# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_zip-8/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/zip-8.fasta
#   positives: 250 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/zip-8.fasta (Sat Feb 12 16:15:53 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:20:11 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.304 C 0.198 G 0.185 T 0.314


MOTIF TGACGTMA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGACGTMA   TKACGTCA         35          0   8.1e-012   1.8e-008
#         TGACGTCA   TGACGTCA         28          0   1.7e-009   3.8e-006
#         TGACGTAA   TTACGTCA          7          0   7.5e-003   1.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 1.8e-008
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.200000 0.800000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAATACAT DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATACAT   ATGTATTT         16          0   1.2e-005   2.6e-002
#         AAATACAT   ATGTATTT         16          0   1.2e-005   2.6e-002

letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 2.6e-002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF RTTGCGCA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    RTTGCGCA   TGCGCAAY         15          0   2.5e-005   5.2e-002
#         ATTGCGCA   TGCGCAAT         13          0   1.0e-004   2.2e-001
#         GTTGCGCA   TGCGCAAC          8          0   3.7e-003   7.8e+000

letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 5.2e-002
0.733333 0.000000 0.266667 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACTTGAAT DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTTGAAT   ATTCAAGT          9          0   1.8e-003   3.7e+000
#         ACTTGAAT   ATTCAAGT          9          0   1.8e-003   3.7e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 3.7e+000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF ATGACGCA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGACGCA   TGCGTCAT          7          0   7.5e-003   1.5e+001
#         ATGACGCA   TGCGTCAT          7          0   7.5e-003   1.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.5e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.68 seconds