:12209114-12209194 1.0000 80 chrIII:10507017-10507097 1.0000 80 chrIII:8850788-8850868 1.0000 80 chrIV:6631979-6632059 1.0000 80 chrIII:4587283-4587363 1.0000 80 chrII:2995123-2995203 1.0000 80 chrII:4048011-4048091 1.0000 80 chrV:727964-728044 1.0000 80 chrII:3482372-3482452 1.0000 80 chrI:10330558-10330638 1.0000 80 chrII:6097614-6097694 1.0000 80 chrII:13083911-13083991 1.0000 80 chrIII:9393494-9393574 1.0000 80 chrII:2479160-2479240 1.0000 80 chrIII:6116629-6116709 1.0000 80 chrII:7022733-7022813 1.0000 80 chrII:5819826-5819906 1.0000 80 chrII:6967731-6967811 1.0000 80 chrIII:6897752-6897832 1.0000 80 chrIII:7234299-7234379 1.0000 80 chrIII:13307271-13307351 1.0000 80 chrI:9609680-9609760 1.0000 80 chrV:5844566-5844646 1.0000 80 chrI:1034365-1034445 1.0000 80 chrII:2504572-2504652 1.0000 80 chrIII:11290670-11290750 1.0000 80 chrIII:8847860-8847940 1.0000 80 chrII:7301838-7301918 1.0000 80 chrII:10200910-10200990 1.0000 80 chrV:1196129-1196209 1.0000 80 chrIII:8889107-8889187 1.0000 80 chrIII:9406734-9406814 1.0000 80 chrI:6011895-6011975 1.0000 80 chrIV:1239885-1239965 1.0000 80 chrIV:11068396-11068476 1.0000 80 chrI:7082153-7082233 1.0000 80 chrI:13421198-13421278 1.0000 80 chrII:12459616-12459696 1.0000 80 chrV:730424-730504 1.0000 80 chrI:10518058-10518138 1.0000 80 chrIII:7021411-7021491 1.0000 80 chrX:13969281-13969361 1.0000 80 chrIII:10505355-10505435 1.0000 80 chrIII:11063439-11063519 1.0000 80 chrI:9934492-9934572 1.0000 80 chrII:9262291-9262371 1.0000 80 chrIII:12685947-12686027 1.0000 80 chrIV:3313519-3313599 1.0000 80 chrI:4247572-4247652 1.0000 80 chrII:8086958-8087038 1.0000 80 chrIV:12078988-12079068 1.0000 80 chrX:2687295-2687375 1.0000 80 chrII:3054762-3054842 1.0000 80 chrIII:8529056-8529136 1.0000 80 chrIII:8956407-8956487 1.0000 80 chrIII:7277426-7277506 1.0000 80 chrIV:11571555-11571635 1.0000 80 chrII:8162401-8162481 1.0000 80 chrI:6314869-6314949 1.0000 80 chrIII:4269694-4269774 1.0000 80 chrII:7945295-7945375 1.0000 80 chrIV:3803399-3803479 1.0000 80 chrII:1402327-1402407 1.0000 80 chrIV:9670113-9670193 1.0000 80 chrV:12041274-12041354 1.0000 80 chrV:2008497-2008577 1.0000 80 chrIV:11480592-11480672 1.0000 80 chrIV:11433905-11433985 1.0000 80 chrI:14756500-14756580 1.0000 80 chrII:4603196-4603276 1.0000 80 chrIV:5160354-5160434 1.0000 80 chrI:12532226-12532306 1.0000 80 chrI:6407330-6407410 1.0000 80 chrII:13117277-13117357 1.0000 80 chrI:14788005-14788085 1.0000 80 chrIII:9808324-9808404 1.0000 80 chrI:6215536-6215616 1.0000 80 chrI:5261749-5261829 1.0000 80 chrIII:8085491-8085571 1.0000 80 chrIII:11526549-11526629 1.0000 80 chrI:3037921-3038001 1.0000 80 chrIII:7088112-7088192 1.0000 80 chrIII:9868261-9868341 1.0000 80 chrX:3379191-3379271 1.0000 80 chrIV:3694807-3694887 1.0000 80 chrIII:5871909-5871989 1.0000 80 chrII:12778528-12778608 1.0000 80 chrII:6601169-6601249 1.0000 80 chrII:347841-347921 1.0000 80 chrX:3839423-3839503 1.0000 80 chrI:10437962-10438042 1.0000 80 chrII:9975089-9975169 1.0000 80 chrII:3808277-3808357 1.0000 80 chrI:3032880-3032960 1.0000 80 chrII:13908695-13908775 1.0000 80 chrI:4769652-4769732 1.0000 80 chrIII:11110893-11110973 1.0000 80 chrIV:2220272-2220352 1.0000 80 chrIV:8973705-8973785 1.0000 80 chrX:7569879-7569959 1.0000 80 chrI:7961895-7961975 1.0000 80 chrI:10178384-10178464 1.0000 80 chrV:6226098-6226178 1.0000 80 chrIV:4171930-4172010 1.0000 80 chrI:3438927-3439007 1.0000 80 chrIII:6278749-6278829 1.0000 80 chrIII:4878516-4878596 1.0000 80 chrV:18981149-18981229 1.0000 80 chrIV:6415396-6415476 1.0000 80 chrIII:2331315-2331395 1.0000 80 chrV:10736901-10736981 1.0000 80 chrI:2901088-2901168 1.0000 80 chrIII:3510252-3510332 1.0000 80 chrIV:16995561-16995641 1.0000 80 chrIV:4720717-4720797 1.0000 80 chrI:9962061-9962141 1.0000 80 chrIV:14612481-14612561 1.0000 80 chrIV:13098853-13098933 1.0000 80 chrI:5106196-5106276 1.0000 80 chrIII:8971770-8971850 1.0000 80 chrV:126766-126846 1.0000 80 chrIII:5722044-5722124 1.0000 80 chrX:17151354-17151434 1.0000 80 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/worm/inference_raw/MEME/RankLinear2.0_40_C04F5.9/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/worm/fasta/RankLinear2.0_40/C04F5.9.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 20000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 20000 norand= no csites= 1000 Letter frequencies in dataset: A 0.279 C 0.221 G 0.217 T 0.283 Background letter frequencies (from file dataset with add-one prior applied): A 0.279 C 0.221 G 0.217 T 0.283 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF AARYGCGC MEME-1 width = 8 sites = 58 llr = 476 E-value = 4.9e-022 ******************************************************************************** -------------------------------------------------------------------------------- Motif AARYGCGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A 775::::: pos.-specific C :2:6:8:a probability G 315:a:a: matrix T :::4:2:: bits 2.2 * ** 2.0 * ** 1.8 * ** 1.5 * ** Relative 1.3 **** Entropy 1.1 * ****** (11.8 bits) 0.9 * ****** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAACGCGC consensus GCGT T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AARYGCGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIV:4171930-4172010 36 8.59e-06 GCCGAACAAC AAGCGCGC TCTACTGCAC chrIV:3694807-3694887 26 8.59e-06 GTAAAAATGC AAGCGCGC TCTACCGCAC chrIII:8956407-8956487 9 8.59e-06 AGAGAAAA AAGCGCGC GCACTCACGC chrIII:8971770-8971850 51 1.96e-05 AAGGTACACG AAACGCGC CAACATTCGC chrI:6407330-6407410 72 1.96e-05 GTCTCTGTGC AAACGCGC T chrIV:11433905-11433985 20 1.96e-05 AGTGCACGAG AAACGCGC CAATGGTTCG chrII:1402327-1402407 30 1.96e-05 CACTAACGCA AAACGCGC CAGCAGCCAC chrX:2687295-2687375 24 1.96e-05 CATGCACGAG AAACGCGC CAGCAATCGA chrIII:7021411-7021491 62 1.96e-05 CGCTATTCCG AAACGCGC GTTGTTCACC chrIII:7234299-7234379 49 1.96e-05 GGTGCACGAG AAACGCGC CAACGATGAA chrIV:261731-261811 57 1.96e-05 TTATTAATGC AAACGCGC CCCATTGCAA chrIV:2349084-2349164 11 1.96e-05 GCACGTCAAG AAACGCGC CAGCAGACTT chrII:7022733-7022813 12 3.06e-05 CGTCATCAAA AAGTGCGC CAGCACGATT chrII:3482372-3482452 40 3.06e-05 CATGTGGTGC AAGTGCGC TCTGTTGCGG chrII:98061-98141 13 3.06e-05 ACGGTAAACA AAGTGCGC ATGCGTAATT chrI:9616381-9616461 28 3.06e-05 ATGGTTTCGC AAGTGCGC CCCATTGTGA chrIII:11110893-11110973 42 4.48e-05 CCTGCGCGTG AAATGCGC CGAGAGACGG chrV:2008497-2008577 41 4.48e-05 tcgtcaaatt aaatgcgc gtacgcaaag chrV:12041274-12041354 40 4.48e-05 TCGCTACCCA AAATGCGC GGCAAAACAA chrIII:10507017-10507097 21 4.48e-05 ATTGCACGCA AAATGCGC CAGTGTACAC chrIV:5160354-5160434 31 5.82e-05 CTTGTCAATG GAGCGCGC TTACGCAGCT chrII:3054762-3054842 63 