# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_xnd-1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/xnd-1.fasta
#   positives: 250 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/xnd-1.fasta (Sat Feb 12 16:15:52 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c27n08.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:20:58 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.294 C 0.205 G 0.200 T 0.302


MOTIF CGCCTTTA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGCCTTTA   TAAAGGCG         14          0   5.1e-005   1.3e-001
#         CGCCTTTA   TAAAGGCG         14          0   5.1e-005   1.3e-001

letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.3e-001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GTAGATCA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTAGATCA   TGATCTAC          9          0   1.8e-003   4.7e+000
#         GTAGATCA   TGATCTAC          9          0   1.8e-003   4.7e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 4.7e+000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CGAGACCC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGAGACCC   GGGTCTCG          6          0   1.5e-002   3.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.8e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAATGCGG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATGCGG   CCGCATTT          5          0   3.1e-002   7.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.7e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CTACCGTA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTACCGTA   TACGGTAG          5          0   3.1e-002   7.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.6e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.75 seconds