# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/worm/inference_raw/DREME/RankLinear4.0_10_unc-30/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/worm/fasta/RankLinear4.0_10/unc-30.fasta
#   positives: 62 from ../result/final_prediction/worm/fasta/RankLinear4.0_10/unc-30.fasta (Sat Feb 12 16:15:52 EST 2022)
#   negatives: 62 from shuffled positives
#        host: c27n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 16:21:01 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.279 C 0.197 G 0.248 T 0.276


MOTIF AAAAATTC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAATTC   GAATTTTT          2          0   2.5e-001   1.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.9e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAAGAAG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAGAAG   CTTCTTTT          2          0   2.5e-001   1.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.9e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAAAGTAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAGTAA   TTACTTTT          2          0   2.5e-001   1.8e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.8e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAACGCGC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAACGCGC   GCGCGTTT          2          0   2.5e-001   1.8e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.8e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAGTACGC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGTACGC   GCGTACTT          2          0   2.5e-001   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.7e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.23 seconds