5.82e-05 TGTGTTGTGT ACGCGCGC GCACGCACAC chrII:12459616-12459696 49 5.82e-05 CATGACCGTG GAGCGCGC TTGCATTTTT chrII:2504572-2504652 58 5.82e-05 CGTGCCAATG GAGCGCGC TTTCAATTTT chrV:177046-177126 30 5.82e-05 AACGCACGAG GAGCGCGC CAGCAAACCC chrIII:7940982-7941062 66 5.82e-05 CGCGCGCCTC ACGCGCGC AGTTTGA chrII:6967731-6967811 44 7.56e-05 GGGCTAAACA ACACGCGC ATGCGTTATT chrIV:6631979-6632059 6 7.56e-05 TTTGA ACACGCGC GCTTTTTCTT chrIV:1953372-1953452 55 7.56e-05 CCGCTAAACA ACACGCGC CATCGGGATT chrI:10591702-10591782 22 7.56e-05 CGAGAGGAGT ACACGCGC GAGTGCACTG chrIII:1037327-1037407 31 7.56e-05 AGCGATCGAG ACACGCGC CAGCAAAATT chrI:10161983-10162063 28 7.56e-05 GGCCGTGGCC GAACGCGC TGTCAAACTT chrII:3808277-3808357 40 9.28e-05 TTTTTGCAAG ACGTGCGC GCGGAGTTTC chrII:8086958-8087038 48 9.28e-05 ATGGTTGTTG ACGTGCGC ACCGCATTGA chrI:3438927-3439007 31 1.15e-04 TGAAGTCCGT GAATGCGC GTGCGGTGCA chrI:3032880-3032960 30 1.15e-04 ACGAGACGAA GAATGCGC CAGCAGGCGT chrIII:7277426-7277506 6 1.15e-04 acatc acatgcgc ggtttttcga chrII:347841-347921 26 1.45e-04 GTTATAAACA AGGCGCGC CTGCGGGATT chrI:10330558-10330638 24 1.45e-04 TCTCACTCAA AGGCGCGC GTATTTTCGC chrIII:8889107-8889187 20 1.67e-04 GTGCAACGAA AAACGTGC AATTCGTCGT chrI:323663-323743 15 1.67e-04 TTTTTCAGCA AAACGTGC ATAAAAAAAT chrII:10824215-10824295 52 1.67e-04 ACTTCTCAAA AGACGCGC CAAAAAACAT chrII:8158136-8158216 16 1.67e-04 AAATGGCACA AAACGTGC GTCAGCAAAG chrIII:2151615-2151695 60 1.74e-04 ACGTGATTTT GCGTGCGC GTGTCTGCGG chrV:15082467-15082547 43 2.06e-04 ATTCTAGGCC GCATGCGC AGAAGTTAGG chrI:11416727-11416807 28 2.06e-04 TTTTAGCAGT GCATGCGC GCTCTATTGA chrI:3147824-3147904 55 2.06e-04 AAAAAATACG AAGTGTGC AGTTTGCCGT chrIII:11939397-11939477 2 2.06e-04 C AAGTGTGC GGAGAAATGA chrIII:6982107-6982187 46 2.06e-04 TTTGCAATGC AAGTGTGC GGAGAAATGA chrII:7301838-7301918 13 2.35e-04 CAAGCACTAG AGATGCGC CAGCACGCCG chrIII:8144716-8144796 17 2.35e-04 GGGTGAACAA AAATGTGC GCGTGAGTAT chrI:10437962-10438042 63 2.57e-04 GATCGGTGCG ACGCGTGC GGTGCGGCGT chrIV:519581-519661 8 2.57e-04 AGCAGTA GGGCGCGC TTGCATCCGT chrIV:1054877-1054957 57 2.57e-04 ACGGTAAACA GGGCGCGC TGCGGGATTT chrX:17151354-17151434 5 3.15e-04 CAAG GAGTGTGC AGACAGTGTG chrIII:8850788-8850868 10 3.15e-04 GATTGTAGA GAGTGTGC ACGCAAAGAG chrIII:11112879-11112959 13 3.15e-04 AAAAGTGAGA GAGTGTGC GCTTTTCTCG chrI:10435805-10435885 43 3.52e-04 AGGGAGGAGG GAATGTGC CGATGGGTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AARYGCGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIV:4171930-4172010 8.6e-06 35_[+1]_37 chrIV:3694807-3694887 8.6e-06 25_[+1]_47 chrIII:8956407-8956487 8.6e-06 8_[+1]_64 chrIII:8971770-8971850 2e-05 50_[+1]_22 chrI:6407330-6407410 2e-05 71_[+1]_1 chrIV:11433905-11433985 2e-05 19_[+1]_53 chrII:1402327-1402407 2e-05 29_[+1]_43 chrX:2687295-2687375 2e-05 23_[+1]_49 chrIII:7021411-7021491 2e-05 61_[+1]_11 chrIII:7234299-7234379 2e-05 48_[+1]_24 chrIV:261731-261811 2e-05 56_[+1]_16 chrIV:2349084-2349164 2e-05 10_[+1]_62 chrII:7022733-7022813 3.1e-05 11_[+1]_61 chrII:3482372-3482452 3.1e-05 39_[+1]_33 chrII:98061-98141 3.1e-05 12_[+1]_60 chrI:9616381-9616461 3.1e-05 27_[+1]_45 chrIII:11110893-11110973 4.5e-05 41_[+1]_31 chrV:2008497-2008577 4.5e-05 40_[+1]_32 chrV:12041274-12041354 4.5e-05 39_[+1]_33 chrIII:10507017-10507097 4.5e-05 20_[+1]_52 chrIV:5160354-5160434 5.8e-05 30_[+1]_42 chrII:3054762-3054842 5.8e-05 62_[+1]_10 chrII:12459616-12459696 5.8e-05 48_[+1]_24 chrII:2504572-2504652 5.8e-05 57_[+1]_15 chrV:177046-177126 5.8e-05 29_[+1]_43 chrIII:7940982-7941062 5.8e-05 65_[+1]_7 chrII:6967731-6967811 7.6e-05 43_[+1]_29 chrIV:6631979-6632059 7.6e-05 5_[+1]_67 chrIV:1953372-1953452 7.6e-05 54_[+1]_18 chrI:10591702-10591782 7.6e-05 21_[+1]_51 chrIII:1037327-1037407 7.6e-05 30_[+1]_42 chrI:10161983-10162063 7.6e-05 27_[+1]_45 chrII:3808277-3808357 9.3e-05 39_[+1]_33 chrII:8086958-8087038 9.3e-05 47_[+1]_25 chrI:3438927-3439007 0.00012 30_[+1]_42 chrI:3032880-3032960 0.00012 29_[+1]_43 chrIII:7277426-7277506 0.00012 5_[+1]_67 chrII:347841-347921 0.00014 25_[+1]_47 chrI:10330558-10330638 0.00014 23_[+1]_49 chrIII:8889107-8889187 0.00017 19_[+1]_53 chrI:323663-323743 0.00017 14_[+1]_58 chrII:10824215-10824295 0.00017 51_[+1]_21 chrII:8158136-8158216 0.00017 15_[+1]_57 chrIII:2151615-2151695 0.00017 59_[+1]_13 chrV:15082467-15082547 0.00021 42_[+1]_30 chrI:11416727-11416807 0.00021 27_[+1]_45 chrI:3147824-3147904 0.00021 54_[+1]_18 chrIII:11939397-11939477 0.00021 1_[+1]_71 chrIII:6982107-6982187 0.00021 45_[+1]_27 chrII:7301838-7301918 0.00023 12_[+1]_60 chrIII:8144716-8144796 0.00023 16_[+1]_56 chrI:10437962-10438042 0.00026 62_[+1]_10 chrIV:519581-519661 0.00026 7_[+1]_65 chrIV:1054877-1054957 0.00026 56_[+1]_16 chrX:17151354-17151434 0.00031 4_[+1]_68 chrIII:8850788-8850868 0.00031 9_[+1]_63 chrIII:11112879-11112959 0.00031 12_[+1]_60 chrI:10435805-10435885 0.00035 42_[+1]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AARYGCGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AARYGCGC width=8 seqs=58 chrIV:4171930-4172010 ( 36) AAGCGCGC 1 chrIV:3694807-3694887 ( 26) AAGCGCGC 1 chrIII:8956407-8956487 ( 9) AAGCGCGC 1 chrIII:8971770-8971850 ( 51) AAACGCGC 1 chrI:6407330-6407410 ( 72) AAACGCGC 1 chrIV:11433905-11433985 ( 20) AAACGCGC 1 chrII:1402327-1402407 ( 30) AAACGCGC 1 chrX:2687295-2687375 ( 24) AAACGCGC 1 chrIII:7021411-7021491 ( 62) AAACGCGC 1 chrIII:7234299-7234379 ( 49) AAACGCGC 1 chrIV:261731-261811 ( 57) AAACGCGC 1 chrIV:2349084-2349164 ( 11) AAACGCGC 1 chrII:7022733-7022813 ( 12) AAGTGCGC 1 chrII:3482372-3482452 ( 40) AAGTGCGC 1 chrII:98061-98141 ( 13) AAGTGCGC 1 chrI:9616381-9616461 ( 28) AAGTGCGC 1 chrIII:11110893-11110973 ( 42) AAATGCGC 1 chrV:2008497-2008577 ( 41) AAATGCGC 1 chrV:12041274-12041354 ( 40) AAATGCGC 1 chrIII:10507017-10507097 ( 21) AAATGCGC 1 chrIV:5160354-5160434 ( 31) GAGCGCGC 1 chrII:3054762-3054842 ( 63) ACGCGCGC 1 chrII:12459616-12459696 ( 49) GAGCGCGC 1 chrII:2504572-2504652 ( 58) GAGCGCGC 1 chrV:177046-177126 ( 30) GAGCGCGC 1 chrIII:7940982-7941062 ( 66) ACGCGCGC 1 chrII:6967731-6967811 ( 44) ACACGCGC 1 chrIV:6631979-6632059 ( 6) ACACGCGC 1 chrIV:1953372-1953452 ( 55) ACACGCGC 1 chrI:10591702-10591782 ( 22) ACACGCGC 1 chrIII:1037327-1037407 ( 31) ACACGCGC 1 chrI:10161983-10162063 ( 28) GAACGCGC 1 chrII:3808277-3808357 ( 40) ACGTGCGC 1 chrII:8086958-8087038 ( 48) ACGTGCGC 1 chrI:3438927-3439007 ( 31) GAATGCGC 1 chrI:3032880-3032960 ( 30) GAATGCGC 1 chrIII:7277426-7277506 ( 6) ACATGCGC 1 chrII:347841-347921 ( 26) AGGCGCGC 1 chrI:10330558-10330638 ( 24) AGGCGCGC 1 chrIII:8889107-8889187 ( 20) AAACGTGC 1 chrI:323663-323743 ( 15) AAACGTGC 1 chrII:10824215-10824295 ( 52) AGACGCGC 