# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_zip-5/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/zip-5.fasta
#   positives: 250 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/zip-5.fasta (Sat Feb 12 16:15:53 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c27n11.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:21:04 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.280 C 0.227 G 0.226 T 0.267


MOTIF CGTGGCCK DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGTGGCCK   MGGCCACG         14          0   5.1e-005   1.3e-001
#         CGTGGCCG   CGGCCACG          7          0   7.5e-003   2.0e+001
#         CGTGGCCT   AGGCCACG          7          0   7.5e-003   2.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.3e-001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.500000 0.500000


MOTIF CTAGGCCA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTAGGCCA   TGGCCTAG         11          1   2.9e-003   7.4e+000
#         CTAGGCCA   TGGCCTAG         11          1   2.9e-003   7.4e+000

letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 7.4e+000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAAGGGG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAGGGG   CCCCTTTT          7          0   7.5e-003   1.9e+001
#         AAAAGGGG   CCCCTTTT          7          0   7.5e-003   1.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.9e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CACGGCCG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACGGCCG   CGGCCGTG          6          0   1.5e-002   3.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.8e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CGCAGATC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGCAGATC   GATCTGCG          5          0   3.1e-002   7.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.5e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.81 seconds