# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_ztf-7/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/ztf-7.fasta
#   positives: 250 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/ztf-7.fasta (Sat Feb 12 16:15:53 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c27n03.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:20:56 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.316 C 0.183 G 0.176 T 0.324


MOTIF AKATGATG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AKATGATG   CATCATMT         22          0   1.5e-007   4.0e-004
#         ATATGATG   CATCATAT         12          0   2.1e-004   5.8e-001
#         AGATGATG   CATCATCT         10          0   8.9e-004   2.4e+000

letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 4.0e-004
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.454545 0.545455
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF TGATGCAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGATGCAA   TTGCATCA          7          0   7.5e-003   2.0e+001
#         TGATGCAA   TTGCATCA          7          0   7.5e-003   2.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 2.0e+001
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CATATGAC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CATATGAC   GTCATATG          4          0   6.2e-002   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.6e+002
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CATTTTTC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CATTTTTC   GAAAAATG          4          0   6.2e-002   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.6e+002
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF TAATATGA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TAATATGA   TCATATTA          4          0   6.2e-002   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.6e+002
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.74 seconds