1 chrII:8158136-8158216 ( 16) AAACGTGC 1 chrIII:2151615-2151695 ( 60) GCGTGCGC 1 chrV:15082467-15082547 ( 43) GCATGCGC 1 chrI:11416727-11416807 ( 28) GCATGCGC 1 chrI:3147824-3147904 ( 55) AAGTGTGC 1 chrIII:11939397-11939477 ( 2) AAGTGTGC 1 chrIII:6982107-6982187 ( 46) AAGTGTGC 1 chrII:7301838-7301918 ( 13) AGATGCGC 1 chrIII:8144716-8144796 ( 17) AAATGTGC 1 chrI:10437962-10438042 ( 63) ACGCGTGC 1 chrIV:519581-519661 ( 8) GGGCGCGC 1 chrIV:1054877-1054957 ( 57) GGGCGCGC 1 chrX:17151354-17151434 ( 5) GAGTGTGC 1 chrIII:8850788-8850868 ( 10) GAGTGTGC 1 chrIII:11112879-11112959 ( 13) GAGTGTGC 1 chrI:10435805-10435885 ( 43) GAATGTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AARYGCGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.4321 E= 4.9e-022 137 -1250 35 -1250 123 13 -107 -1250 94 -1250 110 -1250 -1250 136 -1250 61 -1250 -1250 221 -1250 -1250 184 -1250 -45 -1250 -1250 221 -1250 -1250 218 -1250 -1250 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AARYGCGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 4.9e-022 0.724138 0.000000 0.275862 0.000000 0.655172 0.241379 0.103448 0.000000 0.534483 0.000000 0.465517 0.000000 0.000000 0.568966 0.000000 0.431034 0.000000 0.000000 1.000000 0.000000 0.000000 0.793103 0.000000 0.206897 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AARYGCGC MEME-1 regular expression -------------------------------------------------------------------------------- [AG][AC][AG][CT]G[CT]GC -------------------------------------------------------------------------------- Time 9.34 secs. ******************************************************************************** ******************************************************************************** MOTIF YGGCCGYG MEME-2 width = 8 sites = 54 llr = 437 E-value = 3.8e-016 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGGCCGYG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::21: pos.-specific C 621a9:4: probability G 179::8:a matrix T 41::::5: bits 2.2 * 2.0 * * 1.8 *** * 1.5 *** * Relative 1.3 **** * Entropy 1.1 ***** * (11.7 bits) 0.9 ***** * 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGGCCGTG consensus TC AC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCGYG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrI:4247572-4247652 35 5.29e-06 CTAGGCCACG CGGCCGCG TACTCCTCGA chrI:5106196-5106276 14 1.21e-05 TTGTATTTCT CGGCCGTG GCCGAACTTA chrIV:8973705-8973785 37 1.21e-05 CTAGTCCGCG CGGCCGTG TAGTCCTCTT chrII:3054762-3054842 47 1.21e-05 CGGTTGAAGA CGGCCGTG TGTTGTGTAC chrIV:6631979-6632059 28 1.21e-05 TTTCTTCGGT CGGCCGTG GGTCGCGAAT chrI:10192894-10192974 40 1.21e-05 GTGTACGACA CGGCCGTG GCCTAGAATT chrV:2127172-2127252 60 1.21e-05 CTAGTCCTCC CGGCCGTG TACTTCACGT chrIII:4912479-4912559 50 1.21e-05 TTCGGATTCT CGGCCGTG GCCTAGAATA chrII:10395520-10395600 50 1.21e-05 AGAAAAACTT CGGCCGTG TAGTCCTCTC chrII:10538116-10538196 35 1.21e-05 AATTATTTCT CGGCCGTG TACTCCTCTC chrII:15089582-15089662 37 1.21e-05 CTAGGCCACG CGGCCGTG TAGTCCTCCT chrIV:11315023-11315103 64 1.21e-05 GAATTTCGTG CGGCCGTG GCTGAGTTT chrII:3482372-3482452 2 1.88e-05 G TGGCCGCG GCCTAAGAAC chrII:10200910-10200990 33 2.75e-05 TGGTGGCCGA TGGCCGTG GCCTAGGAAA chrI:10161983-10162063 17 2.75e-05 TTTTCGCTAG TGGCCGTG GCCGAACGCG chrIII:10064294-10064374 32 2.75e-05 CTGGCCGAGG TGGCCGTG GCCTAGAAGT chrI:5982940-5983020 13 3.29e-05 CGAATGGGTC CCGCCGCG ATTGTCCATT chrIII:5871909-5871989 35 4.65e-05 GAGGAGTGCA CGGCCGAG AAAAGTCCAA chrII:6097614-6097694 28 4.65e-05 GAGGAGTACA CGGCCGAG CATGCTCCGC chrIV:16415738-16415818 45 4.65e-05 GAGGAGTACA CGGCCGAG TGGCCTAGGA chrIV:16995561-16995641 53 5.33e-05 TCCTCTTCCA CGGCCACG CGGCCCCCAC chrI:8970172-8970252 7 5.33e-05 CAAACA CGGCCACG CGAAAATGCG chrIII:4905490-4905570 5 5.33e-05 GACT CGGCCACG AATTGGGTAC chrV:10320338-10320418 18 5.33e-05 AACTAGGCCA CGGCCACG CGTTCTCTCG chrI:5281838-5281918 5 5.33e-05 TTCT CGGCCACG GCCATCAGTT chrIII:8529056-8529136 58 6.20e-05 CTCTTTTACT CGGCCATG GCATACATTA chrIV:11592949-11593029 55 6.20e-05 TGCTAGTCCG CGGCCATG ACTAATCAGA chrIII:11063439-11063519 53 7.41e-05 caCACTGGCG TCGCCGCG AAAATATTCT chrII:4322998-4323078 48 7.41e-05 GTGTGCAGTT TCGCCGCG CGGTGTTTGC chrIII:11940168-11940248 32 7.41e-05 ACAGTGGGTC TCGCCGCG ATTTGCCGCC chrI:7099719-7099799 16 7.41e-05 ACAGCGGGTC TCGCCGCG ATTTGCCGCC chrI:4769652-4769732 48 8.96e-05 accccccgcc gggccgtg GGTCGAGCTG chrIV:3313519-3313599 48 8.96e-05 acggttcgcc gggccgtg ttagtgcaat chrIII:11290670-11290750 65 9.81e-05 ACACACCGGG TGGCCGAG TGGGGATT chrI:6760291-6760371 28 9.81e-05 AGTTTCCACA TGGCCGAG CTATCTCGTG chrIII:12673527-12673607 39 9.81e-05 CACGGCGTGG TGGCCGAG ACCCCGACTC chrIII:6995995-6996075 62 1.23e-04 AGGTGCTTAG CGCCCGCG GGAGGTAACC chrIII:3510252-3510332 55 1.30e-04 TCACATTGGC CGCCCGTG GAATCGCCAA chrII:6601169-6601249 27 1.60e-04 GTCAAGTATG CTGCCGTG TCTGCATGCA chrI:15023116-15023196 30 1.60e-04 CTGCAGAGCT CCGCCACG CATATCTTTT chrIV:4171930-4172010 1 1.84e-04 . TGCCCGCG GCCTAGAAAC chrII:4603196-4603276 65 1.84e-04 CGGCCGCAGT TGCCCGCG AACTTTTG chrIV:3694807-3694887 51 1.98e-04 CACACGCGCT GCGCCGCG AAGCGTGTCT chrIII:13307271-13307351 6 1.98e-04 ATTTC GCGCCGCG AGTGTATTTA chrIV:4720717-4720797 58 2.44e-04 TGGACTGGAC TTGCCGCG TTATTCAAAT chrII:8143470-8143550 11 2.44e-04 AGTTCACCGA CGGCAGTG AACATTAGTG chrIII:6116629-6116709 18 2.78e-04 ATTCTGCAAT TTGCCGTG TTAGTGTTTG chrI:10435805-10435885 60 2.78e-04 CCGATGGGTC TCGCCACG AAATGCATCG chrIII:8899894-8899974 6 2.78e-04 GGGTC TCGCCACG ATTCCTCCTA chrI:9853426-9853506 31 2.78e-04 TGATAAGGTC TCGCCACG ATGCGCCAGA chrIII:11112879-11112959 37 3.06e-04 CTCGTGCGGG AGGCCGTG CATgaaaaca chrIII:5722044-5722124 20 3.94e-04 TCTAGGCCAC CGGCTGTG TACTCCTCTC chrIII:4269694-4269774 1 3.94e-04 . CGGTCGCG CGCCAACAGC chrX:2688687-2688767 57 3.94e-04 CGAAGCGATG TGGCAGTG AGAGTGGGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCGYG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:4247572-4247652 5.3e-06 34_[+2]_38 chrI:5106196-5106276 1.2e-05 13_[+2]_59 chrIV:8973705-8973785 1.2e-05 36_[+2]_36 chrII:3054762-3054842 1.2e-05 46_[+2]_26 chrIV:6631979-6632059 1.2e-05 27_[+2]_45 chrI:10192894-10192974 1.2e-05 39_[+2]_33 chrV:2127172-2127252 1.2e-05 59_[+2]_13 chrIII:4912479-4912559 1.2e-05 49_[+2]_23 chrII:10395520-10395600 1.2e-05 49_[+2]_23 chrII:10538116-10538196 1.2e-05 34_[+2]_38 chrII:15089582-15089662 1.2e-05 36_[+2]_36 chrIV:11315023-11315103 1.2e-05 63_[+2]_9 chrII:3482372-3482452 1.9e-05 1_[+2]_71 chrII:10200910-10200990 2.8e-05 32_[+2]_40 chrI:10161983-10162063 2.8e-05 16_[+2]_56 chrIII:10064294-10064374 2.8e-05 31_[+2]_41 chrI:5982940-5983020 3.3e-05 12_[+2]_60 chrIII:5871909-5871989 4.6e-05 34_[+2]_38 