# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_ztf-3/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/ztf-3.fasta
#   positives: 250 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/ztf-3.fasta (Sat Feb 12 16:15:53 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:20:51 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.260 C 0.227 G 0.226 T 0.288


MOTIF AAAAAATG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAAATG   CATTTTTT          3          0   1.2e-001   3.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.5e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAAATAAT DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATAAT   ATTATTTT          3          0   1.2e-001   3.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.5e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AGAAAAAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGAAAAAA   TTTTTTCT          3          0   1.2e-001   3.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.4e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATTTGTCG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTTGTCG   CGACAAAT          3          0   1.2e-001   3.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.4e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ATTTTATA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTTTATA   TATAAAAT          3          0   1.2e-001   3.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.4e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.71 seconds