chrII:6097614-6097694 4.6e-05 27_[+2]_45 chrIV:16415738-16415818 4.6e-05 44_[+2]_28 chrIV:16995561-16995641 5.3e-05 52_[+2]_20 chrI:8970172-8970252 5.3e-05 6_[+2]_66 chrIII:4905490-4905570 5.3e-05 4_[+2]_68 chrV:10320338-10320418 5.3e-05 17_[+2]_55 chrI:5281838-5281918 5.3e-05 4_[+2]_68 chrIII:8529056-8529136 6.2e-05 57_[+2]_15 chrIV:11592949-11593029 6.2e-05 54_[+2]_18 chrIII:11063439-11063519 7.4e-05 52_[+2]_20 chrII:4322998-4323078 7.4e-05 47_[+2]_25 chrIII:11940168-11940248 7.4e-05 31_[+2]_41 chrI:7099719-7099799 7.4e-05 15_[+2]_57 chrI:4769652-4769732 9e-05 47_[+2]_25 chrIV:3313519-3313599 9e-05 47_[+2]_25 chrIII:11290670-11290750 9.8e-05 64_[+2]_8 chrI:6760291-6760371 9.8e-05 27_[+2]_45 chrIII:12673527-12673607 9.8e-05 38_[+2]_34 chrIII:6995995-6996075 0.00012 61_[+2]_11 chrIII:3510252-3510332 0.00013 54_[+2]_18 chrII:6601169-6601249 0.00016 26_[+2]_46 chrI:15023116-15023196 0.00016 29_[+2]_43 chrIV:4171930-4172010 0.00018 [+2]_72 chrII:4603196-4603276 0.00018 64_[+2]_8 chrIV:3694807-3694887 0.0002 50_[+2]_22 chrIII:13307271-13307351 0.0002 5_[+2]_67 chrIV:4720717-4720797 0.00024 57_[+2]_15 chrII:8143470-8143550 0.00024 10_[+2]_62 chrIII:6116629-6116709 0.00028 17_[+2]_55 chrI:10435805-10435885 0.00028 59_[+2]_13 chrIII:8899894-8899974 0.00028 5_[+2]_67 chrI:9853426-9853506 0.00028 30_[+2]_42 chrIII:11112879-11112959 0.00031 36_[+2]_36 chrIII:5722044-5722124 0.00039 19_[+2]_53 chrIII:4269694-4269774 0.00039 [+2]_72 chrX:2688687-2688767 0.00039 56_[+2]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCGYG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGGCCGYG width=8 seqs=54 chrI:4247572-4247652 ( 35) CGGCCGCG 1 chrI:5106196-5106276 ( 14) CGGCCGTG 1 chrIV:8973705-8973785 ( 37) CGGCCGTG 1 chrII:3054762-3054842 ( 47) CGGCCGTG 1 chrIV:6631979-6632059 ( 28) CGGCCGTG 1 chrI:10192894-10192974 ( 40) CGGCCGTG 1 chrV:2127172-2127252 ( 60) CGGCCGTG 1 chrIII:4912479-4912559 ( 50) CGGCCGTG 1 chrII:10395520-10395600 ( 50) CGGCCGTG 1 chrII:10538116-10538196 ( 35) CGGCCGTG 1 chrII:15089582-15089662 ( 37) CGGCCGTG 1 chrIV:11315023-11315103 ( 64) CGGCCGTG 1 chrII:3482372-3482452 ( 2) TGGCCGCG 1 chrII:10200910-10200990 ( 33) TGGCCGTG 1 chrI:10161983-10162063 ( 17) TGGCCGTG 1 chrIII:10064294-10064374 ( 32) TGGCCGTG 1 chrI:5982940-5983020 ( 13) CCGCCGCG 1 chrIII:5871909-5871989 ( 35) CGGCCGAG 1 chrII:6097614-6097694 ( 28) CGGCCGAG 1 chrIV:16415738-16415818 ( 45) CGGCCGAG 1 chrIV:16995561-16995641 ( 53) CGGCCACG 1 chrI:8970172-8970252 ( 7) CGGCCACG 1 chrIII:4905490-4905570 ( 5) CGGCCACG 1 chrV:10320338-10320418 ( 18) CGGCCACG 1 chrI:5281838-5281918 ( 5) CGGCCACG 1 chrIII:8529056-8529136 ( 58) CGGCCATG 1 chrIV:11592949-11593029 ( 55) CGGCCATG 1 chrIII:11063439-11063519 ( 53) TCGCCGCG 1 chrII:4322998-4323078 ( 48) TCGCCGCG 1 chrIII:11940168-11940248 ( 32) TCGCCGCG 1 chrI:7099719-7099799 ( 16) TCGCCGCG 1 chrI:4769652-4769732 ( 48) GGGCCGTG 1 chrIV:3313519-3313599 ( 48) GGGCCGTG 1 chrIII:11290670-11290750 ( 65) TGGCCGAG 1 chrI:6760291-6760371 ( 28) TGGCCGAG 1 chrIII:12673527-12673607 ( 39) TGGCCGAG 1 chrIII:6995995-6996075 ( 62) CGCCCGCG 1 chrIII:3510252-3510332 ( 55) CGCCCGTG 1 chrII:6601169-6601249 ( 27) CTGCCGTG 1 chrI:15023116-15023196 ( 30) CCGCCACG 1 chrIV:4171930-4172010 ( 1) TGCCCGCG 1 chrII:4603196-4603276 ( 65) TGCCCGCG 1 chrIV:3694807-3694887 ( 51) GCGCCGCG 1 chrIII:13307271-13307351 ( 6) GCGCCGCG 1 chrIV:4720717-4720797 ( 58) TTGCCGCG 1 chrII:8143470-8143550 ( 11) CGGCAGTG 1 chrIII:6116629-6116709 ( 18) TTGCCGTG 1 chrI:10435805-10435885 ( 60) TCGCCACG 1 chrIII:8899894-8899974 ( 6) TCGCCACG 1 chrI:9853426-9853506 ( 31) TCGCCACG 1 chrIII:11112879-11112959 ( 37) AGGCCGTG 1 chrIII:5722044-5722124 ( 20) CGGCTGTG 1 chrIII:4269694-4269774 ( 1) CGGTCGCG 1 chrX:2688687-2688767 ( 57) TGGCAGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCGYG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 8.96686 E= 3.8e-016 -391 133 -155 31 -1240 -12 177 -235 -1240 -158 210 -1240 -1240 215 -1240 -393 -291 210 -1240 -393 -45 -1240 188 -1240 -133 95 -1240 71 -1240 -1240 221 -1240 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCGYG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 54 E= 3.8e-016 0.018519 0.555556 0.074074 0.351852 0.000000 0.203704 0.740741 0.055556 0.000000 0.074074 0.925926 0.000000 0.000000 0.981481 0.000000 0.018519 0.037037 0.944444 0.000000 0.018519 0.203704 0.000000 0.796296 0.000000 0.111111 0.425926 0.000000 0.462963 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGGCCGYG MEME-2 regular expression -------------------------------------------------------------------------------- [CT][GC]GCC[GA][TC]G -------------------------------------------------------------------------------- Time 13.89 secs. ******************************************************************************** ******************************************************************************** MOTIF GCAAACAC MEME-3 width = 8 sites = 24 llr = 242 E-value = 5.4e-013 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAAACAC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :1aaa:9: pos.-specific C :8:::a:a probability G a::::::: matrix T :::::::: bits 2.2 * * * 2.0 * * * 1.8 * * ** * 1.5 * **** * Relative 1.3 ******** Entropy 1.1 ******** (14.6 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCAAACAC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:17151354-17151434 22 1.42e-05 CAGACAGTGT GCAAACAC CATCACGGCA chrIV:13098853-13098933 36 1.42e-05 TTAAACTTCC GCAAACAC CGTGACGGTA chrI:2901088-2901168 5 1.42e-05 GTGT GCAAACAC GGCGACGCGA chrIII:8085491-8085571 42 1.42e-05 ACAATTGTGT GCAAACAC TATGAGGGAT chrIV:11480592-11480672 16 1.42e-05 AGGTTTGTGT GCAAACAC TGTGACGCGC chrI:10518058-10518138 48 1.42e-05 ATACAACACC GCAAACAC CGTCACGTCA chrIII:9406734-9406814 42 1.42e-05 TGATGTTTGT GCAAACAC TTCGTGTAGA chrV:1196129-1196209 52 1.42e-05 TGCAAAGTAC GCAAACAC ATTGCGGACT chrII:2479160-2479240 69 1.42e-05 TGTATTGTAC GCAAACAC CACA chrIII:1558584-1558664 58 1.42e-05 CAGGTGGTCC GCAAACAC CGTCACGTTA chrI:2629397-2629477 51 1.42e-05 CGCCTTTTGT GCAAACAC GTCTTCGAAA chrII:3523690-3523770 4 1.42e-05 tac gcaaacac cgcaacgaca chrI:10622894-10622974 14 1.42e-05 AGACAAGTAC GCAAACAC CAACAACAAT chrI:8692620-8692700 13 1.42e-05 GTAAAAGTCC GCAAACAC CGTGCCGCTC chrIV:240449-240529 55 1.42e-05 CGCACTCTCC GCAAACAC TCCGGCTCTC chrII:10824215-10824295 16 1.42e-05 ATTCCAGTCC GCAAACAC TCTCACGCCA chrIV:1009706-1009786 27 1.42e-05 ATTGGCGTAC GCAAACAC CCGACGCGAC chrV:730424-730504 54 3.21e-05 TTATAAATTC GAAAACAC AACAACTGTA chrIII:6968452-6968532 41 3.21e-05 TGTCGTAAAA GAAAACAC GCGGGAGACT chrI:7094984-7095064 13 3.21e-05 AGTTATGACG GAAAACAC GTCAAGTGTA chrV:177046-177126 40 4.34e-05 GAGCGCGCCA GCAAACCC GCATTGACGC chrIII:11063439-11063519 40 5.46e-05 gacggtgttt gcacaCAC TGGCGTCGCC chrII:10200910-10200990 46 6.85e-05 CCGTGGCCTA GGAAACAC AACAATGAAA chrIII:6278749-6278829 62 8.29e-05 AATTATATTT GCAAACTC CTCTTCGTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17151354-17151434 1.4e-05 21_[+3]_51 chrIV:13098853-13098933 1.4e-05 35_[+3]_37 chrI:2901088-2901168 1.4e-05 4_[+3]_68 chrIII:8085491-8085571 1.4e-05 41_[+3]_31 chrIV:11480592-11480672 1.4e-05 15_[+3]_57 chrI:10518058-10518138 1.4e-05 47_[+3]_25 chrIII:9406734-9406814 1.4e-05 41_[+3]_31 chrV:1196129-1196209 1.4e-05 51_[+3]_21 chrII:2479160-2479240 1.4e-05 68_[+3]_4 chrIII:1558584-1558664 1.4e-05 57_[+3]_15 chrI:2629397-2629477 1.4e-05 50_[+3]_22 chrII:3523690-3523770 1.4e-05 3_[+3]_69 chrI:10622894-10622974 1.4e-05 13_[+3]_59 chrI:8692620-8692700 1.4e-05 12_[+3]_60 chrIV:240449-240529 1.4e-05 54_[+3]_18 chrII:10824215-10824295 1.4e-05 15_[+3]_57 chrIV:1009706-1009786 1.4e-05 26_[+3]_46 chrV:730424-730504 3.2e-05 53_[+3]_19 chrIII:6968452-6968532 3.2e-05 40_[+3]_32 chrI:7094984-7095064 3.2e-05 12_[+3]_60 chrV:177046-177126 4.3e-05 39_[+3]_33 chrIII:11063439-11063519 5.5e-05 39_[+3]_33 chrII:10200910-10200990 6.9e-05 45_[+3]_27 chrIII:6278749-6278829 8.3e-05 61_[+3]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAAACAC width=8 seqs=24 chrX:17151354-17151434 ( 22) GCAAACAC 1 chrIV:13098853-13098933 ( 36) GCAAACAC 1 chrI:2901088-2901168 ( 5) GCAAACAC 1 chrIII:8085491-8085571 ( 42) GCAAACAC 1 chrIV:11480592-11480672 ( 16) GCAAACAC 1 chrI:10518058-10518138 ( 48) GCAAACAC 1 chrIII:9406734-9406814 ( 42) GCAAACAC 1 chrV:1196129-1196209 ( 52) GCAAACAC 1 chrII:2479160-2479240 ( 69) GCAAACAC 1 chrIII:1558584-1558664 ( 58) GCAAACAC 1 chrI:2629397-2629477 ( 51) GCAAACAC 1 chrII:3523690-3523770 ( 4) GCAAACAC 1 chrI:10622894-10622974 ( 14) GCAAACAC 1 chrI:8692620-8692700 ( 13) GCAAACAC 1 chrIV:240449-240529 ( 55) GCAAACAC 1 chrII:10824215-10824295 ( 16) GCAAACAC 1 chrIV:1009706-1009786 ( 27) GCAAACAC 1 chrV:730424-730504 ( 54) GAAAACAC 1 chrIII:6968452-6968532 ( 41) GAAAACAC 1 chrI:7094984-7095064 ( 13) GAAAACAC 1 chrV:177046-177126 ( 40) GCAAACCC 1 chrIII:11063439-11063519 ( 40) GCACACAC 1 chrII:10200910-10200990 ( 46) GGAAACAC 1 chrIII:6278749-6278829 ( 62) GCAAACTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.0167 E= 5.4e-013 -1123 -1123 221 -1123 -116 191 -238 -1123 184 -1123 -1123 -1123 178 -240 -1123 -1123 184 -1123 -1123 -1123 -1123 218 -1123 -1123 171 -240 -1123 -276 -1123 218 -1123 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 5.4e-013 0.000000 0.000000 1.000000 0.000000 0.125000 0.833333 0.041667 0.000000 1.000000 0.000000 0.000000 0.000000 0.958333 0.041667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.916667 0.041667 0.000000 0.041667 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAC MEME-3 regular expression -------------------------------------------------------------------------------- GCAAACAC -------------------------------------------------------------------------------- Time 17.37 secs. ******************************************************************************** ******************************************************************************** MOTIF CTAGGCCA MEME-4 width = 8 sites = 18 llr = 189 E-value = 2.9e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTAGGCCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::9::::a pos.-specific C 9:1::a9: probability G :::aa:1: matrix T 1a:::::: bits 2.2 *** 2.0 *** 1.8 * ***** 1.5 ** ***** Relative 1.3 ******** Entropy 1.1 ******** (15.1 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTAGGCCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGGCCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrIII:5722044-5722124 11 1.12e-05 GCGGAGGTTT CTAGGCCA CCGGCTGTGT chrV:18981149-18981229 39 1.12e-05 TCAGAGTTTC CTAGGCCA CCGCCGGTGT chrII:13117277-13117357 38 1.12e-05 CCCCGAAATG CTAGGCCA CGCGTCGCGT chrI:4247572-4247652 25 1.12e-05 TAGTTACTTC CTAGGCCA CGCGGCCGCG chrI:1034365-1034445 26 1.12e-05 GCGCGGGTTT CTAGGCCA CGGCCACCGA chrIII:8850788-8850868 68 1.12e-05 CGTGGAAATT CTAGGCCA CGGAT chrIII:12273755-12273835 51 1.12e-05 GTTGTGGTTT CTAGGCCA GGGGTTTTGT chrII:5511914-5511994 12 1.12e-05 GCCATACTTT CTAGGCCA CCATTTAAAT chrI:8511434-8511514 23 1.12e-05 ACGGAGAAAG CTAGGCCA TAAGTGGGAT chrV:10320338-10320418 10 1.12e-05 TTCCTAGAA CTAGGCCA CGGCCACGCG chrII:15089582-15089662 27 1.12e-05 CATTTGGTTC CTAGGCCA CGCGGCCGTG chrIII:9465600-9465680 61 1.12e-05 TCAGCATTTT CTAGGCCA TTTCGGAGAT chrI:5659120-5659200 53 1.12e-05 TTGTCGGTTC CTAGGCCA CCACCTCGTT chrII:6097614-6097694 60 2.01e-05 GAGGGCATTC CTCGGCCA TATTACGATA chrIII:12673527-12673607 54 2.01e-05 GAGACCCCGA CTCGGCCA GGCAAGtttt chrIV:3803399-3803479 58 3.44e-05 CCGGAGATTT TTAGGCCA CACGACCGTG chrV:15082467-15082547 56 3.44e-05 TGCGCAGAAG TTAGGCCA TTCGGCGTTA chrIII:4720961-4721041 57 4.54e-05 CATTGTGATG CTAGGCGA GAGAGTGTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGGCCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrIII:5722044-5722124 1.1e-05 10_[+4]_62 chrV:18981149-18981229 1.1e-05 38_[+4]_34 chrII:13117277-13117357 1.1e-05 37_[+4]_35 chrI:4247572-4247652 1.1e-05 24_[+4]_48 chrI:1034365-1034445 1.1e-05 25_[+4]_47 chrIII:8850788-8850868 1.1e-05 67_[+4]_5 chrIII:12273755-12273835 1.1e-05 50_[+4]_22 chrII:5511914-5511994 1.1e-05 11_[+4]_61 chrI:8511434-8511514 1.1e-05 22_[+4]_50 chrV:10320338-10320418 1.1e-05 9_[+4]_63 chrII:15089582-15089662 1.1e-05 26_[+4]_46 chrIII:9465600-9465680 1.1e-05 60_[+4]_12 chrI:5659120-5659200 1.1e-05 52_[+4]_20 chrII:6097614-6097694 2e-05 59_[+4]_13 chrIII:12673527-12673607 2e-05 53_[+4]_19 chrIV:3803399-3803479 3.4e-05 57_[+4]_15 chrV:15082467-15082547 3.4e-05 55_[+4]_17 chrIII:4720961-4721041 4.5e-05 56_[+4]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGGCCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTAGGCCA width=8 seqs=18 chrIII:5722044-5722124 ( 11) CTAGGCCA 1 chrV:18981149-18981229 ( 39) CTAGGCCA 1 chrII:13117277-13117357 ( 38) CTAGGCCA 1 chrI:4247572-4247652 ( 25) CTAGGCCA 1 chrI:1034365-1034445 ( 26) CTAGGCCA 1 chrIII:8850788-8850868 ( 68) CTAGGCCA 1 chrIII:12273755-12273835 ( 51) CTAGGCCA 1 chrII:5511914-5511994 ( 12) CTAGGCCA 1 chrI:8511434-8511514 ( 23) CTAGGCCA 1 chrV:10320338-10320418 ( 10) CTAGGCCA 1 chrII:15089582-15089662 ( 27) CTAGGCCA 1 chrIII:9465600-9465680 ( 61) CTAGGCCA 1 chrI:5659120-5659200 ( 53) CTAGGCCA 1 chrII:6097614-6097694 ( 60) CTCGGCCA 1 chrIII:12673527-12673607 ( 54) CTCGGCCA 1 chrIV:3803399-3803479 ( 58) TTAGGCCA 1 chrV:15082467-15082547 ( 56) TTAGGCCA 1 chrIII:4720961-4721041 ( 57) CTAGGCGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGGCCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 10.1187 E= 2.9e-008 -1081 201 -1081 -135 -1081 -1081 -1081 182 167 -99 -1081 -1081 -1081 -1081 221 -1081 -1081 -1081 221 -1081 -1081 218 -1081 -1081 -1081 210 -196 -1081 184 -1081 -1081 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGGCCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 2.9e-008 0.000000 0.888889 0.000000 0.111111 0.000000 0.000000 0.000000 1.000000 0.888889 0.111111 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.944444 0.055556 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGGCCA MEME-4 regular expression -------------------------------------------------------------------------------- CTAGGCCA -------------------------------------------------------------------------------- Time 20.79 secs. ******************************************************************************** ******************************************************************************** MOTIF TTGCGSAC MEME-5 width = 8 sites = 39 llr = 327 E-value = 8.5e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGCGSAC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::2:91 pos.-specific C 2::a:3:8 probability G ::a:8511 matrix T 8a:::2:1 bits 2.2 ** 2.0 ** 1.8 *** 1.5 **** * Relative 1.3 ***** * Entropy 1.1 ***** ** (12.1 bits) 0.9 ***** ** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTGCGGAC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCGSAC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:17151354-17151434 42 1.12e-05 TCACGGCATT TTGCGGAC TTCCCTTTGA chrV:126766-126846 30 1.12e-05 GTGACGGTGT TTGCGGAC AAACGCCTGC chrV:1196129-1196209 61 1.12e-05 CGCAAACACA TTGCGGAC TTTGTGCGGA chrIII:13307271-13307351 52 1.12e-05 TCACGCACAA TTGCGGAC CCAGTGAAAA chrII:13083911-13083991 53 1.12e-05 CTACGACACT TTGCGGAC ACACTAATTT chrII:3682936-3683016 39 1.12e-05 TGACGCCATG TTGCGGAC TTTCGGCGTC chrII:4322998-4323078 62 1.12e-05 CGCGCGGTGT TTGCGGAC ATTTGAATTT chrII:10798649-10798729 24 1.12e-05 CTACGCGCAA TTGCGGAC TTGAAAATGG chrII:3523690-3523770 24 1.12e-05 caacgacaca ttgcggac catttcgctg chrI:9611623-9611703 61 1.12e-05 CTACGCACAA TTGCGGAC TTTCCGGTAT chrI:9962061-9962141 68 4.58e-05 TGACGACAAC TTGCGTAC AGGCG chrIII:11526549-11526629 59 4.58e-05 TTCGCTGTAT TTGCGTAC TTTTTCTCCC chrV:729274-729354 41 4.58e-05 CTTAGTTTCT CTGCGGAC TCCTGACTTA chrII:2565050-2565130 69 4.58e-05 GTGACGGTGT TTGCGTAC TTTT chrIII:2151615-2151695 72 4.58e-05 GTGCGCGTGT CTGCGGAC C chrI:9150313-9150393 40 4.58e-05 GCGTACGTGA TTGCGTAC CGTACCCCAC chrI:8692620-8692700 33 4.58e-05 TGCCGCTCAA CTGCGGAC AGCCTCGCTG chrI:8696376-8696456 70 4.58e-05 CCACGCACAA TTGCGTAC TTC chrII:506194-506274 26 5.46e-05 GTCTCGTCGT CTGCGCAC TTATTTTCTC chrIV:240449-240529 42 5.46e-05 TCGTAATTTC CTGCGCAC TCTCCGCAAA chrI:9934492-9934572 27 6.90e-05 GTCACGGTGT TTGCAGAC TCTCAGTCTG chrIII:8889107-8889187 46 9.19e-05 GTAACGGTGT TTGCGGAT TTTTTGCGTG chrII:3482372-3482452 52 9.19e-05 GTGCGCTCTG TTGCGGAT TTTTATATTT chrIII:6116629-6116709 33 1.07e-04 GTGTTAGTGT TTGCACAC AAGACACCTA chrIII:9393494-9393574 34 1.07e-04 TCACGCGCAT TTGCACAC TCAGTGGAGT chrIII:4587283-4587363 73 1.07e-04 GTCACGGTGT TTGCACAC chrIII:2780962-2781042 34 1.07e-04 GTGGCGGTGT TTGCACAC TTTTGTCTAC chrI:10622894-10622974 33 1.07e-04 AACAACAATA TTGCACAC ATTACACAGA chrIII:5871909-5871989 60 1.41e-04 CAACACCTTT TTGCGCGC TAAATTTGAA chrIV:11480592-11480672 36 1.41e-04 TGACGCGCAA TTGCGGAG CGAATTTCAA chrII:7945295-7945375 64 1.41e-04 CAAAGTGTCT TTGCGCAT TTCTCGTGT chrI:10591702-10591782 50 1.41e-04 GAGCACTCAT TTGCGCGC GAAATTCAAA chrI:5281838-5281918 25 1.41e-04 CATCAGTTAT TTGCGCGC CAATTTTGAA chrI:7094984-7095064 50 1.41e-04 TAGTCGGTTC TTGCGCAT TGTCCGTTCA chrIII:6985282-6985362 52 1.41e-04 tgcggagaaa ttgcggag aaattgcgAA chrI:3438927-3439007 50 1.66e-04 TGCGGTGCAA CTGCGTAC AAAACACCAA chrIV:11571555-11571635 56 1.66e-04 AGAGGGGAAC TTGCGGAA TAATAGAAAT chrII:4999315-4999395 53 1.66e-04 GTGACGGTGT TTGCGGAA GAGAGAGGCA chrIV:11433905-11433985 39 2.87e-04 AATGGTTCGC TGGCGCAC TTCTCGATTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCGSAC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17151354-17151434 1.1e-05 41_[+5]_31 chrV:126766-126846 1.1e-05 29_[+5]_43 chrV:1196129-1196209 1.1e-05 60_[+5]_12 chrIII:13307271-13307351 1.1e-05 51_[+5]_21 chrII:13083911-13083991 1.1e-05 52_[+5]_20 chrII:3682936-3683016 1.1e-05 38_[+5]_34 chrII:4322998-4323078 1.1e-05 61_[+5]_11 chrII:10798649-10798729 1.1e-05 23_[+5]_49 chrII:3523690-3523770 1.1e-05 23_[+5]_49 chrI:9611623-9611703 1.1e-05 60_[+5]_12 chrI:9962061-9962141 4.6e-05 67_[+5]_5 chrIII:11526549-11526629 4.6e-05 58_[+5]_14 chrV:729274-729354 4.6e-05 40_[+5]_32 chrII:2565050-2565130 4.6e-05 68_[+5]_4 chrIII:2151615-2151695 4.6e-05 71_[+5]_1 chrI:9150313-9150393 4.6e-05 39_[+5]_33 chrI:8692620-8692700 4.6e-05 32_[+5]_40 chrI:8696376-8696456 4.6e-05 69_[+5]_3 chrII:506194-506274 5.5e-05 25_[+5]_47 chrIV:240449-240529 5.5e-05 41_[+5]_31 chrI:9934492-9934572 6.9e-05 26_[+5]_46 chrIII:8889107-8889187 9.2e-05 45_[+5]_27 chrII:3482372-3482452 9.2e-05 51_[+5]_21 chrIII:6116629-6116709 0.00011 32_[+5]_40 chrIII:9393494-9393574 0.00011 33_[+5]_39 chrIII:4587283-4587363 0.00011 72_[+5] chrIII:2780962-2781042 0.00011 33_[+5]_39 chrI:10622894-10622974 0.00011 32_[+5]_40 chrIII:5871909-5871989 0.00014 59_[+5]_13 chrIV:11480592-11480672 0.00014 35_[+5]_37 chrII:7945295-7945375 0.00014 63_[+5]_9 chrI:10591702-10591782 0.00014 49_[+5]_23 chrI:5281838-5281918 0.00014 24_[+5]_48 chrI:7094984-7095064 0.00014 49_[+5]_23 chrIII:6985282-6985362 0.00014 51_[+5]_21 chrI:3438927-3439007 0.00017 49_[+5]_23 chrIV:11571555-11571635 0.00017 55_[+5]_17 chrII:4999315-4999395 0.00017 52_[+5]_20 chrIV:11433905-11433985 0.00029 38_[+5]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCGSAC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGCGSAC width=8 seqs=39 chrX:17151354-17151434 ( 42) TTGCGGAC 1 chrV:126766-126846 ( 30) TTGCGGAC 1 chrV:1196129-1196209 ( 61) TTGCGGAC 1 chrIII:13307271-13307351 ( 52) TTGCGGAC 1 chrII:13083911-13083991 ( 53) TTGCGGAC 1 chrII:3682936-3683016 ( 39) TTGCGGAC 1 chrII:4322998-4323078 ( 62) TTGCGGAC 1 chrII:10798649-10798729 ( 24) TTGCGGAC 1 chrII:3523690-3523770 ( 24) TTGCGGAC 1 chrI:9611623-9611703 ( 61) TTGCGGAC 1 chrI:9962061-9962141 ( 68) TTGCGTAC 1 chrIII:11526549-11526629 ( 59) TTGCGTAC 1 chrV:729274-729354 ( 41) CTGCGGAC 1 chrII:2565050-2565130 ( 69) TTGCGTAC 1 chrIII:2151615-2151695 ( 72) CTGCGGAC 1 chrI:9150313-9150393 ( 40) TTGCGTAC 1 chrI:8692620-8692700 ( 33) CTGCGGAC 1 chrI:8696376-8696456 ( 70) TTGCGTAC 1 chrII:506194-506274 ( 26) CTGCGCAC 1 chrIV:240449-240529 ( 42) CTGCGCAC 1 chrI:9934492-9934572 ( 27) TTGCAGAC 1 chrIII:8889107-8889187 ( 46) TTGCGGAT 1 chrII:3482372-3482452 ( 52) TTGCGGAT 1 chrIII:6116629-6116709 ( 33) TTGCACAC 1 chrIII:9393494-9393574 ( 34) TTGCACAC 1 chrIII:4587283-4587363 ( 73) TTGCACAC 1 chrIII:2780962-2781042 ( 34) TTGCACAC 1 chrI:10622894-10622974 ( 33) TTGCACAC 1 chrIII:5871909-5871989 ( 60) TTGCGCGC 1 chrIV:11480592-11480672 ( 36) TTGCGGAG 1 chrII:7945295-7945375 ( 64) TTGCGCAT 1 chrI:10591702-10591782 ( 50) TTGCGCGC 1 chrI:5281838-5281918 ( 25) TTGCGCGC 1 chrI:7094984-7095064 ( 50) TTGCGCAT 1 chrIII:6985282-6985362 ( 52) TTGCGGAG 1 chrI:3438927-3439007 ( 50) CTGCGTAC 1 chrIV:11571555-11571635 ( 56) TTGCGGAA 1 chrII:4999315-4999395 ( 53) TTGCGGAA 1 chrIV:11433905-11433985 ( 39) TGGCGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCGSAC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 18250 bayes= 9.09119 E= 8.5e-007 -1193 -52 -1193 158 -1193 -1193 -308 178 -1193 -1193 221 -1193 -1193 218 -1193 -1193 -86 -1193 197 -1193 -1193 59 124 -88 172 -1193 -149 -1193 -244 185 -208 -146 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCGSAC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 8.5e-007 0.000000 0.153846 0.000000 0.846154 0.000000 0.000000 0.025641 0.974359 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.153846 0.000000 0.846154 0.000000 0.000000 0.333333 0.512821 0.153846 0.923077 0.000000 0.076923 0.000000 0.051282 0.794872 0.051282 0.102564 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGCGSAC MEME-5 regular expression -------------------------------------------------------------------------------- TTGCG[GC]AC -------------------------------------------------------------------------------- Time 24.13 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrI:7099719-7099799 2.05e-02 15_[+2(7.41e-05)]_57 chrI:7098250-7098330 3.93e-01 80 chrIII:6982107-6982187 4.96e-02 80 chrIII:11940168-11940248 1.56e-01 31_[+2(7.41e-05)]_41 chrIII:6982315-6982395 9.72e-01 80 chrI:9853426-9853506 1.30e-01 80 chrIII:11939397-11939477 1.70e-01 80 chrI:5982940-5983020 1.34e-01 12_[+2(3.29e-05)]_60 chrIII:4752731-4752811 1.48e-01 80 chrII:10867373-10867453 9.75e-01 80 chrIV:8236324-8236404 5.86e-01 80 chrIII:6985282-6985362 9.58e-02 80 chrIII:8899894-8899974 4.40e-01 80 chrI:9611623-9611703 8.60e-03 60_[+5(1.12e-05)]_12 chrIII:6988216-6988296 2.10e-01 80 chrI:9616381-9616461 5.97e-03 27_[+1(3.06e-05)]_45 chrIV:1009706-1009786 1.07e-03 26_[+3(1.42e-05)]_46 chrI:7069281-7069361 7.44e-01 80 chrII:6928548-6928628 7.38e-01 80 chrIV:1056623-1056703 5.94e-01 80 chrI:7090370-7090450 9.48e-01 80 chrII:8158136-8158216 1.03e-01 80 chrII:10824215-10824295 1.78e-04 15_[+3(1.42e-05)]_57 chrI:8696376-8696456 3.26e-03 69_[+5(4.58e-05)]_3 chrIII:8901261-8901341 8.04e-02 80 chrIV:2349084-2349164 1.18e-02 10_[+1(1.96e-05)]_62 chrII:6974148-6974228 3.67e-01 80 chrIII:6979036-6979116 3.58e-01 80 chrIII:10357958-10358038 1.67e-01 80 chrIV:240449-240529 6.68e-04 41_[+5(5.46e-05)]_5_[+3(1.42e-05)]_\ 18 chrIII:10064294-10064374 2.62e-03 22_[+2(9.81e-05)]_1_[+2(2.75e-05)]_\ 41 chrIV:1054877-1054957 3.41e-02 80 chrIII:7858640-7858720 9.61e-01 80 chrI:8692620-8692700 4.34e-04 12_[+3(1.42e-05)]_12_[+5(4.58e-05)]_\ 40 chrIII:4720961-4721041 1.81e-02 56_[+4(4.54e-05)]_16 chrI:10400733-10400813 5.20e-01 80 chrIII:13187900-13187980 2.09e-01 80 chrI:11611411-11611491 9.71e-02 80 chrIV:11315023-11315103 1.77e-02 63_[+2(1.21e-05)]_9 chrI:15023116-15023196 5.09e-03 80 chrI:8675492-8675572 7.66e-01 80 chrIV:519581-519661 1.74e-02 80 chrI:7094984-7095064 9.84e-04 12_[+3(3.21e-05)]_60 chrV:11889753-11889833 7.74e-01 80 chrI:5659120-5659200 2.52e-02 52_[+4(1.12e-05)]_20 chrIII:12673527-12673607 1.44e-03 38_[+2(9.81e-05)]_7_[+4(2.01e-05)]_\ 19 chrII:3553580-3553660 9.12e-01 80 chrIII:6968452-6968532 1.70e-02 40_[+3(3.21e-05)]_32 chrIV:874781-874861 2.88e-01 25_[+3(9.71e-05)]_47 chrIV:1177911-1177991 9.61e-01 80 chrIII:8905277-8905357 6.16e-01 80 chrI:9150313-9150393 1.89e-02 39_[+5(4.58e-05)]_33 chrIII:3857214-3857294 1.85e-01 80 chrI:5281838-5281918 1.18e-04 2_[+4(2.01e-05)]_70 chrI:323663-323743 2.18e-01 80 chrIII:6995995-6996075 1.04e-01 80 chrIII:9465600-9465680 4.14e-04 60_[+4(1.12e-05)]_12 chrII:8143470-8143550 3.46e-01 80 chrIV:11592949-11593029 1.60e-02 54_[+2(6.20e-05)]_18 chrII:9177231-9177311 1.66e-01 80 chrII:15089582-15089662 8.65e-05 26_[+4(1.12e-05)]_2_[+2(1.21e-05)]_\ 36 chrI:10622894-10622974 1.18e-03 13_[+3(1.42e-05)]_59 chrI:10406201-10406281 9.57e-01 80 chrI:10161983-10162063 3.54e-03 16_[+2(2.75e-05)]_3_[+1(7.56e-05)]_\ 45 chrII:5544273-5544353 6.55e-01 80 chrIII:2805227-2805307 1.22e-01 80 chrX:2688687-2688767 4.11e-01 80 chrIII:7940982-7941062 2.72e-02 54_[+1(5.82e-05)]_3_[+1(5.82e-05)]_\ 7 chrIII:4343274-4343354 3.54e-02 80 chrV:725553-725633 3.65e-01 80 chrII:3523690-3523770 5.70e-05 3_[+3(1.42e-05)]_12_[+5(1.12e-05)]_\ 49 chrII:10798649-10798729 8.55e-03 23_[+5(1.12e-05)]_49 chrV:10320338-10320418 5.58e-04 9_[+4(1.12e-05)]_[+2(5.33e-05)]_6_\ [+4(2.01e-05)]_41 chrX:7953005-7953085 5.03e-01 80 chrI:3147824-3147904 1.14e-01 80 chrI:11416727-11416807 2.37e-01 80 chrIV:16415738-16415818 8.06e-04 44_[+2(4.65e-05)]_28 chrI:9581612-9581692 3.23e-01 80 chrIII:2151615-2151695 1.49e-03 71_[+5(4.58e-05)]_1 chrII:10538116-10538196 1.14e-02 34_[+2(1.21e-05)]_38 chrI:8511434-8511514 1.63e-02 22_[+4(1.12e-05)]_50 chrII:4322998-4323078 1.61e-03 47_[+2(7.41e-05)]_6_[+5(1.12e-05)]_\ 11 chrII:5511914-5511994 6.73e-02 11_[+4(1.12e-05)]_61 chrII:10395520-10395600 2.24e-03 49_[+2(1.21e-05)]_23 chrIV:1108190-1108270 4.51e-01 80 chrV:177046-177126 1.35e-03 29_[+1(5.82e-05)]_2_[+3(4.34e-05)]_\ 33 chrIII:11942843-11942923 9.60e-01 80 chrIII:8332032-8332112 9.99e-01 80 chrI:10598569-10598649 3.70e-01 80 chrI:2629397-2629477 1.01e-02 50_[+3(1.42e-05)]_22 chrIII:4905490-4905570 4.82e-04 2_[+4(2.01e-05)]_70 chrII:2565050-2565130 2.74e-02 68_[+5(4.58e-05)]_4 chrII:3682936-3683016 2.74e-04 38_[+5(1.12e-05)]_34 chrI:6760291-6760371 1.40e-01 27_[+2(9.81e-05)]_45 chrII:8216556-8216636 1.65e-01 80 chrIV:7816584-7816664 1.93e-02 80 chrIII:11112879-11112959 8.80e-03 80 chrIII:4912479-4912559 7.61e-03 49_[+2(1.21e-05)]_23 chrIII:2780962-2781042 1.24e-01 80 chrIII:1558584-1558664 3.77e-02 57_[+3(1.42e-05)]_15 chrX:2234033-2234113 1.91e-01 80 chrII:98061-98141 7.00e-03 12_[+1(3.06e-05)]_60 chrI:1340089-1340169 1.57e-01 80 chrV:2127172-2127252 1.68e-02 59_[+2(1.21e-05)]_13 chrIII:12273755-12273835 6.05e-03 50_[+4(1.12e-05)]_22 chrI:7283808-7283888 2.70e-01 80 chrI:10192894-10192974 7.31e-03 39_[+2(1.21e-05)]_33 chrII:13369387-13369467 6.79e-02 80 chrX:6743059-6743139 9.56e-01 80 chrV:729274-729354 7.05e-02 40_[+5(4.58e-05)]_32 chrIII:12152331-12152411 7.57e-01 80 chrII:506194-506274 9.10e-02 25_[+5(5.46e-05)]_47 chrIII:8144716-8144796 3.95e-02 80 chrII:7836754-7836834 8.21e-01 80 chrII:4999315-4999395 4.02e-01 80 chrIII:1037327-1037407 1.67e-03 30_[+1(7.56e-05)]_42 chrII:10862954-10863034 8.47e-01 80 chrIV:261731-261811 8.26e-03 56_[+1(1.96e-05)]_16 chrI:8970172-8970252 1.69e-03 6_[+2(5.33e-05)]_66 chrI:10591702-10591782 6.53e-03 21_[+1(7.56e-05)]_51 chrIV:658134-658214 3.52e-01 80 chrV:15082467-15082547 3.82e-03 55_[+4(3.44e-05)]_17 chrII:8745713-8745793 9.92e-01 80 chrI:10435805-10435885 4.55e-02 80 chrI:11893900-11893980 6.60e-01 80 chrIII:12218791-12218871 7.65e-01 80 chrIV:1953372-1953452 6.08e-02 54_[+1(7.56e-05)]_18 chrIV:12209114-12209194 3.80e-01 80 chrIII:10507017-10507097 4.67e-03 20_[+1(4.48e-05)]_52 chrIII:8850788-8850868 3.45e-04 67_[+4(1.12e-05)]_5 chrIV:6631979-6632059 4.85e-05 7_[+1(5.82e-05)]_12_[+2(1.21e-05)]_\ 45 chrIII:4587283-4587363 3.84e-02 80 chrII:2995123-2995203 4.30e-01 80 chrII:4048011-4048091 6.96e-01 80 chrV:727964-728044 2.66e-01 80 chrII:3482372-3482452 1.86e-06 1_[+2(1.88e-05)]_16_[+2(6.20e-05)]_\ 6_[+1(3.06e-05)]_4_[+5(9.19e-05)]_21 chrI:10330558-10330638 7.67e-02 80 chrII:6097614-6097694 3.34e-04 27_[+2(4.65e-05)]_24_[+4(2.01e-05)]_\ 13 chrII:13083911-13083991 1.23e-04 52_[+5(1.12e-05)]_20 chrIII:9393494-9393574 6.02e-03 80 chrII:2479160-2479240 4.03e-02 68_[+3(1.42e-05)]_4 chrIII:6116629-6116709 8.90e-03 80 chrII:7022733-7022813 4.47e-03 11_[+1(3.06e-05)]_61 chrII:5819826-5819906 5.40e-02 80 chrII:6967731-6967811 9.04e-02 43_[+1(7.56e-05)]_29 chrIII:6897752-6897832 2.66e-01 80 chrIII:7234299-7234379 1.25e-03 48_[+1(1.96e-05)]_24 chrIII:13307271-13307351 2.93e-03 51_[+5(1.12e-05)]_21 chrI:9609680-9609760 1.54e-01 80 chrV:5844566-5844646 3.10e-01 80 chrI:1034365-1034445 2.35e-03 25_[+4(1.12e-05)]_47 chrII:2504572-2504652 2.85e-02 57_[+1(5.82e-05)]_15 chrIII:11290670-11290750 6.45e-02 64_[+2(9.81e-05)]_8 chrIII:8847860-8847940 4.77e-02 80 chrII:7301838-7301918 2.62e-02 80 chrII:10200910-10200990 2.51e-03 32_[+2(2.75e-05)]_5_[+3(6.85e-05)]_\ 27 chrV:1196129-1196209 1.60e-04 51_[+3(1.42e-05)]_1_[+5(1.12e-05)]_\ 12 chrIII:8889107-8889187 3.15e-03 45_[+5(9.19e-05)]_27 chrIII:9406734-9406814 3.55e-02 41_[+3(1.42e-05)]_31 chrI:6011895-6011975 3.77e-01 80 chrIV:1239885-1239965 6.18e-01 80 chrIV:11068396-11068476 9.04e-01 80 chrI:7082153-7082233 7.38e-01 80 chrI:13421198-13421278 5.97e-01 80 chrII:12459616-12459696 6.59e-02 48_[+1(5.82e-05)]_24 chrV:730424-730504 1.03e-01 53_[+3(3.21e-05)]_19 chrI:10518058-10518138 1.72e-02 47_[+3(1.42e-05)]_25 chrIII:7021411-7021491 1.46e-02 61_[+1(1.96e-05)]_11 chrX:13969281-13969361 7.11e-01 80 chrIII:10505355-10505435 9.89e-02 80 chrIII:11063439-11063519 2.84e-04 39_[+3(5.46e-05)]_5_[+2(7.41e-05)]_\ 20 chrI:9934492-9934572 3.82e-03 26_[+5(6.90e-05)]_46 chrII:9262291-9262371 9.56e-01 80 chrIII:12685947-12686027 6.42e-01 80 chrIV:3313519-3313599 8.68e-02 47_[+2(8.96e-05)]_25 chrI:4247572-4247652 9.33e-05 24_[+4(1.12e-05)]_2_[+2(5.29e-06)]_\ 38 chrII:8086958-8087038 1.48e-02 47_[+1(9.28e-05)]_25 chrIV:12078988-12079068 9.99e-01 80 chrX:2687295-2687375 8.46e-03 23_[+1(1.96e-05)]_49 chrII:3054762-3054842 1.22e-04 46_[+2(1.21e-05)]_8_[+1(5.82e-05)]_\ 10 chrIII:8529056-8529136 5.51e-04 55_[+4(2.01e-05)]_17 chrIII:8956407-8956487 1.51e-03 8_[+1(8.59e-06)]_64 chrIII:7277426-7277506 2.31e-01 80 chrIV:11571555-11571635 2.09e-01 80 chrII:8162401-8162481 1.67e-01 80 chrI:6314869-6314949 9.58e-02 80 chrIII:4269694-4269774 2.03e-02 80 chrII:7945295-7945375 9.07e-02 80 chrIV:3803399-3803479 2.65e-02 57_[+4(3.44e-05)]_15 chrII:1402327-1402407 3.33e-03 29_[+1(1.96e-05)]_43 chrIV:9670113-9670193 9.00e-01 80 chrV:12041274-12041354 1.06e-02 39_[+1(4.48e-05)]_33 chrV:2008497-2008577 8.81e-02 40_[+1(4.48e-05)]_32 chrIV:11480592-11480672 2.18e-03 15_[+3(1.42e-05)]_57 chrIV:11433905-11433985 3.37e-03 19_[+1(1.96e-05)]_53 chrI:14756500-14756580 4.69e-01 80 chrII:4603196-4603276 5.32e-03 43_[+3(9.71e-05)]_29 chrIV:5160354-5160434 1.11e-01 30_[+1(5.82e-05)]_42 chrI:12532226-12532306 2.97e-01 80 chrI:6407330-6407410 5.54e-03 71_[+1(1.96e-05)]_1 chrII:13117277-13117357 3.24e-03 37_[+4(1.12e-05)]_35 chrI:14788005-14788085 9.49e-01 80 chrIII:9808324-9808404 9.69e-01 80 chrI:6215536-6215616 4.09e-01 80 chrI:5261749-5261829 1.06e-01 80 chrIII:8085491-8085571 2.00e-02 41_[+3(1.42e-05)]_31 chrIII:11526549-11526629 8.39e-02 58_[+5(4.58e-05)]_14 chrI:3037921-3038001 8.99e-01 80 chrIII:7088112-7088192 2.30e-01 80 chrIII:9868261-9868341 1.90e-01 80 chrX:3379191-3379271 3.80e-01 80 chrIV:3694807-3694887 4.32e-04 25_[+1(8.59e-06)]_8_[+1(7.56e-05)]_\ 31 chrIII:5871909-5871989 7.94e-04 34_[+2(4.65e-05)]_38 chrII:12778528-12778608 3.07e-02 80 chrII:6601169-6601249 4.36e-02 80 chrII:347841-347921 2.06e-02 80 chrX:3839423-3839503 7.68e-02 80 chrI:10437962-10438042 6.88e-02 80 chrII:9975089-9975169 3.54e-01 80 chrII:3808277-3808357 1.04e-01 39_[+1(9.28e-05)]_33 chrI:3032880-3032960 1.09e-02 80 chrII:13908695-13908775 7.70e-02 80 chrI:4769652-4769732 3.39e-03 47_[+2(8.96e-05)]_25 chrIII:11110893-11110973 4.57e-04 41_[+1(4.48e-05)]_31 chrIV:2220272-2220352 7.63e-01 80 chrIV:8973705-8973785 1.18e-02 36_[+2(1.21e-05)]_36 chrX:7569879-7569959 1.04e-01 80 chrI:7961895-7961975 5.13e-01 80 chrI:10178384-10178464 6.58e-01 80 chrV:6226098-6226178 5.93e-01 80 chrIV:4171930-4172010 4.21e-04 35_[+1(8.59e-06)]_37 chrI:3438927-3439007 2.77e-03 80 chrIII:6278749-6278829 1.63e-01 61_[+3(8.29e-05)]_11 chrIII:4878516-4878596 8.97e-01 80 chrV:18981149-18981229 6.58e-03 38_[+4(1.12e-05)]_34 chrIV:6415396-6415476 1.00e+00 80 chrIII:2331315-2331395 3.96e-01 80 chrV:10736901-10736981 2.86e-01 80 chrI:2901088-2901168 2.52e-03 4_[+3(1.42e-05)]_68 chrIII:3510252-3510332 1.00e-01 80 chrIV:16995561-16995641 9.67e-03 52_[+2(5.33e-05)]_20 chrIV:4720717-4720797 4.39e-02 80 chrI:9962061-9962141 8.56e-03 67_[+5(4.58e-05)]_5 chrIV:14612481-14612561 9.99e-01 80 chrIV:13098853-13098933 2.04e-03 35_[+3(1.42e-05)]_37 chrI:5106196-5106276 1.42e-02 13_[+2(1.21e-05)]_59 chrIII:8971770-8971850 2.47e-02 32_[+1(4.48e-05)]_10_[+1(1.96e-05)]_\ 22 chrV:126766-126846 2.69e-03 29_[+5(1.12e-05)]_43 chrIII:5722044-5722124 2.99e-03 10_[+4(1.12e-05)]_62 chrX:17151354-17151434 8.25e-05 21_[+3(1.42e-05)]_12_[+5(1.12e-05)]_\ 31 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n12.farnam.hpc.yale.internal ********************************************************************************